Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold1684
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 14501
ACGTcount: A:0.28, C:0.20, G:0.20, T:0.31
Found at i:52 original size:32 final size:31
Alignment explanation
Indices: 1--1202 Score: 407
Period size: 32 Copynumber: 37.9 Consensus size: 31
* *
1 CAACTCGTGTAGAC-TTTGAAAAGGTTACCAC
1 CAACT-GTGTAGGCTTTTGAAAAGGTTGCCAC
*
32 CAACATGTGTAGGCTTTTGAAACGGTTGCCAC
1 CAAC-TGTGTAGGCTTTTGAAAAGGTTGCCAC
* *
64 CAAATCAAGTG-A-GC-TTTGAAAAGGTTACCAC
1 C-AA-C-TGTGTAGGCTTTTGAAAAGGTTGCCAC
* *
95 CAATTCGTGTGGGCTTTTGAAAAGGTTGCCAC
1 CAACT-GTGTAGGCTTTTGAAAAGGTTGCCAC
* * * * *
127 AAATTCCTGTAGGCTATTGAAAAGGTTGCCAA
1 CAACT-GTGTAGGCTTTTGAAAAGGTTGCCAC
* * * *
159 TAACTCGTTTGGGC-TTTGAAAAGGTTGCGAC
1 CAACT-GTGTAGGCTTTTGAAAAGGTTGCCAC
* *
190 CAACT-CGTATGGACTTTTGCAAAGGTTGCCAC
1 CAACTGTGTA-GG-CTTTTGAAAAGGTTGCCAC
* * *
222 CAACTCATGTGGGATTTTGAAAAGGTTGCCAC
1 CAACT-GTGTAGGCTTTTGAAAAGGTTGCCAC
* * *
254 CAACTAGTGTGGGCTTCTGAAAAGGTTGCCAA
1 CAACT-GTGTAGGCTTTTGAAAAGGTTGCCAC
* *
286 CAACTTGTGTTGAC-TTT-ACAAAGGTTGCCAC
1 CAAC-TGTGTAGGCTTTTGA-AAAGGTTGCCAC
* * * * * * *
317 TAATTTGTGTGGGATTTTAAAAAGGCTACCAC
1 CAA-CTGTGTAGGCTTTTGAAAAGGTTGCCAC
* * * * *
349 CAACTCGTGTGGGATTTTGAAAAAGTTGCTAA
1 CAACT-GTGTAGGCTTTTGAAAAGGTTGCCAC
* *
381 CAACATGTGT-GGAC-TTTGAAAATGTTGTCAC
1 CAAC-TGTGTAGG-CTTTTGAAAAGGTTGCCAC
* * * * *
412 CTACTCGTGTGGGATTTTGAAATGTTTGCCAC
1 CAACT-GTGTAGGCTTTTGAAAAGGTTGCCAC
* * * *
444 CAAC-GCATTTGGGATTTTGAAAAGGTTGCTAC
1 CAACTG--TGTAGGCTTTTGAAAAGGTTGCCAC
* * * *
476 CAACTCATGTAGGCTTTTGAAAACGTTACCAA
1 CAACT-GTGTAGGCTTTTGAAAAGGTTGCCAC
**
508 CAACTTGTGT-GGAC-TTTGAAAAGGTTGTTAC
1 CAAC-TGTGTAGG-CTTTTGAAAAGGTTGCCAC
* * * **
539 CAACTCTGCAGG-TTTTGAAAAAGTTGCTGC
1 CAACTGTGTAGGCTTTTGAAAAGGTTGCCAC
* * * *
569 CAACT-CGTATGCGATTTTGAAAAGGTTTCCAT
1 CAACTGTGTA-G-GCTTTTGAAAAGGTTGCCAC
** *
601 CAACTCGTGTTTGCTTTTAAAAAGGTTGCCAC
1 CAACT-GTGTAGGCTTTTGAAAAGGTTGCCAC
* * * **
633 CAACTTGTGTTGAC-TTTGAAAAAGTTATCAC
1 CAAC-TGTGTAGGCTTTTGAAAAGGTTGCCAC
* * *
664 CAATTCGTGTGGGCTTTTGAAAAGGTTGCGAC
1 CAACT-GTGTAGGCTTTTGAAAAGGTTGCCAC
* * *
696 CAACTCTCATAGACTTTTGAAAAGGTTGCCAC
1 CAACTGT-GTAGGCTTTTGAAAAGGTTGCCAC
* ** * **
728 CAACTCATGCGGGCTTTTAAAAAGGTTATCAC
1 CAACT-GTGTAGGCTTTTGAAAAGGTTGCCAC
* * *
760 CAACTCGTGTGGACTTTTTGGCTTTTAAAAATGTTGCAAC
1 CAACT-GTGT--A------GGCTTTTGAAAAGGTTGCCAC
* *
800 CAACTCATGT-GGAC--TTGAAAAGGTTGCCAT
1 CAACT-GTGTAGG-CTTTTGAAAAGGTTGCCAC
* * * * *
830 CAACTTATGTGGGCTTTAGAAAAGGCTGCCAT
1 CAAC-TGTGTAGGCTTTTGAAAAGGTTGCCAC
* * * *
862 CAACTTATGTCGGGTTTTGAAAATGTTGCCAC
1 CAAC-TGTGTAGGCTTTTGAAAAGGTTGCCAC
* * *
894 CAACTCATGT-GGAC-TTTGATTATGG-TGCCAC
1 CAACT-GTGTAGG-CTTTTGA-AAAGGTTGCCAC
* * * * *
925 CAACTTTTATAGAC-TTTGAAAAGATTCCCAC
1 CAAC-TGTGTAGGCTTTTGAAAAGGTTGCCAC
** * * * * *
956 CAACTCACGTGGGCTTCTAAAAATGTTG---G
1 CAACT-GTGTAGGCTTTTGAAAAGGTTGCCAC
* ** * *
985 CAACTCGTGT-GGACTTTGGCTACGG-TGCTAC
1 CAACT-GTGTAGG-CTTTTGAAAAGGTTGCCAC
* * *
1016 AAACTCGTGT-GAAC-TTTGAAAAGGTTGTCAC
1 CAACT-GTGTAG-GCTTTTGAAAAGGTTGCCAC
* * * *
1047 AAACTCATGTAGGCTTTTAAAAAGGTTGCTAC
1 CAACT-GTGTAGGCTTTTGAAAAGGTTGCCAC
* ** * * *
1079 AAACACATGT-GGATTTTTGAAATGGTTACCAC
1 CAAC-TGTGTAGG-CTTTTGAAAAGGTTGCCAC
* * *
1111 CAACTCGTGTGGGCTTTTAAAAAGGTTGCTAC
1 CAACT-GTGTAGGCTTTTGAAAAGGTTGCCAC
**
1143 CAACTCGTGTTA-TATTTTGAAAAGGTTGCCAC
1 CAACT-GTG-TAGGCTTTTGAAAAGGTTGCCAC
*
1175 CAACTCGTGTAGGATTTTGAAAAGGTTG
1 CAACT-GTGTAGGCTTTTGAAAAGGTTG
1203 TTGTAGACAC
Statistics
Matches: 876, Mismatches: 218, Indels: 153
0.70 0.17 0.12
Matches are distributed among these distances:
28 4 0.00
29 19 0.02
30 61 0.07
31 208 0.24
32 535 0.61
33 14 0.02
34 9 0.01
40 26 0.03
ACGTcount: A:0.28, C:0.19, G:0.22, T:0.31
Consensus pattern (31 bp):
CAACTGTGTAGGCTTTTGAAAAGGTTGCCAC
Found at i:113 original size:63 final size:63
Alignment explanation
Indices: 14--754 Score: 321
Period size: 63 Copynumber: 11.7 Consensus size: 63
4 CTCGTGTAGA
* *
14 CTTTGAAAAGGTTACCACCAACAT-GTGTAGGCTTTTGAAACGGTTGCCACCAAATCAAGTGAG
1 CTTTGAAAAGGTTACCACCAAC-TCGTGTGGGCTTTTGAAAAGGTTGCCACCAAATCAAGTGAG
* **
77 CTTTGAAAAGGTTACCACCAATTCGTGTGGGCTTTTGAAAAGGTTGCCA-CAAATTCCTGT-AGG
1 CTTTGAAAAGGTTACCACCAACTCGTGTGGGCTTTTGAAAAGGTTGCCACCAAA-TCAAGTGA-G
* ** * * * *
140 CTATTGAAAAGGTTGCCAATAACTCGTTTGGGC-TTTGAAAAGGTTGCGACCAACTCGTA-TG-G
1 CT-TTGAAAAGGTTACCACCAACTCGTGTGGGCTTTTGAAAAGGTTGCCACCAAATC-AAGTGAG
* * * * * * *
202 ACTTTTGCAAAGGTTGCCACCAACTCATGTGGGATTTTGAAAAGGTTGCCACCAACT-AGTGTGG
1 -C-TTTGAAAAGGTTACCACCAACTCGTGTGGGCTTTTGAAAAGGTTGCCACCAAATCA-AGTGA
266 G
63 G
* * * * * * * *** *
267 CTTCTGAAAAGGTTGCCAACAACTTGTGTTGAC-TTT-ACAAAGGTTGCCACTAATTTGTGTGGG
1 CTT-TGAAAAGGTTACCACCAACTCGTGTGGGCTTTTGA-AAAGGTTGCCACCAAATCAAGTGAG
* * * * * * * * *
330 ATTTTAAAAAGGCTACCACCAACTCGTGTGGGATTTTGAAAAAGTTGCTAAC-AA-CATGTGTGG
1 -CTTTGAAAAGGTTACCACCAACTCGTGTGGGCTTTTGAAAAGGTTGCCACCAAATCAAGTG-AG
* ** * * * * ** ** *
393 ACTTTGAAAATGTTGTCACCTACTCGTGTGGGATTTTGAAATGTTTGCCACCAACGCATTTGGG
1 -CTTTGAAAAGGTTACCACCAACTCGTGTGGGCTTTTGAAAAGGTTGCCACCAAATCAAGTGAG
* * * * * * * * * ***
457 ATTTTGAAAAGGTTGCTACCAACTCATGTAGGCTTTTGAAAACGTTACCAACAACTTGTGTG-G
1 -CTTTGAAAAGGTTACCACCAACTCGTGTGGGCTTTTGAAAAGGTTGCCACCAAATCAAGTGAG
*** ** * ** * * *
520 ACTTTGAAAAGGTTGTTACCAACTC-TGCAGG-TTTTGAAAAAGTTGCTGCCAACTCGTA-TGCG
1 -CTTTGAAAAGGTTACCACCAACTCGTGTGGGCTTTTGAAAAGGTTGCCACCAAATC-AAGTGAG
* * * ** * * ***
582 ATTTTGAAAAGGTTTCCATCAACTCGTGTTTGCTTTTAAAAAGGTTGCCACCAACTTGTGTTGA-
1 -CTTTGAAAAGGTTACCACCAACTCGTGTGGGCTTTTGAAAAGGTTGCCACCAAATCAAG-TGAG
* * * * * *
646 CTTTGAAAAAGTTATCACCAATTCGTGTGGGCTTTTGAAAAGGTTGCGACCAACTCTCA-T-AG
1 CTTTGAAAAGGTTACCACCAACTCGTGTGGGCTTTTGAAAAGGTTGCCACCAAATC-AAGTGAG
* * * *
708 ACTTTTGAAAAGGTTGCCACCAACTCATGCGGGCTTTTAAAAAGGTT
1 -C-TTTGAAAAGGTTACCACCAACTCGTGTGGGCTTTTGAAAAGGTT
755 ATCACCAACT
Statistics
Matches: 519, Mismatches: 127, Indels: 63
0.73 0.18 0.09
Matches are distributed among these distances:
61 21 0.04
62 39 0.08
63 257 0.50
64 193 0.37
65 9 0.02
ACGTcount: A:0.28, C:0.18, G:0.23, T:0.31
Consensus pattern (63 bp):
CTTTGAAAAGGTTACCACCAACTCGTGTGGGCTTTTGAAAAGGTTGCCACCAAATCAAGTGAG
Found at i:178 original size:95 final size:95
Alignment explanation
Indices: 1--903 Score: 315
Period size: 95 Copynumber: 9.4 Consensus size: 95
* * * * * * * * *
1 CAACTCGTGTAGAC-TTTGAAAAGGTTACCACCAACAT-GTGTAGGCTTTTGAAACGGTTGCCAC
1 CAACTCGTATGGACTTTTGAAAAGGTTGCCACAAAC-TCATGTAGGATATTGAAAAGGTTGCCAA
* * *
64 CAAATCA-AGTGAGCTTTGAAAAGGTTACCAC
65 CAACT-AGTGTGGGCTTTGAAAAGGTTACCAC
* * * * * * *
95 CAATTCGTGTGGGCTTTTGAAAAGGTTGCCACAAATTCCTGTAGGCTATTGAAAAGGTTGCCAAT
1 CAACTCGTATGGACTTTTGAAAAGGTTGCCACAAACTCATGTAGGATATTGAAAAGGTTGCCAAC
* * * *
160 AACTCGTTTGGGCTTTGAAAAGGTTGCGAC
66 AACTAGTGTGGGCTTTGAAAAGGTTACCAC
* * * * *
190 CAACTCGTATGGACTTTTGCAAAGGTTGCCACCAACTCATGTGGGATTTTGAAAAGGTTGCCACC
1 CAACTCGTATGGACTTTTGAAAAGGTTGCCACAAACTCATGTAGGATATTGAAAAGGTTGCCAAC
* *
255 AACTAGTGTGGGCTTCTGAAAAGGTTGCCAA
66 AACTAGTGTGGGCTT-TGAAAAGGTTACCAC
* * * * * ** * * * * * *
286 CAACTTGTGTTGAC-TTT-ACAAAGGTTGCCACTAATTTGTGTGGGATTTTAAAAAGGCTACCAC
1 CAACTCGTATGGACTTTTGA-AAAGGTTGCCACAAACTCATGTAGGATATTGAAAAGGTTGCCAA
* * * * * *
349 CAACTCGTGTGGGATTTTGAAAAAGTTGCTAA
65 CAACTAGTGTGGG-CTTTGAAAAGGTTACCAC
* * * ** * * * * * *
381 CAACAT-GTGTGGAC-TTTGAAAATGTTGTCACCTACTCGTGTGGGATTTTGAAATGTTTGCCAC
1 CAAC-TCGTATGGACTTTTGAAAAGGTTGCCACAAACTCATGTAGGATATTGAAAAGGTTGCCAA
* * * * *
444 CAACGCA-TTTGGGATTTTGAAAAGGTTGCTAC
65 CAAC-TAGTGTGGG-CTTTGAAAAGGTTACCAC
* * ** *
476 CAACTCATGTA-GG-CTTTTGAAAACGTTACCA-ACAACTTGTGT-GGACT-TTGAAAAGGTTGT
1 CAACTC--GTATGGACTTTTGAAAAGGTTGCCACA-AACTCATGTAGGA-TATTGAAAAGGTTGC
* * * ** * * * **
536 TACCAACT-CTGCAGGTTTTGAAAAAGTTGCTGC
62 CAACAACTAGTGTGGGCTTTGAAAAGGTTACCAC
* * ** * * *
569 CAACTCGTATGCGA-TTTTGAAAAGGTTTCCATC-AACTCGTGTTTGCTTTTAAAAAGGTTGCCA
1 CAACTCGTATG-GACTTTTGAAAAGGTTGCCA-CAAACTCATGTAGGATATTGAAAAGGTTGCCA
* * * * * *
632 CCAACTTGTGTTGACTTTGAAAAAGTTATCAC
64 ACAACTAGTGTGGGCTTTGAAAAGGTTACCAC
* * * * * * *
664 CAATTCGTGTGGGCTTTTGAAAAGGTTGCGACCAACTC-TCATA-GACTTTTGAAAAGGTTGCCA
1 CAACTCGTATGGACTTTTGAAAAGGTTGCCACAAACTCAT-GTAGGA-TATTGAAAAGGTTGCCA
* * * *
727 CCAACTCA-TGCGGGCTTTTAAAAAGGTTATCAC
64 ACAACT-AGTGTGGGC-TTTGAAAAGGTTACCAC
* * * * *
760 CAACTCGTGTGGACTTTTTGGCTTTTAAAAATGTTGCAACCAACTCATGT-GGA-CTTGAAAAGG
1 CAACTCGTATGGAC-TTTT-G------AAAAGGTTGCCACAAACTCATGTAGGATATTGAAAAGG
* * * *
823 TTGCCATCAACTTA-TGTGGGCTTTAGAAAAGGCTGCCAT
58 TTGCCAACAAC-TAGTGTGGGCTTT-GAAAAGGTTACCAC
** * *
862 CAACT--TATGTCGGGTTTTGAAAATGTTGCCACCAACTCATGT
1 CAACTCGTATG--GACTTTTGAAAAGGTTGCCACAAACTCATGT
904 GGACTTTGAT
Statistics
Matches: 633, Mismatches: 132, Indels: 88
0.74 0.15 0.10
Matches are distributed among these distances:
91 3 0.00
92 1 0.00
93 47 0.07
94 61 0.10
95 362 0.57
96 78 0.12
97 6 0.01
98 1 0.00
100 4 0.01
101 7 0.01
102 41 0.06
103 1 0.00
104 20 0.03
105 1 0.00
ACGTcount: A:0.28, C:0.19, G:0.22, T:0.31
Consensus pattern (95 bp):
CAACTCGTATGGACTTTTGAAAAGGTTGCCACAAACTCATGTAGGATATTGAAAAGGTTGCCAAC
AACTAGTGTGGGCTTTGAAAAGGTTACCAC
Found at i:761 original size:127 final size:127
Alignment explanation
Indices: 1--1202 Score: 726
Period size: 127 Copynumber: 9.5 Consensus size: 127
* * * * *
1 CAACTCGTGTAGACTTTGAAAAGGTTACCACCAACAT-GTGTAGGCTTTTGAAACGGTTGCCACC
1 CAACTTGTGTGGACTTTGAAAAGGTTGCCACCAAC-TCGTGTGGGCTTTTGAAAAGGTTGCCACC
* * * * * * * *
65 AAATC--AAGTGAGCTTTGAAAAGGTTACCACCAATTCGTGTGGGCTTTTGAAAAGGTTGCCA-
65 AACTCGTATGGGA-TTTTGAAAAGGTTGCCACCAACTCATGTGGGCTTTTAAAAAGGTTGCCAC
* * ** * *
126 CAAATTCCTGTAGG-CTATTGAAAAGGTTGCCAATAACTCGTTTGGGC-TTTGAAAAGGTTGCGA
1 CAACTT-GTGT-GGACT-TTGAAAAGGTTGCCACCAACTCGTGTGGGCTTTTGAAAAGGTTGCCA
* * *
189 CCAACTCGTAT-GGACTTTTGCAAAGGTTGCCACCAACTCATGTGGGATTTTGAAAAGGTTGCCA
63 CCAACTCGTATGGGA-TTTTGAAAAGGTTGCCACCAACTCATGTGGGCTTTTAAAAAGGTTGCCA
253 C
127 C
* * * * * *
254 CAACTAGTGTGGGCTTCTGAAAAGGTTGCCAACAACTTGTGTTGAC-TTT-ACAAAGGTTGCCAC
1 CAACTTGTGTGGACTT-TGAAAAGGTTGCCACCAACTCGTGTGGGCTTTTGA-AAAGGTTGCCAC
* * * * * * * * * * *
317 TAATTTGTGTGGGATTTTAAAAAGGCTACCACCAACTCGTGTGGGATTTTGAAAAA-GTTGCTAA
64 CAACTCGTATGGGATTTTGAAAAGGTTGCCACCAACTCATGTGGGCTTTT-AAAAAGGTTGCCAC
* * * * * * *
381 CAACATGTGTGGACTTTGAAAATGTTGTCACCTACTCGTGTGGGATTTTGAAATGTTTGCCACCA
1 CAACTTGTGTGGACTTTGAAAAGGTTGCCACCAACTCGTGTGGGCTTTTGAAAAGGTTGCCACCA
* * * * * * * * *
446 ACGCATTTGGGATTTTGAAAAGGTTGCTACCAACTCATGTAGGCTTTTGAAAACGTTACCAA
66 ACTCGTATGGGATTTTGAAAAGGTTGCCACCAACTCATGTGGGCTTTTAAAAAGGTTGCCAC
** ** * **
508 CAACTTGTGTGGACTTTGAAAAGGTTGTTACCAACTC-TGCAGG-TTTTGAAAAAGTTGCTGCCA
1 CAACTTGTGTGGACTTTGAAAAGGTTGCCACCAACTCGTGTGGGCTTTTGAAAAGGTTGCCACCA
* * * * **
571 ACTCGTATGCGATTTTGAAAAGGTTTCCATCAACTCGTGTTTGCTTTTAAAAAGGTTGCCAC
66 ACTCGTATGGGATTTTGAAAAGGTTGCCACCAACTCATGTGGGCTTTTAAAAAGGTTGCCAC
* * ** * *
633 CAACTTGTGTTGACTTTGAAAAAGTTATCACCAATTCGTGTGGGCTTTTGAAAAGGTTGCGACCA
1 CAACTTGTGTGGACTTTGAAAAGGTTGCCACCAACTCGTGTGGGCTTTTGAAAAGGTTGCCACCA
* * **
698 ACTC-TCAT-AGACTTTTGAAAAGGTTGCCACCAACTCATGCGGGCTTTTAAAAAGGTTATCAC
66 ACTCGT-ATGGGA-TTTTGAAAAGGTTGCCACCAACTCATGTGGGCTTTTAAAAAGGTTGCCAC
* * * * *
760 CAACTCGTGTGGACTTTTTGGCTTTTAAAAATGTTGCAACCAACTCATGTGGAC--TTGAAAAGG
1 CAACTTGTGTGGAC--TTT-G------AAAAGGTTGCCACCAACTCGTGTGGGCTTTTGAAAAGG
* ** * * * * * * * *
823 TTGCCATCAACTTATGTGGGCTTTAGAAAAGGCTGCCATCAACTTATGTCGGG-TTTTGAAAATG
57 TTGCCACCAACTCGTATGGGATTTTGAAAAGGTTGCCACCAACTCATGT-GGGCTTTTAAAAAGG
887 TTGCCAC
121 TTGCCAC
** * * ** * * * * *
894 CAACTCATGTGGACTTTGATTATGG-TGCCACCAACTTTTATAGAC-TTTGAAAAGATTCCCACC
1 CAACTTGTGTGGACTTTGA-AAAGGTTGCCACCAACTCGTGTGGGCTTTTGAAAAGGTTGCCACC
*** * * * * * * * **** * *
957 AACTCACGTGGGCTTCTAAAAATGTTG---GCAACTCGTGTGGACTTTGGCTACGG-TGCTAC
65 AACTCGTATGGGATTTTGAAAAGGTTGCCACCAACTCATGTGGGCTTTTAAAAAGGTTGCCAC
* * * * * * * * * *
1016 AAACTCGTGTGAACTTTGAAAAGGTTGTCACAAACTCATGTAGGCTTTTAAAAAGGTTGCTACAA
1 CAACTTGTGTGGACTTTGAAAAGGTTGCCACCAACTCGTGTGGGCTTTTGAAAAGGTTGCCACCA
* * * * *
1081 ACAC--ATGTGGATTTTTGAAATGGTTACCACCAACTCGTGTGGGCTTTTAAAAAGGTTGCTAC
66 ACTCGTATG-GGA-TTTTGAAAAGGTTGCCACCAACTCATGTGGGCTTTTAAAAAGGTTGCCAC
* ** * * *
1143 CAACTCGTGTTATATTTTGAAAAGGTTGCCACCAACTCGTGTAGGATTTTGAAAAGGTTG
1 CAACTTGTG-TGGACTTTGAAAAGGTTGCCACCAACTCGTGTGGGCTTTTGAAAAGGTTG
1203 TTGTAGACAC
Statistics
Matches: 826, Mismatches: 208, Indels: 83
0.74 0.19 0.07
Matches are distributed among these distances:
121 5 0.01
122 39 0.05
123 40 0.05
125 115 0.14
126 121 0.15
127 348 0.42
128 55 0.07
129 3 0.00
130 1 0.00
131 1 0.00
132 3 0.00
134 70 0.08
135 5 0.01
136 20 0.02
ACGTcount: A:0.28, C:0.19, G:0.22, T:0.31
Consensus pattern (127 bp):
CAACTTGTGTGGACTTTGAAAAGGTTGCCACCAACTCGTGTGGGCTTTTGAAAAGGTTGCCACCA
ACTCGTATGGGATTTTGAAAAGGTTGCCACCAACTCATGTGGGCTTTTAAAAAGGTTGCCAC
Found at i:802 original size:40 final size:40
Alignment explanation
Indices: 739--815 Score: 111
Period size: 40 Copynumber: 1.9 Consensus size: 40
729 AACTCATGCG
* *
739 GGCTTTTAAAAAGGTTATCACCAACTCGTGTGGACTTTTT
1 GGCTTTTAAAAAGGTTAGCACCAACTCATGTGGACTTTTT
*
779 GGCTTTTAAAAATGTT-GCAACCAACTCATGTGGACTT
1 GGCTTTTAAAAAGGTTAGC-ACCAACTCATGTGGACTT
816 GAAAAGGTTG
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
39 1 0.03
40 32 0.97
ACGTcount: A:0.27, C:0.18, G:0.19, T:0.35
Consensus pattern (40 bp):
GGCTTTTAAAAAGGTTAGCACCAACTCATGTGGACTTTTT
Found at i:960 original size:94 final size:94
Alignment explanation
Indices: 782--988 Score: 213
Period size: 94 Copynumber: 2.2 Consensus size: 94
772 ACTTTTTGGC
* * * *
782 TTTTAAAAATGTTGCAACCAACTCATGTGGACTTGAAAAGGTTGCCATCAACTTATGTGGGCTTT
1 TTTTAAAAATGTTGCAACCAACTCATGTGGACTTGAAAAGGTTGCCACCAACTTATATAGACTTT
* * *
847 AGAAAAGGCTGCCATCAACTTATGTCGGG
66 AGAAAAGACTCCCACCAACTTATGTCGGG
* * * * *
876 TTTTGAAAATGTTGCCACCAACTCATGTGGACTTTGATTATGG-TGCCACCAACTTTTATAGACT
1 TTTTAAAAATGTTGCAACCAACTCATGTGGAC-TTGA-AAAGGTTGCCACCAACTTATATAGACT
* * *
940 TT-GAAAAGATTCCCACCAACTCACGT-GGG
64 TTAGAAAAGACTCCCACCAACTTATGTCGGG
*
969 CTTCTAAAAATGTTGGCAAC
1 -TTTTAAAAATGTT-GCAAC
989 TCGTGTGGAC
Statistics
Matches: 91, Mismatches: 18, Indels: 7
0.78 0.16 0.06
Matches are distributed among these distances:
93 3 0.03
94 59 0.65
95 26 0.29
96 3 0.03
ACGTcount: A:0.29, C:0.20, G:0.20, T:0.30
Consensus pattern (94 bp):
TTTTAAAAATGTTGCAACCAACTCATGTGGACTTGAAAAGGTTGCCACCAACTTATATAGACTTT
AGAAAAGACTCCCACCAACTTATGTCGGG
Found at i:1598 original size:53 final size:52
Alignment explanation
Indices: 1500--1600 Score: 123
Period size: 53 Copynumber: 1.9 Consensus size: 52
1490 TACATTACTC
** ** *
1500 AATGTATCGATACATTTGATCTTTGTATCGATACATTTGGGAAATTTTACCCA
1 AATGTATCGATACATTT-ATCACTGTATCGATACATCAGGCAAATTTTACCCA
1553 AATGTATCGATACA-TTATTCACTGTATCGATACATGCAGGCAAATTTT
1 AATGTATCGATACATTTA-TCACTGTATCGATACAT-CAGGCAAATTTT
1601 CATATTTCGG
Statistics
Matches: 41, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
51 1 0.02
52 17 0.41
53 23 0.56
ACGTcount: A:0.32, C:0.16, G:0.15, T:0.38
Consensus pattern (52 bp):
AATGTATCGATACATTTATCACTGTATCGATACATCAGGCAAATTTTACCCA
Found at i:4706 original size:31 final size:31
Alignment explanation
Indices: 4645--5640 Score: 525
Period size: 32 Copynumber: 31.5 Consensus size: 31
4635 CGTTACGACA
* *
4645 GTTGCCACCAACACGTGTGGGCATTTGAAAAG
1 GTTGCCACCAACTCGTGTGGAC-TTTGAAAAG
* *
4677 GTTGCCAACAACTTGTGTGGACTTTGAAAAG
1 GTTGCCACCAACTCGTGTGGACTTTGAAAAG
* * *
4708 GTTGTCATCAACTCGTGTGGGCTTTTGAAAAG
1 GTTGCCACCAACTCGTGTGGAC-TTTGAAAAG
** ****
4740 GTTGCCACCAACTTTTACAAACTTTTGAAAAG
1 GTTGCCACCAACTCGTGTGGAC-TTTGAAAAG
* *
4772 GTAT-CCACCAACTTGTGTGGACTTTGAAATG
1 GT-TGCCACCAACTCGTGTGGACTTTGAAAAG
* * *
4803 GTTGCCACCTACTTGTGTGGGCTTTTGGGCTTTTGAAAAG
1 GTTGCCACCAAC-T-CGT--G----TGGAC-TTTGAAAAG
* * * * *
4843 GTTGACACCAACTCTTATAGACTTTTG-AATG
1 GTTGCCACCAACTCGTGTGGAC-TTTGAAAAG
** **
4874 GTTGCCATTAACTCAAGTGGACTTTGAAATA-
1 GTTGCCACCAACTCGTGTGGACTTTGAAA-AG
* * * * *
4905 ATTACCACCAATTCATGTGGATTTTTGAAAAG
1 GTTGCCACCAACTCGTGTGGA-CTTTGAAAAG
*
4937 ATTGCCACCAACTCGTGTGG-CTTTTTGAAAAG
1 GTTGCCACCAACTCGTGTGGAC--TTTGAAAAG
* * **
4969 GTTGCCACCAACTCTTATGGGTTTTTGAAAAG
1 GTTGCCACCAACTCGTGT-GGACTTTGAAAAG
* ** * * *
5001 GTTGCCAACAACAAGT-TTGAGCTTTCAAAAA
1 GTTGCCACCAACTCGTGTGGA-CTTTGAAAAG
* *
5032 GTTGCCACCAACTCATGTGGACATTTGCAAAG
1 GTTGCCACCAACTCGTGTGGAC-TTTGAAAAG
* * * * *
5064 CTTACCACTAACTCGTGTAGG-CTTTTAAAAAT
1 GTTGCCACCAACTCGTGT-GGAC-TTTGAAAAG
* * * *
5096 GTTGCTACTAACTTGTGTGGGATTTTG-AAAG
1 GTTGCCACCAACTCGTGT-GGACTTTGAAAAG
* *
5127 GTTGCCACCAACACGTGTGGGATTTTGAAAAAG
1 GTTGCCACCAACTCGTGT-GGACTTTG-AAAAG
* *
5160 GTTGCCACCAACTCGTATGGGCTTTTGAAAAG
1 GTTGCCACCAACTCGTGTGGAC-TTTGAAAAG
* * * * *
5192 GTTGCCAACAGCTTGTATAGG-CTTTGAAATG
1 GTTGCCACCAACTCGTGT-GGACTTTGAAAAG
* *
5223 GTTGTCACCAACTCGTGTGGGATTTTGAAAAG
1 GTTGCCACCAACTCGTGT-GGACTTTGAAAAG
* * * * * * *
5255 TTTTCCACCAACGCATTTGGGATTTTGAAAAC
1 GTTGCCACCAACTCGTGT-GGACTTTGAAAAG
* * *
5287 GTTGCCAGCAACTCATGTGGGCTTCTGAAAAG
1 GTTGCCACCAACTCGTGTGGACTT-TGAAAAG
* * * * * *
5319 GTTGCCCCCAAACTCCTTTGGACATTGACTATG
1 GTTGCCACC-AACTCGTGTGGACTTTGA-AAAG
* * * * *
5352 G-TGCCACCAACTGGTATAGACATTGGAAAG
1 GTTGCCACCAACTCGTGTGGACTTTGAAAAG
* *
5382 CTTGCCACCAACTCGTGTAGACTTTGAAAAG
1 GTTGCCACCAACTCGTGTGGACTTTGAAAAG
*** * * * *
5413 GTTTTTACCAATTCGTGCGGGCTTTTGAAAAA
1 GTTGCCACCAACTCGTGTGGAC-TTTGAAAAG
* * * *
5445 GCTGCCACTAACTCGTGTGGACTTTGACTATG
1 GTTGCCACCAACTCGTGTGGACTTTGA-AAAG
* * * * *
5477 G-AGCCAGCAACACGTATGGACTTTAAAAAG
1 GTTGCCACCAACTCGTGTGGACTTTGAAAAG
*
5507 ATTGCCACCAACTC-TGTGGACTTTGAAAAG
1 GTTGCCACCAACTCGTGTGGACTTTGAAAAG
* * * *
5537 GTTACCACTAACT--TGT-G-TTTTGAAAAA
1 GTTGCCACCAACTCGTGTGGACTTTGAAAAG
5564 GTTGCCACCAACT-GTGTGGACTTTGACAATA-
1 GTTGCCACCAACTCGTGTGGACTTTGA-AA-AG
* *
5595 G-TGCCACCAACTCATGTGGACTTTAAAAAG
1 GTTGCCACCAACTCGTGTGGACTTTGAAAAG
*
5625 GTTGCCACTAACTCGT
1 GTTGCCACCAACTCGT
5641 AAGTTGCCAC
Statistics
Matches: 727, Mismatches: 192, Indels: 91
0.72 0.19 0.09
Matches are distributed among these distances:
27 19 0.03
28 4 0.01
29 5 0.01
30 53 0.07
31 265 0.36
32 308 0.42
33 48 0.07
35 1 0.00
38 1 0.00
39 5 0.01
40 18 0.02
ACGTcount: A:0.28, C:0.20, G:0.22, T:0.30
Consensus pattern (31 bp):
GTTGCCACCAACTCGTGTGGACTTTGAAAAG
Found at i:4737 original size:63 final size:63
Alignment explanation
Indices: 4645--5637 Score: 515
Period size: 63 Copynumber: 15.7 Consensus size: 63
4635 CGTTACGACA
* * *
4645 GTTGCCACCAACACGTGTGGGCATTTGAAAAGGTTGCCAACAACTTGTGTGGACTTTGAAAAG
1 GTTGCCACCAACTCGTGTGGGCTTTTGAAAAGGTTGCCACCAACTTGTGTGGACTTTGAAAAG
* * * ****
4708 GTTGTCATCAACTCGTGTGGGCTTTTGAAAAGGTTGCCACCAACTTTTACAAACTTTTGAAAAG
1 GTTGCCACCAACTCGTGTGGGCTTTTGAAAAGGTTGCCACCAACTTGTGTGGAC-TTTGAAAAG
* * * * *
4772 GTAT-CCACCAACTTGTGTGGAC-TTTGAAATGGTTGCCACCTACTTGTGTGGGCTTTTGGGCTT
1 GT-TGCCACCAACTCGTGTGGGCTTTTGAAAAGGTTGCCACCAAC-T-TGT--G----TGGAC-T
4835 TTGAAAAG
56 TTGAAAAG
* * * * * * ** ***
4843 GTTGACACCAACTCTTATAGACTTTTG-AATGGTTGCCATTAACTCAAGTGGACTTTGAAATA-
1 GTTGCCACCAACTCGTGTGGGCTTTTGAAAAGGTTGCCACCAACTTGTGTGGACTTTGAAA-AG
* * * * ** * *
4905 ATTACCACCAATTCATGTGGATTTTTGAAAAGATTGCCACCAACTCGTGTGG-CTTTTTGAAAAG
1 GTTGCCACCAACTCGTGTGGGCTTTTGAAAAGGTTGCCACCAACTTGTGTGGAC--TTTGAAAAG
* * * * ** * * *
4969 GTTGCCACCAACTCTTATGGGTTTTTGAAAAGGTTGCCAACAACAAGT-TTGAGCTTTCAAAAA
1 GTTGCCACCAACTCGTGTGGGCTTTTGAAAAGGTTGCCACCAACTTGTGTGGA-CTTTGAAAAG
* * * * * * * * * *
5032 GTTGCCACCAACTCATGTGGACATTTGCAAAGCTTACCACTAACTCGTGTAGG-CTTTTAAAAAT
1 GTTGCCACCAACTCGTGTGGGCTTTTGAAAAGGTTGCCACCAACTTGTGT-GGAC-TTTGAAAAG
* * * * ** *
5096 GTTGCTACTAACTTGTGTGGGATTTTG-AAAGGTTGCCACCAACACGTGTGGGATTTTGAAAAAG
1 GTTGCCACCAACTCGTGTGGGCTTTTGAAAAGGTTGCCACCAACTTGTGT-GGACTTTG-AAAAG
* * * * *
5160 GTTGCCACCAACTCGTATGGGCTTTTGAAAAGGTTGCCAACAGCTTGTATAGG-CTTTGAAATG
1 GTTGCCACCAACTCGTGTGGGCTTTTGAAAAGGTTGCCACCAACTTGTGT-GGACTTTGAAAAG
* * * * *
5223 GTTGTCACCAACTCGTGTGGGATTTTGAAAAGTTTTCCACCAACGCATT-TG-GGATTTTGAAAA
1 GTTGCCACCAACTCGTGTGGGCTTTTGAAAAGGTTGCCACCAA--C-TTGTGTGGACTTTGAAAA
*
5286 C
63 G
* * * * ** * * * *
5287 GTTGCCAGCAACTCATGTGGGCTTCTGAAAAGGTTGCCCCCAAACTCCTTTGGACATTGACTATG
1 GTTGCCACCAACTCGTGTGGGCTTTTGAAAAGGTTGCCACC-AACTTGTGTGGACTTTGA-AAAG
* * * * * * * * *
5352 G-TGCCACCAACTGGTATAGAC-ATTGGAAAGCTTGCCACCAACTCGTGTAGACTTTGAAAAG
1 GTTGCCACCAACTCGTGTGGGCTTTTGAAAAGGTTGCCACCAACTTGTGTGGACTTTGAAAAG
*** * * * * * * * *
5413 GTTTTTACCAATTCGTGCGGGCTTTTGAAAAAGCTGCCACTAACTCGTGTGGACTTTGACTATG
1 GTTGCCACCAACTCGTGTGGGCTTTTGAAAAGGTTGCCACCAACTTGTGTGGACTTTGA-AAAG
* * * * * * * *
5477 G-AGCCAGCAACACGTATGGAC-TTTAAAAAGATTGCCACCAAC-TCTGTGGACTTTGAAAAG
1 GTTGCCACCAACTCGTGTGGGCTTTTGAAAAGGTTGCCACCAACTTGTGTGGACTTTGAAAAG
* * *
5537 GTTACCACTAACT--TGT--G-TTTTGAAAAAGTTGCCACCAAC-TGTGTGGACTTTGACAATA-
1 GTTGCCACCAACTCGTGTGGGCTTTTGAAAAGGTTGCCACCAACTTGTGTGGACTTTGA-AA-AG
* * * *
5595 G-TGCCACCAACTCATGTGGAC-TTTAAAAAGGTTGCCACTAACT
1 GTTGCCACCAACTCGTGTGGGCTTTTGAAAAGGTTGCCACCAACT
5638 CGTAAGTTGC
Statistics
Matches: 683, Mismatches: 201, Indels: 93
0.70 0.21 0.10
Matches are distributed among these distances:
57 40 0.06
58 3 0.00
59 6 0.01
60 3 0.00
61 39 0.06
62 69 0.10
63 252 0.37
64 193 0.28
65 30 0.04
66 2 0.00
67 1 0.00
70 2 0.00
71 39 0.06
72 4 0.01
ACGTcount: A:0.28, C:0.20, G:0.22, T:0.30
Consensus pattern (63 bp):
GTTGCCACCAACTCGTGTGGGCTTTTGAAAAGGTTGCCACCAACTTGTGTGGACTTTGAAAAG
Found at i:5037 original size:95 final size:95
Alignment explanation
Indices: 4932--12422 Score: 1056
Period size: 95 Copynumber: 78.9 Consensus size: 95
4922 TGGATTTTTG
* * *
4932 AAAAGATTGCCACCAACTCGTGTGGCTTTTTGAAAAGGTTGCCACCAACTCTTATGGGTTTTTGA
1 AAAAG-TTGCCACCAACTCGTGTGGCATTTTGAAAAGGTTGCCACCAACTCGTATGGGCTTTTGA
** *
4997 AAAGGTTGCCAACAACAAGTTTGAGCTTTCA
65 AAAGGTTGCCAACAACTTGTATGAGCTTTCA
* * * * * * * *
5028 AAAAGTTGCCACCAACTCATGTGGACA-TTTGCAAAGCTTACCACTAACTCGTGTAGGCTTTTAA
1 AAAAGTTGCCACCAACTCGTGTGG-CATTTTGAAAAGGTTGCCACCAACTCGTATGGGCTTTTGA
* * * * * **
5092 AAATGTTG-CTACTAACTTGTGTGGGATTTTG
65 AAAGGTTGCCAAC-AACTTGTATGAGCTTTCA
* * *
5123 AAAGGTTGCCACCAACACGTGTGGGATTTTGAAAAAGGTTGCCACCAACTCGTATGGGCTTTTGA
1 AAAAGTTGCCACCAACTCGTGTGGCATTTTG-AAAAGGTTGCCACCAACTCGTATGGGCTTTTGA
* *
5188 AAAGGTTGCCAACAGCTTGTAT-AGGCTTTGA
65 AAAGGTTGCCAACAACTTGTATGA-GCTTTCA
** * * * * * * * *
5219 AATGGTTGTCACCAACTCGTGTGGGATTTTGAAAAGTTTTCCACCAACGCATTTGGGATTTTGAA
1 AAAAGTTGCCACCAACTCGTGTGGCATTTTGAAAAGGTTGCCACCAACTCGTATGGGCTTTTGAA
* * ** * * *
5284 AACGTTGCCAGCAACTCATGTGGGCTTCTGA
66 AAGGTTGCCAACAACTTGTATGAGCTT-TCA
* * * * * * * * * *
5315 AAAGGTTGCCCCCAAACTCCTTTGGACA--TTGACTATGG-TGCCACCAACTGGTATAGAC-ATT
1 AAAAGTTGCCACC-AACTCGTGTGG-CATTTTGA-AAAGGTTGCCACCAACTCGTATGGGCTTTT
* * * *
5376 GGAAAGCTTGCCACCAACTCGTGTA-GA-CTTTGA
63 GAAAAGGTTGCCAACAACT--TGTATGAGCTTTCA
* *** * * * * * * *
5409 AAAGGTTTTTACCAATTCGTGCGGGC-TTTTGAAAAAGCTGCCACTAACTCGTGTGGAC-TTTGA
1 AAAAGTTGCCACCAACTCGTG-TGGCATTTTGAAAAGGTTGCCACCAACTCGTATGGGCTTTTGA
* * * * **
5472 CTATGG-AGCCAGCAACACGTATG-GACTTT-A
65 -AAAGGTTGCCAACAACTTGTATGAG-CTTTCA
* * * *
5502 AAAAGATTGCCACCAACTC-TGTGG-ACTTTGAAAAGGTTACCACTAA--C-T-TGTG-TTTTGA
1 AAAAG-TTGCCACCAACTCGTGTGGCATTTTGAAAAGGTTGCCACCAACTCGTATGGGCTTTTGA
* * * *
5560 AAAAGTTGCCACCAAC-TGTGTG-GACTTTGA
65 AAAGGTTGCCAACAACTTGTATGAG-CTTTCA
* * * * *
5590 CAATAG-TGCCACCAACTCATGTGG-ACTTTAAAAAGGTTGCCACTAACTC------G----T--
1 -AAAAGTTGCCACCAACTCGTGTGGCATTTTGAAAAGGTTGCCACCAACTCGTATGGGCTTTTGA
* * * * * *
5641 -AA-GTTGCCACCAATTCGTGTGGA-TTTTGA
65 AAAGGTTGCCAACAACTTGTAT-GAGCTTTCA
** * * ** * * * *
5670 AAAGTTTGCCACCAACTTGTGTGGGC-TTTTTAAAATATTG-TACCAACTCGTGTAGAC-TTTGA
1 AAAAGTTGCCACCAACTCGTGT-GGCATTTTGAAAAGGTTGCCACCAACTCGTATGGGCTTTTGA
* * ** *
5732 AAAGGTTACCACCAACACGT-T-AGGCTTTTGA
65 AAAGGTTGCCAACAACTTGTATGA-GC-TTTCA
** * * * * *
5763 AACGGTTGCCACCAAATTAAGTG-GGC--TTTGAAAAGGTTACCACCAATTCGTGTGGGCTTTTG
1 AAAAGTTGCCACC-AACT-CGTGTGGCATTTTGAAAAGGTTGCCACCAACTCGTATGGGCTTTTG
** * *
5825 AAAAGGTTGCCGCCAA-TTCCTAT-AGGCTTTTA
64 AAAAGGTTGCCAACAACTT-GTATGA-GCTTTCA
** * * * * *
5857 AAAAGGTTGCCAATATCTCGTTTAGG--TTTTGAAAAGGTTACGACCAACTCGTATGGACTTTT-
1 AAAA-GTTGCCACCAACTCGTGT-GGCATTTTGAAAAGGTTGCCACCAACTCGTATGGGCTTTTG
* * * * *
5919 ACAGAA-GTTGCCACCAACTCGTGTGGGCTTTTGA
64 A-A-AAGGTTGCCAACAACTTGTATGAGC-TTTCA
* * * * * *
5953 AAAGGTTGCTACCAACTCGTGTGGGATTTTGAAAAGGTTGCCACCAACTCATGTGGGATTTTGAA
1 AAAAGTTGCCACCAACTCGTGTGGCATTTTGAAAAGGTTGCCACCAACTCGTATGGGCTTTTGAA
* * * *
6018 AAGATTGCCACCAACTCGTATGAGCTTTTGA
66 AAGGTTGCCAACAACTTGTATGAGC-TTTCA
* * * * * * * * *
6049 AAAGGTTGCCAACAACTTGTGTGG-ACTCTAAAAAGGTTGTCACCAACTCGTGTGGGATTTTGAA
1 AAAAGTTGCCACCAACTCGTGTGGCATTTTGAAAAGGTTGCCACCAACTCGTATGGGCTTTTGAA
* * * *
6113 AAGGTTGCCATCAACTCGTATGGGCTTTGA
66 AAGGTTGCCAACAACTTGTATGAGCTTTCA
* * * * * * * * * * * *
6143 GAAGGTTACCACTAACTCGTGTGG-ACTTCGACTATGG-TGCCGCCAACTTGTGTGGAC-TTTGA
1 AAAAGTTGCCACCAACTCGTGTGGCATTTTGA-AAAGGTTGCCACCAACTCGTATGGGCTTTTGA
* * *
6205 AAAGATTGCCAACAACTTACGTGT-A-CTTTGA
65 AAAGGTTGCCAACAACTT--GTATGAGCTTTCA
* * * * * * **
6236 AAAATTTACCACAAACTCATGTGGGC-TTTT-AATAGGTTGCCACCAACTCGTGTGAAC-TTT-A
1 AAAAGTTGCCACCAACTCGTGT-GGCATTTTGAAAAGGTTGCCACCAACTCGTATGGGCTTTTGA
* * * * * * *
6297 ACTATGG-TACCATCAACTTTTGTGCGCTTTGA
65 A--AAGGTTGCCAACAACTTGTATGAGCTTTCA
* * * * * * **
6329 AAAGGTTACCACCAA--C-T-T-G-----T----AGGTTGCCACCAACTCTTGTGGACATTGAAA
1 AAAAGTTGCCACCAACTCGTGTGGCATTTTGAAAAGGTTGCCACCAACTCGTATGGGCTTTTGAA
** * ** * *
6380 AGTTTGTCGCCAA-TTCATGTA-G-GCTTTTGA
66 A--AGGTTGCCAACAACTTGTATGAGC-TTTCA
* * * * * * * * *
6410 AAATGTTGCCACCAACACGTG-GGGACTTTGACTATGG-TGCCACCAACTTGTATTAGAC-TTTG
1 AAAAGTTGCCACCAACTCGTGTGGCATTTTGA-AAAGGTTGCCACCAACTCGTA-TGGGCTTTTG
* * *
6472 AAAAGGTTGCCACCAACTCT-TGTGGGC-TTCTA
64 AAAAGGTTGCCAACAACT-TGTATGAGCTTTC-A
* * * * * * * * *
6504 AAAATGTTGCC-CCTAACTCATTTGG-ACTTTGACTATGG-TGCCACCAACTTGTATAGACTTTG
1 AAAA-GTTGCCACC-AACTCGTGTGGCATTTTGA-AAAGGTTGCCACCAACTCGTATGGGCTTTT
* * *
6566 GAAAA-CTTGCCACCAACTCGTGTA-GA-CTTTGA
63 GAAAAGGTTGCCAACAACT--TGTATGAGCTTTCA
* * * * *
6598 AAAGGTTACCACCAACTCGCT-AGGC-TTTTGAAAAGGTTGCTACCAACTCGTTTGGGCTTTTGA
1 AAAAGTTGCCACCAACTCG-TGTGGCATTTTGAAAAGGTTGCCACCAACTCGTAT--G-----G-
* * * *
6661 GCTTTTGAAAAGATTGCCAATAACTCT-TGTG-GACTTT-T
57 GCTTTTGAAAAGGTTGCCAACAACT-TGTATGAG-CTTTCA
* * ** * * * * * * **
6699 GAAAGACTGCCATTAACTCATGTGG-ACTTTGAAATGGTTGCCACAAATTCGTGTGGATTTTTGA
1 AAAAG-TTGCCACCAACTCGTGTGGCATTTTGAAAAGGTTGCCACCAACTCGTATGGGCTTTTGA
* * * * * * **
6763 ATAGGTTACCACCAACTCGTGTG-GTTTTTTG
65 AAAGGTTGCCAACAACTTGTATGAG-CTTTCA
* * * * ** * * ** ** * * *
6794 AAAAGTTTACTACCAACTCATTTGGTTTTTTGAAATGGTTACCATTAACTTATGTGGGCCTTCG-
1 AAAAG-TTGCCACCAACTCGTGTGGCATTTTGAAAAGGTTGCCACCAACTCGTATGGGCTTTTGA
* * * * *
6858 AAAGGTTGCTACCAACTTGTGTG-GATTTTA
65 AAAGGTTGCCAACAACTTGTATGAGCTTTCA
* * * * * *
6888 AAAAGGTTACCACGAACTCGTGCGAG-ATTTTGAAAAGGTTGCCACC-ACACATGTGGGCTTTTG
1 AAAA-GTTGCCACCAACTCGTGTG-GCATTTTGAAAAGGTTGCCACCAACTCGTATGGGCTTTTG
* * *
6951 AAAAGGTTGCCAACAACTTCTGTG-GACTTTGA
64 AAAAGGTTGCCAACAACTTGTATGAG-CTTTCA
* * * ** *
6983 AAAAGTTGTCACCAACTCGTGTGGGC-TTTTGAAGAGGTTGCCACCAACTCTTACAGACTTTTGA
1 AAAAGTTGCCACCAACTCGTGT-GGCATTTTGAAAAGGTTGCCACCAACTCGTATGGGCTTTTGA
* * *
7047 AAAGGTAT-CCACCTACATA-TGTGGGCTTTTGGGCTTTTGA
65 AAAGGT-TGCCA---ACA-ACT-T--G--TATGAGC-TTTCA
* * * * * * ** * * *
7087 AAAGGTTGACACCAACTCTTATGG-ACTTTTG-AACGGTTGCTATTAACTCATGTGGAC-TTTGA
1 AAAAGTTGCCACCAACTCGTGTGGCA-TTTTGAAAAGGTTGCCACCAACTCGTATGGGCTTTTGA
* * * * * ** *
7149 AATGGTTACCACCAATTCATGT-GGATTTTTGA
65 AAAGGTTGCCAACAA--CTTGTATGAGCTTTCA
* *
7181 AAAGGTTGCCACCAACTC-TGTGG-ATTTTTGAAAAGGTTGCCACCAACTCCTATGGGCTTTTGA
1 AAAAGTTGCCACCAACTCGTGTGGCA-TTTTGAAAAGGTTGCCACCAACTCGTATGGGCTTTTGA
** * *
7244 AAAGGTTGCCAACAACTCATTTGGGCTTTCA
65 AAAGGTTGCCAACAACTTGTATGAGCTTTCA
* * * * ** *
7275 AAAGGTTGCCACCAACTCGTGTGGACA-TTTGTAAAGCTTACCACCAACTCGTGGGGGATTTTG-
1 AAAAGTTGCCACCAACTCGTGTGG-CATTTTGAAAAGGTTGCCACCAACTCGTATGGGCTTTTGA
* * * * * *
7338 AAAGGTTGCCAGCAACTCGTGTGGGATTTTGA
65 AAAGGTTGCCAACAACTTGTATGAG-CTTTCA
* * * ** * * * *
7370 AAATGTTGCTAGCAACTCGTGTGGGTTTTTGAAAAGGTTGCCAACAGCTTG-AGTGGAC-TTTGA
1 AAAAGTTGCCACCAACTCGTGTGGCATTTTGAAAAGGTTGCCACCAACTCGTA-TGGGCTTTTGA
* * * * * * **
7433 AATGGTTGTCACCAACTCGTGTGAGATTTTG
65 AAAGGTTGCCAACAACTTGTATGAGCTTTCA
* * ** * * * *
7464 AAAAGTTTGCCACCAACGCATGTAGG-ATTTCAAAAATGTTACCACCAATTCGTGTGTGGGCTTT
1 AAAAG-TTGCCACCAACTCGTGT-GGCATTTTGAAAAGGTTGCCACCAACTC--GTATGGGCTTT
* *
7528 TGAAAAAGTTGCCAACAACTTGTGTG-GAC-TTCGA
62 TGAAAAGGTTGCCAACAACTTGTATGAG-CTTTC-A
* ** * * * * * *
7562 AAAGGTTGCCAATAACTCTTGTAG-ACTTTTGAAAAAGTTGCCACCAACTCGTGTAGAC-TTT-A
1 AAAAGTTGCCACCAACTCGTGTGGCA-TTTTGAAAAGGTTGCCACCAACTCGTATGGGCTTTTGA
* * * *
7624 AAATGGTTGTCACCAACTCGTGTGGGCATTTGGGCTTTTGA
65 AAA-GGTTGCCAACAACT--TGT----A--TGAGC-TTTCA
* * * * * * *
7665 AAAGGTTACCACCAACTCTTTTAGGC-TTTTG-AAAGGTTGCCATCAACTCGTGTGGAC-TTTGA
1 AAAAGTTGCCACCAACTCGTGT-GGCATTTTGAAAAGGTTGCCACCAACTCGTATGGGCTTTTGA
* * * * * *
7727 AATGGTTGCCACCAACTAGTGTG-GACATTGA
65 AAAGGTTGCCAACAACTTGTATGAG-CTTTCA
** * * * * * * * *
7758 AAGGGTTGCCACCAATTAGTTTGTGC-TTTTGAAAAGGTTGCCAGCAGCTCATGTGGAC-TTTGA
1 AAAAGTTGCCACCAACTCGTGTG-GCATTTTGAAAAGGTTGCCACCAACTCGTATGGGCTTTTGA
* ** * * *
7821 AAAGTTTGCC-ACTAACTCATAGGGGCTTTGA
65 AAAGGTTGCCAAC-AACTTGTATGAGCTTTCA
* ** * * * * * * * *
7852 AAAAGTTACC-TTAACTTGTGTGG-AATTTGAAAAGGTTGCTATCAACTTGTGTGGCCTTTTAAA
1 AAAAGTTGCCACCAACTCGTGTGGCATTTTGAAAAGGTTGCCACCAACTCGTATGGGCTTTTGAA
** * * * *
7915 AAGGCAGCCAACAACTCGTGTGGGCTTT-T
66 AAGGTTGCCAACAACTTGTATGAGCTTTCA
* * * * *
7944 GAAAGATTGCCACCAACTCATGTGG-ACTTTGAAAAGGTTGCCACTAACTCGTATGTGC-TTTGA
1 AAAAG-TTGCCACCAACTCGTGTGGCATTTTGAAAAGGTTGCCACCAACTCGTATGGGCTTTTGA
* * ** *
8007 AAAGGTTACCACCAACTCCTATG-GACTTTGA
65 AAAGGTTGCCAACAACTTGTATGAG-CTTTCA
* * * ***
8038 AAAGGTTGCCATCAACTCGTGTAGG--TTTTTAAAAGGGCAACCACCAACTCGTATGGGCTTTTG
1 AAAAGTTGCCACCAACTCGTGT-GGCATTTTGAAAA-GGTTGCCACCAACTCGTATGGGCTTTTG
*
8101 AAAAGGTTGCCACCAACTCATGTA-G-GCTTTCGA
64 AAAAGGTTGCCAACAACT--TGTATGAGCTTTC-A
* * * * * * *
8134 AAATA-ATACCACCAA-TGCGTGTGG-ACTTTGACTATAGG--GCCACCAACTTGTATAGAC-TT
1 AAA-AGTTGCCACCAACT-CGTGTGGCATTTTGA--AAAGGTTGCCACCAACTCGTATGGGCTTT
** * ** * *
8193 TGAAAATATTGCCACCTGCTCGTATGAGCATTTGA
62 TGAAAAGGTTGCCAACAACTTGTATGAGC-TTTCA
* * * * * * * *
8228 AAAGGTTAG-CACCAACTCGTGT-GAACTTTGAAATGGTTGCCTCCAACTAGTGTGGACTTTTGA
1 AAAAGTT-GCCACCAACTCGTGTGGCATTTTGAAAAGGTTGCCACCAACTCGTATGGGCTTTTGA
* *
8291 AATGGTTGCCACCAACTCGTGTAT-A-CTTT-A
65 AAAGGTTGCCAACAACT--TGTATGAGCTTTCA
* * * *
8321 AAAATGTTGCTACCAACTCGTGTTGGC--TATAAAAAGGTTGCCACCAACTCG--TGCGGATTTT
1 AAAA-GTTGCCACCAACTCGTG-TGGCATTTTGAAAAGGTTGCCACCAACTCGTATG-GGCTTTT
* *
8382 GAAAAGGTTGCCATCAACTCGTGTA-G-GCTTTTA
63 GAAAAGGTTGCCAACAACT--TGTATGAGCTTTCA
* * * * * * * *
8415 AAAAGGCTGCCATCAACTCGTGTAGGC-TTTTAAAAAGGCTGCCATCAACTCGTGTAGGCTTTTA
1 AAAA-GTTGCCACCAACTCGTGT-GGCATTTTGAAAAGGTTGCCACCAACTCGTATGGGCTTTTG
* * * * * *
8479 AAAAAGCTGCCATCAACTAGTGTG-GACTTTGA
64 AAAAGGTTGCCAACAACTTGTATGAG-CTTTCA
* * ** * * * * * * * *
8511 AAAGGTTGCCCCCAACGAGTATGG-ACTTTTGAAAAGATTACCACAAACTTGTGTGGAC-ATTGA
1 AAAAGTTGCCACCAACTCGTGTGGCA-TTTTGAAAAGGTTGCCACCAACTCGTATGGGCTTTTGA
* * *
8574 CAAGGTTGCC-ACTAACTCG--TGCAGGCTTT-G
65 AAAGGTTGCCAAC-AACTTGTATG-A-GCTTTCA
* * * * * * * *
8604 AAAAGTTACCACCAACTCGTGTGTAG-ACTTTGAAAAGGTTGCCATCAAGTCATGTGGGCATTTA
1 AAAAGTTGCCACCAACTCGTGTG--GCATTTTGAAAAGGTTGCCACCAACTCGTATGGGCTTTTG
* * * * * *
8668 AAAAGGCTGCCACCAACTCGTGTGGGCTTTTAA
64 AAAAGGTTGCCAACAACTTGTATGAGC-TTTCA
* ** * * ** ** * * *
8701 AAAAGTTACCACCATTTCGTGCGGGC-TTTTAAAAATTTTGCCTTCAACTTGTGTGGAC-TTTGA
1 AAAAGTTGCCACCAACTCGTG-TGGCATTTTGAAAAGGTTGCCACCAACTCGTATGGGCTTTTGA
* * *
8764 ATATGG-TGCCACCAACTTGTAT-AGACTTTGA
65 A-AAGGTTGCCAACAACTTGTATGAG-CTTTCA
* * ** * * * * * *
8795 AAAGGTTACCACCAACTTATGAAGGC-TTCTGGAAAGGTTGCCACCTACTCGTGTGGAC-TTTGA
1 AAAAGTTGCCACCAACTCGTG-TGGCATTTTGAAAAGGTTGCCACCAACTCGTATGGGCTTTTGA
* * *
8858 CTATAGG--G-CAATCAACTTGTGT-AGACTTTGA
65 --AAAGGTTGCCAA-CAACTTGTATGAG-CTTTCA
* ** * * * ** * *
8889 AAAGGTTGCCACCAACTTATGTAG-ACTTCGAAAAAATTACCACCAACTCGTATAGG-TTATTGA
1 AAAAGTTGCCACCAACTCGTGTGGCATTTTGAAAAGGTTGCCACCAACTCGTATGGGCTT-TTGA
* * *
8952 AAAGGTTGCCACCAAC-T-CATG-GACTTTAA
65 AAAGGTTGCCAACAACTTGTATGAG-CTTTCA
* * * * * * * * *
8981 AAAAGTTTCCACCAATTCGGGTAAGC-TTTTGAAAAGGTTGCCACCAACTTGTGTAGCCTTCTGA
1 AAAAGTTGCCACCAACTCGTGT-GGCATTTTGAAAAGGTTGCCACCAACTCGTATGGGCTTTTGA
* * * * *
9045 AAAGGTTACCACCAACTCATGT-GGA-CTATGA
65 AAAGGTTGCCAACAACT--TGTATGAGCTTTCA
** * * * * * * *
9076 CTATGTTGCC-CCAAACTTGTGT-GAACTTTGAAAAGGTTGCCACCAACTCGTGTGGACTTTTTA
1 AAAAGTTGCCACC-AACTCGTGTGGCATTTTGAAAAGGTTGCCACCAACTCGTATGGGCTTTTGA
* * **** * *
9139 AACGGTTGCCAACAAATCACGTGGGCTTTGA
65 AAAGGTTGCCAACAACTTGTATGAGCTTTCA
* * * * * * ** *
9170 AAAGGTTGCCACCAACTCGTGTGGGC-TTTTAAAAAGGTTACCACAAACTCATGTAAGCCTTTGA
1 AAAAGTTGCCACCAACTCGTGT-GGCATTTTGAAAAGGTTGCCACCAACTCGTATGGGCTTTTGA
* * * ** * ** *
9234 AATGGTTGCTACCAACACGTGTGAAATTTTA
65 AAAGGTTGCCAACAACTTGTATGAGCTTTCA
* * * * * * * *
9265 AAAAGGTTACCACCAACTCGTGCGGAATTTTGAAAAAGTTGTCACTAACTTGTGTGGGCTTTTGA
1 AAAA-GTTGCCACCAACTCGTGTGGCATTTTGAAAAGGTTGCCACCAACTCGTATGGGCTTTTGA
* *
9330 AAAGGTTACCACCAACTCTTGTA-GA-CTTTTCA
65 AAAGGTTGCCAACAA--CTTGTATGAGC-TTTCA
* * ** *
9362 AAAGGTTGCCACCAACTCGTGTGG-ATATTGAAATA-GTTGCTTCCAACTCGTTTGGGCTTTTGA
1 AAAAGTTGCCACCAACTCGTGTGGCATTTTGAAA-AGGTTGCCACCAACTCGTATGGGCTTTTGA
* **
9425 AAAGGTTGCCACCAACTTCTGTA-GA-CTTTTG
65 AAAGGTTGCCAACAAC-T-TGTATGAGCTTTCA
* * *** * * * * *
9456 AAAGGTTTCTGTCAACTCGTGTAG-ACTTTGAAATGGTTGCCAACAACTCGTGTGGGCTTTTGAA
1 AAAAGTTGCCACCAACTCGTGTGGCATTTTGAAAAGGTTGCCACCAACTCGTATGGGCTTTTGAA
* * *
9520 AAGGTTACCACCAACATATGTA-G-GCTTTTGA
66 AAGGTTGCCAACAAC-T-TGTATGAGC-TTTCA
* * * * * * * * * * *
9551 AAAGGTTACTACCAATTCATGTAG-ACTTTGACTATA-G-TGCCACAAACTCGTGTGAGC-TTTG
1 AAAAGTTGCCACCAACTCGTGTGGCATTTTGA--AAAGGTTGCCACCAACTCGTATGGGCTTTTG
* * * ** * *
9612 AAAAGGTTACCACCAACTCGCGTGGGCTTTTA
64 AAAAGGTTGCCAACAACTTGTATGAGCTTTCA
* * * * * * * *
9644 AAATGGTTACCACCAACTCGTGTGGGATTTTGTAAAA-GTTACCATCAACTCGTGTGAGCTTTTA
1 AAA-AGTTGCCACCAACTCGTGTGGCATTTTG-AAAAGGTTGCCACCAACTCGTATGGGCTTTTG
* * *
9708 AAAACGTTGCCAACAACTCGTGTA-G-GATTTGA
64 AAAAGGTTGCCAACAACT--TGTATGAGCTTTCA
* * * * * * *
9740 AAAGGTTGCCACCAACTCGTGT-GAACTTTTGAAAATGTTGCCAACAACTTGTGTGGAC-TTTGA
1 AAAAGTTGCCACCAACTCGTGTGGCA-TTTTGAAAAGGTTGCCACCAACTCGTATGGGCTTTTGA
** * * * *
9803 AAAGGTTGTTACCAACTTATGTGAGCTTTGGA
65 AAAGGTTGCCAACAACTTGTATGAGCTTT-CA
* * * * * * * * *
9835 AAATGTTGCTACCAACTCATATGGGATTTTGAAAAGGTTGTCACCAACTTGTGTGAGCTTTTGAA
1 AAAAGTTGCCACCAACTCGTGTGGCATTTTGAAAAGGTTGCCACCAACTCGTATGGGCTTTTGAA
* *
9900 AAGGTTGCCAACAA-TT-TATGTGGACTTTGA
66 AAGGTTGCCAACAACTTGTATG-AG-CTTTCA
* * *
9930 AAAGGTTGTCACCAACTCGTGTGGGC-TTTTGAAAAGGTTGCCACCAACTCTCGTA--GACTTTT
1 AAAAGTTGCCACCAACTCGTGT-GGCATTTTGAAAAGGTTGCCACCAA--CTCGTATGGGCTTTT
* ** * * *** * * *
9992 GAAAATGTTATCACCAACTCGTGCAAACTATGA
63 GAAAAGGTTGCCAACAACTTGTATGAGCTTTCA
** ** * * *
10025 AATGGTTGCCTGCAACTTC-TGTGGGCTTTTGGACTTTTGAAAAGGTTGCCACCATCTCATGTGG
1 AAAAGTTGCCACCAAC-TCGTGT-GGC------A-TTTTGAAAAGGTTGCCACCAACTCGTATGG
* * * ** *
10089 AC-TTTGAAAAGGTTGACAGCAACTCATATG-GTCTTTAAA
57 GCTTTTGAAAAGGTTGCCAACAACTTGTATGAG-CTTT-CA
* * * * * * * ** *
10128 AAAAGCTGCGACCAATTCGTTTTTGCA-TTTGTAAAGGTTGCTACCAACTTATGTGGGCTTTTGA
1 AAAAGTTGCCACCAACTCG-TGTGGCATTTTGAAAAGGTTGCCACCAACTCGTATGGGCTTTTGA
* * * *
10192 AAATGTTGCCACCAACTCGTGTG-GACTTT--
65 AAAGGTTGCCAACAACTTGTATGAG-CTTTCA
* ** * **** * **
10221 -GACTTTGGCCACCAACTCGTGTGG-ACTTTGACTTTGTTGCCACCAACTCGTGTGTAC-TTTGA
1 AAAAGTT-GCCACCAACTCGTGTGGCATTTTGAAAAGGTTGCCACCAACTCGTATGGGCTTTTGA
* * *
10283 CTATGG-TGCC-ACTAACTTGTAT-AGACTTTAA
65 -AAAGGTTGCCAAC-AACTTGTATGAG-CTTTCA
* * * ** * * *
10314 AAAAGTTTCCAGCAACTCGTGTCAGC-TTTTGAAAATATT-ACACCCAACTCGTGTGGAC-TTTG
1 AAAAGTTGCCACCAACTCGTGT-GGCATTTTGAAAAGGTTGCCA-CCAACTCGTATGGGCTTTTG
* * * * * **
10376 ACTATGG-TGCCATA-AACTTGTGTAAACTTTGT
64 A-AAAGGTTGCCA-ACAACTTGTATGAGCTTTCA
* * ** * *
10408 AAAGGTTGCCACCAACTCCTGTGGGC-TTTTGAAAAGGTTGCCAAAAACTTGTTTGGGC-TTTGA
1 AAAAGTTGCCACCAACTCGTGT-GGCATTTTGAAAAGGTTGCCACCAACTCGTATGGGCTTTTGA
** * * * ** **
10471 AAATCTTGCCACCAATTCATGT-GGATTTTTGT
65 AAAGGTTGCCAACAA--CTTGTATGAGCTTTCA
* * * * * * * *
10503 AAAGGGTGCCAACAACTCGTGTGTGC-TTTTGAAAAGGTTACCACCAACTCGTGTCGGCCTTGGA
1 AAAAGTTGCCACCAACTCGTGTG-GCATTTTGAAAAGGTTGCCACCAACTCGTATGGGCTTTTGA
** * * * * * *
10567 AAAGGTTGTTACCAACTCGTGTGGGATTTTGA
65 AAAGGTTGCCAACAACTTGTATGAG-CTTTCA
* ** * * * * * *
10599 AATAG-TGTTACCAACTTGAGTGGGACTTT-AAAAGGGTTGCCACTAACTCGTTTGGGCTTTTGA
1 AAAAGTTGCCACCAACTCGTGTGGCATTTTGAAAA-GGTTGCCACCAACTCGTATGGGCTTTTGA
* * *
10662 AAAGGTTGCCAACAACTTGTGTG-GATTTTGA
65 AAAGGTTGCCAACAACTTGTATGAG-CTTTCA
* ** * * * * * * * *
10693 AAAGGTTGTTACCAACCCGTCTGGGCA-TTTGAAAAAGTTTCCAACAACTTGTGTGGAC-TTTGA
1 AAAAGTTGCCACCAACTCGTGT-GGCATTTTGAAAAGGTTGCCACCAACTCGTATGGGCTTTTGA
* * * * **
10756 AAAGGTTGTCACCAACACTGTAT--GTTTTTT
65 AAAGGTTGCCAACAAC-TTGTATGAGCTTTCA
* *
10786 AAAAGATTGCCACCAACTCATGT-GCGATTTTGAAAAGGTTGCCACCAACTCGTGTGGGCTTTTG
1 AAAAG-TTGCCACCAACTCGTGTGGC-ATTTTGAAAAGGTTGCCACCAACTCGTATGGGCTTTTG
*
10850 AAAATGTTGCCAACAACTTATGT-TGA-C-TTCGA
64 AAAAGGTTGCCAACAAC-T-TGTATGAGCTTTC-A
* *** * * * * *
10882 AAAGGTTATTACTAACTCGCGTAG-ACTTTTGAAAAGGTTGCCACCAACTC-T-CGCAGAC-TTT
1 AAAAGTTGCCACCAACTCGTGTGGCA-TTTTGAAAAGGTTGCCACCAACTCGTATG--GGCTTTT
* * *
10943 GAAAAGGTTACCACCAA-TTCGTATGGATTTTTGGGCTTTTGA
63 GAAAAGGTTGCCAACAACTT-GTAT-GA-------GC-TTTCA
* * * * * * *
10985 AAAGGTTGCCACCAACAT-GTGTGG-ACTTTGAAAATGTTGCAATCAA-TGCGTGTGGGCTTTAG
1 AAAAGTTGCCACCAAC-TCGTGTGGCATTTTGAAAAGGTTGCCACCAACT-CGTATGGGCTTTTG
* * * * * ** * *
11047 ATAAGGCTGCTACCAACTCGCGTGGGCTTTTGA
64 AAAAGGTTGCCAACAACTTGTATGAGC-TTTCA
** * * * * * * * *
11080 AATGGTTCCCATCAACTCATGTGGGCA-TTTGAAAATGTTACCACGAACTCGTGTGGAC-TTTGA
1 AAAAGTTGCCACCAACTCGTGT-GGCATTTTGAAAAGGTTGCCACCAACTCGTATGGGCTTTTGA
* * * * *
11143 CTATGG-TGCCACCAACTTTTAT-AGACTTTGA
65 -AAAGGTTGCCAACAACTTGTATGAG-CTTTCA
* ** * * * * **
11174 AAAGGTTGCCACCAACTAATGTGAGC-TTCTGAAAATGTTAGACTTTGACTATGGT-GCTAAAAC
1 AAAAGTTGCCACCAACTCGTGTG-GCATTTTGAAAAGGTT-G-C---CACCA-ACTCG-T---A-
** * * ** * * *
11237 TCGTGTGAACTTTGAAAAGGTTACCACCAACTCATGTGGGCTTTTA
54 T-G-G-G-CTTTTGAAAAGGTTGCCAACAACTTGTATGAGCTTTCA
** * ** * * *
11283 AAATAGTTGCCACCAACTTATGTAG-ATTTTTGAAAATATTACCACCAACTCGTGTGGGCCTTTG
1 AAA-AGTTGCCACCAACTCGTGTGGCA-TTTTGAAAAGGTTGCCACCAACTCGTATGGGCTTTTG
* * *
11347 AAAAGGTTGCTAGCAACTCATGT-TG-GCTTTTA
64 AAAAGGTTGCCAACAACT--TGTATGAGCTTTCA
* * ** * ** * * ** *
11379 AAAATGTTGCCACTAACTCATGT-ATATTTTTAAAAATATTACCACCAACTCGTGTAAGCCTTTG
1 AAAA-GTTGCCACCAACTCGTGTGGCA-TTTTGAAAAGGTTGCCACCAACTCGTATGGGCTTTTG
* * * * *
11443 AAAATGTTG-CTACTAACTCATGTAGGA-TTTTGA
64 AAAAGGTTGCCAAC-AACT--TGTATGAGCTTTCA
* * * * * * *
11476 AAAGGTTCCCACCAACTCGAGTGGGATTTTGAAAAGGTTACCACCAACTCGTGTGGGCTTGTGAA
1 AAAAGTTGCCACCAACTCGTGTGGCATTTTGAAAAGGTTGCCACCAACTCGTATGGGCTTTTGAA
* * *
11541 AAGGTTGCCAACAACTTGTGTG-GATTTTGA
66 AAGGTTGCCAACAACTTGTATGAG-CTTTCA
* ** * * * ** * ** *
11571 AAAGGTTATCACTAACTCGGGTGGGC--TTTGAAAAGGTTGGCACCAACTATTATAGAATTTTAA
1 AAAAGTTGCCACCAACTCGTGT-GGCATTTTGAAAAGGTTGCCACCAACTCGTATGGGCTTTTGA
* * * *
11634 AAAGGTTACC-ACTAACTCGTGTG-GACTTTGA
65 AAAGGTTGCCAAC-AACTTGTATGAG-CTTTCA
** * * * * *
11665 AATGGTTACCACCAATTCGTGTGGGCTTTTAGGCTTTTGAAAAGGTTGCCACCAACTCTTGTGGA
1 AAAAGTTGCCACCAACTCGTGT-GGC----A---TTTTGAAAAGGTTGCCACCAACTCGTATGGG
* * *
11730 CTTTTG-AAAGGTTGCCATCAA-TTCCTATG-GACTTTGA
58 CTTTTGAAAAGGTTGCCAACAACTT-GTATGAG-CTTTCA
* * * * * *
11767 AATAGTTGCCACCAACTCGTGTAG-AGTTTTGAAAAAGTTGCTACCAACTCGTGTGGGTTTTTGA
1 AAAAGTTGCCACCAACTCGTGTGGCA-TTTTGAAAAGGTTGCCACCAACTCGTATGGGCTTTTGA
* *
11831 AAAGGTTGCC-ACTAACTTGTGTG-GACTTTTTA
65 AAAGGTTGCCAAC-AACTTGTATGAG-C-TTTCA
** * * * *
11863 AATGGTTGCCAACAACTCACGTG-GGC--TTTGAAAAGGTTG-CACCAACTCGTGT-CG-ATTTG
1 AAAAGTTGCCACCAACT--CGTGTGGCATTTTGAAAAGGTTGCCACCAACTCGTATGGGCTTTTG
* * *
11922 AAAAGGTT-ACGACAAACTCATGTA-G-GCCTTTGA
64 AAAAGGTTGCCAAC-AACT--TGTATGAG-CTTTCA
* * * * * * * ** *
11955 AAAGGTTGCTACCAACACGTGCGGGATTTTGAAAAGGTTACCACTAACTCGTGCGGGATTTTGAA
1 AAAAGTTGCCACCAACTCGTGTGGCATTTTGAAAAGGTTGCCACCAACTCGTATGGGCTTTTGAA
* *** * ** *
12020 AAAGTTATTACCAAC-TCAAGTGGGCTTTCGA
66 AAGGTTGCCAACAACTTGTA-TGAGCTTTC-A
* * * ** * *** * **
12051 AAAA-TTGCTAACAACTTGTGCAG-ACTTTGAAAAGGTTATTACCAACTCGTGTAAGCTTTTGAA
1 AAAAGTTGCCACCAACTCGTGTGGCATTTTGAAAAGGTTGCCACCAACTCGTATGGGCTTTTGAA
* *
12114 AAGGTTACCACCAACTCTTGTA-GA-CTTTTCA
66 AAGGTTGCCAACAA--CTTGTATGAGC-TTTCA
* * * ** * *
12145 AAATA-TTACCACCAACTCGTATGGACA--TT-AAAATAGTTGCTTCCAACTCTTGTGGGCTTTT
1 AAA-AGTTGCCACCAACTCGTGTGG-CATTTTGAAAA-GGTTGCCACCAACTCGTATGGGC---T
*
12206 AAGCATTTGAAAAGGTTGCC-ACAACTCT-TAT-AGACTTTTGA
60 -----TTTGAAAAGGTTGCCAACAACT-TGTATGAG-C-TTTCA
* * * * * * *
12247 AAATA-TTGCCAACAACTTGTGTGG-ACTTTGAAAAGGTTGTCACCAACTCGTGTGAGCTTTTGG
1 AAA-AGTTGCCACCAACTCGTGTGGCATTTTGAAAAGGTTGCCACCAACTCGTATGGGCTTTTGA
* * * * *
12310 AAAGGTTGCTACCAACTCATGTAGGA-TTTTGA
65 AAAGGTTGCCAACAACT--TGTATGAGCTTTCA
* * * * * * * *
12342 AAAGGTTGCCACCAACTTGTGTGAGC-TTTTGAAAAGGTTGCTACCAACTCATGTAGGATTTCGA
1 AAAAGTTGCCACCAACTCGTGTG-GCATTTTGAAAAGGTTGCCACCAACTCGTATGGGCTTTTGA
*
12406 AAAGGTTGCCACCAACT
65 AAAGGTTGCCAACAACT
12423 CATGTGAGCT
Statistics
Matches: 5481, Mismatches: 1409, Indels: 1010
0.69 0.18 0.13
Matches are distributed among these distances:
79 13 0.00
80 57 0.01
81 34 0.01
82 7 0.00
83 6 0.00
84 1 0.00
85 1 0.00
86 1 0.00
87 25 0.00
88 41 0.01
89 7 0.00
90 10 0.00
91 31 0.01
92 188 0.03
93 527 0.10
94 1461 0.27
95 1528 0.28
96 801 0.15
97 128 0.02
98 49 0.01
99 10 0.00
100 15 0.00
101 24 0.00
102 238 0.04
103 171 0.03
104 42 0.01
105 5 0.00
106 1 0.00
108 4 0.00
109 26 0.00
110 29 0.01
ACGTcount: A:0.28, C:0.20, G:0.22, T:0.31
Consensus pattern (95 bp):
AAAAGTTGCCACCAACTCGTGTGGCATTTTGAAAAGGTTGCCACCAACTCGTATGGGCTTTTGAA
AAGGTTGCCAACAACTTGTATGAGCTTTCA
Found at i:5477 original size:125 final size:118
Alignment explanation
Indices: 5337--5638 Score: 300
Period size: 118 Copynumber: 2.5 Consensus size: 118
5327 CAAACTCCTT
* * ** *
5337 TGGACATTGACTATGGTGCCACCAACTGGTATAGACATTGGAAAGCTTGCCACCAACTCGTGTAG
1 TGGACTTTGACTATGGTGCCACCAACTCGTATAGACATTAAAAAGATTGCCACCAACTC-TGTAG
* *
5402 ACTTTGAAAAGGTTTTTACCAAT-TCGTGCGGGCTTTTGAAAAAGCTGCCACTAACTCGTG
65 ACTTTGAAAAGG---TTACCAATAAC-T-CGGG-TTTTGAAAAAGCTGCCACCAACT-GTG
* * * * * *
5462 TGGACTTTGACTATGGAGCCAGCAACACGTATGGACTTTAAAAAGATTGCCACCAACTCTGTGGA
1 TGGACTTTGACTATGGTGCCACCAACTCGTATAGACATTAAAAAGATTGCCACCAACTCTGTAGA
* * * *
5527 CTTTGAAAAGGTTACCACTAACTTGTGTTTTGAAAAAGTTGCCACCAACTGTG
66 CTTTGAAAAGGTTACCAATAACTCGGGTTTTGAAAAAGCTGCCACCAACTGTG
* * * * * * * *
5580 TGGACTTTGACAATAGTGCCACCAACTCATGTGGACTTTAAAAAGGTTGCCACTAACTC
1 TGGACTTTGACTATGGTGCCACCAACTCGTATAGACATTAAAAAGATTGCCACCAACTC
5639 GTAAGTTGCC
Statistics
Matches: 150, Mismatches: 26, Indels: 9
0.81 0.14 0.05
Matches are distributed among these distances:
118 53 0.35
119 21 0.14
120 2 0.01
121 8 0.05
122 1 0.01
124 16 0.11
125 49 0.33
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.28
Consensus pattern (118 bp):
TGGACTTTGACTATGGTGCCACCAACTCGTATAGACATTAAAAAGATTGCCACCAACTCTGTAGA
CTTTGAAAAGGTTACCAATAACTCGGGTTTTGAAAAAGCTGCCACCAACTGTG
Found at i:5529 original size:30 final size:30
Alignment explanation
Indices: 5493--5638 Score: 138
Period size: 30 Copynumber: 4.9 Consensus size: 30
5483 GCAACACGTA
5493 TGGACTTTAAAAAGATTGCCACCAACTCTG
1 TGGACTTTAAAAAGATTGCCACCAACTCTG
* * * *
5523 TGGACTTTGAAAAGGTTACCACTAACT-TG
1 TGGACTTTAAAAAGATTGCCACCAACTCTG
* *
5552 T-G-TTTTGAAAAAG-TTGCCACCAACTGTG
1 TGGACTTT-AAAAAGATTGCCACCAACTCTG
* * * *
5580 TGGACTTTGACAATAGTGCCACCAACTCATG
1 TGGACTTTAAAAAGATTGCCACCAACTC-TG
* *
5611 TGGACTTTAAAAAGGTTGCCACTAACTC
1 TGGACTTTAAAAAGATTGCCACCAACTC
5639 GTAAGTTGCC
Statistics
Matches: 90, Mismatches: 20, Indels: 11
0.74 0.17 0.09
Matches are distributed among these distances:
27 13 0.14
28 9 0.10
29 7 0.08
30 37 0.41
31 24 0.27
ACGTcount: A:0.31, C:0.21, G:0.19, T:0.29
Consensus pattern (30 bp):
TGGACTTTAAAAAGATTGCCACCAACTCTG
Found at i:5558 original size:27 final size:28
Alignment explanation
Indices: 5501--5581 Score: 74
Period size: 27 Copynumber: 2.8 Consensus size: 28
5491 TATGGACTTT
* * *
5501 AAAAAGATTGCCACCAACTCTGTGGACTTTG
1 AAAAAG-TTACCACCAACTGTGT-G-TTTTG
* *
5532 AAAAGGTTACCACTAACT-TGTGTTTTG
1 AAAAAGTTACCACCAACTGTGTGTTTTG
*
5559 AAAAAGTTGCCACCAACTGTGTG
1 AAAAAGTTACCACCAACTGTGTG
5582 GACTTTGACA
Statistics
Matches: 42, Mismatches: 7, Indels: 5
0.78 0.13 0.09
Matches are distributed among these distances:
27 19 0.45
28 5 0.12
29 3 0.07
30 10 0.24
31 5 0.12
ACGTcount: A:0.32, C:0.20, G:0.20, T:0.28
Consensus pattern (28 bp):
AAAAAGTTACCACCAACTGTGTGTTTTG
Found at i:5830 original size:32 final size:32
Alignment explanation
Indices: 5643--6289 Score: 500
Period size: 32 Copynumber: 20.6 Consensus size: 32
5633 TAACTCGTAA
* *
5643 GTTGCCACCAATTCGTGT-GGATTTTGAAAAG
1 GTTGCCACCAACTCGTGTGGGCTTTTGAAAAG
* * * *
5674 TTTGCCACCAACTTGTGTGGGCTTTTTAAAAT
1 GTTGCCACCAACTCGTGTGGGCTTTTGAAAAG
* * * *
5706 ATTG-TACCAACTCGTGTAGAC-TTTGAAAAG
1 GTTGCCACCAACTCGTGTGGGCTTTTGAAAAG
* * * *
5736 GTTACCACCAACACGT-TAGGCTTTTGAAACG
1 GTTGCCACCAACTCGTGTGGGCTTTTGAAAAG
* ***
5767 GTTGCCACCAAATTAAGTGGGC-TTTGAAAAG
1 GTTGCCACCAACTCGTGTGGGCTTTTGAAAAG
* *
5798 GTTACCACCAATTCGTGTGGGCTTTTGAAAAG
1 GTTGCCACCAACTCGTGTGGGCTTTTGAAAAG
* * * * * *
5830 GTTGCCGCCAATTCCTATAGGCTTTTAAAAAG
1 GTTGCCACCAACTCGTGTGGGCTTTTGAAAAG
** * * *
5862 GTTGCCAATATCTCGTTTAGG-TTTTGAAAAG
1 GTTGCCACCAACTCGTGTGGGCTTTTGAAAAG
* * * *
5893 GTTACGACCAACTCGTATGGACTTTT-ACAGAA-
1 GTTGCCACCAACTCGTGTGGGCTTTTGA-A-AAG
5925 GTTGCCACCAACTCGTGTGGGCTTTTGAAAAG
1 GTTGCCACCAACTCGTGTGGGCTTTTGAAAAG
* *
5957 GTTGCTACCAACTCGTGTGGGATTTTGAAAAG
1 GTTGCCACCAACTCGTGTGGGCTTTTGAAAAG
* *
5989 GTTGCCACCAACTCATGTGGGATTTTGAAAAG
1 GTTGCCACCAACTCGTGTGGGCTTTTGAAAAG
* * *
6021 ATTGCCACCAACTCGTATGAGCTTTTGAAAAG
1 GTTGCCACCAACTCGTGTGGGCTTTTGAAAAG
* * * * *
6053 GTTGCCAACAACTTGTGTGGAC-TCTAAAAAG
1 GTTGCCACCAACTCGTGTGGGCTTTTGAAAAG
* *
6084 GTTGTCACCAACTCGTGTGGGATTTTGAAAAG
1 GTTGCCACCAACTCGTGTGGGCTTTTGAAAAG
* * *
6116 GTTGCCATCAACTCGTATGGGC-TTTGAGAAG
1 GTTGCCACCAACTCGTGTGGGCTTTTGAAAAG
* * * * * *
6147 GTTACCACTAACTCGTGTGGAC-TTCGACTATG
1 GTTGCCACCAACTCGTGTGGGCTTTTGA-AAAG
* * *
6179 G-TGCCGCCAACTTGTGTGGAC-TTTGAAAAG
1 GTTGCCACCAACTCGTGTGGGCTTTTGAAAAG
* * * *
6209 ATTGCCAACAACTTACGTGT--AC-TTTGAAAAA
1 GTTGCCACCAAC-T-CGTGTGGGCTTTTGAAAAG
* * * * *
6240 TTTACCACAAACTCATGTGGGCTTTT-AATAG
1 GTTGCCACCAACTCGTGTGGGCTTTTGAAAAG
6271 GTTGCCACCAACTCGTGTG
1 GTTGCCACCAACTCGTGTG
6290 AACTTTAACT
Statistics
Matches: 479, Mismatches: 119, Indels: 36
0.76 0.19 0.06
Matches are distributed among these distances:
29 4 0.01
30 16 0.03
31 223 0.47
32 229 0.48
33 7 0.01
ACGTcount: A:0.27, C:0.20, G:0.23, T:0.30
Consensus pattern (32 bp):
GTTGCCACCAACTCGTGTGGGCTTTTGAAAAG
Found at i:6148 original size:63 final size:64
Alignment explanation
Indices: 5643--6289 Score: 493
Period size: 63 Copynumber: 10.3 Consensus size: 64
5633 TAACTCGTAA
* * * * *
5643 GTTGCCACCAATTCGTGT-GGATTTTGAAAAGTTTGCCACCAACTTGTGTGGGCTTTTTAAAAT
1 GTTGCCACCAACTCGTGTGGGATTTTGAAAAGGTTGCCACCAACTCGTGTGGGCTTTTGAAAAG
* * * * * * * *
5706 ATTG-TACCAACTCGTGT-AGACTTTGAAAAGGTTACCACCAACACGT-TAGGCTTTTGAAACG
1 GTTGCCACCAACTCGTGTGGGATTTTGAAAAGGTTGCCACCAACTCGTGTGGGCTTTTGAAAAG
* *** * * *
5767 GTTGCCACCAAATTAAGTGGG-CTTTGAAAAGGTTACCACCAATTCGTGTGGGCTTTTGAAAAG
1 GTTGCCACCAACTCGTGTGGGATTTTGAAAAGGTTGCCACCAACTCGTGTGGGCTTTTGAAAAG
* * * * * * * ** * * *
5830 GTTGCCGCCAATTCCTATAGGCTTTTAAAAAGGTTGCCAATATCTCGTTTAGG-TTTTGAAAAG
1 GTTGCCACCAACTCGTGTGGGATTTTGAAAAGGTTGCCACCAACTCGTGTGGGCTTTTGAAAAG
* * *
5893 GTTACGACCAACTCGTAT-GGACTTTT-ACAGAA-GTTGCCACCAACTCGTGTGGGCTTTTGAAA
1 GTTGCCACCAACTCGTGTGGGA-TTTTGA-A-AAGGTTGCCACCAACTCGTGTGGGCTTTTGAAA
5955 AG
63 AG
* * *
5957 GTTGCTACCAACTCGTGTGGGATTTTGAAAAGGTTGCCACCAACTCATGTGGGATTTTGAAAAG
1 GTTGCCACCAACTCGTGTGGGATTTTGAAAAGGTTGCCACCAACTCGTGTGGGCTTTTGAAAAG
* * * * * * * * *
6021 ATTGCCACCAACTCGTATGAGCTTTTGAAAAGGTTGCCAACAACTTGTGTGGAC-TCTAAAAAG
1 GTTGCCACCAACTCGTGTGGGATTTTGAAAAGGTTGCCACCAACTCGTGTGGGCTTTTGAAAAG
* * * *
6084 GTTGTCACCAACTCGTGTGGGATTTTGAAAAGGTTGCCATCAACTCGTATGGGC-TTTGAGAAG
1 GTTGCCACCAACTCGTGTGGGATTTTGAAAAGGTTGCCACCAACTCGTGTGGGCTTTTGAAAAG
* * * * * * * * *
6147 GTTACCACTAACTCGTGT-GGACTTCGACTATGG-TGCCGCCAACTTGTGTGGAC-TTTGAAAAG
1 GTTGCCACCAACTCGTGTGGGATTTTGA-AAAGGTTGCCACCAACTCGTGTGGGCTTTTGAAAAG
* * * ** * * * *
6209 ATTGCCAACAACTTACGTGT---ACTTTGAAAAATTTACCACAAACTCATGTGGGCTTTT-AATA
1 GTTGCCACCAAC-T-CGTGTGGGATTTTGAAAAGGTTGCCACCAACTCGTGTGGGCTTTTGAAAA
6270 G
64 G
6271 GTTGCCACCAACTCGTGTG
1 GTTGCCACCAACTCGTGTG
6290 AACTTTAACT
Statistics
Matches: 456, Mismatches: 111, Indels: 36
0.76 0.18 0.06
Matches are distributed among these distances:
60 5 0.01
61 16 0.04
62 141 0.31
63 157 0.34
64 133 0.29
65 4 0.01
ACGTcount: A:0.27, C:0.20, G:0.23, T:0.30
Consensus pattern (64 bp):
GTTGCCACCAACTCGTGTGGGATTTTGAAAAGGTTGCCACCAACTCGTGTGGGCTTTTGAAAAG
Found at i:6577 original size:31 final size:31
Alignment explanation
Indices: 6542--6648 Score: 110
Period size: 31 Copynumber: 3.5 Consensus size: 31
6532 TTGACTATGG
*
6542 TGCCACCAACTTGTATAGACTTTGGAAAA-CT
1 TGCCACCAACTCGTATAGACTTT-GAAAAGCT
* *
6573 TGCCACCAACTCGTGTAGACTTTGAAAAGGT
1 TGCCACCAACTCGTATAGACTTTGAAAAGCT
* * * *
6604 TACCACCAACTCG-CTAGGCTTTTGAAAAGGT
1 TGCCACCAACTCGTATAGAC-TTTGAAAAGCT
*
6635 TGCTACCAACTCGT
1 TGCCACCAACTCGT
6649 TTGGGCTTTT
Statistics
Matches: 65, Mismatches: 8, Indels: 5
0.83 0.10 0.06
Matches are distributed among these distances:
30 9 0.14
31 56 0.86
ACGTcount: A:0.29, C:0.25, G:0.19, T:0.27
Consensus pattern (31 bp):
TGCCACCAACTCGTATAGACTTTGAAAAGCT
Found at i:6686 original size:40 final size:40
Alignment explanation
Indices: 6621--6700 Score: 99
Period size: 40 Copynumber: 2.0 Consensus size: 40
6611 AACTCGCTAG
* * * *
6621 GCTTTTGAAAAGGTTGCTACCAACTCGTT-TGGGCTTTTGA
1 GCTTTTGAAAAGATTGCCAACAACTC-TTGTGGACTTTTGA
*
6661 GCTTTTGAAAAGATTGCCAATAACTCTTGTGGACTTTTGA
1 GCTTTTGAAAAGATTGCCAACAACTCTTGTGGACTTTTGA
6701 AAGACTGCCA
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
39 2 0.06
40 32 0.94
ACGTcount: A:0.24, C:0.16, G:0.23, T:0.38
Consensus pattern (40 bp):
GCTTTTGAAAAGATTGCCAACAACTCTTGTGGACTTTTGA
Found at i:6741 original size:31 final size:31
Alignment explanation
Indices: 6662--6763 Score: 100
Period size: 31 Copynumber: 3.3 Consensus size: 31
6652 GGCTTTTGAG
*
6662 CTTTTGAAAAGATTGCCAATAACTCTTGTGGA
1 CTTTTG-AAAGATTGCCAATAACTCATGTGGA
* *
6694 CTTTTGAAAGACTGCCATTAACTCATGTGGA
1 CTTTTGAAAGATTGCCAATAACTCATGTGGA
* * *
6725 C-TTTGAAATGGTTGCCACA-AATTCGTGTGGA
1 CTTTTGAAA-GATTGCCA-ATAACTCATGTGGA
*
6756 TTTTTGAA
1 CTTTTGAA
6764 TAGGTTACCA
Statistics
Matches: 58, Mismatches: 9, Indels: 6
0.79 0.12 0.08
Matches are distributed among these distances:
30 7 0.12
31 39 0.67
32 12 0.21
ACGTcount: A:0.28, C:0.16, G:0.21, T:0.35
Consensus pattern (31 bp):
CTTTTGAAAGATTGCCAATAACTCATGTGGA
Found at i:6783 original size:32 final size:32
Alignment explanation
Indices: 6662--11190 Score: 2497
Period size: 32 Copynumber: 142.8 Consensus size: 32
6652 GGCTTTTGAG
* ** *
6662 CTTTTGAAAAGATTGCCAATAACTCTTGTGGA
1 CTTTTGAAAAGGTTGCCACCAACTCGTGTGGA
** ** *
6694 CTTTTG-AAAGACTGCCATTAACTCATGTGGA
1 CTTTTGAAAAGGTTGCCACCAACTCGTGTGGA
* * *
6725 C-TTTGAAATGGTTGCCACAAATTCGTGTGGA
1 CTTTTGAAAAGGTTGCCACCAACTCGTGTGGA
* * * *
6756 TTTTTGAATAGGTTACCACCAACTCGTGTGGT
1 CTTTTGAAAAGGTTGCCACCAACTCGTGTGGA
* * * * * * *
6788 TTTTTGAAAAGTTTACTACCAACTCATTTGGT
1 CTTTTGAAAAGGTTGCCACCAACTCGTGTGGA
* * * ** ** *
6820 TTTTTGAAATGGTTACCATTAACTTATGTGGG
1 CTTTTGAAAAGGTTGCCACCAACTCGTGTGGA
* * * *
6852 CCTTCG-AAAGGTTGCTACCAACTTGTGTGGA
1 CTTTTGAAAAGGTTGCCACCAACTCGTGTGGA
* * * *
6883 -TTTTAAAAAGGTTACCACGAACTCGTGCGAGA
1 CTTTTGAAAAGGTTGCCACCAACTCGTGTG-GA
* * *
6915 -TTTTGAAAAGGTTGCCACC-ACACATGTGGG
1 CTTTTGAAAAGGTTGCCACCAACTCGTGTGGA
*
6945 CTTTTGAAAAGGTTGCCAACAACTTC-TGTGGA
1 CTTTTGAAAAGGTTGCCACCAAC-TCGTGTGGA
* * *
6977 C-TTTGAAAAAGTTGTCACCAACTCGTGTGGG
1 CTTTTGAAAAGGTTGCCACCAACTCGTGTGGA
* * ***
7008 CTTTTGAAGAGGTTGCCACCAACTCTTACAGA
1 CTTTTGAAAAGGTTGCCACCAACTCGTGTGGA
* * *
7040 CTTTTGAAAAGGTAT-CCACCTACATATGTGGGCTTTTGGG
1 CTTTTGAAAAGGT-TGCCACCAAC-T-CGT--G----TGGA
* * *
7080 CTTTTGAAAAGGTTGACACCAACTCTTATGGA
1 CTTTTGAAAAGGTTGCCACCAACTCGTGTGGA
* * ** *
7112 CTTTTG-AACGGTTGCTATTAACTCATGTGGA
1 CTTTTGAAAAGGTTGCCACCAACTCGTGTGGA
* * * *
7143 C-TTTGAAATGGTTACCACCAATTCATGTGGA
1 CTTTTGAAAAGGTTGCCACCAACTCGTGTGGA
*
7174 TTTTTGAAAAGGTTGCCACCAACTC-TGTGGA
1 CTTTTGAAAAGGTTGCCACCAACTCGTGTGGA
* * * *
7205 TTTTTGAAAAGGTTGCCACCAACTCCTATGGG
1 CTTTTGAAAAGGTTGCCACCAACTCGTGTGGA
* * * *
7237 CTTTTGAAAAGGTTGCCAACAACTCATTTGGG
1 CTTTTGAAAAGGTTGCCACCAACTCGTGTGGA
*
7269 C-TTTCAAAAGGTTGCCACCAACTCGTGTGGA
1 CTTTTGAAAAGGTTGCCACCAACTCGTGTGGA
* * * * *
7300 CATTTGTAAAGCTTACCACCAACTCGTGGGGGA
1 CTTTTGAAAAGGTTGCCACCAACTCGT-GTGGA
*
7333 -TTTTG-AAAGGTTGCCAGCAACTCGTGTGGGA
1 CTTTTGAAAAGGTTGCCACCAACTCGTGT-GGA
* * * *
7364 -TTTTGAAAATGTTGCTAGCAACTCGTGTGGG
1 CTTTTGAAAAGGTTGCCACCAACTCGTGTGGA
* * * * *
7395 TTTTTGAAAAGGTTGCCAACAGCTTGAGTGGA
1 CTTTTGAAAAGGTTGCCACCAACTCGTGTGGA
* *
7427 C-TTTGAAATGGTTGTCACCAACTCGTGTGAGA
1 CTTTTGAAAAGGTTGCCACCAACTCGTGTG-GA
* * *
7459 -TTTTGAAAAGTTTGCCACCAACGCATGTAGGA
1 CTTTTGAAAAGGTTGCCACCAACTCGTGT-GGA
** * * * *
7491 -TTTCAAAAATGTTACCACCAATTCGTGTGTGGG
1 CTTTTGAAAAGGTTGCCACCAACTC--GTGTGGA
* * *
7524 CTTTTGAAAAAGTTGCCAACAACTTGTGTGGA
1 CTTTTGAAAAGGTTGCCACCAACTCGTGTGGA
* ** * *
7556 C-TTCGAAAAGGTTGCCAATAACTCTTGTAGA
1 CTTTTGAAAAGGTTGCCACCAACTCGTGTGGA
* *
7587 CTTTTGAAAAAGTTGCCACCAACTCGTGTAGA
1 CTTTTGAAAAGGTTGCCACCAACTCGTGTGGA
*
7619 C-TTT-AAAATGGTTGTCACCAACTCGTGTGGGCA
1 CTTTTGAAAA-GGTTGCCACCAACTCGTGT-GG-A
* * *
7652 TTTGGGCTTTTGAAAAGGTTACCACCAACTCTTTTAGG-
1 ------CTTTTGAAAAGGTTGCCACCAACTCGTGT-GGA
*
7690 CTTTTG-AAAGGTTGCCATCAACTCGTGTGGA
1 CTTTTGAAAAGGTTGCCACCAACTCGTGTGGA
* *
7721 C-TTTGAAATGGTTGCCACCAACTAGTGTGGA
1 CTTTTGAAAAGGTTGCCACCAACTCGTGTGGA
* * * * *
7752 C-ATTGAAAGGGTTGCCACCAATTAGTTTGTG-
1 CTTTTGAAAAGGTTGCCACCAACTCGTGTG-GA
* * *
7783 CTTTTGAAAAGGTTGCCAGCAGCTCATGTGGA
1 CTTTTGAAAAGGTTGCCACCAACTCGTGTGGA
* * * *
7815 C-TTTGAAAAGTTTGCCACTAACTCATAG-GGG
1 CTTTTGAAAAGGTTGCCACCAACTCGT-GTGGA
* * ** *
7846 C-TTTGAAAAAGTTACC-TTAACTTGTGTGGA
1 CTTTTGAAAAGGTTGCCACCAACTCGTGTGGA
* * * * *
7876 -ATTTGAAAAGGTTGCTATCAACTTGTGTGGC
1 CTTTTGAAAAGGTTGCCACCAACTCGTGTGGA
* ** * *
7907 CTTTTAAAAAGGCAGCCAACAACTCGTGTGGG
1 CTTTTGAAAAGGTTGCCACCAACTCGTGTGGA
* *
7939 CTTTTG-AAAGATTGCCACCAACTCATGTGGA
1 CTTTTGAAAAGGTTGCCACCAACTCGTGTGGA
* *
7970 C-TTTGAAAAGGTTGCCACTAACTCGTATGTG-
1 CTTTTGAAAAGGTTGCCACCAACTCGTGTG-GA
* * *
8001 C-TTTGAAAAGGTTACCACCAACTCCTATGGA
1 CTTTTGAAAAGGTTGCCACCAACTCGTGTGGA
*
8032 C-TTTGAAAAGGTTGCCATCAACTCGTGTAGG-
1 CTTTTGAAAAGGTTGCCACCAACTCGTGT-GGA
* *** * *
8063 -TTTTTAAAAGGGCAACCACCAACTCGTATGGG
1 CTTTTGAAAA-GGTTGCCACCAACTCGTGTGGA
*
8095 CTTTTGAAAAGGTTGCCACCAACTCATGTAGG-
1 CTTTTGAAAAGGTTGCCACCAACTCGTGT-GGA
* *** *
8127 CTTTCGAAAATAATACCACCAA-TGCGTGTGGA
1 CTTTTGAAAAGGTTGCCACCAACT-CGTGTGGA
* * * *
8159 C-TTTGACTATAGG--GCCACCAACTTGTATAGA
1 CTTTTGA--AAAGGTTGCCACCAACTCGTGTGGA
** ** *
8190 C-TTTGAAAATATTGCCACCTGCTCGTAT-GA
1 CTTTTGAAAAGGTTGCCACCAACTCGTGTGGA
* *
8220 GCATTTGAAAAGGTTAG-CACCAACTCGTGTGAA
1 -CTTTTGAAAAGGTT-GCCACCAACTCGTGTGGA
* * *
8253 C-TTTGAAATGGTTGCCTCCAACTAGTGTGGA
1 CTTTTGAAAAGGTTGCCACCAACTCGTGTGGA
* **
8284 CTTTTGAAATGGTTGCCACCAACTCGTGTATA
1 CTTTTGAAAAGGTTGCCACCAACTCGTGTGGA
* * *
8316 C-TTTAAAAATGTTGCTACCAACTCGTGTTGG-
1 CTTTTGAAAAGGTTGCCACCAACTCGTG-TGGA
* * *
8347 C-TATAAAAAGGTTGCCACCAACTCGTGCGGA
1 CTTTTGAAAAGGTTGCCACCAACTCGTGTGGA
*
8378 -TTTTGAAAAGGTTGCCATCAACTCGTGTAGG-
1 CTTTTGAAAAGGTTGCCACCAACTCGTGT-GGA
* * *
8409 CTTTTAAAAAGGCTGCCATCAACTCGTGTAGG-
1 CTTTTGAAAAGGTTGCCACCAACTCGTGT-GGA
* * *
8441 CTTTTAAAAAGGCTGCCATCAACTCGTGTAGG-
1 CTTTTGAAAAGGTTGCCACCAACTCGTGT-GGA
* * * * *
8473 CTTTTAAAAAAGCTGCCATCAACTAGTGTGGA
1 CTTTTGAAAAGGTTGCCACCAACTCGTGTGGA
* ** *
8505 C-TTTGAAAAGGTTGCCCCCAACGAGTATGGA
1 CTTTTGAAAAGGTTGCCACCAACTCGTGTGGA
* * * *
8536 CTTTTGAAAAGATTACCACAAACTTGTGTGGA
1 CTTTTGAAAAGGTTGCCACCAACTCGTGTGGA
* * * *
8568 C-ATTGACAAGGTTGCCACTAACTCGTGCAGG-
1 CTTTTGAAAAGGTTGCCACCAACTCGTG-TGGA
*
8599 C-TTTGAAAA-GTTACCACCAACTCGTGTGTAGA
1 CTTTTGAAAAGGTTGCCACCAACTCGTGTG--GA
* * * *
8631 C-TTTGAAAAGGTTGCCATCAAGTCATGTGGG
1 CTTTTGAAAAGGTTGCCACCAACTCGTGTGGA
* * * *
8662 CATTTAAAAAGGCTGCCACCAACTCGTGTGGG
1 CTTTTGAAAAGGTTGCCACCAACTCGTGTGGA
* * * ** * *
8694 CTTTTAAAAAAGTTACCACCATTTCGTGCGGG
1 CTTTTGAAAAGGTTGCCACCAACTCGTGTGGA
* ** ** *
8726 CTTTTAAAAATTTTGCCTTCAACTTGTGTGGA
1 CTTTTGAAAAGGTTGCCACCAACTCGTGTGGA
* * * *
8758 C-TTTGAATATGG-TGCCACCAACTTGTATAGA
1 CTTTTGAA-AAGGTTGCCACCAACTCGTGTGGA
* ** *
8789 C-TTTGAAAAGGTTACCACCAACTTATGAAGG-
1 CTTTTGAAAAGGTTGCCACCAACTCGTG-TGGA
* * *
8820 CTTCTGGAAAGGTTGCCACCTACTCGTGTGGA
1 CTTTTGAAAAGGTTGCCACCAACTCGTGTGGA
* * * * *
8852 C-TTTGACTATAGG--GCAATCAACTTGTGTAGA
1 CTTTTGA--AAAGGTTGCCACCAACTCGTGTGGA
** *
8883 C-TTTGAAAAGGTTGCCACCAACTTATGTAGA
1 CTTTTGAAAAGGTTGCCACCAACTCGTGTGGA
* ** * *
8914 C-TTCGAAAAAATTACCACCAACTCGTATAGG-
1 CTTTTGAAAAGGTTGCCACCAACTCGTGT-GGA
*
8945 -TTATTGAAAAGGTTGCCACCAACTC--ATGGA
1 CTT-TTGAAAAGGTTGCCACCAACTCGTGTGGA
* * * * * *
8975 C-TTTAAAAAAGTTTCCACCAATTCGGGT-AA
1 CTTTTGAAAAGGTTGCCACCAACTCGTGTGGA
* * *
9005 GCTTTTGAAAAGGTTGCCACCAACTTGTGTAGC
1 -CTTTTGAAAAGGTTGCCACCAACTCGTGTGGA
* * *
9038 CTTCTGAAAAGGTTACCACCAACTCATGTGGA
1 CTTTTGAAAAGGTTGCCACCAACTCGTGTGGA
* ** * * *
9070 C-TATGACTATGTTGCC-CCAAACTTGTGTGAA
1 CTTTTGAAAAGGTTGCCACC-AACTCGTGTGGA
9101 C-TTTGAAAAGGTTGCCACCAACTCGTGTGGA
1 CTTTTGAAAAGGTTGCCACCAACTCGTGTGGA
* * * * ** *
9132 CTTTTTAAACGGTTGCCAACAAATCACGTGGG
1 CTTTTGAAAAGGTTGCCACCAACTCGTGTGGA
*
9164 C-TTTGAAAAGGTTGCCACCAACTCGTGTGGG
1 CTTTTGAAAAGGTTGCCACCAACTCGTGTGGA
* * * * *
9195 CTTTTAAAAAGGTTACCACAAACTCATGT-AA
1 CTTTTGAAAAGGTTGCCACCAACTCGTGTGGA
* * * * *
9226 GCCTTTGAAATGGTTGCTACCAACACGTGTGAA
1 -CTTTTGAAAAGGTTGCCACCAACTCGTGTGGA
* * * *
9259 ATTTTAAAAAGGTTACCACCAACTCGTGCGGA
1 CTTTTGAAAAGGTTGCCACCAACTCGTGTGGA
* * * * * *
9291 ATTTTGAAAAAGTTGTCACTAACTTGTGTGGG
1 CTTTTGAAAAGGTTGCCACCAACTCGTGTGGA
* * *
9323 CTTTTGAAAAGGTTACCACCAACTCTTGTAGA
1 CTTTTGAAAAGGTTGCCACCAACTCGTGTGGA
*
9355 CTTTTCAAAAGGTTGCCACCAACTCGTGTGGA
1 CTTTTGAAAAGGTTGCCACCAACTCGTGTGGA
* ** * *
9387 -TATTGAAATA-GTTGCTTCCAACTCGTTTGGG
1 CTTTTGAAA-AGGTTGCCACCAACTCGTGTGGA
*
9418 CTTTTGAAAAGGTTGCCACCAACTTC-TGTAGA
1 CTTTTGAAAAGGTTGCCACCAAC-TCGTGTGGA
* *** *
9450 CTTTTG-AAAGGTTTCTGTCAACTCGTGTAGA
1 CTTTTGAAAAGGTTGCCACCAACTCGTGTGGA
* * *
9481 C-TTTGAAATGGTTGCCAACAACTCGTGTGGG
1 CTTTTGAAAAGGTTGCCACCAACTCGTGTGGA
* *
9512 CTTTTGAAAAGGTTACCACCAACAT-ATGTAGG-
1 CTTTTGAAAAGGTTGCCACCAAC-TCGTGT-GGA
* * * * *
9544 CTTTTGAAAAGGTTACTACCAATTCATGTAGA
1 CTTTTGAAAAGGTTGCCACCAACTCGTGTGGA
* *
9576 C-TTTGACTATA-G-TGCCACAAACTCGTGT-GA
1 CTTTTGA--AAAGGTTGCCACCAACTCGTGTGGA
* * *
9606 GC-TTTGAAAAGGTTACCACCAACTCGCGTGGG
1 -CTTTTGAAAAGGTTGCCACCAACTCGTGTGGA
*
9638 CTTTT-AAAATGGTTACCACCAACTCGTGTGGGA
1 CTTTTGAAAA-GGTTGCCACCAACTCGTGT-GGA
* *
9671 -TTTTGTAAAA-GTTACCATCAACTCGTGT-GA
1 CTTTTG-AAAAGGTTGCCACCAACTCGTGTGGA
* * *
9701 GCTTTTAAAAACGTTGCCAACAACTCGTGTAGGA
1 -CTTTTGAAAAGGTTGCCACCAACTCGTGT-GGA
*
9735 --TTTGAAAAGGTTGCCACCAACTCGTGTGAA
1 CTTTTGAAAAGGTTGCCACCAACTCGTGTGGA
* * *
9765 CTTTTGAAAATGTTGCCAACAACTTGTGTGGA
1 CTTTTGAAAAGGTTGCCACCAACTCGTGTGGA
** **
9797 C-TTTGAAAAGGTTGTTACCAACTTATGT-GA
1 CTTTTGAAAAGGTTGCCACCAACTCGTGTGGA
* * * * *
9827 GCTTTGGAAAATGTTGCTACCAACTCATATGGGA
1 -CTTTTGAAAAGGTTGCCACCAACTCGTGT-GGA
* *
9861 -TTTTGAAAAGGTTGTCACCAACTTGTGT-GA
1 CTTTTGAAAAGGTTGCCACCAACTCGTGTGGA
* * **
9891 GCTTTTGAAAAGGTTGCCAACAATTTATGTGGA
1 -CTTTTGAAAAGGTTGCCACCAACTCGTGTGGA
* *
9924 C-TTTGAAAAGGTTGTCACCAACTCGTGTGGG
1 CTTTTGAAAAGGTTGCCACCAACTCGTGTGGA
*
9955 CTTTTGAAAAGGTTGCCACCAACTC-TCGTAGA
1 CTTTTGAAAAGGTTGCCACCAACTCGT-GTGGA
* ** ***
9987 CTTTTGAAAATGTTATCACCAACTCGTGCAAA
1 CTTTTGAAAAGGTTGCCACCAACTCGTGTGGA
* * **
10019 C-TATGAAATGGTTGCCTGCAACTTCTGTGGGCTTTTGGA
1 CTTTTGAAAAGGTTGCCACCAAC-TC-GT--G----TGGA
* *
10058 CTTTTGAAAAGGTTGCCACCATCTCATGTGGA
1 CTTTTGAAAAGGTTGCCACCAACTCGTGTGGA
* * * * *
10090 C-TTTGAAAAGGTTGACAGCAACTCATATGGT
1 CTTTTGAAAAGGTTGCCACCAACTCGTGTGGA
** * * * * * *
10121 CTTTAAAAAAAGCTGCGACCAATTCGTTTTTG-
1 CTTTTGAAAAGGTTGCCACCAACTCG-TGTGGA
* * * ** *
10153 CATTTGTAAAGGTTGCTACCAACTTATGTGGG
1 CTTTTGAAAAGGTTGCCACCAACTCGTGTGGA
*
10185 CTTTTGAAAATGTTGCCACCAACTCGTGTGGA
1 CTTTTGAAAAGGTTGCCACCAACTCGTGTGGA
**
10217 C-TTTG---ACTTTGGCCACCAACTCGTGTGGA
1 CTTTTGAAAAGGTT-GCCACCAACTCGTGTGGA
**** *
10246 C-TTTGACTTTGTTGCCACCAACTCGTGTGTA
1 CTTTTGAAAAGGTTGCCACCAACTCGTGTGGA
* * * * * *
10277 C-TTTGACTATGG-TGCCACTAACTTGTATAGA
1 CTTTTGA-AAAGGTTGCCACCAACTCGTGTGGA
* * * * *
10308 C-TTTAAAAAAGTTTCCAGCAACTCGTGT-CA
1 CTTTTGAAAAGGTTGCCACCAACTCGTGTGGA
** *
10338 GCTTTTGAAAATATT-ACACCCAACTCGTGTGGA
1 -CTTTTGAAAAGGTTGCCA-CCAACTCGTGTGGA
* * ** * **
10371 C-TTTGACTATGG-TGCCATAAACTTGTGTAAA
1 CTTTTGA-AAAGGTTGCCACCAACTCGTGTGGA
* * *
10402 C-TTTGTAAAGGTTGCCACCAACTCCTGTGGG
1 CTTTTGAAAAGGTTGCCACCAACTCGTGTGGA
** * * *
10433 CTTTTGAAAAGGTTGCCAAAAACTTGTTTGGG
1 CTTTTGAAAAGGTTGCCACCAACTCGTGTGGA
** * *
10465 C-TTTGAAAATCTTGCCACCAATTCATGTGGA
1 CTTTTGAAAAGGTTGCCACCAACTCGTGTGGA
* * * *
10496 TTTTTGTAAAGGGTGCCAACAACTCGTGTGTG-
1 CTTTTGAAAAGGTTGCCACCAACTCGTGTG-GA
*
10528 CTTTTGAAAAGGTTACCACCAACTCGTGTCGG-
1 CTTTTGAAAAGGTTGCCACCAACTCGTGT-GGA
* * **
10560 CCTTGGAAAAGGTTGTTACCAACTCGTGTGGGA
1 CTTTTGAAAAGGTTGCCACCAACTCGTGT-GGA
* *
10593 -TTTTGAAATAGTGTT---ACCAACTTGAGTGGGA
1 CTTTTGAAA-AG-GTTGCCACCAACTCGTGT-GGA
* * *
10624 C-TTT-AAAAGGGTTGCCACTAACTCGTTTGGG
1 CTTTTGAAAA-GGTTGCCACCAACTCGTGTGGA
* *
10655 CTTTTGAAAAGGTTGCCAACAACTTGTGTGGA
1 CTTTTGAAAAGGTTGCCACCAACTCGTGTGGA
** * * *
10687 -TTTTGAAAAGGTTGTTACCAACCCGTCTGGG
1 CTTTTGAAAAGGTTGCCACCAACTCGTGTGGA
* * * * *
10718 CATTTGAAAAAGTTTCCAACAACTTGTGTGGA
1 CTTTTGAAAAGGTTGCCACCAACTCGTGTGGA
* * *
10750 C-TTTGAAAAGGTTGTCACCAACAC-TGTATG-
1 CTTTTGAAAAGGTTGCCACCAACTCGTGT-GGA
* * * *
10780 TTTTTTAAAAGATTGCCACCAACTCATGTGCGA
1 CTTTTGAAAAGGTTGCCACCAACTCGTGTG-GA
*
10813 -TTTTGAAAAGGTTGCCACCAACTCGTGTGGG
1 CTTTTGAAAAGGTTGCCACCAACTCGTGTGGA
* * ** *
10844 CTTTTGAAAATGTTGCCAACAACTTATGTTGA
1 CTTTTGAAAAGGTTGCCACCAACTCGTGTGGA
* *** * * *
10876 C-TTCGAAAAGGTTATTACTAACTCGCGTAGA
1 CTTTTGAAAAGGTTGCCACCAACTCGTGTGGA
**
10907 CTTTTGAAAAGGTTGCCACCAACTC-TCGCAGA
1 CTTTTGAAAAGGTTGCCACCAACTCGT-GTGGA
* * *
10939 C-TTTGAAAAGGTTACCACCAATTCGTATGGATTTTTGGG
1 CTTTTGAAAAGGTTGCCACCAACTCG--T-G-----TGGA
10978 CTTTTGAAAAGGTTGCCACCAACAT-GTGTGGA
1 CTTTTGAAAAGGTTGCCACCAAC-TCGTGTGGA
* * * *
11010 C-TTTGAAAATGTTGCAATCAA-TGCGTGTGGG
1 CTTTTGAAAAGGTTGCCACCAACT-CGTGTGGA
* * * * * *
11041 CTTTAGATAAGGCTGCTACCAACTCGCGTGGG
1 CTTTTGAAAAGGTTGCCACCAACTCGTGTGGA
* * * * *
11073 CTTTTGAAATGGTTCCCATCAACTCATGTGGG
1 CTTTTGAAAAGGTTGCCACCAACTCGTGTGGA
* * * *
11105 CATTTGAAAATGTTACCACGAACTCGTGTGGA
1 CTTTTGAAAAGGTTGCCACCAACTCGTGTGGA
* * ** * *
11137 C-TTTGACTATGG-TGCCACCAACTTTTATAGA
1 CTTTTGA-AAAGGTTGCCACCAACTCGTGTGGA
11168 C-TTTGAAAAGGTTGCCACCAACT
1 CTTTTGAAAAGGTTGCCACCAACT
11191 AATGTGAGCT
Statistics
Matches: 3439, Mismatches: 840, Indels: 437
0.73 0.18 0.09
Matches are distributed among these distances:
28 3 0.00
29 58 0.02
30 111 0.03
31 1406 0.41
32 1658 0.48
33 73 0.02
34 34 0.01
35 1 0.00
36 1 0.00
37 1 0.00
38 3 0.00
39 9 0.00
40 76 0.02
41 5 0.00
ACGTcount: A:0.28, C:0.20, G:0.22, T:0.31
Consensus pattern (32 bp):
CTTTTGAAAAGGTTGCCACCAACTCGTGTGGA
Found at i:6925 original size:63 final size:61
Alignment explanation
Indices: 6858--9978 Score: 248
Period size: 63 Copynumber: 49.3 Consensus size: 61
6848 TGGGCCTTCG
* * *
6858 AAAGGTTGCTACCAACTTGTGTGGATTTTAAAAAGGTTACCACGAACTCGTGCGAGATTTTGA
1 AAAGGTTGCTACCAACTTGTGTGGCTTTTGAAAAGGTTGCCAC-AACTC-TGCGAGATTTTGA
* * * *
6921 AAAGGTTGCCACCACACATGTG-GGCTTTTGAAAAGGTTGCCAACAACTTCTGTG-GACTTTGA
1 AAAGGTTGCTACCA-ACTTGTGTGGCTTTTGAAAAGGTTGCC-ACAAC-TCTGCGAGATTTTGA
* * * *
6983 AAAAGTTG-TCACCAACTCGTGTGGGCTTTTGAAGAGGTTGCCACCAACTCTTAC-AGACTTTTG
1 AAAGGTTGCT-ACCAACTTGTGT-GGCTTTTGAAAAGGTTGCCA-CAACTC-TGCGAGA-TTTTG
7046 A
61 A
* * * **
7047 AAAGGTAT-CCACCTACATATGTGGGCTTTTGGGCTTTTGAAAAGGTTGACACCAACTCTTATG-
1 AAAGGT-TGCTACCAAC-T-TGT--G----T-GGCTTTTGAAAAGGTTGCCA-CAACTC-TGCGA
7110 GACTTTTG-
54 GA-TTTTGA
* ** ** * * * *
7118 AACGGTTGCTATTAACTCATGTGGAC-TTTGAAATGGTTACCACCAATTCATGTG-GATTTTTGA
1 AAAGGTTGCTACCAACTTGTGTGG-CTTTTGAAAAGGTTGCCA-CAACTC-TGCGAGA-TTTTGA
* ** ** * *
7181 AAAGGTTGCCACCAACTCTGTG-GATTTTTGAAAAGGTTGCCACCAACTCCTATGGGCTTTTGA
1 AAAGGTTGCTACCAACT-TGTGTGGCTTTTGAAAAGGTTGCCA-CAACT-CTGCGAGATTTTGA
* * * * * *
7244 AAAGGTTGCCAACAACTCATTTG-GGC-TTTCAAAAGGTTGCCACCAACTCGTGTG-GACATTTG
1 AAAGGTTGCTACCAACT--TGTGTGGCTTTTGAAAAGGTTGCCA-CAACTC-TGCGAGA-TTTTG
*
7306 T
61 A
* * * * * * * *
7307 AAAGCTTACCACCAACTCGTGGGGGATTTTG-AAAGGTTGCCAGCAACTCGTGTGGGATTTTGA
1 AAAGGTTGCTACCAACTTGT-GTGGCTTTTGAAAAGGTTGCCA-CAACTC-TGCGAGATTTTGA
* * * * * * * *
7370 AAATGTTGCTAGCAACTCGTGTGGGTTTTTGAAAAGGTTGCCAACAGCT-TGAGTGGACTTTGA
1 AAAGGTTGCTACCAACTTGTGT-GGCTTTTGAAAAGGTTGCC-ACAACTCTGCG-AGATTTTGA
* * * * * * **
7433 AATGGTTG-TCACCAACTCGTGTGAGATTTTGAAAAGTTTGCCACCAACGCATG-TAGGATTTCA
1 AAAGGTTGCT-ACCAACTTGTGTG-GCTTTTGAAAAGGTTGCCA-CAACTC-TGCGA-GATTTTG
7496 A
61 A
* * * * * * * * *
7497 AAATGTTACCACCAATTCGTGTGTGGGCTTTTGAAAAAGTTGCCAACAACT-TGTGTGGACTTCG
1 AAAGGTTGCTACCAA--CTTGTGT-GGCTTTTGAAAAGGTTGCC-ACAACTCTGCG-AGATTTTG
7561 A
61 A
* ** * * * *
7562 AAAGGTTGCCAATAACTCT-TGTAGACTTTTGAAAAAGTTGCCACCAACTCGTG-TAGACTTT-A
1 AAAGGTTGCTACCAACT-TGTGT-GGCTTTTGAAAAGGTTGCCA-CAACTC-TGCGAGATTTTGA
* ***
7624 AAATGGTTG-TCACCAACTCGTGTGGGCATTTGGGCTTTTGAAAAGGTTACCACCAACTCTTTTA
1 AAA-GGTTGCT-ACCAACT--TGT--G----T-GGCTTTTGAAAAGGTTGCCA-CAACTCTGCGA
*
7688 GGCTTTTG-
54 -GATTTTGA
* * * * * * **
7696 AAAGGTTGCCATCAACTCGTGTGGAC-TTTGAAATGGTTGCCACCAACTAGTGTG-GACATTGA
1 AAAGGTTGCTACCAACTTGTGTGG-CTTTTGAAAAGGTTGCCA-CAACT-CTGCGAGATTTTGA
* * * * * *
7758 AAGGGTTGCCACCAA-TTAGTTTGTGCTTTTGAAAAGGTTGCCAGCAGCTCATGTG-GACTTTGA
1 AAAGGTTGCTACCAACTT-GTGTG-GCTTTTGAAAAGGTTGCCA-CAACTC-TGCGAGATTTTGA
* * * ** * * * ** * * *
7821 AAAGTTTGCCACTAACTCATAGGGGC-TTTGAAAAAGTTACCTTAACT-TGTGTGGAATTTGA
1 AAAGGTTGCTACCAACTTGT-GTGGCTTTTGAAAAGGTTGCCACAACTCTGCG-AGATTTTGA
* * ** * * *
7882 AAAGGTTGCTATCAACTTGTGTGGCCTTTTAAAAAGGCAGCCAACAACTCGTGTGGGCTTTTG-
1 AAAGGTTGCTACCAACTTGTGTGG-CTTTTGAAAAGGTTGCC-ACAACTC-TGCGAGATTTTGA
* * ** ** * *
7945 AAAGATTGCCACCAACTCATGTGGAC-TTTGAAAAGGTTGCCACTAACTCGTATGTG-CTTTGA
1 AAAGGTTGCTACCAACTTGTGTGG-CTTTTGAAAAGGTTGCCAC-AACTC-TGCGAGATTTTGA
* * ** * * * *
8007 AAAGGTTACCACCAACTCCTATGGAC-TTTGAAAAGGTTGCCATCAACTCGTG-TAGGTTTTTA
1 AAAGGTTGCTACCAACTTGTGTGG-CTTTTGAAAAGGTTGCCA-CAACTC-TGCGAGATTTTGA
*** * * * * * *
8069 AAAGGGCAACCACCAACTCGTATGGGCTTTTGAAAAGGTTGCCACCAACTCATG-TAGGCTTTCG
1 AAA-GGTTGCTACCAACTTGTGT-GGCTTTTGAAAAGGTTGCCA-CAACTC-TGCGA-GATTTTG
8133 A
61 A
*** * * * * ** *
8134 AAATAATACCACCAA-TGCGTGTGGAC-TTTGACTATAGG--GCCACCAACT-TGTATAGACTTT
1 AAAGGTTGCTACCAACT-TGTGTGG-CTTTTGA--AAAGGTTGCCA-CAACTCTG-CGAGATTTT
8194 GA
60 GA
** * ** * * * * *
8196 AAATATTGCCACCTGCTCGTATGAGCATTTGAAAAGGTTAG-CACCAACTCGTGTGA-ACTTTGA
1 AAAGGTTGCTACCAACTTGTGTG-GCTTTTGAAAAGGTT-GCCA-CAACTC-TGCGAGATTTTGA
* * * * * * *
8259 AATGGTTGCCT-CCAACTAGTGTGGACTTTTGAAATGGTTGCCACCAACTCGTG-TATACTTTAA
1 AAAGGTTG-CTACCAACTTGTGTGG-CTTTTGAAAAGGTTGCCA-CAACTC-TGCGAGATTTTGA
* * * *
8322 AAATGTTGCTACCAACTCGTGTTGGC-TATAAAAAGGTTGCCACCAACTCGTGCG-GATTTTGA
1 AAAGGTTGCTACCAACTTGTG-TGGCTTTTGAAAAGGTTGCCA-CAACTC-TGCGAGATTTTGA
* * * * * * * *
8384 AAAGGTTGCCATCAACTCGTGTAGGCTTTTAAAAAGGCTGCCATCAACTCGTG-TAGGCTTTTAA
1 AAAGGTTGCTACCAACTTGTGT-GGCTTTTGAAAAGGTTGCCA-CAACTC-TGCGA-GATTTTGA
* * * * * * * * * *
8448 AAAGGCTGCCATCAACTCGTGTAGGCTTTTAAAAAAGCTGCCATCAACTAGTGTG-GACTTTGA
1 AAAGGTTGCTACCAACTTGTGT-GGCTTTTGAAAAGGTTGCCA-CAACT-CTGCGAGATTTTGA
** ** * * * * * **
8511 AAAGGTTGCCCCCAACGAGTATGGACTTTTGAAAAGATTACCACAAACT-TGTGTGGACATTGA
1 AAAGGTTGCTACCAACTTGTGTGG-CTTTTGAAAAGGTTGCCAC-AACTCTGCG-AGATTTTGA
* * * * * * * *
8574 CAAGGTTGCCACTAACTCGTGCAGGC-TTTGAAAA-GTTACCACCAACTCGTGTGTAGACTTTGA
1 AAAGGTTGCTACCAACTTGTG-TGGCTTTTGAAAAGGTTGCCA-CAACTC-TGCG-AGATTTTGA
* * * * * * * * * *
8637 AAAGGTTGCCATCAAGTCATGTG-GGCATTTAAAAAGGCTGCCACCAACTCGTGTGGGCTTTTAA
1 AAAGGTTGCTACCAA--CTTGTGTGGCTTTTGAAAAGGTTGCCA-CAACTC-TGCGAGATTTTGA
* * * * * * ** * * * *
8701 AAAAGTTACCACC-ATTTCGTGCGGGCTTTTAAAAATTTTGCCTTCAACT-TGTGTGGACTTTGA
1 AAAGGTTGCTACCAACTT-GTG-TGGCTTTTGAAAAGGTTGCC-ACAACTCTGCG-AGATTTTGA
* * * * * * * * *
8764 ATATGG-TGCCACCAACTTGTATAGAC-TTTGAAAAGGTTACCACCAACTTATG-AAGGCTTCTG
1 A-AAGGTTGCTACCAACTTGTGT-GGCTTTTGAAAAGGTTGCCA-CAAC-TCTGCGA-GATTTTG
*
8826 G
61 A
* * * * * * *
8827 AAAGGTTGCCACCTACTCGTGTGGAC-TTTGACTATAGG--GCAATCAACT-TGTGTAGACTTTG
1 AAAGGTTGCTACCAACTTGTGTGG-CTTTTGA--AAAGGTTGCCA-CAACTCTGCG-AGATTTTG
8888 A
61 A
* * * * ** * ** *
8889 AAAGGTTGCCACCAACTTATGTAGAC-TTCGAAAAAATTACCACCAACTC-GTATAGGTTATTGA
1 AAAGGTTGCTACCAACTTGTGT-GGCTTTTGAAAAGGTTGCCA-CAACTCTG-CGAGATT-TTGA
* ** * * * * * * *
8952 AAAGGTTGCCACCAACTCATG-GAC-TTTAAAAAAGTTTCCACCAATTC-GGGTAAGCTTTTGA
1 AAAGGTTGCTACCAACTTGTGTGGCTTTTGAAAAGGTTGCCA-CAACTCTGCG--AGATTTTGA
* * * * * * *
9013 AAAGGTTGCCACCAACTTGTGTAGCCTTCTGAAAAGGTTACCACCAACTCATGTG-GACTATGA
1 AAAGGTTGCTACCAACTTGTGT-GGCTTTTGAAAAGGTTGCCA-CAACTC-TGCGAGATTTTGA
** * * * * *
9076 CTATGTTGC-CCCAAACTTGTGTGAAC-TTTGAAAAGGTTGCCACCAACTCGTGTG-GACTTTTT
1 AAAGGTTGCTACC-AACTTGTGTG-GCTTTTGAAAAGGTTGCCA-CAACTC-TGCGAGA-TTTTG
9138 A
61 A
* * * ** * * * *
9139 AACGGTTGCCAACAAATCACGTG-GGC-TTTGAAAAGGTTGCCACCAACTCGTGTGGGCTTTTAA
1 AAAGGTTG-CTACCAA-CTTGTGTGGCTTTTGAAAAGGTTGCCA-CAACTC-TGCGAGATTTTGA
* * * ** * * * * * * * *
9202 AAAGGTTACCACAAACTCATGTAAGCCTTTGAAATGGTTGCTACCAACACGTGTGAAATTTTAA
1 AAAGGTTGCTACCAACTTGTGT-GGCTTTTGAAAAGGTTGCCA-CAACTC-TGCGAGATTTTGA
* * * * * * * * * * *
9266 AAAGGTTACCACCAACTCGTGCGGAATTTTGAAAAAGTTGTCACTAACTTGTGTGGGCTTTTGA
1 AAAGGTTGCTACCAACTTGTGTGG-CTTTTGAAAAGGTTGCCAC-AAC-TCTGCGAGATTTTGA
* * * * * *
9330 AAAGGTTACCACCAACTCT-TGTAGACTTTTCAAAAGGTTGCCACCAACTCGTGTG-GATATTGA
1 AAAGGTTGCTACCAACT-TGTGT-GGCTTTTGAAAAGGTTGCCA-CAACTC-TGCGAGATTTTGA
* * * *
9393 AATA-GTTGCTTCCAACTCGTTTGGGCTTTTGAAAAGGTTGCCACCAACTTCTG-TAGACTTTTG
1 AA-AGGTTGCTACCAACTTGTGT-GGCTTTTGAAAAGGTTGCCA-CAAC-TCTGCGAGA-TTTTG
9456 -
61 A
* ** * * * * * *
9456 AAAGGTTTCTGTCAACTCGTGTAGAC-TTTGAAATGGTTGCCAACAACTCGTGTGGGCTTTTGA
1 AAAGGTTGCTACCAACTTGTGT-GGCTTTTGAAAAGGTTGCC-ACAACTC-TGCGAGATTTTGA
* * * * * * * * *
9519 AAAGGTTACCACCAACATATGTAGGCTTTTGAAAAGGTTACTACCAATTCATG-TAGACTTTGA
1 AAAGGTTGCTACCAACTTGTGT-GGCTTTTGAAAAGGTTGCCA-CAACTC-TGCGAGATTTTGA
* * * * * * *
9582 CTATA-G-TGCCACAAACTCGTGTGAGC-TTTGAAAAGGTTACCACCAACTC-GCGTGGGCTTTT
1 --AAAGGTTGCTACCAACTTGTGTG-GCTTTTGAAAAGGTTGCCA-CAACTCTGC--GAGATTTT
9643 -A
60 GA
* * * * * * * *
9644 AAATGGTTACCACCAACTCGTGTGGGATTTTGTAAAA-GTTACCATCAACTCGTGTGAGCTTTTA
1 AAA-GGTTGCTACCAACTTGTGT-GGCTTTTG-AAAAGGTTGCCA-CAACTC-TGCGAGATTTTG
9708 A
61 A
* * * * * *
9709 AAACGTTGCCAACAACTCGTGTAGG-ATTTGAAAAGGTTGCCACCAACTCGTGTGA-ACTTTTGA
1 AAAGGTTGCTACCAACTTGTGT-GGCTTTTGAAAAGGTTGCCA-CAACTC-TGCGAGA-TTTTGA
* * * ** * * * *
9772 AAATGTTGCCAACAACTTGTGTGGAC-TTTGAAAAGGTTGTTACCAACTTATGTGAGCTTTGGA
1 AAAGGTTGCTACCAACTTGTGTGG-CTTTTGAAAAGGTTGCCA-CAAC-TCTGCGAGATTTTGA
* * * * * * *
9835 AAATGTTGCTACCAACTCATATG-GGATTTTGAAAAGGTTGTCACCAACTTGTGTGAGCTTTTGA
1 AAAGGTTGCTACCAACT--TGTGTGGCTTTTGAAAAGGTTGCCA-CAAC-TCTGCGAGATTTTGA
* * * * * * * *
9899 AAAGGTTGCCAACAATTTATGTGGAC-TTTGAAAAGGTTGTCACCAACTCGTGTGGGCTTTTGA
1 AAAGGTTGCTACCAACTTGTGTGG-CTTTTGAAAAGGTTGCCA-CAACTC-TGCGAGATTTTGA
*
9962 AAAGGTTGCCACCAACT
1 AAAGGTTGCTACCAACT
9979 CTCGTAGACT
Statistics
Matches: 2316, Mismatches: 522, Indels: 440
0.71 0.16 0.13
Matches are distributed among these distances:
59 4 0.00
60 8 0.00
61 118 0.05
62 459 0.20
63 1017 0.44
64 489 0.21
65 88 0.04
66 29 0.01
67 5 0.00
68 1 0.00
69 3 0.00
70 3 0.00
71 47 0.02
72 45 0.02
ACGTcount: A:0.28, C:0.20, G:0.22, T:0.30
Consensus pattern (61 bp):
AAAGGTTGCTACCAACTTGTGTGGCTTTTGAAAAGGTTGCCACAACTCTGCGAGATTTTGA
Found at i:6956 original size:94 final size:93
Alignment explanation
Indices: 6845--7028 Score: 226
Period size: 94 Copynumber: 2.0 Consensus size: 93
6835 CCATTAACTT
* * * * *
6845 ATGTGGGCCTTCGAAAGGTTGCTACCAACTTGTGTGGA-TTTTAAAAAGGTTACCACGAACTCGT
1 ATGTGGGCCTTCGAAAGGTTGCCAACAACTTCTGTGGACTTTGAAAAA-GTTACCACCAACTCGT
6909 GCGAGATTTTGAAAAGGTTGCCACCACAC
65 GCGAGATTTTGAAAAGGTTGCCACCACAC
* * **
6938 ATGTGGGCTTTTGAAAAGGTTGCCAACAACTTCTGTGGACTTTGAAAAAGTTGTCACCAACTCGT
1 ATGTGGGCCTTCG-AAAGGTTGCCAACAACTTCTGTGGACTTTGAAAAAGTTACCACCAACTCGT
* * * *
7003 GTGGGCTTTTGAAGAGGTTGCCACCA
65 GCGAGATTTTGAAAAGGTTGCCACCA
7029 ACTCTTACAG
Statistics
Matches: 76, Mismatches: 13, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
93 11 0.14
94 57 0.75
95 8 0.11
ACGTcount: A:0.27, C:0.20, G:0.26, T:0.28
Consensus pattern (93 bp):
ATGTGGGCCTTCGAAAGGTTGCCAACAACTTCTGTGGACTTTGAAAAAGTTACCACCAACTCGTG
CGAGATTTTGAAAAGGTTGCCACCACAC
Found at i:7617 original size:129 final size:126
Alignment explanation
Indices: 7179--7655 Score: 383
Period size: 126 Copynumber: 3.8 Consensus size: 126
7169 GTGGATTTTT
* * * * * *
7179 GAAAAGGTTGCCACCAACTC-TGTG-GATTTTTGAAAAGGTTGCCACCAACTCCTATGGGCTTTT
1 GAAAAGGTTGCCAACAACTCGTGTGAGA-TTTTGAAAA-GTTGCCACCAACTCGTGTAGGATTTC
* * * * * * * * * * * *
7242 GAAAAGGTTGCCAACAACTCATTTGGGC-TTTCAAAAGGTTGCCACCAACTCGTGTGGACATTT
64 AAAAATGTTACCACCAACTCGTGTGGGCTTTTGAAAAAGTTGCCAACAACTTGAGTGGAC-TTC
* * * * * * * * * **
7305 GTAAAGCTTACCACCAACTCGTGGGGGATTTTGAAAGGTTGCCAGCAACTCGTGTGGGATTTTGA
1 GAAAAGGTTGCCAACAACTCGTGTGAGATTTTGAAAAGTTGCCACCAACTCGTGTAGGATTTCAA
* * * * * * *
7370 AAATGTTGCTAGCAACTCGTGTGGGTTTTTGAAAAGGTTGCCAACAGCTTGAGTGGACTTT
66 AAATGTTACCACCAACTCGTGTGGGCTTTTGAAAAAGTTGCCAACAACTTGAGTGGACTTC
* * * * *
7431 GAAATGGTTGTCACCAACTCGTGTGAGATTTTGAAAAGTTTGCCACCAACGCATGTAGGATTTCA
1 GAAAAGGTTGCCAACAACTCGTGTGAGATTTTGAAAAG-TTGCCACCAACTCGTGTAGGATTTCA
* *
7496 AAAATGTTACCACCAATTCGTGTGTGGGCTTTTGAAAAAGTTGCCAACAACTTGTGTGGACTTC
65 AAAATGTTACCACCAACTC--GTGTGGGCTTTTGAAAAAGTTGCCAACAACTTGAGTGGACTTC
* *
7560 GAAAAGGTTGCCAATAACTCTTGT-AGACTTTTGAAAAAGTTGCCACCAACTCGTGTA-GACTTT
1 GAAAAGGTTGCCAACAACTCGTGTGAGA-TTTTG-AAAAGTTGCCACCAACTCGTGTAGGA-TTT
** *
7623 --AAAATGGTTGTCACCAACTCGTGTGGGCATTTG
63 CAAAAAT-GTTACCACCAACTCGTGTGGGCTTTTG
7656 GGCTTTTGAA
Statistics
Matches: 287, Mismatches: 54, Indels: 20
0.80 0.15 0.06
Matches are distributed among these distances:
126 106 0.37
127 77 0.27
128 18 0.06
129 81 0.28
130 5 0.02
ACGTcount: A:0.27, C:0.19, G:0.24, T:0.30
Consensus pattern (126 bp):
GAAAAGGTTGCCAACAACTCGTGTGAGATTTTGAAAAGTTGCCACCAACTCGTGTAGGATTTCAA
AAATGTTACCACCAACTCGTGTGGGCTTTTGAAAAAGTTGCCAACAACTTGAGTGGACTTC
Found at i:7703 original size:71 final size:71
Alignment explanation
Indices: 7587--7719 Score: 178
Period size: 71 Copynumber: 1.9 Consensus size: 71
7577 CTCTTGTAGA
* *
7587 CTTTTGAAAAAGTTGCCACCAACTCGTGTAGACTTTAAAATGGTTGTCACCAACTCGTGTGGGCA
1 CTTTTGAAAAAGTTACCACCAACTCGTGTAGACTTTAAAATGGTTGCCACCAACTCGTGTGGGCA
7652 TTTGGG
66 TTTGGG
* * * * * *
7658 CTTTTGAAAAGGTTACCACCAACTCTTTTAGGCTTTTGAAA-GGTTGCCATCAACTCGTGTGG
1 CTTTTGAAAAAGTTACCACCAACTCGTGTAGAC-TTTAAAATGGTTGCCACCAACTCGTGTGG
7720 ACTTTGAAAT
Statistics
Matches: 53, Mismatches: 8, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
71 47 0.89
72 6 0.11
ACGTcount: A:0.25, C:0.20, G:0.23, T:0.32
Consensus pattern (71 bp):
CTTTTGAAAAAGTTACCACCAACTCGTGTAGACTTTAAAATGGTTGCCACCAACTCGTGTGGGCA
TTTGGG
Found at i:7740 original size:102 final size:103
Alignment explanation
Indices: 7560--7755 Score: 277
Period size: 102 Copynumber: 1.9 Consensus size: 103
7550 TGTGGACTTC
* *
7560 GAAAAGGTTGCCAATAACTCTTGTAGACTTTTGAAAAAGTTGCCACCAACTCGTGTAGACTTTAA
1 GAAAAGGTTACCAACAACTCTTGTAGACTTTTGAAAAAGTTGCCACCAACTCGTGTAGACTTTAA
* * *
7625 AATGGTTGTCACCAACTCGTGTGGGCATTTGGGCTTTT
66 AATGGTTGCCACCAACTAGTGTGGACATTTGGGCTTTT
* * * * * * *
7663 GAAAAGGTTACCACCAACTCTTTTAGGCTTTTG-AAAGGTTGCCATCAACTCGTGTGGACTTTGA
1 GAAAAGGTTACCAACAACTCTTGTAGACTTTTGAAAAAGTTGCCACCAACTCGTGTAGACTTTAA
7727 AATGGTTGCCACCAACTAGTGTGGACATT
66 AATGGTTGCCACCAACTAGTGTGGACATT
7756 GAAAGGGTTG
Statistics
Matches: 81, Mismatches: 12, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
102 53 0.65
103 28 0.35
ACGTcount: A:0.27, C:0.19, G:0.22, T:0.31
Consensus pattern (103 bp):
GAAAAGGTTACCAACAACTCTTGTAGACTTTTGAAAAAGTTGCCACCAACTCGTGTAGACTTTAA
AATGGTTGCCACCAACTAGTGTGGACATTTGGGCTTTT
Found at i:8783 original size:221 final size:221
Alignment explanation
Indices: 8352--8857 Score: 513
Period size: 221 Copynumber: 2.3 Consensus size: 221
8342 GTTGGCTATA
* * *
8352 AAAAGGTTGCCACCAACTCGTGC-GGATTTTGAAAAGGTTGCCATCAACTC--GTGTAGGCTTTT
1 AAAAGGTTGCCACCAACTCGTGCAGG-CTTTGAAAA-GTTGCCACCAACTCGTGTGTAGAC-TTT
* * * *
8414 AAAAAGGCTGCCATCAACTCGTGTAGGCTTTTAAAAAGGCTGCCATCAACTCGTGTAGGCTTTTA
63 GAAAAGGCTGCCATCAACTCATGTAGGCATTTAAAAAGGCTGCCACCAACTCGTGTAGGCTTTTA
* * * *
8479 AAAAAGCTGCCATCAACTAGTGTGGACTTTGAAAAGGTTGCCCCCAACGAGTATGGACTTTTGAA
128 AAAAAGCTACCACCAACTAGTGCGGACTTTAAAAAGGTTGCCCCCAACGAGTATGGACTTTTGAA
* * *
8544 AAGATTACCACAAACTTGTGTGGACATTG
193 AAGAGTACCACAAACTTGTATAGACATTG
* * *
8573 ACAAGGTTGCCACTAACTCGTGCAGGCTTTGAAAAGTTACCACCAACTCGTGTGTAGACTTTGAA
1 AAAAGGTTGCCACCAACTCGTGCAGGCTTTGAAAAGTTGCCACCAACTCGTGTGTAGACTTTGAA
* * * *
8638 AAGGTTGCCATCAAGTCATGTGGGCATTTAAAAAGGCTGCCACCAACTCGTGTGGGCTTTTAAAA
66 AAGGCTGCCATCAACTCATGTAGGCATTTAAAAAGGCTGCCACCAACTCGTGTAGGCTTTTAAAA
* ** * * ** ** ** *
8703 AAGTTACCACCATTTCGTGCGGGCTTTTAAAAATTTTGCCTTCAACTTGTGTGGAC-TTTGAATA
131 AAGCTACCACCAACTAGTGCGGAC-TTTAAAAAGGTTGCCCCCAACGAGTATGGACTTTTGAA-A
* * * *
8767 TG-GTGCCACCAACTTGTATAGACTTTG
194 AGAGTACCACAAACTTGTATAGACATTG
* ** * * *
8794 AAAAGGTTACCACCAACTTATGAAGGCTTCTGGAAAGGTTGCCACCTACTCGTGTG--GACTTTG
1 AAAAGGTTGCCACCAACTCGTGCAGGCTT-T-GAAAAGTTGCCACCAACTCGTGTGTAGACTTTG
8857 A
64 A
8858 CTATAGGGCA
Statistics
Matches: 232, Mismatches: 46, Indels: 14
0.79 0.16 0.05
Matches are distributed among these distances:
220 12 0.05
221 164 0.71
222 35 0.15
223 21 0.09
ACGTcount: A:0.28, C:0.21, G:0.22, T:0.28
Consensus pattern (221 bp):
AAAAGGTTGCCACCAACTCGTGCAGGCTTTGAAAAGTTGCCACCAACTCGTGTGTAGACTTTGAA
AAGGCTGCCATCAACTCATGTAGGCATTTAAAAAGGCTGCCACCAACTCGTGTAGGCTTTTAAAA
AAGCTACCACCAACTAGTGCGGACTTTAAAAAGGTTGCCCCCAACGAGTATGGACTTTTGAAAAG
AGTACCACAAACTTGTATAGACATTG
Found at i:8834 original size:253 final size:252
Alignment explanation
Indices: 8352--9219 Score: 624
Period size: 253 Copynumber: 3.5 Consensus size: 252
8342 GTTGGCTATA
* * * *
8352 AAAAGGTTGCCACCAACTCGTGCGGATTTTGAAAAGGTTGCCATCAACTCGTGTAGGCTTTTAAA
1 AAAAGGTTACCACCAACTCGTGCGGACTTTGAAAAGGTTGCCATCAACTCATGTAGGCATTTAAA
* * * * *
8417 AAGGCTGCCATCAACTCGTGTAGGCTTTTAAAAAGGCTGCCATCAACTCGTGTAGGCTTTTAAAA
66 AAGGCTGCCACCAACTCGTGTAGGCTTTTAAAAAAGCTACCACCAACTCGTGCAGGCTTTTAAAA
* *
8482 AAGCTGCCATCAACTAGTGTGGACTTTGAAAAGGTTGCCCCCAACGAGTATGGACTTTTGAAAAG
131 AAGCTGCCATCAACTAGTGTGGACTTTGAAAAGGTTGCCACCAACGAGTATAGACTTTTGAAAAG
* *
8547 ATTACCACAAACTTGTGTGGACATTGACAAGGTTGCCA-CTAACTCGTGCAGGCTTTG
196 ATTACCACAAACTTATGAGGACATTGACAAGGTTGCCACCT-ACTCGTGCAGGCTTTG
* * *
8604 AAAA-GTTACCACCAACTCGTGTGTAGACTTTGAAAAGGTTGCCATCAAGTCATGTGGGCATTTA
1 AAAAGGTTACCACCAACTCGTGCG--GACTTTGAAAAGGTTGCCATCAACTCATGTAGGCATTTA
* * ** *
8668 AAAAGGCTGCCACCAACTCGTGTGGGCTTTTAAAAAAGTTACCACCATTTCGTGCGGGCTTTTAA
64 AAAAGGCTGCCACCAACTCGTGTAGGCTTTTAAAAAAGCTACCACCAACTCGTGCAGGCTTTTAA
*** * * * **
8733 AAATTTTGCCTTCAACTTGTGTGGACTTTGAATATGG-TGCCACCAACTTGTATAGAC-TTTGAA
129 AAAAGCTGCCATCAACTAGTGTGGACTTTGAA-AAGGTTGCCACCAACGAGTATAGACTTTTGAA
* * * *
8796 AAGGTTACCACCAACTTATGAAGG-CTTCTGGA-AAGGTTGCCACCTACTCGTG-TGGACTTTG
193 AAGATTACCACAAACTTATG-AGGACAT-T-GACAAGGTTGCCACCTACTCGTGCAGG-CTTTG
* * * * * ** * * * *
8857 ACTATAGG--GCAATCAACTTGTGTAGACTTTGAAAAGGTTGCCACCAACTTATGTAGAC-TTCG
1 A--AAAGGTTACCACCAACTCGTGCGGACTTTGAAAAGGTTGCCATCAACTCATGTAGGCATT-T
** * * * * * * * *
8919 AAAAA-ATTACCACCAACTCGTATAGG-TTATTGAAAAGGTTGCCACCAACTCATG--GAC-TTT
63 AAAAAGGCTGCCACCAACTCGTGTAGGCTT-TTAAAAAAGCTACCACCAACTCGTGCAGGCTTTT
* * * * * * * ** * * *
8979 AAAAAAGTTTCCACCAATTCGGGT-AAGCTTTTGAAAAGGTTGCCACCAACTTGTGTAGCCTTCT
127 AAAAAAGCTGCCATCAACTAGTGTGGA-C-TTTGAAAAGGTTGCCACCAACGAGTATAGACTTTT
* * * * * * * * * *
9043 GAAAAGGTTACCACCAACTCATGTGGAC-TATGACTATGTTGCC-CCAAACTTGTG-TGAACTTT
190 GAAAAGATTACCACAAACTTATGAGGACAT-TGACAAGGTTGCCACC-TACTCGTGCAG-GCTTT
9105 G
252 G
* * * * * * * * *
9106 AAAAGGTTGCCACCAACTCGTGTGGACTTTTTAAACGGTTGCCAACAAATCACGTGGGC-TTTGA
1 AAAAGGTTACCACCAACTCGTGCGGAC-TTTGAAAAGGTTGCCATCAACTCATGTAGGCATTTAA
* * * * *
9170 AAAGGTTGCCACCAACTCGTGTGGGCTTTTAAAAAGGTTACCACAAACTC
65 AAAGGCTGCCACCAACTCGTGTAGGCTTTTAAAAAAGCTACCACCAACTC
9220 ATGTAAGCCT
Statistics
Matches: 490, Mismatches: 100, Indels: 54
0.76 0.16 0.08
Matches are distributed among these distances:
247 5 0.01
248 27 0.06
249 70 0.14
250 88 0.18
251 56 0.11
252 65 0.13
253 158 0.32
254 18 0.04
255 2 0.00
256 1 0.00
ACGTcount: A:0.29, C:0.21, G:0.21, T:0.28
Consensus pattern (252 bp):
AAAAGGTTACCACCAACTCGTGCGGACTTTGAAAAGGTTGCCATCAACTCATGTAGGCATTTAAA
AAGGCTGCCACCAACTCGTGTAGGCTTTTAAAAAAGCTACCACCAACTCGTGCAGGCTTTTAAAA
AAGCTGCCATCAACTAGTGTGGACTTTGAAAAGGTTGCCACCAACGAGTATAGACTTTTGAAAAG
ATTACCACAAACTTATGAGGACATTGACAAGGTTGCCACCTACTCGTGCAGGCTTTG
Found at i:9013 original size:61 final size:61
Alignment explanation
Indices: 8884--9062 Score: 184
Period size: 61 Copynumber: 2.9 Consensus size: 61
8874 TTGTGTAGAC
* *
8884 TTTGAAAAGGTTGCCACCAACTTATGTAGACTTCGAAAAAATTACCACCAACTCGTATAGGT
1 TTTGAAAAGGTTGCCACCAACTCATG-AGACTTCGAAAAAATTACCACCAACTCGTATAGCT
* * *
8946 TATTGAAAAGGTTGCCACCAACTCATG-GACTT-TAAAAAAGTTTCCACCAATTCGGGTA-AGCT
1 T-TTGAAAAGGTTGCCACCAACTCATGAGACTTCGAAAAAA-TTACCACCAACTC--GTATAGCT
** * **
9008 TTTGAAAAGGTTGCCACCAACTTGTGTAGCCTTCTGAAAAGGTTACCACCAACTC
1 TTTGAAAAGGTTGCCACCAACTCATG-AGACTTC-GAAAAAATTACCACCAACTC
9063 ATGTGGACTA
Statistics
Matches: 96, Mismatches: 13, Indels: 14
0.78 0.11 0.11
Matches are distributed among these distances:
60 6 0.06
61 39 0.41
62 5 0.05
63 31 0.32
64 11 0.11
65 4 0.04
ACGTcount: A:0.33, C:0.22, G:0.17, T:0.27
Consensus pattern (61 bp):
TTTGAAAAGGTTGCCACCAACTCATGAGACTTCGAAAAAATTACCACCAACTCGTATAGCT
Found at i:9989 original size:63 final size:62
Alignment explanation
Indices: 7660--14181 Score: 1947
Period size: 63 Copynumber: 102.7 Consensus size: 62
7650 CATTTGGGCT
* * * * *
7660 TTTGAAAAGGTTACCACCAACTCTTTTAGGCTTTTG-AAAGGTTGCCATCAACTCGTGTGGAC
1 TTTGAAAAGGTTGCCACCAACTCGTGTGGGCTTTTGAAAAGGTTGCCACCAACTC-TGTGGAC
* * * * * * * *
7722 TTTGAAATGGTTGCCACCAACTAGTGTGGAC-ATTGAAAGGGTTGCCACCAATTAGTTTGTG-C
1 TTTGAAAAGGTTGCCACCAACTCGTGTGGGCTTTTGAAAAGGTTGCCACCAACT-CTGTG-GAC
* * * * * * *
7784 TTTTGAAAAGGTTGCCAGCAGCTCATGTGGAC-TTTGAAAAGTTTGCCACTAACTCATAG-GGGC
1 -TTTGAAAAGGTTGCCACCAACTCGTGTGGGCTTTTGAAAAGGTTGCCACCAACTC-T-GTGGAC
* * ** * ** * * * *
7847 TTTGAAAAAGTTACC-TTAACTTGTGT-GGAATTTGAAAAGGTTGCTATCAACTTGTGTGGCC
1 TTTGAAAAGGTTGCCACCAACTCGTGTGGGCTTTTGAAAAGGTTGCCACCAAC-TCTGTGGAC
* ** * *
7908 TTTTAAAAAGGCAGCCAACAACTCGTGTGGGCTTTTG-AAAGATTGCCACCAACTCATGTGGAC
1 -TTTGAAAAGGTTGCCACCAACTCGTGTGGGCTTTTGAAAAGGTTGCCACCAACTC-TGTGGAC
* * * * *
7971 TTTGAAAAGGTTGCCACTAACTCGTATGTGC-TTTGAAAAGGTTACCACCAACTCCTATGGAC
1 TTTGAAAAGGTTGCCACCAACTCGTGTGGGCTTTTGAAAAGGTTGCCACCAACT-CTGTGGAC
* * * *** * *
8033 TTTGAAAAGGTTGCCATCAACTCGTGTAGG-TTTTTAAAAGGGCAACCACCAACTCGTATGGGC
1 TTTGAAAAGGTTGCCACCAACTCGTGTGGGCTTTTGAAAA-GGTTGCCACCAACTC-TGTGGAC
* * * *** *
8096 TTTTGAAAAGGTTGCCACCAACTCATGTAGGCTTTCGAAAATAATACCACCAA-TGCGTGTGGAC
1 -TTTGAAAAGGTTGCCACCAACTCGTGTGGGCTTTTGAAAAGGTTGCCACCAACT-C-TGTGGAC
* * * * * ** ** *
8160 TTTGACTATAGG--GCCACCAACTTGTATAGAC-TTTGAAAATATTGCCACCTGCTC-GTATGAG
1 TTTGA--AAAGGTTGCCACCAACTCGTGTGGGCTTTTGAAAAGGTTGCCACCAACTCTGT-GGA-
8221 C
62 C
** * * *
8222 ATTTGAAAAGGTTAG-CACCAACTCGTGTGAAC-TTTGAAATGGTTGCCTCCAACTAGTGTGGAC
1 -TTTGAAAAGGTT-GCCACCAACTCGTGTGGGCTTTTGAAAAGGTTGCCACCAACT-CTGTGGAC
* *** * * *
8285 TTTTGAAATGGTTGCCACCAACTCGTGTATAC-TTTAAAAATGTTGCTACCAACTCGTGTTGG-C
1 -TTTGAAAAGGTTGCCACCAACTCGTGTGGGCTTTTGAAAAGGTTGCCACCAACTC-TG-TGGAC
* * * * *
8348 TATAAAAAGGTTGCCACCAACTCGTG-CGGATTTTGAAAAGGTTGCCATCAACTCGTGTAGG-C
1 TTTGAAAAGGTTGCCACCAACTCGTGTGGGCTTTTGAAAAGGTTGCCACCAACTC-TGT-GGAC
* * * * * * *
8410 TTTTAAAAAGGCTGCCATCAACTCGTGTAGGCTTTTAAAAAGGCTGCCATCAACTCGTGTAGG-C
1 -TTTGAAAAGGTTGCCACCAACTCGTGTGGGCTTTTGAAAAGGTTGCCACCAACTC-TGT-GGAC
* * * * * * * ** *
8474 TTTTAAAAAAGCTGCCATCAACTAGTGTGGAC-TTTGAAAAGGTTGCCCCCAACGAGTATGGAC
1 -TTTGAAAAGGTTGCCACCAACTCGTGTGGGCTTTTGAAAAGGTTGCCACCAAC-TCTGTGGAC
* * * * * * * * *
8537 TTTTGAAAAGATTACCACAAACTTGTGTGGAC-ATTGACAAGGTTGCCACTAACTC-GTGCAGGC
1 -TTTGAAAAGGTTGCCACCAACTCGTGTGGGCTTTTGAAAAGGTTGCCACCAACTCTGTG--GAC
* * * * *
8600 TTTGAAAA-GTTACCACCAACTCGTGTGTAGAC-TTTGAAAAGGTTGCCATCAAGTCATGTGGGC
1 TTTGAAAAGGTTGCCACCAACTCGTGTG--GGCTTTTGAAAAGGTTGCCACCAACTC-TGTGGAC
* * * * * ** * *
8663 ATTTAAAAAGGCTGCCACCAACTCGTGTGGGCTTTTAAAAAAGTTACCACCATTTCGTGCGGGC
1 -TTTGAAAAGGTTGCCACCAACTCGTGTGGGCTTTTGAAAAGGTTGCCACCAACTC-TGTGGAC
* ** ** * * * *
8727 TTTTAAAAATTTTGCCTTCAACTTGTGTGGAC-TTTGAATATGG-TGCCACCAACT-TGTATAGA
1 -TTTGAAAAGGTTGCCACCAACTCGTGTGGGCTTTTGAA-AAGGTTGCCACCAACTCTG--TGGA
8789 C
62 C
* ** ** * * *
8790 TTTGAAAAGGTTACCACCAACTTATGAAGGCTTCTGGAAAGGTTGCCACCTACTCGTGTGGAC
1 TTTGAAAAGGTTGCCACCAACTCGTGTGGGCTTTTGAAAAGGTTGCCACCAACTC-TGTGGAC
* * * * * * * *
8853 TTTGACTATAGG--GCAATCAACTTGTGTAGAC-TTTGAAAAGGTTGCCACCAACTTATGTAGAC
1 TTTGA--AAAGGTTGCCACCAACTCGTGTGGGCTTTTGAAAAGGTTGCCACCAAC-TCTGTGGAC
* ** * * * *
8915 TTCGAAAAAATTACCACCAACTCGTATAGG-TTATTGAAAAGGTTGCCACCAACTC-ATGGAC
1 TTTGAAAAGGTTGCCACCAACTCGTGTGGGCTT-TTGAAAAGGTTGCCACCAACTCTGTGGAC
* * * * * ** *
8976 TTTAAAAAAGTTTCCACCAATTCGGGTAAGCTTTTGAAAAGGTTGCCACCAACT-TGTGTAGCC
1 TTTGAAAAGGTTGCCACCAACTCGTGTGGGCTTTTGAAAAGGTTGCCACCAACTCTGTG--GAC
* * * * ** *
9039 TTCTGAAAAGGTTACCACCAACTCATGTGGAC-TATGACTATGTTGCC-CCAAACT-TGTGTGAA
1 TT-TGAAAAGGTTGCCACCAACTCGTGTGGGCTTTTGAAAAGGTTGCCACC-AACTCTGTG-G-A
9101 C
62 C
* * * * * * *
9102 TTTGAAAAGGTTGCCACCAACTCGTGTGGACTTTTTAAACGGTTGCCAACAAATCACGTGGGC
1 TTTGAAAAGGTTGCCACCAACTCGTGTGGGCTTTTGAAAAGGTTGCCACCAACTC-TGTGGAC
* * * * *
9165 TTTGAAAAGGTTGCCACCAACTCGTGTGGGCTTTTAAAAAGGTTACCACAAACTCATGTAAGCC
1 TTTGAAAAGGTTGCCACCAACTCGTGTGGGCTTTTGAAAAGGTTGCCACCAACTC-TGT-GGAC
* * * *** * * * *
9229 TTTGAAATGGTTGCTACCAACACGTGTGAAATTTTAAAAAGGTTACCACCAACTCGTGCGGAAT
1 TTTGAAAAGGTTGCCACCAACTCGTGTGGGCTTTTGAAAAGGTTGCCACCAACTC-TGTGG-AC
* * * * * *
9293 TTTGAAAAAGTTGTCACTAACTTGTGTGGGCTTTTGAAAAGGTTACCACCAACTCTTGTAGAC
1 TTTGAAAAGGTTGCCACCAACTCGTGTGGGCTTTTGAAAAGGTTGCCACCAACTC-TGTGGAC
* * * ** * *
9356 TTTTCAAAAGGTTGCCACCAACTCGTGT-GGATATTGAAATA-GTTGCTTCCAACTCGTTTGGGC
1 -TTTGAAAAGGTTGCCACCAACTCGTGTGGGCTTTTGAAA-AGGTTGCCACCAACTC-TGTGGAC
* * * *** *
9419 TTTTGAAAAGGTTGCCACCAACTTC-TGTAGACTTTTG-AAAGGTTTCTGTCAACTCGTGTAGAC
1 -TTTGAAAAGGTTGCCACCAAC-TCGTGTGGGCTTTTGAAAAGGTTGCCACCAACTC-TGTGGAC
* * * *
9482 TTTGAAATGGTTGCCAACAACTCGTGTGGGCTTTTGAAAAGGTTACCACCAACATATGTAGG-C
1 TTTGAAAAGGTTGCCACCAACTCGTGTGGGCTTTTGAAAAGGTTGCCACCAAC-TCTGT-GGAC
* * * * * * * *
9545 TTTTGAAAAGGTTACTACCAATTCATGTAGAC-TTTGACTATA-G-TGCCACAAACTC-GTGTGA
1 -TTTGAAAAGGTTGCCACCAACTCGTGTGGGCTTTTGA--AAAGGTTGCCACCAACTCTGTG-GA
9606 GC
62 -C
* * * *
9608 TTTGAAAAGGTTACCACCAACTCGCGTGGGCTTTT-AAAATGGTTACCACCAACTCGTGTGGGAT
1 TTTGAAAAGGTTGCCACCAACTCGTGTGGGCTTTTGAAAA-GGTTGCCACCAACTC-TGT-GGAC
* * * * * *
9672 TTTGTAAAA-GTTACCATCAACTCGTGTGAGCTTTTAAAAACGTTGCCAACAACTCGTGTAGGA-
1 TTTG-AAAAGGTTGCCACCAACTCGTGTGGGCTTTTGAAAAGGTTGCCACCAACTC-TGT-GGAC
** * * *
9735 TTTGAAAAGGTTGCCACCAACTCGTGTGAACTTTTGAAAATGTTGCCAACAACTTGTGTGGAC
1 TTTGAAAAGGTTGCCACCAACTCGTGTGGGCTTTTGAAAAGGTTGCCACCAAC-TCTGTGGAC
** ** * * * * * *
9798 TTTGAAAAGGTTGTTACCAACTTATGTGAGCTTTGGAAAATGTTGCTACCAACTCATATGGGAT
1 TTTGAAAAGGTTGCCACCAACTCGTGTGGGCTTTTGAAAAGGTTGCCACCAACTC-TGT-GGAC
* * * * * *
9862 TTTGAAAAGGTTGTCACCAACTTGTGTGAGCTTTTGAAAAGGTTGCCAACAATTTATGTGGAC
1 TTTGAAAAGGTTGCCACCAACTCGTGTGGGCTTTTGAAAAGGTTGCCACCAA-CTCTGTGGAC
* *
9925 TTTGAAAAGGTTGTCACCAACTCGTGTGGGCTTTTGAAAAGGTTGCCACCAACTCTCGTAGAC
1 TTTGAAAAGGTTGCCACCAACTCGTGTGGGCTTTTGAAAAGGTTGCCACCAACTCT-GTGGAC
* ** **** * * **
9988 TTTTGAAAATGTTATCACCAACTCGTGCAAAC-TATGAAATGGTTGCCTGCAACTTCTGTGGGCT
1 -TTTGAAAAGGTTGCCACCAACTCGTGTGGGCTTTTGAAAAGGTTGCCACCAAC-TC--T--G--
10052 TTTGGAC
58 --TGGAC
* * * * * * *
10059 TTTTGAAAAGGTTGCCACCATCTCATGTGGAC-TTTGAAAAGGTTGACAGCAACTCATATGGTC
1 -TTTGAAAAGGTTGCCACCAACTCGTGTGGGCTTTTGAAAAGGTTGCCACCAACTC-TGTGGAC
* * * * * * ** * * * * *
10122 TTTAAAAAAAGCTGCGACCAATTCGTTTTTGCATTTGTAAAGGTTGCTACCAACTTATGTGGGC
1 TTT-GAAAAGGTTGCCACCAACTCGTGTGGGCTTTTGAAAAGGTTGCCACCAAC-TCTGTGGAC
* * **
10186 TTTTGAAAATGTTGCCACCAACTCGTGTGGAC-TTTG---ACTTTGGCCACCAACTCGTGTGGAC
1 -TTTGAAAAGGTTGCCACCAACTCGTGTGGGCTTTTGAAAAGGTT-GCCACCAACTC-TGTGGAC
**** ** * * * *
10247 TTTGACTTTGTTGCCACCAACTCGTGTGTAC-TTTGACTATGG-TGCCACTAACT-TGTATAGAC
1 TTTGAAAAGGTTGCCACCAACTCGTGTGGGCTTTTGA-AAAGGTTGCCACCAACTCTG--TGGAC
* * * * ** ** *
10309 TTTAAAAAAGTTTCCAGCAACTCGTGTCAGCTTTTGAAAATATT-ACACCCAACTCGTGTGGAC
1 TTTGAAAAGGTTGCCACCAACTCGTGTGGGCTTTTGAAAAGGTTGCCA-CCAACTC-TGTGGAC
* * ** * *** * *
10372 TTTGACTATGG-TGCCATAAACTTGTGTAAAC-TTTGTAAAGGTTGCCACCAACTCCTGTGGGC
1 TTTGA-AAAGGTTGCCACCAACTCGTGTGGGCTTTTGAAAAGGTTGCCACCAACT-CTGTGGAC
** * * ** * *
10434 TTTTGAAAAGGTTGCCAAAAACTTGTTTGGGC-TTTGAAAATCTTGCCACCAATTCATGTGGATT
1 -TTTGAAAAGGTTGCCACCAACTCGTGTGGGCTTTTGAAAAGGTTGCCACCAACTC-TGTGGA-C
* * * * * *
10498 TTTGTAAAGGGTGCCAACAACTCGTGTGTGCTTTTGAAAAGGTTACCACCAACTCGTGTCGGCC
1 TTTGAAAAGGTTGCCACCAACTCGTGTGGGCTTTTGAAAAGGTTGCCACCAACTC-TGT-GGAC
* ** *
10562 TTGGAAAAGGTTGTTACCAACTCGTGTGGGATTTTGAAATAGTGTT---ACCAACT-TGAGTGGG
1 TTTGAAAAGGTTGCCACCAACTCGTGTGGGCTTTTGAAA-AG-GTTGCCACCAACTCT--GT-GG
10623 AC
61 AC
* * * * *
10625 TTT-AAAAGGGTTGCCACTAACTCGTTTGGGCTTTTGAAAAGGTTGCCAACAACTTGTGTGGAT
1 TTTGAAAA-GGTTGCCACCAACTCGTGTGGGCTTTTGAAAAGGTTGCCACCAAC-TCTGTGGAC
** * * * * * * *
10688 TTTGAAAAGGTTGTTACCAACCCGTCTGGGCATTTGAAAAAGTTTCCAACAACTTGTGTGGAC
1 TTTGAAAAGGTTGCCACCAACTCGTGTGGGCTTTTGAAAAGGTTGCCACCAAC-TCTGTGGAC
* * ** * * * *
10751 TTTGAAAAGGTTGTCACCAACAC-TGTATGTTTTTTAAAAGATTGCCACCAACTCATGTGCGAT
1 TTTGAAAAGGTTGCCACCAACTCGTGTGGGCTTTTGAAAAGGTTGCCACCAACTC-TGTG-GAC
* * * *
10814 TTTGAAAAGGTTGCCACCAACTCGTGTGGGCTTTTGAAAATGTTGCCAACAACTTATGTTGAC
1 TTTGAAAAGGTTGCCACCAACTCGTGTGGGCTTTTGAAAAGGTTGCCACCAAC-TCTGTGGAC
* *** * * * * **
10877 TTCGAAAAGGTTATTACTAACTCGCGTAGACTTTTGAAAAGGTTGCCACCAACTCTCGCAGAC
1 TTTGAAAAGGTTGCCACCAACTCGTGTGGGCTTTTGAAAAGGTTGCCACCAACTCT-GTGGAC
* * *
10940 TTTGAAAAGGTTACCACCAATTCGTATGGATTTTTGGGCTTTTGAAAAGGTTGCCACCAACATGT
1 TTTGAAAAGGTTGCCACCAACTCG--T-G-----TGGGCTTTTGAAAAGGTTGCCACCAAC-TCT
11005 GTGGAC
57 GTGGAC
* * * * * * * * *
11011 TTTGAAAATGTTGCAATCAA-TGCGTGTGGGCTTTAGATAAGGCTGCTACCAACTCGCGTGGGC
1 TTTGAAAAGGTTGCCACCAACT-CGTGTGGGCTTTTGAAAAGGTTGCCACCAACTC-TGTGGAC
* * * * * * * *
11074 TTTTGAAATGGTTCCCATCAACTCATGTGGGCATTTGAAAATGTTACCACGAACTCGTGTGGAC
1 -TTTGAAAAGGTTGCCACCAACTCGTGTGGGCTTTTGAAAAGGTTGCCACCAACTC-TGTGGAC
* * ** * * * *
11138 TTTGACTATGG-TGCCACCAACTTTTATAGAC-TTTGAAAAGGTTGCCACCAACTAATGT-GAGC
1 TTTGA-AAAGGTTGCCACCAACTCGTGTGGGCTTTTGAAAAGGTTGCCACCAACT-CTGTGGA-C
* * **** * * * * **** * *** *
11200 TTCTGAAAATGTTAGACTTTGACT-ATG-GTGC---T-AAAA-CTCG-TGTGAACTTTGAAAAG
1 TT-TGAAAAGGTT-GCCACCAACTCGTGTGGGCTTTTGAAAAGGTTGCCACCAACTCTGTGGAC
* ** * * ** * * **** * * ** * * *
11256 GTT-ACCA----CCAACTCATGTGGGCTTTTAAAATAGTTGCCACCAACTTATG-TA--GA-TTT
1 TTTGAAAAGGTTGCCAC-CAACT---CGTGTGGGCT-TTTG--A-AAAGGT-TGCCACCAACTCT
* * *
11312 TTGAAAA
57 GTG-GAC
** * * * *** *** ** * * * *
11319 TATT-ACCA-----CCAAC-TCGT-GTGGGCCTTTGAAAAGGTTGCTAGCAACTC-A-TGT-TGG
1 T-TTGAAAAGGTTGCCACCAAC-TCGTGTGGGCTTTTGAA--AAGGTTGCCAC-CAACTCTGTGG
**
11373 CT
61 AC
* * * * **** * ** * * *
11375 TTTAAAAATGTTGCCACTAACTCATGTATATTTTTAAAAATATTACCACCAACTCGTGTAAGCC
1 TTTGAAAAGGTTGCCACCAACTCGTGTGGGCTTTTGAAAAGGTTGCCACCAACTC-TGT-GGAC
* * * * * * * * *
11439 TTTGAAAATGTTGCTACTAACTCATGTAGGATTTTGAAAAGGTTCCCACCAACTCGAGTGGGAT
1 TTTGAAAAGGTTGCCACCAACTCGTGTGGGCTTTTGAAAAGGTTGCCACCAACTC-TGT-GGAC
* * * * *
11503 TTTGAAAAGGTTACCACCAACTCGTGTGGGCTTGTGAAAAGGTTGCCAACAACTTGTGTGGAT
1 TTTGAAAAGGTTGCCACCAACTCGTGTGGGCTTTTGAAAAGGTTGCCACCAAC-TCTGTGGAC
** * * * * * * *
11566 TTTGAAAAGGTTATCACTAACTCGGGTGGGC-TTTGAAAAGGTTGGCACCAACTATTATAGAAT
1 TTTGAAAAGGTTGCCACCAACTCGTGTGGGCTTTTGAAAAGGTTGCCACCAACT-CTGT-GGAC
* * * * * * *
11629 TTTAAAAAGGTTACCACTAACTCGTGTGGAC-TTTGAAATGGTTACCACCAATTCGTGTGGGCTT
1 TTTGAAAAGGTTGCCACCAACTCGTGTGGGCTTTTGAAAAGGTTGCCACCAACTC-TGT-GG---
11693 TTAGGC
61 --A--C
* * * * *
11699 TTTTGAAAAGGTTGCCACCAACTCTTGTGGACTTTTG-AAAGGTTGCCATCAATTCCTATGGAC
1 -TTTGAAAAGGTTGCCACCAACTCGTGTGGGCTTTTGAAAAGGTTGCCACCAACT-CTGTGGAC
* * * *
11762 TTTGAAATA-GTTGCCACCAACTCGTGTAGAG-TTTTGAAAAAGTTGCTACCAACTCGTGTGGGT
1 TTTGAAA-AGGTTGCCACCAACTCGTGT-GGGCTTTTGAAAAGGTTGCCACCAACTC-TGT-GGA
*
11825 T
62 C
* * * * * * * *
11826 TTTGAAAAGGTTGCCACTAACTTGTGTGGACTTTTTAAATGGTTGCCAACAACTCACGTGGGC
1 TTTGAAAAGGTTGCCACCAACTCGTGTGGGCTTTTGAAAAGGTTGCCACCAACTC-TGTGGAC
* * * * * *
11889 TTTGAAAAGGTTG-CACCAACTCGTGT-CG-ATTTGAAAAGGTTACGACAAACTCATGTAGGCC
1 TTTGAAAAGGTTGCCACCAACTCGTGTGGGCTTTTGAAAAGGTTGCCACCAACTC-TGT-GGAC
* * * * * * * *
11950 TTTGAAAAGGTTGCTACCAACACGTGCGGGATTTTGAAAAGGTTACCACTAACTCGTGCGGGAT
1 TTTGAAAAGGTTGCCACCAACTCGTGTGGGCTTTTGAAAAGGTTGCCACCAACTC-TG-TGGAC
* *** ** * * * *
12014 TTTGAAAAAGTTATTACCAACTCAAGTGGGCTTTCGAAAA-ATTGCTAACAACT-TGTGCAGAC
1 TTTGAAAAGGTTGCCACCAACTCGTGTGGGCTTTTGAAAAGGTTGCCACCAACTCTGTG--GAC
*** ** * *
12076 TTTGAAAAGGTTATTACCAACTCGTGTAAGCTTTTGAAAAGGTTACCACCAACTCTTGTAGAC
1 TTTGAAAAGGTTGCCACCAACTCGTGTGGGCTTTTGAAAAGGTTGCCACCAACTC-TGTGGAC
* ** * * * * * **
12139 TTTTCAAAATATTACCACCAACTCGTATGGAC-ATT-AAAATAGTTGCTTCCAACTCTTGTGGGC
1 -TTTGAAAAGGTTGCCACCAACTCGTGTGGGCTTTTGAAAA-GGTTGCCACCAACTC-TGT-GG-
12202 TTTTAAGC
61 -----A-C
* * * * ** * *
12210 ATTTGAAAAGGTTGCCA-CAACTCTTATAGACTTTTGAAAATATTGCCAACAACTTGTGTGGAC
1 -TTTGAAAAGGTTGCCACCAACTCGTGTGGGCTTTTGAAAAGGTTGCCACCAAC-TCTGTGGAC
* * * * *
12273 TTTGAAAAGGTTGTCACCAACTCGTGTGAGCTTTTGGAAAGGTTGCTACCAACTCATGTAGGAT
1 TTTGAAAAGGTTGCCACCAACTCGTGTGGGCTTTTGAAAAGGTTGCCACCAACTC-TGT-GGAC
* * *
12337 TTTGAAAAGGTTGCCACCAACTTGTGTGAGCTTTTGAAAAGGTTGCTACCAACTCATGTAGGA-
1 TTTGAAAAGGTTGCCACCAACTCGTGTGGGCTTTTGAAAAGGTTGCCACCAACTC-TGT-GGAC
* * * ** *
12400 TTTCGAAAAGGTTGCCACCAACTCATGTGAGCTTTTGAAACGGTTGTGACCAACTCTCGTAGAC
1 TTT-GAAAAGGTTGCCACCAACTCGTGTGGGCTTTTGAAAAGGTTGCCACCAACTCT-GTGGAC
** * * **** * * *
12464 TTTTGAAAATATTGCCATCAACTTGTGCAAAC-TTTGAAATGATTGCCTCCAACTTGTGTGGGCT
1 -TTTGAAAAGGTTGCCACCAACTCGTGTGGGCTTTTGAAAAGGTTGCCACCAAC-----T---C-
*
12528 TTTGGACC
56 TGTGGA-C
** * ** *
12536 TTTGAAAAGGTTGCCA-CAATCTCGTGTGAAC-TTTGAAAAGATTGATATCAACTCGTGTAGG-C
1 TTTGAAAAGGTTGCCACCAA-CTCGTGTGGGCTTTTGAAAAGGTTGCCACCAACTC-TGT-GGAC
* * * * * ** * * *
12598 TTTAAAAAAGCTACAACCAACTCGTGTTTGCTTTTGAAAAGGTTGCTACCAACTTATGTGGGC
1 TTTGAAAAGGTTGCCACCAACTCGTGTGGGCTTTTGAAAAGGTTGCCACCAAC-TCTGTGGAC
* * ****
12661 TTTTGAAAATGTTGCCACCAACTCGTGTGGAC-TTTGACTTTGTTGCCACCAA-TCCGTGTGGAC
1 -TTTGAAAAGGTTGCCACCAACTCGTGTGGGCTTTTGAAAAGGTTGCCACCAACT-C-TGTGGAC
* * * * ** *** * * * * *
12724 TTTGACTATGG-TGCCGCCAACTTGCATAAAC-TTTAAAAAGGTTACTAGCAACTCGTGTGGGC
1 TTTGA-AAAGGTTGCCACCAACTCGTGTGGGCTTTTGAAAAGGTTGCCACCAACTC-TGTGGAC
** * * * ** * * *
12786 TTTTGAAAATATT-ACACCCAACTCGTGTAGAC-TTTG-ACTGTGGTGCCA-CAACCTCATTTGA
1 -TTTGAAAAGGTTGCCA-CCAACTCGTGTGGGCTTTTGAAAAG-GTTGCCACCAA-CTC-TGTGG
12847 AC
61 AC
* * * ** * * *
12849 TTTGTAAAGGTTGCCACCAACTCGTGTGGGCTTTTGAAAAAGTTTCCAATAACGTGTTTGGGC
1 TTTGAAAAGGTTGCCACCAACTCGTGTGGGCTTTTGAAAAGGTTGCCACCAAC-TCTGTGGAC
* ** * * * * *
12912 TTTAAAAATCTTGCCACCAACTCGTGTGGACTTTTGCAAAGGGTACCACCAACTC-GTGTATGC
1 TTTGAAAAGGTTGCCACCAACTCGTGTGGGCTTTTGAAAAGGTTGCCACCAACTCTGTGGA--C
* * * * ** * *
12975 TATTGAAAAGATTACCACCAACTCGTGTGGGCCTTAGAAAAGGTTGTTACCAACTGATGTGAGAT
1 T-TTGAAAAGGTTGCCACCAACTCGTGTGGGCTTTTGAAAAGGTTGCCACCAACT-CTGTG-GAC
* ** * * * *
13040 TTTGAAATGG-TGTTACCAACTCGAGTAGGATTTT-AAAAGGGTTGCCACCAACT-TGTGTAGGC
1 TTTGAAAAGGTTGCCACCAACTCGTGTGGGCTTTTGAAAA-GGTTGCCACCAACTCTGTG--GAC
* * * ** * *
13102 TTTTGAAAAGGTTGCCAACAACTTGTGT-GGATTTTGAAAAGGTTTTCACCAACCCGTGTGGGC
1 -TTTGAAAAGGTTGCCACCAACTCGTGTGGGCTTTTGAAAAGGTTGCCACCAACTC-TGTGGAC
* * ** * * * * * **
13165 TTTTGAAAAAGTTTCCAATAACTTGTGTGGAC-ATTGAAAAGGTTGTCACCAACACTGTGGGTT
1 -TTTGAAAAGGTTGCCACCAACTCGTGTGGGCTTTTGAAAAGGTTGCCACCAACTCTGT-GGAC
* * * * * * * * *
13228 TTTGAAAAGATTGCTACTAACTCATGTGCGATTTTGAAAAGGTTGCCACAAACTAGTGTGGGC
1 TTTGAAAAGGTTGCCACCAACTCGTGTGGGCTTTTGAAAAGGTTGCCACCAACT-CTGTGGAC
* * ** * * * ** * * *
13291 TTTTGAAAAAGTTGCCAACAACTTATGTTGAC-TTTGAAAATGTTGTTACTAGCTC-GCATGGGC
1 -TTTGAAAAGGTTGCCACCAACTCGTGTGGGCTTTTGAAAAGGTTGCCACCAACTCTG--TGGAC
* * * *
13354 TTTTGAAAAGGTTGCCACCAACTC-TCGTAGACTTTTGAAAAGGTTACCACAAAATCTTATGGGC
1 -TTTGAAAAGGTTGCCACCAACTCGT-GTGGGCTTTTGAAAAGGTTGCCAC-CAA-C---T---C
* *
13418 TTTTGGGC
56 -TGTGGAC
* * * * * * * *
13426 TTTTGAAAGGGTTGCCACTAACACATGTGGAC-TTTGAAAAGGTTTCCATCAACGCGTGTGGAC
1 -TTTGAAAAGGTTGCCACCAACTCGTGTGGGCTTTTGAAAAGGTTGCCACCAACTC-TGTGGAC
* * * ** * *
13489 TTTAAATAAGGCTGCTACCAACTCGTGTGGGCTTTTGAAATA-GTT-CCTATTAACTATGTGGGC
1 TTTGAA-AAGGTTGCCACCAACTCGTGTGGGCTTTTGAAA-AGGTTGCC-ACCAACTCTGTGGAC
* * * * * * * *
13552 TTTTGAAAATGTTGCCACTAACTCGTGTGGAC-TTTGACTATGG-TGCCACCAACTTTTATAGAC
1 -TTTGAAAAGGTTGCCACCAACTCGTGTGGGCTTTTGA-AAAGGTTGCCACCAAC-TCTGTGGAC
* * * * * *
13615 TTTGAAAAGGTTGCCACCAACTTGTGT-GACGTTTTGAAAATGTTG-GACTCTGACTATGGTGCC
1 TTTGAAAAGGTTGCCACCAACTCGTGTGGGC-TTTTGAAAAGGTTGCCAC-C-AACTCT-GTG--
*
13678 ACAAAC
60 ---GAC
* * * * *
13684 TCCTGTGAACTTTGAAAAGGTTACCA-CAACTCATGTGGGCATTTAAAAAGGTTGCCACAAACTC
1 T--T-TG-------AAAAGGTTGCCACCAACTCGTGTGGGCTTTTGAAAAGGTTGCCACCAACTC
*
13748 -GTGCGAATT
56 TGTG-G-A-C
* * * * * * *
13757 TTTGAAAATGTTACCACCAACTCGTATGGGCCTTTGAAAAGGTTGCTACCAACTCGTATAGGAT
1 TTTGAAAAGGTTGCCACCAACTCGTGTGGGCTTTTGAAAAGGTTGCCACCAACTC-TGT-GGAC
* * * ** *
13821 TTTGAAAAGGTTGCCCCCAACTCGTGTGGGTTTTTAAAAAGGTTATCACCAACTCGTGTGGGC
1 TTTGAAAAGGTTGCCACCAACTCGTGTGGGCTTTTGAAAAGGTTGCCACCAACTC-TGTGGAC
* * * * *** * *
13884 TTTTTAAAAGATTGCTAACAACTCACATGGGC-TTTGAAAAGATTACCACCAACT-TGTGCGGAC
1 -TTTGAAAAGGTTGCCACCAACTCGTGTGGGCTTTTGAAAAGGTTGCCACCAACTCTGT--GGAC
* ** * * * * * *
13947 TTTTGAAAAGGTTACCAAAAACTCGTGTAGGCCTTTGAAAAGGTAGCTACCAA-TGTGTGGGAT
1 -TTTGAAAAGGTTGCCACCAACTCGTGTGGGCTTTTGAAAAGGTTGCCACCAACTCTGT-GGAC
* * ** * * *
14010 TTTGAAAAGGTTACTACCAACTCGTGCAGGATTTTGACAAAGG-TGTCACCAACTCATGTGGGC
1 TTTGAAAAGGTTGCCACCAACTCGTGTGGGCTTTTGA-AAAGGTTGCCACCAACTC-TGTGGAC
* * * * * ** *
14073 TTCTCAAAAGGTTGCCA-AAACTTGTGTAGAC-TTTGAAAAGGTTGTTACCAACTCGTGTGGCC
1 TT-TGAAAAGGTTGCCACCAACTCGTGTGGGCTTTTGAAAAGGTTGCCACCAACTC-TGTGGAC
* * * *
14135 TTTGAAAAGGGTTACCACCAACTCTTGTAGACTTTTCG-AAAGGTTGC
1 TTTGAAAA-GGTTGCCACCAACTCGTGTGGGCTTTT-GAAAAGGTTGC
14182 GCAACTCATA
Statistics
Matches: 4790, Mismatches: 1285, Indels: 768
0.70 0.19 0.11
Matches are distributed among these distances:
50 1 0.00
54 3 0.00
55 5 0.00
56 8 0.00
57 7 0.00
58 7 0.00
59 6 0.00
60 73 0.02
61 185 0.04
62 889 0.19
63 1829 0.38
64 1323 0.28
65 89 0.02
66 14 0.00
67 3 0.00
68 3 0.00
69 7 0.00
70 27 0.01
71 220 0.05
72 49 0.01
73 2 0.00
75 3 0.00
77 3 0.00
78 19 0.00
79 15 0.00
ACGTcount: A:0.28, C:0.19, G:0.22, T:0.31
Consensus pattern (62 bp):
TTTGAAAAGGTTGCCACCAACTCGTGTGGGCTTTTGAAAAGGTTGCCACCAACTCTGTGGAC
Found at i:10241 original size:29 final size:30
Alignment explanation
Indices: 10198--10299 Score: 152
Period size: 31 Copynumber: 3.4 Consensus size: 30
10188 TTGAAAATGT
10198 TGCCACCAACTCGTGTGGACTTTGACTTTG
1 TGCCACCAACTCGTGTGGACTTTGACTTTG
10228 -GCCACCAACTCGTGTGGACTTTGACTTTG
1 TGCCACCAACTCGTGTGGACTTTGACTTTG
* *
10257 TTGCCACCAACTCGTGTGTACTTTGACTATGG
1 -TGCCACCAACTCGTGTGGACTTTGACT-TTG
*
10289 TGCCACTAACT
1 TGCCACCAACT
10300 TGTATAGACT
Statistics
Matches: 66, Mismatches: 3, Indels: 5
0.89 0.04 0.07
Matches are distributed among these distances:
29 29 0.44
31 35 0.53
32 2 0.03
ACGTcount: A:0.19, C:0.27, G:0.22, T:0.32
Consensus pattern (30 bp):
TGCCACCAACTCGTGTGGACTTTGACTTTG
Found at i:10368 original size:94 final size:94
Alignment explanation
Indices: 10263--10442 Score: 245
Period size: 94 Copynumber: 1.9 Consensus size: 94
10253 TTTGTTGCCA
* * * *
10263 CCAACTCGTGTGTACTTTGACTATGGTGCCACT-AACTTGTATAGACTTTAAAAAAGTTTCCAGC
1 CCAACTCGTGTGGACTTTGACTATGGTGCCA-TAAACTTGTATAAACTTTAAAAAAGTTGCCACC
*
10327 AACTCGTGTCAGCTTTTGAAAATATTACAC
65 AACTCCTGTCAGCTTTTGAAAATATTACAC
* ** *
10357 CCAACTCGTGTGGACTTTGACTATGGTGCCATAAACTTGTGTAAACTTTGTAAAGGTTGCCACCA
1 CCAACTCGTGTGGACTTTGACTATGGTGCCATAAACTTGTATAAACTTTAAAAAAGTTGCCACCA
**
10422 ACTCCTGTGGGCTTTTGAAAA
66 ACTCCTGTCAGCTTTTGAAAA
10443 GGTTGCCAAA
Statistics
Matches: 74, Mismatches: 11, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
93 1 0.01
94 73 0.99
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.32
Consensus pattern (94 bp):
CCAACTCGTGTGGACTTTGACTATGGTGCCATAAACTTGTATAAACTTTAAAAAAGTTGCCACCA
ACTCCTGTCAGCTTTTGAAAATATTACAC
Found at i:10815 original size:126 final size:125
Alignment explanation
Indices: 9089--10888 Score: 390
Period size: 127 Copynumber: 14.2 Consensus size: 125
9079 TGTTGCCCCA
* * * * * *
9089 AACTTGTGTGAACTTTGAAAAGGTTGCCACCAACTCGTGTGGACTTTTTAAACGGTTGCCAACAA
1 AACTTGTGTGGACTTTGAAAAGGTTGCCACCAACACGTATGG-CTTTTGAAAAGATTGCCAACAA
* * ** ** * *
9154 ATCACGTGGGCTTTGAAAAGGTTGCCACCAACTCGTGTGGGC-TTTTAAAAAGGTTACC-AC
65 CTCATGTGGATTTTGAAAAGGTTGTTACCAACTCGTGTGGGCATTTGAAAAA-GTTTCCAAC
** * * * * * ** * * * *
9214 AAACTCATGTAAGCCTTTGAAATGGTTGCTACCAACACGTGTGAAATTTTAAAAAGGTTACCACC
1 -AACTTGTGT-GGACTTTGAAAAGGTTGCCACCAACACGTATG-GCTTTTGAAAAGATTGCCAAC
* * * * * * * * * *
9279 AACTCGTGCGGAATTTTGAAAAAGTTGTCACTAACTTGTGTGGGCTTTTGAAAAGGTTACCACC
63 AACTCATGTGG-ATTTTGAAAAGGTTGTTACCAACTCGTGTGGGCATTTGAAAAAGTTTCCAAC
* * * * * * ***
9343 AACTCT-TGTAGACTTTTCAAAAGGTTGCCACCAACTCGTGTGGATATTGAAATAG-TTGCTTCC
1 AACT-TGTGTGGAC-TTTGAAAAGGTTGCCACCAACACGTATGGCTTTTGAAA-AGATTGCCAAC
* * * ** * * * * ***
9406 AACTCGTTTGGGCTTTTGAAAAGGTTGCCACCAACTTC-TGTAGACTTTTG-AAAGGTTTCTGTC
63 AACTCATGT-GGATTTTGAAAAGGTTGTTACCAAC-TCGTGTGGGCATTTGAAAAAGTTTCCAAC
* * * * * * * * *
9469 AACTCGTGTAGACTTTGAAATGGTTGCCAACAACTCGTGTGGGCTTTTGAAAAGGTTACCACCAA
1 AACTTGTGTGGACTTTGAAAAGGTTGCCACCAACACGTAT-GGCTTTTGAAAAGATTGCCAACAA
* ** * * * * * * *
9534 CAT-ATGTAGGCTTTTGAAAAGGTTACTACCAATTCATGTAGAC-TTTGACTATAG-TGCC-AC
65 C-TCATGT-GGATTTTGAAAAGGTTGTTACCAACTCGTGTGGGCATTTGA-AAAAGTTTCCAAC
* * * ** * * *
9594 AAACTCGTGT-GAGCTTTGAAAAGGTTACCACCAACTCGCGTGGGCTTTT-AAAATGGTTACCAC
1 -AACTTGTGTGGA-CTTTGAAAAGGTTGCCACCAACACGTAT-GGCTTTTGAAAA-GATTGCCAA
* *** * * * *
9657 CAACTCGTGTGGGATTTTGTAAAA-GTTACCATCAACTCGTGTGAGC-TTTTAAAAACGTTGCCA
62 CAACTCATGT-GGATTTTG-AAAAGGTTGTTACCAACTCGTGTGGGCATTTGAAAAA-GTTTCCA
9720 AC
124 AC
* * * *
9722 AACTCGTGTAGGA-TTTGAAAAGGTTGCCACCAACTCGTGTGAACTTTTGAAAATG-TTGCCAAC
1 AACTTGTGT-GGACTTTGAAAAGGTTGCCACCAACACGTATG-GCTTTTGAAAA-GATTGCCAAC
** * ** * * * * *
9785 AACTTGTGTGGACTTTGAAAAGGTTGTTACCAACTTATGTGAGC-TTTGGAAAATGTTGCTACC
63 AACTCATGTGGATTTTGAAAAGGTTGTTACCAACTCGTGTGGGCATTT-GAAAAAGTTTCCAAC
* * * ** * *
9848 AACTCATATG-GGATTTTGAAAAGGTTGTCACCAACTTGTGTGAGCTTTTGAAAAGGTTGCCAAC
1 AACT--TGTGTGGACTTTGAAAAGGTTGCCACCAACACGTATG-GCTTTTGAAAAGATTGCCAAC
* * * * * * * *
9912 AATTTATGTGGACTTTGAAAAGGTTGTCACCAACTCGTGTGGGCTTTTGAAAAGGTTGCCACC
63 AACTCATGTGGATTTTGAAAAGGTTGTTACCAACTCGTGTGGGCATTTGAAAAAGTTTCCAAC
* * * ** * ** * * * **
9975 AACTCT-CGTAGACTTTTGAAAATGTTATCACCAACTCGTGCA-AAC-TATGAAATGGTTGCCTG
1 AACT-TGTGTGGAC-TTTGAAAAGGTTGCCACCAACACGT--ATGGCTTTTGAAAAGATTGCCAA
* ** * * * *
10037 CAACTTCTGTGGGCTTTTGGACTTTTGAAAAGGTTGCCACCATCTCATGTGGAC-TTTGAAAAGG
62 CAAC-TC-AT--G----TGGA-TTTTGAAAAGGTTGTTACCAACTCGTGTGGGCATTTGAAAAAG
** *
10101 TTGACAGC
118 TTTCCAAC
** * * * * * * ** * * * * * * *
10109 AACTCATATGGTCTTTAAAAAAAGCTGCGACCAATTCGTTTTTGCATTTGTAAAGGTTGCTACCA
1 AACTTGTGTGGACTTT-GAAAAGGTTGCCACCAACACG-TATGGCTTTTGAAAAGATTGCCAACA
* * * ** * * *
10174 ACTTATGTGGGCTTTTGAAAATGTTGCCACCAACTCGTGTGGAC-TTTG----ACTTTGGCCACC
64 ACTCATGT-GGATTTTGAAAAGGTTGTTACCAACTCGTGTGGGCATTTGAAAAAGTTT--CCAAC
* **** * * * * * *
10234 AACTCGTGTGGACTTTGACTTTGTTGCCACCAACTCGTGTGTAC-TTTGACTATG-GTGCC-ACT
1 AACTTGTGTGGACTTTGAAAAGGTTGCCACCAACACGTATG-GCTTTTGA-AAAGATTGCCAAC-
** * * * * * * * ** * * *
10296 AACTTGTATAGACTTTAAAAAAGTT-TCCAGCAACTCGTGTCAGCTTTTG-AAAA-TATTACACC
63 AACTCATGTGGATTTTGAAAAGGTTGT-TACCAACTCGTGTGGGCATTTGAAAAAGT-TTCCA-A
10358 C
125 C
* * * ** ** * ** * * *
10359 AACTCGTGTGGACTTTGACTATGG-TGCCATAAACTTGTGTAAAC-TTTGTAAAGGTTGCCACCA
1 AACTTGTGTGGACTTTGA-AAAGGTTGCCACCAACACGTAT-GGCTTTTGAAAAGATTGCCAACA
* * ** ** * * ** * *
10422 ACTCCTGTGGGCTTTTGAAAAGGTTGCCAAAAACTTGTTTGGGC-TTTGAAAATCTTGCCACC
64 ACTCATGT-GGATTTTGAAAAGGTTGTTACCAACTCGTGTGGGCATTTGAAAAAGTTTCCAAC
* * * * * * * * * *
10484 AA-TTCATGTGGATTTTTGTAAAGGGTGCCAACAACTCGTGTGTGCTTTTGAAAAGGTTACCACC
1 AACTT-GTGTGGA-CTTTGAAAAGGTTGCCACCAACACGTATG-GCTTTTGAAAAGATTGCCAAC
* ** * * *
10548 AACTCGTGTCGGCCTTGGAAAAGGTTGTTACCAACTCGTGTGGG-ATTTTGAAATAGTGTT--AC
63 AACTCATGT-GGATTTTGAAAAGGTTGTTACCAACTCGTGTGGGCA-TTTGAAAAAGT-TTCCAA
10610 C
125 C
* * * * *
10611 AACTTGAGTGGGACTTT-AAAAGGGTTGCCACTAACTCGTTTGGGCTTTTGAAAAGGTTGCCAAC
1 AACTTGTGT-GGACTTTGAAAA-GGTTGCCACCAACACGTAT-GGCTTTTGAAAAGATTGCCAAC
** * *
10675 AACTTGTGTGGATTTTGAAAAGGTTGTTACCAACCCGTCTGGGCATTTGAAAAAGTTTCCAAC
63 AACTCATGTGGATTTTGAAAAGGTTGTTACCAACTCGTGTGGGCATTTGAAAAAGTTTCCAAC
* * * *
10738 AACTTGTGTGGACTTTGAAAAGGTTGTCACCAACACTGTAT-GTTTTTTAAAAGATTGCCACCAA
1 AACTTGTGTGGACTTTGAAAAGGTTGCCACCAACAC-GTATGGCTTTTGAAAAGATTGCCAACAA
** * * *
10802 CTCATGTGCGATTTTGAAAAGGTTGCCACCAACTCGTGTGGGCTTTTGAAAATGTTGCCAAC
65 CTCATGTG-GATTTTGAAAAGGTTGTTACCAACTCGTGTGGGCATTTGAAAAAGTTTCCAAC
* * *
10864 AACTTATGTTGACTTCGAAAAGGTT
1 AACTTGTGTGGACTTTGAAAAGGTT
10889 ATTACTAACT
Statistics
Matches: 1276, Mismatches: 305, Indels: 186
0.72 0.17 0.11
Matches are distributed among these distances:
122 25 0.02
123 22 0.02
124 21 0.02
125 157 0.12
126 403 0.32
127 446 0.35
128 99 0.08
129 11 0.01
130 1 0.00
131 1 0.00
133 4 0.00
134 43 0.03
135 43 0.03
ACGTcount: A:0.28, C:0.19, G:0.22, T:0.32
Consensus pattern (125 bp):
AACTTGTGTGGACTTTGAAAAGGTTGCCACCAACACGTATGGCTTTTGAAAAGATTGCCAACAAC
TCATGTGGATTTTGAAAAGGTTGTTACCAACTCGTGTGGGCATTTGAAAAAGTTTCCAAC
Found at i:11575 original size:31 final size:31
Alignment explanation
Indices: 11234--13659 Score: 887
Period size: 32 Copynumber: 75.8 Consensus size: 31
11224 ATGGTGCTAA
* * *
11234 AACTCGTGTGAACTTTGAAAAGGTTACCACC
1 AACTCGTGTGGATTTTGAAAAGGTTGCCACC
* * *
11265 AACTCATGTGGGCTTTT-AAAATAGTTGCCACC
1 AACTCGTGT-GGATTTTGAAAA-GGTTGCCACC
** * ** *
11297 AACTTATGTAGATTTTTGAAAATATTACCACC
1 AACTCGTGTGGA-TTTTGAAAAGGTTGCCACC
** * *
11329 AACTCGTGTGGGCCTTTGAAAAGGTTGCTAGC
1 AACTCGTGT-GGATTTTGAAAAGGTTGCCACC
* * * * *
11361 AACTCATGTTGGCTTTTAAAAATGTTGCCACT
1 AACTCGTG-TGGATTTTGAAAAGGTTGCCACC
* ** * ** *
11393 AACTCATGTATATTTTTAAAAATATTACCACC
1 AACTCGTGTGGA-TTTTGAAAAGGTTGCCACC
* ** * * *
11425 AACTCGTGTAAGCCTTTGAAAATGTTGCTACT
1 AACTCGTGT-GGATTTTGAAAAGGTTGCCACC
* *
11457 AACTCATGTAGGATTTTGAAAAGGTTCCCACC
1 AACTCGTGT-GGATTTTGAAAAGGTTGCCACC
* *
11489 AACTCGAGTGGGATTTTGAAAAGGTTACCACC
1 AACTCGTGT-GGATTTTGAAAAGGTTGCCACC
* * *
11521 AACTCGTGTGGGCTTGTGAAAAGGTTGCCAAC
1 AACTCGTGT-GGATTTTGAAAAGGTTGCCACC
* ** *
11553 AACTTGTGTGGATTTTGAAAAGGTTATCACT
1 AACTCGTGTGGATTTTGAAAAGGTTGCCACC
* ** *
11584 AACTCGGGTGGGCTTTGAAAAGGTTGGCACC
1 AACTCGTGTGGATTTTGAAAAGGTTGCCACC
** * * * * *
11615 AACTATTATAGAATTTTAAAAAGGTTACCACT
1 AACTCGTGT-GGATTTTGAAAAGGTTGCCACC
* * *
11647 AACTCGTGTGGACTTTGAAATGGTTACCACC
1 AACTCGTGTGGATTTTGAAAAGGTTGCCACC
*
11678 AATTCGTGTGGGCTTTTAGGCTTTTGAAAAGGTTGCCACC
1 AACTCGTGT-GG-----A---TTTTGAAAAGGTTGCCACC
* *
11718 AACTCTTGTGGACTTTTG-AAAGGTTGCCATC
1 AACTCGTGTGGA-TTTTGAAAAGGTTGCCACC
* * * *
11749 AATTCCTATGGACTTTGAAATA-GTTGCCACC
1 AACTCGTGTGGATTTTGAAA-AGGTTGCCACC
* * *
11780 AACTCGTGTAGAGTTTTGAAAAAGTTGCTACC
1 AACTCGTGTGGA-TTTTGAAAAGGTTGCCACC
* *
11812 AACTCGTGTGGGTTTTTGAAAAGGTTGCCACT
1 AACTCGTGT-GGATTTTGAAAAGGTTGCCACC
* * * *
11844 AACTTGTGTGGACTTTTTAAATGGTTGCCAAC
1 AACTCGTGTGGA-TTTTGAAAAGGTTGCCACC
** **
11876 AACTCACGTGGGCTTTGAAAAGGTTG-CACC
1 AACTCGTGTGGATTTTGAAAAGGTTGCCACC
* * * *
11906 AACTCGTGTCGA-TTTGAAAAGGTTACGACA
1 AACTCGTGTGGATTTTGAAAAGGTTGCCACC
* ** *
11936 AACTCATGTAGGCCTTTGAAAAGGTTGCTACC
1 AACTCGTGT-GGATTTTGAAAAGGTTGCCACC
* * * *
11968 AACACGTGCGGGATTTTGAAAAGGTTACCACT
1 AACTCGTG-TGGATTTTGAAAAGGTTGCCACC
* * ***
12000 AACTCGTGCGGGATTTTGAAAAAGTTATTACC
1 AACTCGTG-TGGATTTTGAAAAGGTTGCCACC
* * * * *
12032 AACTCAAGTG-GGCTTTCGAAAA-ATTGCTAAC
1 AACTC--GTGTGGATTTTGAAAAGGTTGCCACC
* ** * ***
12063 AACTTGTGCAGACTTTGAAAAGGTTATTACC
1 AACTCGTGTGGATTTTGAAAAGGTTGCCACC
* * *
12094 AACTCGTGTAAGCTTTTGAAAAGGTTACCACC
1 AACTCGTGT-GGATTTTGAAAAGGTTGCCACC
* * * ** *
12126 AACTCTTGTAGACTTTTCAAAATATTACCACC
1 AACTCGTGTGGA-TTTTGAAAAGGTTGCCACC
* ** * **
12158 AACTCGTATGGACATT-AAAATAGTTGCTTCC
1 AACTCGTGTGGATTTTGAAAA-GGTTGCCACC
* *
12189 AACTCTTGTGGGCTTTTAAGCATTTGAAAAGGTTGCCA-C
1 AACTCGTGT-GG------A--TTTTGAAAAGGTTGCCACC
* * * ** *
12228 AACTCTTATAGACTTTTGAAAATATTGCCAAC
1 AACTCGTGTGGA-TTTTGAAAAGGTTGCCACC
* * *
12260 AACTTGTGTGGACTTTGAAAAGGTTGTCACC
1 AACTCGTGTGGATTTTGAAAAGGTTGCCACC
* * *
12291 AACTCGTGTGAGCTTTTGGAAAGGTTGCTACC
1 AACTCGTGTG-GATTTTGAAAAGGTTGCCACC
*
12323 AACTCATGTAGGATTTTGAAAAGGTTGCCACC
1 AACTCGTGT-GGATTTTGAAAAGGTTGCCACC
* * *
12355 AACTTGTGTGAGCTTTTGAAAAGGTTGCTACC
1 AACTCGTGTG-GATTTTGAAAAGGTTGCCACC
* *
12387 AACTCATGTAGGATTTCGAAAAGGTTGCCACC
1 AACTCGTGT-GGATTTTGAAAAGGTTGCCACC
* * * **
12419 AACTCATGTGAGCTTTTGAAACGGTTGTGACC
1 AACTCGTGTG-GATTTTGAAAAGGTTGCCACC
* ** *
12451 AACTC-TCGTAGACTTTTGAAAATATTGCCATC
1 AACTCGT-GTGGA-TTTTGAAAAGGTTGCCACC
* *** * * * *
12483 AACTTGTGCAAACTTTGAAATGATTGCCTCC
1 AACTCGTGTGGATTTTGAAAAGGTTGCCACC
* *
12514 AACTTGTGTGGGCTTTTGGACCTTTGAAAAGGTTGCCA-C
1 AAC-T-CGT--G----TGGA-TTTTGAAAAGGTTGCCACC
* * * ** *
12553 AATCTCGTGTGAACTTTGAAAAGATTGATATC
1 AA-CTCGTGTGGATTTTGAAAAGGTTGCCACC
* * * * * *
12585 AACTCGTGTAGG-CTTTAAAAAAGCTACAACC
1 AACTCGTGT-GGATTTTGAAAAGGTTGCCACC
* * *
12616 AACTCGTGTTTGCTTTTGAAAAGGTTGCTACC
1 AACTCGTG-TGGATTTTGAAAAGGTTGCCACC
** * *
12648 AACTTATGTGGGCTTTTGAAAATGTTGCCACC
1 AACTCGTGT-GGATTTTGAAAAGGTTGCCACC
* ****
12680 AACTCGTGTGGACTTTGACTTTGTTGCCACC
1 AACTCGTGTGGATTTTGAAAAGGTTGCCACC
* * * *
12711 AA-TCCGTGTGGACTTTGACTATGG-TGCCGCC
1 AACT-CGTGTGGATTTTGA-AAAGGTTGCCACC
* ** ** * * * * *
12742 AACTTGCATAAACTTTAAAAAGGTTACTAGC
1 AACTCGTGTGGATTTTGAAAAGGTTGCCACC
* ** *
12773 AACTCGTGTGGGCTTTTGAAAATATT-ACACCC
1 AACTCGTGT-GGATTTTGAAAAGGTTGCCA-CC
* * ** *
12805 AACTCGTGTAGACTTTG-ACTGTGGTGCCA-C
1 AACTCGTGTGGATTTTGAAAAG-GTTGCCACC
* * * * *
12835 AACCTCATTTGAACTTTGTAAAGGTTGCCACC
1 AA-CTCGTGTGGATTTTGAAAAGGTTGCCACC
* * * **
12867 AACTCGTGTGGGCTTTTGAAAAAGTTTCCAAT
1 AACTCGTGT-GGATTTTGAAAAGGTTGCCACC
* ** * **
12899 AACGT-GTTTGGGCTTTAAAAATCTTGCCACC
1 AAC-TCGTGTGGATTTTGAAAAGGTTGCCACC
* * *
12930 AACTCGTGTGGACTTTTGCAAAGGGTACCACC
1 AACTCGTGTGGA-TTTTGAAAAGGTTGCCACC
* * * * *
12962 AACTCGTGTATGCTATTGAAAAGATTACCACC
1 AACTCGTGT-GGATTTTGAAAAGGTTGCCACC
** * **
12994 AACTCGTGTGGGCCTTAGAAAAGGTTGTTACC
1 AACTCGTGT-GGATTTTGAAAAGGTTGCCACC
* **
13026 AACT-GATGTGAGATTTTGAAATGG-TGTTACC
1 AACTCG-TGTG-GATTTTGAAAAGGTTGCCACC
*
13057 AACTCGAGTAGGATTTT-AAAAGGGTTGCCACC
1 AACTCGTGT-GGATTTTGAAAA-GGTTGCCACC
* * *
13089 AACTTGTGTAGGCTTTTGAAAAGGTTGCCAAC
1 AACTCGTGT-GGATTTTGAAAAGGTTGCCACC
* **
13121 AACTTGTGTGGATTTTGAAAAGGTTTTCACC
1 AACTCGTGTGGATTTTGAAAAGGTTGCCACC
* * * * **
13152 AACCCGTGTGGGCTTTTGAAAAAGTTTCCAAT
1 AACTCGTGT-GGATTTTGAAAAGGTTGCCACC
* ** *
13184 AACTTGTGTGGACATTGAAAAGGTTGTCACC
1 AACTCGTGTGGATTTTGAAAAGGTTGCCACC
* * * * *
13215 AACAC-TGTGGGTTTTTGAAAAGATTGCTACT
1 AACTCGTGT-GGATTTTGAAAAGGTTGCCACC
* *
13246 AACTCATGTGCGATTTTGAAAAGGTTGCCACA
1 AACTCGTGTG-GATTTTGAAAAGGTTGCCACC
* * * *
13278 AACTAGTGTGGGCTTTTGAAAAAGTTGCCAAC
1 AACTCGTGT-GGATTTTGAAAAGGTTGCCACC
** * * * ** *
13310 AACTTATGTTGACTTTGAAAATGTTGTTACT
1 AACTCGTGTGGATTTTGAAAAGGTTGCCACC
* *
13341 AGCTCGCATG-GGCTTTTGAAAAGGTTGCCACC
1 AACTCG--TGTGGATTTTGAAAAGGTTGCCACC
* * *
13373 AACTC-TCGTAGACTTTTGAAAAGGTTACCACAA
1 AACTCGT-GTGGA-TTTTGAAAAGGTTGCCAC-C
* * * * *
13406 AATCTTATGGGCTTTTGGGCTTTTGAAAGGGTTGCCACT
1 AA-C---T---CGTGT-GGATTTTGAAAAGGTTGCCACC
* * * * *
13445 AACACATGTGGACTTTGAAAAGGTTTCCATC
1 AACTCGTGTGGATTTTGAAAAGGTTGCCACC
* * * * *
13476 AACGCGTGTGGACTTTAAATAAGGCTGCTACC
1 AACTCGTGTGGATTTTGAA-AAGGTTGCCACC
* **
13508 AACTCGTGTGGGCTTTTGAAATA-GTT-CCTATT
1 AACTCGTGT-GGATTTTGAAA-AGGTTGCC-ACC
* * * *
13540 AACT-ATGTGGGCTTTTGAAAATGTTGCCACT
1 AACTCGTGT-GGATTTTGAAAAGGTTGCCACC
* * *
13571 AACTCGTGTGGACTTTGACTATGG-TGCCACC
1 AACTCGTGTGGATTTTGA-AAAGGTTGCCACC
** * * *
13602 AACTTTTATAGACTTTGAAAAGGTTGCCACC
1 AACTCGTGTGGATTTTGAAAAGGTTGCCACC
* *
13633 AACTTGTGT-GACGTTTTGAAAATGTTG
1 AACTCGTGTGGA--TTTTGAAAAGGTTG
13660 GACTCTGACT
Statistics
Matches: 1764, Mismatches: 508, Indels: 245
0.70 0.20 0.10
Matches are distributed among these distances:
29 16 0.01
30 59 0.03
31 586 0.33
32 969 0.55
33 33 0.02
34 5 0.00
35 1 0.00
36 1 0.00
37 2 0.00
38 5 0.00
39 18 0.01
40 63 0.04
41 6 0.00
ACGTcount: A:0.28, C:0.19, G:0.21, T:0.31
Consensus pattern (31 bp):
AACTCGTGTGGATTTTGAAAAGGTTGCCACC
Found at i:11779 original size:102 final size:103
Alignment explanation
Indices: 11597--11788 Score: 244
Period size: 102 Copynumber: 1.9 Consensus size: 103
11587 TCGGGTGGGC
* * *
11597 TTTGAAAAGGTTGGCACCAACTATTATAGAATTTTAAAAAGGTTACCACTAACTCGTGTGGACTT
1 TTTGAAAAGGTTGCCACCAACTATTATAGAATTTTAAAAAGGTTACCACTAACTCCTATGGACTT
* *
11662 TGAAATGGTTACCACCAATTCGTGTGGGCTTTTAGGCT
66 TGAAATAGTTACCACCAACTCGTGTGGGCTTTTAGGCT
* * * * * * *
11700 TTTGAAAAGGTTGCCACCAACTCTTGTGGACTTTT-GAAAGGTTGCCA-TCAATTCCTATGGACT
1 TTTGAAAAGGTTGCCACCAACTATTATAGAATTTTAAAAAGGTTACCACT-AACTCCTATGGACT
*
11763 TTGAAATAGTTGCCACCAACTCGTGT
65 TTGAAATAGTTACCACCAACTCGTGT
11789 AGAGTTTTGA
Statistics
Matches: 75, Mismatches: 13, Indels: 3
0.82 0.14 0.03
Matches are distributed among these distances:
101 1 0.01
102 44 0.59
103 30 0.40
ACGTcount: A:0.28, C:0.19, G:0.21, T:0.33
Consensus pattern (103 bp):
TTTGAAAAGGTTGCCACCAACTATTATAGAATTTTAAAAAGGTTACCACTAACTCCTATGGACTT
TGAAATAGTTACCACCAACTCGTGTGGGCTTTTAGGCT
Found at i:12046 original size:156 final size:158
Alignment explanation
Indices: 11794--12128 Score: 374
Period size: 156 Copynumber: 2.1 Consensus size: 158
11784 CGTGTAGAGT
* * * * * * *
11794 TTTGAAAAAGTTGCTACCAACTCGTGTGGGTTTTTGAAAAGGTTGCCACTAACTTGTGTGGACTT
1 TTTGAAAAGGTTGCTACCAACACGTGCGGGATTTTGAAAAGGTTACCACTAACTCGTGGGGACTT
* ** * * * *
11859 TTTAAATGGTTGCCAACAACTCACGTGGGCTTT-GAAAAGGTTGC-ACCAACTCGTGTC-GA-TT
66 TTGAAAAAGTTACCAACAACTCAAGTGGGCTTTCGAAAA-ATTGCTAACAACTCGTG-CAGACTT
*
11920 TGAAAAGGTTACGACAAACTCATGTAGGCC
129 TGAAAAGGTTACGACAAACTCATGTAAGCC
11950 TTTGAAAAGGTTGCTACCAACACGTGCGGGATTTTGAAAAGGTTACCACTAACTCGTGCGGGA-T
1 TTTGAAAAGGTTGCTACCAACACGTGCGGGATTTTGAAAAGGTTACCACTAACTCGTG-GGGACT
** * *
12014 TTTGAAAAAGTTATTACCAACTCAAGTGGGCTTTCGAAAAATTGCTAACAACTTGTGCAGACTTT
65 TTTGAAAAAGTTACCAACAACTCAAGTGGGCTTTCGAAAAATTGCTAACAACTCGTGCAGACTTT
** * * *
12079 GAAAAGGTTATTACCAACTCGTGTAAGCT
130 GAAAAGGTTACGACAAACTCATGTAAGCC
* *
12108 TTTGAAAAGGTTACCACCAAC
1 TTTGAAAAGGTTGCTACCAAC
12129 TCTTGTAGAC
Statistics
Matches: 148, Mismatches: 26, Indels: 8
0.81 0.14 0.04
Matches are distributed among these distances:
156 84 0.57
157 19 0.13
158 45 0.30
ACGTcount: A:0.30, C:0.19, G:0.22, T:0.29
Consensus pattern (158 bp):
TTTGAAAAGGTTGCTACCAACACGTGCGGGATTTTGAAAAGGTTACCACTAACTCGTGGGGACTT
TTGAAAAAGTTACCAACAACTCAAGTGGGCTTTCGAAAAATTGCTAACAACTCGTGCAGACTTTG
AAAAGGTTACGACAAACTCATGTAAGCC
Found at i:12293 original size:102 final size:103
Alignment explanation
Indices: 12102--12307 Score: 256
Period size: 102 Copynumber: 2.0 Consensus size: 103
12092 CCAACTCGTG
* * *
12102 TAAGCTTTTGAAAAGGTTACCACCAACTCTTGTAGACTTTTCAAAATATTACCACCAACTCGTAT
1 TAAGCATTTGAAAAGGTTACCACCAACTCTTATAGACTTTTCAAAATATTACCAACAACTCGTAT
* * *
12167 GGACATTAAAATAGTTGCTTCCAACTCTTGTGGGCTTT
66 GGACATTAAAATAGTTGCTACCAACTCGTGTGAGCTTT
* * * * *
12205 TAAGCATTTGAAAAGGTTGCCA-CAACTCTTATAGACTTTTGAAAATATTGCCAACAACTTGTGT
1 TAAGCATTTGAAAAGGTTACCACCAACTCTTATAGACTTTTCAAAATATTACCAACAACTCGTAT
* *
12269 GGACTTTGAAAA-GGTTG-TCACCAACTCGTGTGAGCTTT
66 GGACATT-AAAATAGTTGCT-ACCAACTCGTGTGAGCTTT
12307 T
1 T
12308 GGAAAGGTTG
Statistics
Matches: 88, Mismatches: 13, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
101 1 0.01
102 63 0.72
103 24 0.27
ACGTcount: A:0.30, C:0.19, G:0.17, T:0.33
Consensus pattern (103 bp):
TAAGCATTTGAAAAGGTTACCACCAACTCTTATAGACTTTTCAAAATATTACCAACAACTCGTAT
GGACATTAAAATAGTTGCTACCAACTCGTGTGAGCTTT
Found at i:12813 original size:94 final size:93
Alignment explanation
Indices: 12715--12888 Score: 224
Period size: 94 Copynumber: 1.8 Consensus size: 93
12705 GCCACCAATC
* * * * *
12715 CGTGTGGACTTTGACTATGGTGCCGCCAACTTGCA-TAAACTTTAAAAAGGTTACTAGCAACTCG
1 CGTGTAGACTTTGACTATGGTGCC-ACAACCT-CATTAAACTTTAAAAAGGTTACCACCAACTCG
12779 TGTGGGCTTTTGAAAATATTACACCCAACT
64 TGTGGGCTTTTGAAAATATTACACCCAACT
* * ** *
12809 CGTGTAGACTTTGACTGTGGTGCCACAACCTCATTTGAACTTTGTAAAGGTTGCCACCAACTCGT
1 CGTGTAGACTTTGACTATGGTGCCACAACCTCA-TTAAACTTTAAAAAGGTTACCACCAACTCGT
12874 GTGGGCTTTTGAAAA
65 GTGGGCTTTTGAAAA
12889 AGTTTCCAAT
Statistics
Matches: 68, Mismatches: 10, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
92 2 0.03
93 5 0.07
94 61 0.90
ACGTcount: A:0.26, C:0.21, G:0.22, T:0.30
Consensus pattern (93 bp):
CGTGTAGACTTTGACTATGGTGCCACAACCTCATTAAACTTTAAAAAGGTTACCACCAACTCGTG
TGGGCTTTTGAAAATATTACACCCAACT
Found at i:12869 original size:125 final size:124
Alignment explanation
Indices: 12634--12870 Score: 273
Period size: 125 Copynumber: 1.9 Consensus size: 124
12624 TTTGCTTTTG
* * * * *
12634 AAAAGGTTGCTACCAACTTATGTGGGCTTTTGAAAATGTTGCCACCAACTCGTGTGGACTTTGAC
1 AAAAGGTTACTACCAACTCATGTGGGCTTTTGAAAATATTACCACCAACTCGTGTAGACTTTGAC
* * * * * * *
12699 TTTGTTGCCACCAATCCGTGTGGACTTTGACTATGGTGCCGCCAACTTGCATAAACTTTA
66 TGTGGTGCCACCAACCCATGTGAACTTTGAC-AAGGTGCCACCAACTTGCATAAACTTTA
* *
12759 AAAAGGTTACTAGCAACTCGTGTGGGCTTTTGAAAATATTA-CACCCAACTCGTGTAGACTTTGA
1 AAAAGGTTACTACCAACTCATGTGGGCTTTTGAAAATATTACCA-CCAACTCGTGTAGACTTTGA
*
12823 CTGTGGTGCCA-CAACCTCATTTGAACTTTGTA-AAGGTTGCCACCAACT
65 CTGTGGTGCCACCAACC-CATGTGAACTTTG-ACAAGG-TGCCACCAACT
12871 CGTGTGGGCT
Statistics
Matches: 93, Mismatches: 15, Indels: 8
0.80 0.13 0.07
Matches are distributed among these distances:
124 9 0.10
125 83 0.89
126 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.21, T:0.31
Consensus pattern (124 bp):
AAAAGGTTACTACCAACTCATGTGGGCTTTTGAAAATATTACCACCAACTCGTGTAGACTTTGAC
TGTGGTGCCACCAACCCATGTGAACTTTGACAAGGTGCCACCAACTTGCATAAACTTTA
Found at i:13058 original size:95 final size:93
Alignment explanation
Indices: 12863--13236 Score: 256
Period size: 95 Copynumber: 3.9 Consensus size: 93
12853 TAAAGGTTGC
* * ** * * * * ** *
12863 CACCAACTCGTGTGGGCTTTTGAAAA-AGTTTCCAATAACGTGTTTGGGCTTTAAAAATCTTGCC
1 CACCAACTCGTGTAGGC-TTTGAAAAGA-TTACCACCAACTTGTGTGGGCATTGAAAAGGTTGTC
* * *
12927 ACCAACTCGTGTGGACTTTTGCAAAGG-GTAC
64 ACCAACTTGTGTGGA-TTTTGAAAAGGTGT-T
* * * *
12958 CACCAACTCGTGTATGCTATTGAAAAGATTACCACCAACTCGTGTGGGCCTTAGAAAAGGTTGTT
1 CACCAACTCGTGTAGGCT-TTGAAAAGATTACCACCAACTTGTGTGGGCATT-GAAAAGGTTGTC
*
13023 ACCAAC-TGATGTGAGATTTTGAAATGGTGTT
64 ACCAACTTG-TGTG-GATTTTGAAAAGGTGTT
* * * * * * * *
13054 -ACCAACTCGAGTAGGATTTTAAAAGGGTTGCCACCAACTTGTGTAGGCTTTTGAAAAGGTTGCC
1 CACCAACTCGTGTAGGCTTTGAAAA-GATTACCACCAACTTGTGTGGGC-ATTGAAAAGGTTGTC
* *
13118 AACAACTTGTGTGGATTTTGAAAAGGTTTT
64 ACCAACTTGTGTGGATTTTGAAAAGGTGTT
* * * ** *
13148 CACCAACCCGTGTGGGCTTTTGAAAA-AGTTTCCAATAACTTGTGTGGACATTGAAAAGGTTGTC
1 CACCAACTCGTGTAGGC-TTTGAAAAGA-TTACCACCAACTTGTGTGGGCATTGAAAAGGTTGTC
* *
13212 ACCAACACTGTG-GGTTTTTGAAAAG
64 ACCAAC-TTGTGTGGATTTTGAAAAG
13237 ATTGCTACTA
Statistics
Matches: 218, Mismatches: 48, Indels: 27
0.74 0.16 0.09
Matches are distributed among these distances:
94 52 0.24
95 124 0.57
96 38 0.17
97 4 0.02
ACGTcount: A:0.28, C:0.18, G:0.23, T:0.30
Consensus pattern (93 bp):
CACCAACTCGTGTAGGCTTTGAAAAGATTACCACCAACTTGTGTGGGCATTGAAAAGGTTGTCAC
CAACTTGTGTGGATTTTGAAAAGGTGTT
Found at i:13793 original size:32 final size:32
Alignment explanation
Indices: 13694--14501 Score: 384
Period size: 32 Copynumber: 25.7 Consensus size: 32
13684 TCCTGTGAAC
* *
13694 TTTGAAAAGGTTACCA-CAACTCATGTGGGCA
1 TTTGAAAAGGTTACCACCAACTCGTGTGGGCT
* * * * ***
13725 TTTAAAAAGGTTGCCACAAACTCGTGCGAATT
1 TTTGAAAAGGTTACCACCAACTCGTGTGGGCT
* * *
13757 TTTGAAAATGTTACCACCAACTCGTATGGGCC
1 TTTGAAAAGGTTACCACCAACTCGTGTGGGCT
* * * * *
13789 TTTGAAAAGGTTGCTACCAACTCGTATAGGAT
1 TTTGAAAAGGTTACCACCAACTCGTGTGGGCT
* * *
13821 TTTGAAAAGGTTGCCCCCAACTCGTGTGGGTT
1 TTTGAAAAGGTTACCACCAACTCGTGTGGGCT
* *
13853 TTTAAAAAGGTTATCACCAACTCGTGTGGGCT
1 TTTGAAAAGGTTACCACCAACTCGTGTGGGCT
* * * * * ***
13885 TTTTAAAAGATTGCTAACAACTCACATGGGC-
1 TTTGAAAAGGTTACCACCAACTCGTGTGGGCT
* * * *
13916 TTTGAAAAGATTACCACCAACTTGTGCGGACT
1 TTTGAAAAGGTTACCACCAACTCGTGTGGGCT
** * *
13948 TTTGAAAAGGTTACCAAAAACTCGTGTAGGCC
1 TTTGAAAAGGTTACCACCAACTCGTGTGGGCT
* *
13980 TTTGAAAAGG-TAGCTACCAA-T-GTGTGGGAT
1 TTTGAAAAGGTTA-CCACCAACTCGTGTGGGCT
* ** *
14010 TTTGAAAAGGTTACTACCAACTCGTGCAGGAT
1 TTTGAAAAGGTTACCACCAACTCGTGTGGGCT
*
14042 TTTGACAAAGGTGT--CACCAACTCATGTGGGCT
1 TTTGA-AAAGGT-TACCACCAACTCGTGTGGGCT
* * * * * * *
14074 TCTCAAAAGGTTGCCA-AAACTTGTGTAGAC-
1 TTTGAAAAGGTTACCACCAACTCGTGTGGGCT
*** *
14104 TTTGAAAAGGTTGTTACCAACTCGTGT-GGCC
1 TTTGAAAAGGTTACCACCAACTCGTGTGGGCT
* * *
14135 TTTGAAAAGGGTTACCACCAACTCTTGTAGACT
1 TTTGAAAA-GGTTACCACCAACTCGTGTGGGCT
* * * *
14168 TTTCG-AAAGGTT-GC-GCAACTCATAT--GCAT
1 TTT-GAAAAGGTTACCACCAACTCGTGTGGGC-T
* **
14197 ATTGAAATA-GTTACTTCCAACTCTTGTGGGCTTTTGGGCT
1 TTTGAAA-AGGTTACCACCAACTC--GT--G----TGGGCT
* * * * *
14237 TTTGAAAAGGTTGCCACCGACTCTTGTAGACT
1 TTTGAAAAGGTTACCACCAACTCGTGTGGGCT
* * *
14269 TTTG-AAAGGTTGCCATCAA--------GACT
1 TTTGAAAAGGTTACCACCAACTCGTGTGGGCT
* * *
14292 TTTGAAATGGTTGCCACTAACTCGTGTGGGCT
1 TTTGAAAAGGTTACCACCAACTCGTGTGGGCT
* * *
14324 TTTGAAATGGTTACCACCAACACGTGTAGGCT
1 TTTGAAAAGGTTACCACCAACTCGTGTGGGCT
* * ** * *
14356 TTTGGAAAGATTATTACCAACTCGTGTAGAC-
1 TTTGAAAAGGTTACCACCAACTCGTGTGGGCT
* * ** **
14387 TTTGACTATGG-TACCATAAACTC--GTGAAC-
1 TTTGA-AAAGGTTACCACCAACTCGTGTGGGCT
*
14416 TTTGAAAAGGTTACCACCAACTCGTATGGGCT
1 TTTGAAAAGGTTACCACCAACTCGTGTGGGCT
* *
14448 TTTAAAAAGGTTACCACCAACTCGTGTGGGTT
1 TTTGAAAAGGTTACCACCAACTCGTGTGGGCT
14480 TTTGTAAAA-GTTA-CACCAACTC
1 TTTG-AAAAGGTTACCACCAACTC
Statistics
Matches: 579, Mismatches: 152, Indels: 92
0.70 0.18 0.11
Matches are distributed among these distances:
23 8 0.01
24 12 0.02
28 5 0.01
29 27 0.05
30 47 0.08
31 116 0.20
32 320 0.55
33 19 0.03
34 2 0.00
36 1 0.00
38 1 0.00
39 2 0.00
40 17 0.03
41 2 0.00
ACGTcount: A:0.29, C:0.20, G:0.22, T:0.30
Consensus pattern (32 bp):
TTTGAAAAGGTTACCACCAACTCGTGTGGGCT
Done.