genome.fa.s1699.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1699
Parameters: 2 7 7 80 10 50 1000
Length:  127455

Tables:   1   

This is table  1  of  1  ( 99 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
404--445	9	5.0	9	80	16	54	52	0	2	45	1.13
402--444	12	3.7	12	81	3	52	51	0	2	46	1.13
3922--3991	27	2.6	27	88	0	95	25	7	24	42	1.80
10488--10522	18	1.9	18	100	0	70	37	5	5	51	1.50
10482--10524	18	2.7	15	77	19	50	34	6	9	48	1.62
12464--12499	17	2.1	18	89	5	56	55	2	0	41	1.14
17435--17658	121	1.8	122	89	1	351	30	10	11	47	1.73
20579--20705	20	5.8	20	68	23	76	39	11	16	33	1.84
20629--20706	20	3.8	20	75	12	77	37	11	15	35	1.84
21513--21579	21	3.1	21	80	6	55	34	23	4	37	1.75
21527--21579	21	2.5	21	84	6	72	32	28	3	35	1.75
24787--24839	21	2.5	21	75	6	54	33	26	1	37	1.68
25751--25787	3	12.3	3	88	0	56	67	5	0	27	1.12
25751--25787	12	3.1	12	96	0	65	67	5	0	27	1.12
30871--30930	22	2.8	21	82	12	61	51	1	0	46	1.10
32046--32111	13	5.5	11	78	18	53	22	1	1	74	0.99
32077--32132	18	2.8	20	79	20	64	23	0	5	71	1.06
33049--34139	549	2.0	548	84	3	1437	39	12	12	35	1.81
37759--37804	2	23.5	2	86	4	67	54	0	45	0	0.99
38322--38384	20	3.2	19	74	12	56	55	1	3	39	1.25
39605--39668	23	2.8	23	90	4	94	51	0	0	48	1.00
39621--39708	34	2.6	34	87	1	115	52	3	0	44	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39639--39686	17	2.9	15	77	19	51	58	2	0	39	1.10
39707--39745	20	1.9	21	89	5	62	53	2	0	43	1.14
40193--40225	16	2.0	17	88	5	50	57	0	3	39	1.14
40940--40999	27	2.2	27	88	5	86	40	1	0	58	1.08
40946--41037	35	2.7	35	85	6	109	41	1	0	57	1.06
40979--41053	29	2.5	31	81	12	86	40	1	0	58	1.06
40988--41043	23	2.5	22	77	13	60	37	0	0	62	0.95
42595--42636	21	2.0	21	86	9	59	35	4	0	59	1.19
43131--43238	56	1.9	56	94	0	189	45	16	17	20	1.86
43318--43390	38	1.9	38	83	10	96	45	2	1	50	1.24
43809--43870	18	3.4	18	81	14	65	54	0	0	45	0.99
43811--43869	20	3.1	20	80	9	61	54	0	0	45	0.99
45084--45162	19	4.4	19	73	20	71	46	0	1	51	1.08
45102--45153	15	3.2	15	73	19	50	53	0	0	46	1.00
45102--45180	34	2.3	33	89	4	113	53	0	1	45	1.08
45136--45213	24	3.1	24	80	14	77	48	0	1	50	1.09
45172--45209	20	1.9	20	89	10	60	50	0	0	50	1.00
45150--45213	24	2.6	25	83	14	78	46	0	1	51	1.10
45609--45642	7	4.7	7	85	7	50	79	0	0	20	0.73
46327--46367	14	2.8	15	75	17	50	29	0	2	68	1.03
46665--46703	21	1.9	21	89	5	62	58	0	0	41	0.98
46670--46724	17	3.5	15	76	13	58	60	1	0	38	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47002--47073	28	2.6	27	82	12	83	45	2	4	47	1.36
47404--47453	16	3.0	16	82	11	57	52	0	0	48	1.00
47423--47469	23	2.0	23	83	8	58	55	0	0	44	0.99
47418--47465	16	2.8	17	78	9	53	52	0	0	47	1.00
48237--48302	31	2.2	31	81	7	84	56	4	1	37	1.29
48594--48634	6	6.7	6	88	5	64	34	0	0	65	0.93
48600--48646	19	2.4	19	85	3	58	38	0	0	61	0.96
48831--48872	22	2.0	22	86	13	61	42	0	0	57	0.99
48851--48876	13	2.0	13	100	0	52	38	0	0	61	0.96
48886--48939	21	2.5	21	76	11	56	64	1	3	29	1.21
48892--48941	21	2.5	21	80	6	59	62	2	4	32	1.25
51716--51748	9	3.8	9	96	4	59	51	0	0	48	1.00
52181--52259	25	3.4	25	71	22	73	48	0	0	51	1.00
52193--52261	23	3.0	23	76	14	63	49	0	0	50	1.00
52416--52501	41	2.1	41	95	0	154	56	0	5	37	1.23
57025--57114	28	3.0	30	78	16	98	42	3	4	50	1.39
57594--57648	26	2.1	27	83	6	69	50	0	1	47	1.11
58913--58938	2	13.0	2	100	0	52	50	0	0	50	1.00
59348--59439	42	2.2	43	94	4	168	31	16	11	40	1.85
60404--60456	21	2.5	21	71	0	52	64	16	9	9	1.49
61271--61333	29	2.2	29	83	11	76	46	0	1	52	1.10
61823--61900	40	2.0	39	89	2	120	33	10	12	43	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61823--61893	20	3.6	19	75	7	70	33	9	12	43	1.76
70783--70892	57	1.9	57	88	0	166	22	24	22	30	1.99
73637--73685	21	2.3	21	96	3	89	40	10	12	36	1.77
76319--76405	42	2.1	42	97	0	165	28	33	10	27	1.90
76809--76870	27	2.3	28	78	13	67	45	0	0	54	0.99
76820--76883	18	3.7	18	75	25	66	43	0	0	56	0.99
76824--76918	32	2.9	34	78	13	101	38	2	1	57	1.17
76833--76883	17	3.1	17	73	26	56	41	0	0	58	0.98
76824--76896	33	2.2	33	83	11	87	38	0	1	60	1.06
78318--78383	24	2.7	24	75	11	62	39	0	0	60	0.97
80409--80454	19	2.2	21	85	11	60	63	0	2	34	1.07
88738--88771	18	1.9	17	88	5	50	50	0	0	50	1.00
89171--89204	17	2.0	17	88	0	50	52	5	0	41	1.25
90785--90820	18	1.9	19	88	5	56	33	30	2	33	1.72
96775--96819	23	2.0	22	83	8	56	37	6	0	55	1.26
96844--96883	19	2.1	19	90	9	64	37	0	10	52	1.35
99067--99092	2	13.0	2	100	0	52	50	0	0	50	1.00
99489--99524	2	18.0	2	94	0	63	47	0	2	50	1.15
99555--99583	13	2.2	13	100	0	58	65	6	0	27	1.18
100017--100045	7	4.3	7	91	8	51	55	0	0	44	0.99
101121--101187	16	4.1	17	72	24	56	55	0	0	44	0.99
101427--101474	21	2.2	22	82	14	64	39	6	0	54	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
101683--101725	22	2.0	22	86	9	61	62	0	0	37	0.95
102305--102345	20	2.0	20	95	0	73	58	2	0	39	1.11
102449--102481	17	2.0	17	88	5	50	39	9	6	45	1.61
103488--103563	38	2.1	36	85	9	100	56	5	0	38	1.22
104545--104616	31	2.2	32	80	12	83	48	5	6	38	1.53
106286--106320	13	2.7	13	91	8	54	57	0	0	42	0.99
109069--109137	30	2.4	29	78	7	79	28	11	7	52	1.64
109627--109662	14	2.8	12	88	12	54	63	0	0	36	0.94
109627--109671	13	3.5	12	82	11	54	60	2	0	37	1.09
110320--110360	21	1.9	22	85	14	59	73	0	2	24	0.96
112349--112397	19	2.6	19	90	0	71	57	4	14	24	1.55

Tables:   1

The End!