genome.fa.s1697.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1697
Parameters: 2 7 7 80 10 50 1000
Length:  56381

Tables:   1   

This is table  1  of  1  ( 58 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3489--3541	27	2.0	27	92	0	88	54	16	3	24	1.59
7997--8067	24	2.9	24	75	8	63	46	22	7	23	1.76
13119--13159	11	3.5	11	81	12	55	2	19	0	78	0.87
13119--13173	24	2.3	22	77	17	56	9	20	0	70	1.13
13514--13558	22	2.0	22	82	4	54	17	17	15	48	1.81
14258--14363	45	2.2	48	81	6	128	29	21	30	18	1.97
14396--15379	32	31.8	32	88	3	1327	18	18	32	30	1.95
14485--15373	399	2.2	398	99	0	1735	18	18	32	30	1.95
15362--15828	27	17.0	27	89	2	691	29	14	33	23	1.94
15362--15828	55	8.5	55	93	2	753	29	14	33	23	1.94
15362--15828	82	5.7	81	89	3	691	29	14	33	23	1.94
16880--16907	14	2.0	14	100	0	56	0	0	7	92	0.37
16882--16906	13	1.9	13	100	0	50	0	0	4	96	0.24
23257--23287	2	15.5	2	93	0	53	51	3	0	45	1.17
23668--23708	11	3.5	11	81	12	55	2	19	0	78	0.87
23668--23722	24	2.3	22	77	17	56	9	20	0	70	1.13
24063--24107	22	2.0	22	82	4	54	17	17	15	48	1.81
34163--34205	22	2.0	22	81	9	52	44	2	2	51	1.27
35217--35242	12	2.2	12	100	0	52	19	15	7	57	1.62
35276--35330	21	2.4	23	76	11	60	41	1	0	56	1.10
35781--35848	33	2.1	33	82	0	91	42	1	5	50	1.35
35858--35932	13	5.6	13	76	7	71	49	4	0	46	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35862--35932	27	2.6	27	78	12	74	49	4	0	46	1.21
40495--40527	16	1.9	18	88	11	52	69	9	18	3	1.28
40617--40657	21	2.0	20	85	9	55	75	2	0	21	0.92
41496--41552	28	2.0	28	86	3	78	35	0	1	63	1.05
41984--42014	2	16.0	2	93	6	55	0	48	0	51	1.00
42718--42759	18	2.3	18	84	8	59	69	0	2	28	1.01
43247--43311	30	2.2	30	83	5	80	46	3	4	46	1.39
44274--44312	7	5.1	7	85	14	51	58	0	0	41	0.98
44277--44321	23	2.0	23	90	0	72	53	2	0	44	1.13
44266--44312	16	3.1	16	80	20	57	59	0	0	40	0.97
46308--46344	14	2.7	14	91	4	58	35	0	5	59	1.20
46405--46435	15	2.0	16	93	6	55	64	0	0	35	0.94
46915--46951	19	1.9	19	88	0	56	45	0	2	51	1.15
47044--47102	20	3.0	19	83	11	66	35	0	11	52	1.38
47295--47438	78	1.8	78	83	2	191	38	3	9	47	1.53
47386--47475	20	4.4	21	84	5	105	34	2	10	53	1.47
47407--47485	21	3.9	20	79	12	72	31	2	10	55	1.46
47440--47721	76	3.7	75	76	8	248	33	5	14	46	1.68
47516--47561	20	2.2	20	84	3	56	26	0	17	56	1.41
47528--47584	20	2.6	21	81	13	62	33	0	15	50	1.44
47448--47673	77	3.0	76	79	5	233	33	5	15	46	1.68
47785--47848	20	3.1	21	84	6	71	32	1	12	53	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47785--47859	20	3.7	20	82	8	66	33	2	13	50	1.55
48159--48272	57	2.0	58	84	5	151	33	1	11	53	1.47
48314--48392	30	2.5	31	78	15	90	34	2	12	50	1.54
49602--49639	19	2.0	19	89	0	58	57	0	2	39	1.12
49600--49658	22	2.6	22	89	2	82	52	0	5	42	1.23
49644--49683	13	3.1	13	96	0	71	40	5	15	40	1.68
53060--53091	2	16.0	2	100	0	64	50	0	0	50	1.00
53447--53486	2	20.0	2	100	0	80	50	0	0	50	1.00
53931--53987	26	2.1	28	81	12	66	42	0	0	57	0.98
55985--56046	28	2.2	28	83	8	83	32	1	0	66	1.02
56004--56049	12	3.8	12	82	0	65	28	0	0	71	0.86
56005--56037	17	1.9	17	93	0	57	30	0	0	69	0.88
56005--56050	19	2.5	19	86	6	60	30	0	0	69	0.89
55996--56050	24	2.3	23	90	3	83	32	1	0	65	1.03

Tables:   1

The End!