genome.fa.s1690.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1690
Parameters: 2 7 7 80 10 50 1000
Length:  98672

Tables:   1   

This is table  1  of  1  ( 80 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1551--1598	25	1.9	25	83	8	62	50	4	0	45	1.21
2127--2163	3	12.3	3	100	0	74	67	0	0	32	0.91
2870--2919	24	2.0	25	85	11	68	26	6	6	62	1.42
5163--5199	3	12.3	3	100	0	74	32	0	0	67	0.91
5730--5777	25	1.9	25	83	8	62	45	0	4	50	1.21
8857--8900	19	2.3	18	81	11	52	34	4	4	56	1.40
9277--9397	43	2.8	43	80	1	116	35	17	14	33	1.89
9436--9498	32	2.0	32	93	0	108	38	20	19	22	1.94
10519--10545	2	13.5	2	100	0	54	48	0	0	51	1.00
11543--11582	21	1.9	21	94	0	71	57	0	0	42	0.98
11599--11642	22	2.0	22	82	8	54	45	2	15	36	1.59
11672--11703	13	2.3	15	89	10	50	68	0	0	31	0.90
11747--11783	19	2.1	17	90	10	56	35	0	2	62	1.10
13928--14005	40	2.0	40	85	10	106	50	0	1	48	1.09
14932--14962	2	15.5	2	93	0	53	48	0	3	48	1.17
19853--19997	58	2.6	56	73	13	129	46	0	1	51	1.09
20707--20735	2	14.5	2	100	0	58	48	0	0	51	1.00
21747--21931	34	5.5	34	87	3	257	40	26	7	25	1.82
25997--26059	19	3.3	19	86	0	81	36	17	17	28	1.93
26361--26543	34	5.4	34	87	3	253	39	26	7	25	1.83
28413--28450	2	19.0	2	100	0	76	50	0	0	50	1.00
29923--29976	22	2.5	22	80	14	58	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30025--30075	17	2.9	17	80	11	50	29	0	0	70	0.87
30047--30110	11	5.7	11	78	14	60	31	1	0	67	1.00
39053--39114	10	5.6	10	76	16	52	56	0	0	43	0.99
40519--40549	6	5.3	6	92	7	55	67	0	0	32	0.91
46555--46614	5	11.8	5	76	13	52	56	0	0	43	0.99
47917--47959	2	21.5	2	100	0	86	48	0	0	51	1.00
48023--48053	6	5.3	6	92	7	55	70	0	0	29	0.87
48023--48053	11	2.7	12	95	5	55	70	0	0	29	0.87
48021--48053	17	1.9	17	93	0	57	66	0	0	33	0.92
52130--52187	16	3.5	17	70	25	61	43	0	0	56	0.99
52120--52171	27	1.9	27	84	7	70	48	0	0	51	1.00
52182--52254	31	2.3	32	83	4	85	36	1	0	61	1.05
57057--57089	2	16.5	2	100	0	66	51	0	0	48	1.00
59623--59680	30	1.9	30	86	6	82	36	10	1	51	1.46
60833--60867	2	17.5	2	100	0	70	51	0	0	48	1.00
61054--61093	20	2.1	20	86	9	57	47	0	0	52	1.00
61329--61370	19	2.2	19	83	8	50	52	0	0	47	1.00
61423--61457	17	2.1	17	89	10	54	22	0	0	77	0.78
61424--61488	23	2.7	24	83	9	71	29	0	0	70	0.87
61433--61488	12	4.6	13	83	16	68	32	0	0	67	0.91
61443--61510	25	2.8	26	81	18	76	36	0	0	63	0.95
61470--61519	25	2.0	25	84	7	66	40	2	2	56	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61984--62079	45	2.1	46	88	5	142	32	20	13	33	1.92
63797--63829	2	16.5	2	100	0	66	48	0	0	51	1.00
65399--65426	4	7.0	4	100	0	56	75	0	0	25	0.81
66909--66951	2	21.5	2	100	0	86	48	0	0	51	1.00
68086--68112	3	9.0	3	100	0	54	33	0	33	33	1.58
70219--70247	3	9.7	3	100	0	58	68	0	0	31	0.89
70273--70343	23	3.1	23	100	0	142	25	12	12	49	1.76
71201--71242	20	2.0	21	86	4	59	54	9	0	35	1.33
71628--71668	20	2.0	20	90	4	64	31	0	0	68	0.90
75908--75956	20	2.5	20	83	3	64	42	2	2	53	1.24
76769--76798	5	6.0	5	92	0	51	43	0	0	56	0.99
77225--77268	23	1.9	23	95	0	79	50	13	15	20	1.78
79864--79898	18	1.9	18	88	0	52	37	0	0	62	0.95
80150--80179	15	2.0	15	93	0	51	43	0	0	56	0.99
80265--80321	24	2.5	23	80	8	62	47	0	1	50	1.11
83207--83243	18	2.1	18	89	0	56	13	29	10	45	1.77
84561--84590	15	1.9	16	93	6	53	60	0	0	40	0.97
85485--85520	19	2.0	19	89	10	58	75	5	0	19	1.00
85900--85964	18	3.3	20	75	18	57	0	24	1	73	0.91
85911--85964	4	14.2	4	76	7	51	0	25	0	74	0.83
89364--89411	15	3.1	15	78	3	51	52	0	2	45	1.12
89371--89424	22	2.4	23	82	11	67	57	0	0	42	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
89450--89522	27	2.7	28	77	14	82	61	1	0	36	1.05
89488--89523	9	3.9	9	85	7	54	66	0	0	33	0.92
94197--94228	2	16.0	2	100	0	64	50	0	0	50	1.00
95099--95158	18	3.3	18	73	13	68	56	1	0	41	1.09
95074--95166	37	2.5	37	98	1	177	58	2	0	39	1.10
95074--95166	13	7.4	13	69	27	67	58	2	0	39	1.10
95090--95150	19	3.3	19	73	13	72	54	3	0	42	1.17
95123--95171	24	2.0	24	88	7	73	55	2	0	42	1.11
95119--95217	33	3.1	31	77	11	76	46	2	0	51	1.12
95174--95226	22	2.3	24	75	18	60	37	0	0	62	0.96
95269--95310	22	1.9	22	95	0	75	35	7	14	42	1.73
95269--95322	22	2.4	22	87	3	72	37	7	12	42	1.72
95853--95915	22	2.6	25	73	21	71	65	0	0	34	0.93
95858--95925	18	3.8	18	73	22	63	64	0	0	35	0.94

Tables:   1

The End!