genome.fa.s1685.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1685
Parameters: 2 7 7 80 10 50 1000
Length:  116540

Tables:   1   

This is table  1  of  1  ( 75 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
21336--21385	17	2.9	16	85	11	64	82	14	0	4	0.82
23328--23473	52	2.8	52	71	4	123	23	23	15	37	1.93
23529--23690	60	2.7	60	73	2	155	25	24	13	36	1.92
23636--24333	52	13.1	50	69	15	230	24	23	14	37	1.92
24063--24266	104	2.0	104	86	1	284	22	24	17	35	1.95
24211--24371	61	2.6	61	81	8	177	22	22	14	39	1.91
24996--25045	21	2.4	21	96	0	91	46	10	14	30	1.77
25053--25078	13	2.0	13	100	0	52	38	15	15	30	1.88
25102--25156	20	2.8	20	97	2	103	41	14	9	34	1.77
25215--25269	20	2.8	20	100	0	110	32	18	10	38	1.85
27578--27768	95	2.0	97	82	5	235	29	19	12	38	1.89
27567--27803	95	2.5	95	79	3	233	28	22	12	36	1.90
32389--32712	166	2.0	166	86	2	463	41	14	11	33	1.82
35858--35890	9	3.7	9	95	0	57	51	3	21	24	1.62
39892--40130	121	2.0	121	94	0	424	35	16	16	31	1.91
41448--41504	24	2.4	24	80	13	64	33	3	1	61	1.23
41463--41563	24	4.3	23	71	14	73	27	4	6	60	1.43
41857--42061	68	3.0	68	92	0	347	33	20	11	35	1.88
45484--45529	23	2.0	22	84	12	58	30	0	4	65	1.12
45489--45540	17	2.9	18	77	8	52	36	0	3	59	1.16
51881--51920	21	2.0	21	90	5	64	40	7	25	27	1.82
52939--52992	20	2.6	21	82	11	76	29	22	9	38	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55521--55899	155	2.4	156	80	1	420	37	20	17	24	1.93
58097--58536	164	2.6	164	80	10	491	52	5	10	31	1.59
62994--63307	86	3.6	86	78	5	303	34	16	12	36	1.86
66592--66645	3	18.0	3	100	0	108	66	0	0	33	0.92
71008--71056	20	2.4	21	89	3	73	42	10	14	32	1.79
71116--71170	20	2.8	20	88	0	83	32	16	10	40	1.83
72076--72805	363	2.0	363	97	0	1388	26	21	11	40	1.87
77455--77507	20	2.6	21	82	8	65	37	16	16	28	1.91
77557--77582	13	2.0	13	100	0	52	30	15	15	38	1.88
77537--77604	33	2.1	33	86	8	95	36	14	14	33	1.87
84214--84254	20	2.0	22	85	9	59	19	48	26	4	1.69
85608--85651	24	1.9	24	86	9	65	31	0	27	40	1.56
86163--86219	20	2.8	20	97	0	105	35	22	12	29	1.91
86229--86253	13	1.9	13	100	0	50	32	16	16	36	1.90
86208--86271	33	1.9	33	87	6	94	37	18	14	29	1.90
86354--86379	13	2.0	13	100	0	52	30	15	15	38	1.88
86334--86401	33	2.1	33	86	8	95	38	16	13	32	1.87
87814--88103	49	6.0	49	81	6	340	25	25	16	32	1.96
87811--88102	98	3.0	97	90	5	423	26	26	16	31	1.96
87967--88051	43	2.0	43	90	0	134	24	24	18	31	1.98
87918--88104	95	2.0	93	93	4	322	25	24	17	33	1.96
88013--88141	52	2.4	52	82	6	143	25	24	15	34	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
88949--89015	33	2.0	33	88	0	98	34	11	13	40	1.81
88969--88993	13	1.9	13	100	0	50	36	16	16	32	1.90
89056--89080	13	1.9	13	100	0	50	32	16	16	36	1.90
89089--89208	52	2.3	52	95	0	213	35	19	17	28	1.94
95032--95090	20	2.8	20	84	5	73	37	10	13	38	1.79
95760--95830	16	4.4	16	80	3	54	40	15	8	35	1.78
97772--97852	41	2.0	40	92	2	135	2	29	6	61	1.33
98827--98852	12	2.2	12	100	0	52	34	23	7	34	1.83
99800--99963	82	2.0	82	86	2	231	42	19	9	28	1.82
102222--102274	20	2.6	21	78	6	63	33	11	20	33	1.88
103424--103458	12	2.9	12	100	0	70	51	22	8	17	1.72
108208--108619	79	5.2	78	80	7	431	27	23	14	34	1.93
108227--108619	157	2.5	157	83	5	481	27	23	13	35	1.93
112933--112977	21	2.2	21	84	11	58	73	13	11	2	1.19
112932--112978	20	2.2	22	78	17	55	74	12	10	2	1.16
114361--114492	29	4.4	29	82	7	115	23	26	12	37	1.91
114369--114438	30	2.4	29	84	11	90	25	20	12	41	1.88
114361--114492	59	2.2	60	81	4	142	23	26	12	37	1.91
114559--114746	78	2.3	83	81	8	217	19	30	13	37	1.90
114637--114746	43	2.7	40	76	13	107	18	32	13	35	1.90
114608--114690	37	2.3	36	85	6	105	18	31	12	38	1.87
114559--114746	41	4.6	42	73	16	137	19	30	13	37	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
114554--115201	293	2.2	283	82	7	752	20	26	12	40	1.88
114807--115559	83	9.1	82	71	9	395	20	24	12	42	1.87
115185--115559	162	2.3	165	82	4	443	20	24	12	42	1.87
115390--115530	41	3.5	39	76	4	122	23	23	11	41	1.86
115828--115935	30	3.5	31	79	6	103	31	28	18	21	1.97
115807--116006	31	6.4	31	73	10	127	29	27	21	21	1.99
116093--116479	31	12.5	31	75	0	144	29	26	23	20	1.99
116184--116479	62	4.8	62	73	5	215	29	26	23	20	1.99
116173--116494	93	3.5	93	76	0	295	28	25	24	21	1.99

Tables:   1

The End!