genome.fa.s1693.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1693
Parameters: 2 7 7 80 10 50 1000
Length:  64007

Tables:   1   

This is table  1  of  1  ( 54 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10470--10559	43	2.1	43	95	0	162	25	24	18	31	1.98
10513--10612	52	1.9	52	89	0	155	25	23	16	36	1.94
11495--11519	13	1.9	13	100	0	50	36	16	16	32	1.90
11475--11541	33	2.0	33	85	0	89	34	11	13	40	1.81
11582--11606	13	1.9	13	100	0	50	32	16	16	36	1.90
11595--11743	52	2.9	51	91	4	244	32	19	17	30	1.95
17790--17838	6	8.0	6	78	13	55	85	14	0	0	0.59
17793--17852	10	5.9	10	82	7	68	85	13	1	0	0.69
17793--17852	11	5.8	10	84	9	68	85	13	1	0	0.69
19083--20176	57	18.9	57	83	6	1280	30	29	15	24	1.96
19083--20176	29	37.9	29	84	6	1305	30	29	15	24	1.96
20731--20808	20	3.9	20	83	6	104	32	14	12	41	1.83
24234--24304	36	2.0	36	94	0	124	35	16	1	46	1.56
24791--24878	31	3.0	28	74	22	74	46	0	2	51	1.13
24833--24885	12	3.7	15	72	27	53	49	0	0	50	1.00
24839--24865	12	2.2	12	100	0	54	48	0	0	51	1.00
24833--24889	14	4.1	14	76	19	50	49	0	0	50	1.00
25405--25487	18	4.4	19	66	20	57	54	0	0	45	0.99
25440--25498	19	3.3	18	79	6	66	57	0	0	42	0.98
26298--26342	22	2.0	22	83	8	56	60	4	0	35	1.17
26998--27022	2	12.5	2	100	0	50	48	0	0	52	1.00
27661--27695	15	2.3	15	85	0	52	57	2	0	40	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28111--28165	10	5.5	10	79	14	51	50	0	3	45	1.19
28137--28164	2	14.0	2	100	0	56	50	0	0	50	1.00
28796--28823	3	9.3	3	100	0	56	67	0	0	32	0.91
29330--29439	9	13.7	9	63	24	50	44	0	0	55	0.99
29334--29382	25	2.0	25	87	0	71	48	0	0	51	1.00
29327--29438	16	7.5	15	67	22	60	44	0	0	55	0.99
29360--29468	33	3.4	31	80	12	96	41	2	0	55	1.14
29608--29653	2	23.0	2	100	0	92	0	50	0	50	1.00
35730--35761	2	16.0	2	93	0	55	50	3	0	46	1.17
36073--36153	42	1.9	42	82	0	99	40	19	9	29	1.84
37705--37770	33	2.0	33	100	0	132	24	12	18	45	1.83
39741--39802	2	31.0	2	100	0	124	50	0	0	50	1.00
40476--40524	25	1.9	26	87	4	73	67	0	0	32	0.91
40480--40526	17	2.8	16	78	9	58	72	0	0	27	0.85
48869--48902	16	2.2	15	89	5	50	76	0	5	17	0.98
50372--50433	31	2.0	31	100	0	124	35	16	12	35	1.87
56218--56275	25	2.3	26	79	8	66	37	1	5	55	1.33
56273--56340	5	14.0	5	79	11	79	57	0	0	42	0.98
56273--56340	29	2.3	29	87	5	93	57	0	0	42	0.98
56991--57062	23	3.1	22	71	16	65	55	0	0	44	0.99
57741--57797	14	4.1	15	74	14	52	61	0	0	38	0.96
57970--58002	5	6.6	5	100	0	66	39	0	0	60	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58069--58177	23	4.7	23	70	17	84	51	0	1	45	1.18
58110--58176	20	3.1	21	89	6	91	50	0	1	47	1.10
58196--58259	20	3.3	18	69	14	56	56	1	0	42	1.09
58199--58256	19	3.0	20	68	14	57	55	1	0	43	1.10
58493--58532	16	2.7	14	82	14	53	65	0	0	35	0.93
61323--61379	27	2.1	28	83	9	73	47	0	1	50	1.11
61616--61649	18	1.9	17	88	5	50	70	0	0	29	0.87
61741--61830	13	7.0	13	66	16	53	53	2	3	41	1.30
63484--63517	16	2.2	15	94	5	59	58	0	0	41	0.98
63537--63605	21	3.2	21	78	13	70	56	5	0	37	1.23

Tables:   1

The End!