Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold17
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 1562583
ACGTcount: A:0.27, C:0.15, G:0.15, T:0.27
Warning! 255143 characters in sequence are not A, C, G, or T
File 6 of 9
Found at i:922691 original size:12 final size:12
Alignment explanation
Indices: 922674--922729 Score: 69
Period size: 12 Copynumber: 4.6 Consensus size: 12
922664 TTCTTTTCCC
922674 AAAAAAAAACAA
1 AAAAAAAAACAA
922686 AAAAAAACAA-AA
1 AAAAAAA-AACAA
922698 AAAAAACAAACAA
1 AAAAAA-AAACAA
* *
922711 ACAAACAAACAA
1 AAAAAAAAACAA
922723 AAAAAAA
1 AAAAAAA
922730 GAAAGAAAAA
Statistics
Matches: 37, Mismatches: 4, Indels: 6
0.79 0.09 0.13
Matches are distributed among these distances:
12 28 0.76
13 9 0.24
ACGTcount: A:0.88, C:0.12, G:0.00, T:0.00
Consensus pattern (12 bp):
AAAAAAAAACAA
Found at i:923749 original size:62 final size:62
Alignment explanation
Indices: 923670--923823 Score: 206
Period size: 62 Copynumber: 2.5 Consensus size: 62
923660 CAATTCTTCA
* * *
923670 AATACCTTCTTAAAGTCCACGACTCAGTGGCAATCTCTC-CTCAAAGTCCATGACTCAATGGC
1 AATATCTTTTTAAAGTCCACGACTCAGTGGCAATCTCTCTC-CAAAGTCCACGACTCAATGGC
* *
923732 AATATCTTTTTAAAGTCCACGACTCAGTGGC-ATCTCTTTCCAAAGTCCACGACTCAGTGGC
1 AATATCTTTTTAAAGTCCACGACTCAGTGGCAATCTCTCTCCAAAGTCCACGACTCAATGGC
* **
923793 -ATCTCTTTCCAAAGTCCACGACTCAGTGGCA
1 AATATCTTTTTAAAGTCCACGACTCAGTGGCA
923824 TCTTTTCTCT
Statistics
Matches: 82, Mismatches: 8, Indels: 5
0.86 0.08 0.05
Matches are distributed among these distances:
60 27 0.33
61 25 0.30
62 30 0.37
ACGTcount: A:0.27, C:0.30, G:0.16, T:0.27
Consensus pattern (62 bp):
AATATCTTTTTAAAGTCCACGACTCAGTGGCAATCTCTCTCCAAAGTCCACGACTCAATGGC
Found at i:923777 original size:30 final size:30
Alignment explanation
Indices: 923681--923830 Score: 205
Period size: 30 Copynumber: 5.0 Consensus size: 30
923671 ATACCTTCTT
*
923681 AAAGTCCACGACTCAGTGGCAATCTC-TCCTC
1 AAAGTCCACGACTCAGTGGC-ATCTCTTTC-C
* * * **
923712 AAAGTCCATGACTCAATGGCAATATCTTTTT
1 AAAGTCCACGACTCAGTGGC-ATCTCTTTCC
923743 AAAGTCCACGACTCAGTGGCATCTCTTTCC
1 AAAGTCCACGACTCAGTGGCATCTCTTTCC
923773 AAAGTCCACGACTCAGTGGCATCTCTTTCC
1 AAAGTCCACGACTCAGTGGCATCTCTTTCC
923803 AAAGTCCACGACTCAGTGGCATCT-TTTC
1 AAAGTCCACGACTCAGTGGCATCTCTTTC
923831 TCTAAAGCCC
Statistics
Matches: 107, Mismatches: 11, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
29 4 0.04
30 61 0.57
31 41 0.38
32 1 0.01
ACGTcount: A:0.26, C:0.30, G:0.16, T:0.28
Consensus pattern (30 bp):
AAAGTCCACGACTCAGTGGCATCTCTTTCC
Found at i:923878 original size:34 final size:33
Alignment explanation
Indices: 923839--924133 Score: 181
Period size: 34 Copynumber: 9.5 Consensus size: 33
923829 TCTCTAAAGC
*
923839 CCACAATTTCGTGGCACTGTTTTTCCTTCTAAGT
1 CCACAATTCCGTGGCACT-TTTTTCCTTCTAAGT
* * *
923873 CCACAACTCCGTGGCAC---CTT--TT-TAAGC
1 CCACAATTCCGTGGCACTTTTTTCCTTCTAAGT
923900 CCACAATTCCGTGGCACTCTTTTTCCTTCTAAGT
1 CCACAATTCCGTGGCACT-TTTTTCCTTCTAAGT
* * *
923934 CCACAACTCCGTGGCAC------CCTTTTAAGC
1 CCACAATTCCGTGGCACTTTTTTCCTTCTAAGT
923961 CCACAATTCCGTGGCACTCTTTTTCCTTCTAAGT
1 CCACAATTCCGTGGCACT-TTTTTCCTTCTAAGT
* * * *
923995 CCACAACTCTGTGGCAC------CCTTTTAAGC
1 CCACAATTCCGTGGCACTTTTTTCCTTCTAAGT
*
924022 CCACAACTCCGTGGCACTCTTTTTCCTTCTAAGT
1 CCACAATTCCGTGGCACT-TTTTTCCTTCTAAGT
* * * *
924056 CCATAACTCCGTGGCAC------CCTTTTAAGC
1 CCACAATTCCGTGGCACTTTTTTCCTTCTAAGT
* **
924083 CCACAACTCTATGGCACTCTTTCTT-CTTCTAAGT
1 CCACAATTCCGTGGCACT-TTT-TTCCTTCTAAGT
*
924117 CCACAACTCCGTGGCAC
1 CCACAATTCCGTGGCAC
924134 CCTTTTAAGC
Statistics
Matches: 202, Mismatches: 30, Indels: 58
0.70 0.10 0.20
Matches are distributed among these distances:
27 90 0.45
28 2 0.01
30 2 0.01
31 2 0.01
33 2 0.01
34 104 0.51
ACGTcount: A:0.20, C:0.35, G:0.13, T:0.32
Consensus pattern (33 bp):
CCACAATTCCGTGGCACTTTTTTCCTTCTAAGT
Found at i:923903 original size:27 final size:27
Alignment explanation
Indices: 923868--924163 Score: 205
Period size: 27 Copynumber: 9.9 Consensus size: 27
923858 TTTTTCCTTC
*
923868 TAAGTCCACAACTCCGTGGCACCTTTT
1 TAAGCCCACAACTCCGTGGCACCTTTT
*
923895 TAAGCCCACAATTCCGTGGCACTCTTTTTCCTT
1 TAAGCCCACAACTCCGTGGCAC-C---TT--TT
* *
923928 CTAAGTCCACAACTCCGTGGCACCCTTT
1 -TAAGCCCACAACTCCGTGGCACCTTTT
*
923956 TAAGCCCACAATTCCGTGGCACTCTTTTTCCTT
1 TAAGCCCACAACTCCGTGGCAC-C---TT--TT
* * *
923989 CTAAGTCCACAACTCTGTGGCACCCTTT
1 -TAAGCCCACAACTCCGTGGCACCTTTT
924017 TAAGCCCACAACTCCGTGGCACTCTTTTTCCTT
1 TAAGCCCACAACTCCGTGGCAC-C---TT--TT
* * *
924050 CTAAGTCCATAACTCCGTGGCACCCTTT
1 -TAAGCCCACAACTCCGTGGCACCTTTT
**
924078 TAAGCCCACAACTCTATGGCACTCTTTCTTCTT
1 TAAGCCCACAACTCCGTGGCA--C---CTT-TT
* *
924111 CTAAGTCCACAACTCCGTGGCACCCTTT
1 -TAAGCCCACAACTCCGTGGCACCTTTT
924139 TAAGCCCACAACTCCGTGGCACCTT
1 TAAGCCCACAACTCCGTGGCACCTT
924164 ACCCTTCTCA
Statistics
Matches: 212, Mismatches: 29, Indels: 56
0.71 0.10 0.19
Matches are distributed among these distances:
27 100 0.47
28 11 0.05
29 3 0.01
30 3 0.01
31 4 0.02
32 3 0.01
33 11 0.05
34 77 0.36
ACGTcount: A:0.21, C:0.36, G:0.13, T:0.30
Consensus pattern (27 bp):
TAAGCCCACAACTCCGTGGCACCTTTT
Found at i:923913 original size:61 final size:61
Alignment explanation
Indices: 923835--924160 Score: 546
Period size: 61 Copynumber: 5.3 Consensus size: 61
923825 CTTTTCTCTA
* * * *
923835 AAGCCCACAATTTCGTGGCACTGTTTTTCCTTCTAAGTCCACAACTCCGTGGCACCTTTTT
1 AAGCCCACAACTCCGTGGCACTCTTTTTCCTTCTAAGTCCACAACTCCGTGGCACCCTTTT
*
923896 AAGCCCACAATTCCGTGGCACTCTTTTTCCTTCTAAGTCCACAACTCCGTGGCACCCTTTT
1 AAGCCCACAACTCCGTGGCACTCTTTTTCCTTCTAAGTCCACAACTCCGTGGCACCCTTTT
* *
923957 AAGCCCACAATTCCGTGGCACTCTTTTTCCTTCTAAGTCCACAACTCTGTGGCACCCTTTT
1 AAGCCCACAACTCCGTGGCACTCTTTTTCCTTCTAAGTCCACAACTCCGTGGCACCCTTTT
*
924018 AAGCCCACAACTCCGTGGCACTCTTTTTCCTTCTAAGTCCATAACTCCGTGGCACCCTTTT
1 AAGCCCACAACTCCGTGGCACTCTTTTTCCTTCTAAGTCCACAACTCCGTGGCACCCTTTT
**
924079 AAGCCCACAACTCTATGGCACTCTTTCTT-CTTCTAAGTCCACAACTCCGTGGCACCCTTTT
1 AAGCCCACAACTCCGTGGCACTCTTT-TTCCTTCTAAGTCCACAACTCCGTGGCACCCTTTT
924140 AAGCCCACAACTCCGTGGCAC
1 AAGCCCACAACTCCGTGGCAC
924161 CTTACCCTTC
Statistics
Matches: 252, Mismatches: 12, Indels: 2
0.95 0.05 0.01
Matches are distributed among these distances:
61 250 0.99
62 2 0.01
ACGTcount: A:0.21, C:0.35, G:0.13, T:0.31
Consensus pattern (61 bp):
AAGCCCACAACTCCGTGGCACTCTTTTTCCTTCTAAGTCCACAACTCCGTGGCACCCTTTT
Found at i:924215 original size:33 final size:33
Alignment explanation
Indices: 924168--924392 Score: 303
Period size: 33 Copynumber: 6.8 Consensus size: 33
924158 CACCTTACCC
924168 TTCTCAAAGCCCACACAAGTCGGTGGCAACCTTT
1 TTCT-AAAGCCCACACAAGTCGGTGGCAACCTTT
**
924202 TTCTAAAGCCCACACAAGTCAATGGCAACCTTT
1 TTCTAAAGCCCACACAAGTCGGTGGCAACCTTT
*
924235 TT-TCAAAGCCCACACAAGTTGGTGGCAACCTTT
1 TTCT-AAAGCCCACACAAGTCGGTGGCAACCTTT
*
924268 TTCTAAAGCCCACACAAGTCGGTGGTAACCTTT
1 TTCTAAAGCCCACACAAGTCGGTGGCAACCTTT
* *
924301 TTCTAAAGCCCACACAAGTTGGTGGCAATCC--C
1 TTCTAAAGCCCACACAAGTCGGTGGCAA-CCTTT
* *
924333 CTCTAAAGCCCACACAAGTCGGTGGCAACCTTC
1 TTCTAAAGCCCACACAAGTCGGTGGCAACCTTT
* * *
924366 TTCAAAAGCCTACACAAGTTGGTGGCA
1 TTCTAAAGCCCACACAAGTCGGTGGCA
924393 TCTTCTTTTA
Statistics
Matches: 170, Mismatches: 16, Indels: 11
0.86 0.08 0.06
Matches are distributed among these distances:
31 2 0.01
32 27 0.16
33 134 0.79
34 7 0.04
ACGTcount: A:0.29, C:0.30, G:0.18, T:0.24
Consensus pattern (33 bp):
TTCTAAAGCCCACACAAGTCGGTGGCAACCTTT
Found at i:924512 original size:43 final size:45
Alignment explanation
Indices: 924399--924817 Score: 409
Period size: 43 Copynumber: 9.0 Consensus size: 45
924389 GGCATCTTCT
* *
924399 TTTAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTCCATC
1 TTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA---CC-TC
* * *
924448 TTTAAGTCCAATGTAGCTGGCCTTGATTCAGCACATTGGCA-C-C
1 TTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTC
* * *
924491 TTTAAGTCCAATATCGATGGCCTTTAATCAGCATATTGGCACCTTGTC
1 TTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACC---TC
* * * *
924539 TTTAAGTCCAATGTAGTTGGCCTTGAATCAGCACATTGGC-GC-C
1 TTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTC
*
924582 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTATC
1 TTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACC---TC
* *
924630 TTTAAGTCCAATGTAGCTGGCCTTGAAGCAGCATATTGGCA--TC
1 TTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTC
* * *
924673 TTTAAGTCCAATATAGCTGGCCTTAAATTAGCACATTGGCACGTCCATC
1 TTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA---CC-TC
* *
924722 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGACGCCCTTGTCATC
1 TTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTG--GCAC----C-TC
* *
924774 TTTAAGTCCAATGTCGCTGGCCTTGAATCAGCATATTGGCACCT
1 TTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCT
924818 TTTCCATCTT
Statistics
Matches: 311, Mismatches: 37, Indels: 48
0.79 0.09 0.12
Matches are distributed among these distances:
43 111 0.36
44 2 0.01
45 2 0.01
46 1 0.00
47 1 0.00
48 76 0.24
49 72 0.23
50 3 0.01
51 2 0.01
52 41 0.13
ACGTcount: A:0.25, C:0.25, G:0.19, T:0.32
Consensus pattern (45 bp):
TTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTC
Found at i:924584 original size:91 final size:91
Alignment explanation
Indices: 924399--924862 Score: 545
Period size: 91 Copynumber: 4.9 Consensus size: 91
924389 GGCATCTTCT
* *
924399 TTTAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTCCATCTTTAAGTCCAATGTAG
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCT-TATCTTTAAGTCCAATGTAG
*
924464 CTGGCCTTGATTCAGCACATTGGCACC
65 CTGGCCTTGAATCAGCACATTGGCACC
* * * *
924491 TTTAAGTCCAATATCGATGGCCTTTAATCAGCATATTGGCACCTTGTCTTTAAGTCCAATGTAGT
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTATCTTTAAGTCCAATGTAGC
*
924556 TGGCCTTGAATCAGCACATTGGCGCC
66 TGGCCTTGAATCAGCACATTGGCACC
924582 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTATCTTTAAGTCCAATGTAGC
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTATCTTTAAGTCCAATGTAGC
* * *
924647 TGGCCTTGAAGCAGCATATTGGCATC
66 TGGCCTTGAATCAGCACATTGGCACC
* * * * * * * *
924673 TTTAAGTCCAATATAGCTGGCCTTAAATTAGCACATTGGCACGTCCATCTTTAAGTCCAATATCG
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCT-TATCTTTAAGTCCAATGTAG
* *
924738 CTGGCCTTGAATCAGCATATTGACGCCCTTGTCATC
65 CTGGCCTTGAATCAGCACATT---G-----G-CACC
* * *
924774 TTTAAGTCCAATGTCGCTGGCCTTGAATCAGCATATTGGCACCTTTTCCATCTTGAA-CCCAATG
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACC--TT--ATCTTTAAGTCCAATG
*
924838 TCA-CTGGCCATGAATCAGCACATTG
62 T-AGCTGGCCTTGAATCAGCACATTG
924863 TCATTCTTCG
Statistics
Matches: 319, Mismatches: 38, Indels: 22
0.84 0.10 0.06
Matches are distributed among these distances:
91 164 0.51
92 78 0.24
95 1 0.00
100 2 0.01
101 41 0.13
103 26 0.08
104 7 0.02
ACGTcount: A:0.25, C:0.25, G:0.19, T:0.31
Consensus pattern (91 bp):
TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTATCTTTAAGTCCAATGTAGC
TGGCCTTGAATCAGCACATTGGCACC
Found at i:924675 original size:134 final size:137
Alignment explanation
Indices: 924399--924819 Score: 464
Period size: 134 Copynumber: 3.0 Consensus size: 137
924389 GGCATCTTCT
* * * * * * *
924399 TTTAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTCCATCTTTAAGTCCAATGTAG
1 TTTAAGTCCAATATAGCTGGCCTTAAATCAGCACATTGG-A-CGCCA-CTTTAAGTCCAATATCG
* * * * *
924464 CTGGCCTTGATTCAGCACATTGGCA-C----CTTTAAGTCCAATATCGATGGCCTTTAATCAGCA
63 CTGGCCTTGAATCAGCATATTGGCACCTTATCTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCA
924524 TATTGGCACCTTGTC
128 TATTGGCA-----TC
* * *
924539 TTTAAGTCCAATGTAGTTGGCCTTGAATCAGCACATTGG-CG-C-CTTTAAGTCCAATATCGCTG
1 TTTAAGTCCAATATAGCTGGCCTTAAATCAGCACATTGGACGCCACTTTAAGTCCAATATCGCTG
* *
924601 GCCTTGAATCAGCATATTGGCACCTTATCTTTAAGTCCAATGTAGCTGGCCTTGAAGCAGCATAT
66 GCCTTGAATCAGCATATTGGCACCTTATCTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCATAT
924666 TGGCATC
131 TGGCATC
*
924673 TTTAAGTCCAATATAGCTGGCCTTAAATTAGCACATTGGCACGTCCATCTTTAAGTCCAATATCG
1 TTTAAGTCCAATATAGCTGGCCTTAAATCAGCACATTGG-ACG-CCA-CTTTAAGTCCAATATCG
924738 CTGGCCTTGAATCAGCATATTGACGC-CCTTGTCATCTTTAAGTCCAATGTCGCTGGCCTTGAAT
63 CTGGCCTTGAATCAGCATATTG--GCACC-T-T-ATCTTTAAGTCCAATGTCGCTGGCCTTGAAT
*
924802 CAGCATATTGGCACC
123 CAGCATATTGGCATC
924817 TTT
1 TTT
924820 TCCATCTTGA
Statistics
Matches: 243, Mismatches: 22, Indels: 28
0.83 0.08 0.10
Matches are distributed among these distances:
134 75 0.31
135 1 0.00
136 3 0.01
137 1 0.00
138 1 0.00
139 37 0.15
140 73 0.30
141 2 0.01
142 3 0.01
143 1 0.00
144 46 0.19
ACGTcount: A:0.24, C:0.25, G:0.19, T:0.32
Consensus pattern (137 bp):
TTTAAGTCCAATATAGCTGGCCTTAAATCAGCACATTGGACGCCACTTTAAGTCCAATATCGCTG
GCCTTGAATCAGCATATTGGCACCTTATCTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCATAT
TGGCATC
Found at i:924796 original size:52 final size:51
Alignment explanation
Indices: 924669--924862 Score: 216
Period size: 52 Copynumber: 3.8 Consensus size: 51
924659 AGCATATTGG
* * * *
924669 CATCTTTAAGTCCAATATAGCTGGCCTTAAATTAGCACATTGGCAC--GTC
1 CATCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCCCTTGTC
*
924718 CATCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGACGCCCTTGT-
1 CATCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTG--GCCCTTGTC
* * *
924770 CATCTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCATATTGGCACCTTTTC
1 CATCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGC-CCTTGTC
* * * * *
924822 CATCTTGAA-CCCAATGTCACTGGCCATGAATCAGCACATTG
1 CATCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTG
924863 TCATTCTTCG
Statistics
Matches: 127, Mismatches: 12, Indels: 10
0.85 0.08 0.07
Matches are distributed among these distances:
49 38 0.30
50 2 0.02
51 36 0.28
52 49 0.39
53 2 0.02
ACGTcount: A:0.25, C:0.27, G:0.17, T:0.31
Consensus pattern (51 bp):
CATCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCCCTTGTC
Found at i:924877 original size:51 final size:51
Alignment explanation
Indices: 924781--924888 Score: 130
Period size: 51 Copynumber: 2.1 Consensus size: 51
924771 ATCTTTAAGT
* * *
924781 CCAATGTCGCTGGCCTTGAATCAGCATATTGGCACCTTTTCCATCTT-GAAC
1 CCAATGTCACTGGCCATGAATCAGCACATTGGCA-CTTTTCCATCTTCGAAC
* *
924832 CCAATGTCACTGGCCATGAATCAGCACATTGTCA-TTCTTCGCATCTTCGAGC
1 CCAATGTCACTGGCCATGAATCAGCACATTGGCACTT-TTC-CATCTTCGAAC
924884 CCAAT
1 CCAAT
924889 ATTGCTAGCC
Statistics
Matches: 49, Mismatches: 5, Indels: 5
0.83 0.08 0.08
Matches are distributed among these distances:
49 2 0.04
50 3 0.06
51 36 0.73
52 8 0.16
ACGTcount: A:0.23, C:0.31, G:0.17, T:0.30
Consensus pattern (51 bp):
CCAATGTCACTGGCCATGAATCAGCACATTGGCACTTTTCCATCTTCGAAC
Found at i:924967 original size:156 final size:156
Alignment explanation
Indices: 924769--925293 Score: 476
Period size: 156 Copynumber: 3.3 Consensus size: 156
924759 GACGCCCTTG
* * *
924769 TCATCTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCATATTGGCACCTTTTCCATCTTGAACCC
1 TCATCTTTAAGCCCAATATCGCTGGCCTTGAATCAACATATTGGCACCTTTTCCATCTTGAACCC
924834 AATGTCACTGGCCATGAATCAGCACATTGTCATTCTTCGCATCTTCGAGCCCAATATTGCTAGCC
66 AATGTCACTGGCCATGAATCAGCACATTGTCATTCTTCGCATCTTCGAGCCCAATATTGCTAGCC
924899 GCATATTGGCTCCTTTATCCTTTTTC
131 GCATATTGGCTCCTTTATCCTTTTTC
* * *
924925 TCATCTTTAAGCCCAATATCGTTGGCCATGAATCAACGTATTGGTCCCTTTATTACTCCTCTTCC
1 TCATCTTTAAGCCCAATATCGCTGGCCTTGAATCAACATATTGG---C------A--CCT-TT--
* * * * * * * **
924990 TCATTATCTTTAAGTCCAATAT-AGCTGGCCTTGAATCAGCACATTGGCA--CCTC-CATCTTTA
52 TC--CATCTTGAA-CCCAATGTCA-CTGGCCATGAATCAGCACATTGTCATTCTTCGCATCTTCG
* * * ** * ** **
925051 AGTCCAATATCGCTGGCCTTG-A-ATCAGCAT--ATTGGCGC--CATC
113 AGCCCAATATTGCTAGCC--GCATATTGGC-TCCTTTATC-CTTTTTC
* * *
925093 GTCATCTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCATATTGGCACCTTTTCCATCTTGAACC
1 -TCATCTTTAAGCCCAATATCGCTGGCCTTGAATCAACATATTGGCACCTTTTCCATCTTGAACC
*
925158 CAATGTCGCTGGCCATGAATCAGCACATTGTCATTCTTCGCATCTTCGAGCCCAATATTGCTAGC
65 CAATGTCACTGGCCATGAATCAGCACATTGTCATTCTTCGCATCTTCGAGCCCAATATTGCTAGC
925223 CGCATATTGGCTCCTTTATCCTTTTTC
130 CGCATATTGGCTCCTTTATCCTTTTTC
* * * *
925250 TCATCTTTAAGCCCAATATTGTTGGCCGTGAATCAACGTATTGG
1 TCATCTTTAAGCCCAATATCGCTGGCCTTGAATCAACATATTGG
925294 TCCCTTTATT
Statistics
Matches: 278, Mismatches: 58, Indels: 66
0.69 0.14 0.16
Matches are distributed among these distances:
152 29 0.10
153 8 0.03
154 5 0.02
155 28 0.10
156 78 0.28
157 4 0.01
158 3 0.01
159 1 0.00
160 1 0.00
165 1 0.00
166 1 0.00
167 3 0.01
168 4 0.01
169 41 0.15
170 28 0.10
171 5 0.02
172 9 0.03
173 29 0.10
ACGTcount: A:0.22, C:0.28, G:0.16, T:0.34
Consensus pattern (156 bp):
TCATCTTTAAGCCCAATATCGCTGGCCTTGAATCAACATATTGGCACCTTTTCCATCTTGAACCC
AATGTCACTGGCCATGAATCAGCACATTGTCATTCTTCGCATCTTCGAGCCCAATATTGCTAGCC
GCATATTGGCTCCTTTATCCTTTTTC
Found at i:925047 original size:325 final size:325
Alignment explanation
Indices: 924669--925364 Score: 1230
Period size: 325 Copynumber: 2.1 Consensus size: 325
924659 AGCATATTGG
* * *
924669 CATCTTTAAGTCCAATATAGCTGGCCTTAAATTAGCACATTGGCACGTCCATCTTTAAGTCCAAT
1 CATCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTCCATCTTTAAGTCCAAT
* *
924734 ATCGCTGGCCTTGAATCAGCATATTGACGCCCTTGTCATCTTTAAGTCCAATGTCGCTGGCCTTG
66 ATCGCTGGCCTTGAATCAGCATATTGACGCCATCGTCATCTTTAAGTCCAATGTCGCTGGCCTTG
924799 AATCAGCATATTGGCACCTTTTCCATCTTGAACCCAATGTCACTGGCCATGAATCAGCACATTGT
131 AATCAGCATATTGGCACCTTTTCCATCTTGAACCCAATGTCACTGGCCATGAATCAGCACATTGT
924864 CATTCTTCGCATCTTCGAGCCCAATATTGCTAGCCGCATATTGGCTCCTTTATCCTTTTTCTCAT
196 CATTCTTCGCATCTTCGAGCCCAATATTGCTAGCCGCATATTGGCTCCTTTATCCTTTTTCTCAT
924929 CTTTAAGCCCAATATCGTTGGCCATGAATCAACGTATTGGTCCCTTTATTACTCCTCTTCCTCAT
261 CTTTAAGCCCAATATCGTTGGCCATGAATCAACGTATTGGTCCCTTTATTACTCCTCTTCCTCAT
*
924994 TATCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTCCATCTTTAAGTCCAAT
1 CATCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTCCATCTTTAAGTCCAAT
*
925059 ATCGCTGGCCTTGAATCAGCATATTGGCGCCATCGTCATCTTTAAGTCCAATGTCGCTGGCCTTG
66 ATCGCTGGCCTTGAATCAGCATATTGACGCCATCGTCATCTTTAAGTCCAATGTCGCTGGCCTTG
*
925124 AATCAGCATATTGGCACCTTTTCCATCTTGAACCCAATGTCGCTGGCCATGAATCAGCACATTGT
131 AATCAGCATATTGGCACCTTTTCCATCTTGAACCCAATGTCACTGGCCATGAATCAGCACATTGT
925189 CATTCTTCGCATCTTCGAGCCCAATATTGCTAGCCGCATATTGGCTCCTTTATCCTTTTTCTCAT
196 CATTCTTCGCATCTTCGAGCCCAATATTGCTAGCCGCATATTGGCTCCTTTATCCTTTTTCTCAT
* * *
925254 CTTTAAGCCCAATATTGTTGGCCGTGAATCAACGTATTGGTCCCTTTATTACTCTTCTTCCTCAT
261 CTTTAAGCCCAATATCGTTGGCCATGAATCAACGTATTGGTCCCTTTATTACTCCTCTTCCTCAT
* * * * * * *
925319 CATCTTTAAGTCTAGTGTGGCAGGCCTTGAATCTGCACAGTGGCAC
1 CATCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCAC
925365 ATTCTAAAAC
Statistics
Matches: 352, Mismatches: 19, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
325 352 1.00
ACGTcount: A:0.22, C:0.28, G:0.16, T:0.34
Consensus pattern (325 bp):
CATCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTCCATCTTTAAGTCCAAT
ATCGCTGGCCTTGAATCAGCATATTGACGCCATCGTCATCTTTAAGTCCAATGTCGCTGGCCTTG
AATCAGCATATTGGCACCTTTTCCATCTTGAACCCAATGTCACTGGCCATGAATCAGCACATTGT
CATTCTTCGCATCTTCGAGCCCAATATTGCTAGCCGCATATTGGCTCCTTTATCCTTTTTCTCAT
CTTTAAGCCCAATATCGTTGGCCATGAATCAACGTATTGGTCCCTTTATTACTCCTCTTCCTCAT
Found at i:925182 original size:51 final size:50
Alignment explanation
Indices: 924995--925187 Score: 246
Period size: 52 Copynumber: 3.8 Consensus size: 50
924985 CTTCCTCATT
* *
924995 ATCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACC-TCC
1 ATCTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTCC
* * * *
925044 ATCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCGCCATCGTC
1 ATCTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTC--C
*
925096 ATCTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCATATTGGCACCTTTTCC
1 ATCTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACC--TTCC
* * *
925148 ATCTTGAA-CCCAATGTCGCTGGCCATGAATCAGCACATTG
1 ATCTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTG
925188 TCATTCTTCG
Statistics
Matches: 129, Mismatches: 10, Indels: 8
0.88 0.07 0.05
Matches are distributed among these distances:
49 43 0.33
50 2 0.02
51 29 0.22
52 53 0.41
54 2 0.02
ACGTcount: A:0.24, C:0.27, G:0.18, T:0.30
Consensus pattern (50 bp):
ATCTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTCC
Found at i:925202 original size:51 final size:51
Alignment explanation
Indices: 924995--925213 Score: 191
Period size: 52 Copynumber: 4.3 Consensus size: 51
924985 CTTCCTCATT
* * * * *
924995 ATCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCA--CCTCC
1 ATCTTGAAGCCCAATGTCGCTGGCCTTGAATCAGCACATTGGCATTCTTCC
* * * * *
925044 ATCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCGCCA-TCGT-C
1 ATCTTGAAGCCCAATGTCGCTGGCCTTGAATCAGCACATT-G-G-CATTCTTCC
* * *
925096 ATCTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCATATTGGCACCTT-TTCC
1 ATCTTGAAGCCCAATGTCGCTGGCCTTGAATCAGCACATTGGCA--TTCTTCC
* *
925148 ATCTTGAA-CCCAATGTCGCTGGCCATGAATCAGCACATTGTCATTCTTCGC
1 ATCTTGAAGCCCAATGTCGCTGGCCTTGAATCAGCACATTGGCATTCTTC-C
925199 ATCTTCG-AGCCCAAT
1 ATCTT-GAAGCCCAAT
925214 ATTGCTAGCC
Statistics
Matches: 148, Mismatches: 10, Indels: 21
0.83 0.06 0.12
Matches are distributed among these distances:
49 42 0.28
50 5 0.03
51 41 0.28
52 58 0.39
53 2 0.01
ACGTcount: A:0.24, C:0.28, G:0.17, T:0.31
Consensus pattern (51 bp):
ATCTTGAAGCCCAATGTCGCTGGCCTTGAATCAGCACATTGGCATTCTTCC
Found at i:926701 original size:20 final size:21
Alignment explanation
Indices: 926660--926707 Score: 64
Period size: 21 Copynumber: 2.4 Consensus size: 21
926650 TTTTAACCAA
*
926660 TTATCAAGGGGAGAAATGTTT
1 TTATCAAAGGGAGAAATGTTT
926681 TTATCAAAGGGA-AAAT-TTT
1 TTATCAAAGGGAGAAATGTTT
*
926700 TTAACAAA
1 TTATCAAA
926708 AGCCTTAATT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
19 10 0.40
20 4 0.16
21 11 0.44
ACGTcount: A:0.42, C:0.06, G:0.19, T:0.33
Consensus pattern (21 bp):
TTATCAAAGGGAGAAATGTTT
Found at i:926709 original size:20 final size:21
Alignment explanation
Indices: 926668--926707 Score: 57
Period size: 19 Copynumber: 2.0 Consensus size: 21
926658 AATTATCAAG
*
926668 GGGAGAAATGTTTTTATCAAA
1 GGGAGAAATGTTTTTAACAAA
926689 GGGA-AAAT-TTTTTAACAAA
1 GGGAGAAATGTTTTTAACAAA
926708 AGCCTTAATT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 10 0.56
20 4 0.22
21 4 0.22
ACGTcount: A:0.42, C:0.05, G:0.20, T:0.33
Consensus pattern (21 bp):
GGGAGAAATGTTTTTAACAAA
Found at i:927313 original size:19 final size:20
Alignment explanation
Indices: 927289--927339 Score: 77
Period size: 20 Copynumber: 2.6 Consensus size: 20
927279 CGATACAAGT
**
927289 TATCGATACATGTTC-ATTG
1 TATCGATACATGGACAATTG
927308 TATCGATACATGGACAATTG
1 TATCGATACATGGACAATTG
927328 TATCGATACATG
1 TATCGATACATG
927340 AAACTGGCAG
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
19 13 0.45
20 16 0.55
ACGTcount: A:0.31, C:0.16, G:0.18, T:0.35
Consensus pattern (20 bp):
TATCGATACATGGACAATTG
Found at i:927314 original size:32 final size:33
Alignment explanation
Indices: 927256--927317 Score: 92
Period size: 32 Copynumber: 1.9 Consensus size: 33
927246 CACCCAGATG
*
927256 TATCGATACATTATGCTTTGTATCGATACAAGT
1 TATCGATACATTATGCATTGTATCGATACAAGT
927289 TATCGATACATGT-T-CATTGTATCGATACA
1 TATCGATACAT-TATGCATTGTATCGATACA
927318 TGGACAATTG
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
32 14 0.52
33 12 0.44
34 1 0.04
ACGTcount: A:0.31, C:0.16, G:0.15, T:0.39
Consensus pattern (33 bp):
TATCGATACATTATGCATTGTATCGATACAAGT
Found at i:928171 original size:19 final size:19
Alignment explanation
Indices: 928147--928210 Score: 68
Period size: 19 Copynumber: 3.7 Consensus size: 19
928137 TTTCAACGAT
928147 TTGTATCGATACATAAGTG
1 TTGTATCGATACATAAGTG
928166 TTGTATCGATAC--AA---
1 TTGTATCGATACATAAGTG
*
928180 -TATATCGATACATAAGTG
1 TTGTATCGATACATAAGTG
*
928198 TTGTATAGATACA
1 TTGTATCGATACA
928211 ACGTATCGAT
Statistics
Matches: 36, Mismatches: 3, Indels: 12
0.71 0.06 0.24
Matches are distributed among these distances:
13 10 0.28
15 2 0.06
17 2 0.06
19 22 0.61
ACGTcount: A:0.36, C:0.11, G:0.17, T:0.36
Consensus pattern (19 bp):
TTGTATCGATACATAAGTG
Found at i:928186 original size:32 final size:32
Alignment explanation
Indices: 928150--928244 Score: 145
Period size: 32 Copynumber: 3.0 Consensus size: 32
928140 CAACGATTTG
928150 TATCGATACATAAGTGTTGTATCGATACAATA
1 TATCGATACATAAGTGTTGTATCGATACAATA
* **
928182 TATCGATACATAAGTGTTGTATAGATACAACG
1 TATCGATACATAAGTGTTGTATCGATACAATA
* *
928214 TATCGATACATAAGTTTTGTATCAATACAAT
1 TATCGATACATAAGTGTTGTATCGATACAAT
928245 GTATTGCTAT
Statistics
Matches: 56, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
32 56 1.00
ACGTcount: A:0.38, C:0.13, G:0.15, T:0.35
Consensus pattern (32 bp):
TATCGATACATAAGTGTTGTATCGATACAATA
Found at i:928371 original size:52 final size:52
Alignment explanation
Indices: 928328--928453 Score: 198
Period size: 52 Copynumber: 2.4 Consensus size: 52
928318 CACTGATCAT
* * *
928328 TGTATCGATACCTGTAGGCAAATTTGCCTAGATGTATCGATACACTATGAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATGAAA
* * *
928380 TGTATCGATAAATACAGGCAAATTTGCCCAGATGTATCGAGACACTATGAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATGAAA
928432 TGTATCGATACATGCAGGCAAA
1 TGTATCGATACATGCAGGCAAA
928454 ATTTCATATT
Statistics
Matches: 66, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
52 66 1.00
ACGTcount: A:0.36, C:0.17, G:0.20, T:0.27
Consensus pattern (52 bp):
TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATGAAA
Found at i:935631 original size:13 final size:13
Alignment explanation
Indices: 935613--935638 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
935603 CAAAAAATCC
935613 ATGTATCGATACA
1 ATGTATCGATACA
935626 ATGTATCGATACA
1 ATGTATCGATACA
935639 TGGAATAATG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:935714 original size:19 final size:19
Alignment explanation
Indices: 935690--935732 Score: 77
Period size: 19 Copynumber: 2.3 Consensus size: 19
935680 AGCGATACAT
935690 TGTATCGATACAAAACTTA
1 TGTATCGATACAAAACTTA
*
935709 TGTATCGATACAACACTTA
1 TGTATCGATACAAAACTTA
935728 TGTAT
1 TGTAT
935733 TCGGGCTTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 23 1.00
ACGTcount: A:0.37, C:0.16, G:0.12, T:0.35
Consensus pattern (19 bp):
TGTATCGATACAAAACTTA
Found at i:936070 original size:20 final size:20
Alignment explanation
Indices: 936045--936100 Score: 94
Period size: 20 Copynumber: 2.8 Consensus size: 20
936035 GATCAAACCC
*
936045 AAAATGTATCGATACAATAA
1 AAAATGTATCGATACAACAA
936065 AAAATGTATCGATACAACAA
1 AAAATGTATCGATACAACAA
*
936085 AAAATGTGTCGATACA
1 AAAATGTATCGATACA
936101 TTTTCTTTCC
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 34 1.00
ACGTcount: A:0.52, C:0.12, G:0.12, T:0.23
Consensus pattern (20 bp):
AAAATGTATCGATACAACAA
Found at i:939078 original size:17 final size:18
Alignment explanation
Indices: 939056--939094 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
939046 CATGTTGCCT
*
939056 TAATTTT-CTAAAAATTC
1 TAATTTTACTAAAAATAC
*
939073 TAATTTTATTAAAAATAC
1 TAATTTTACTAAAAATAC
939091 TAAT
1 TAAT
939095 AGATAAACTG
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
17 7 0.37
18 12 0.63
ACGTcount: A:0.46, C:0.08, G:0.00, T:0.46
Consensus pattern (18 bp):
TAATTTTACTAAAAATAC
Found at i:939855 original size:32 final size:32
Alignment explanation
Indices: 939819--939882 Score: 119
Period size: 32 Copynumber: 2.0 Consensus size: 32
939809 ATGGAGATCA
939819 TAGCAAATGACACAATATCAATTTGGCCAAAT
1 TAGCAAATGACACAATATCAATTTGGCCAAAT
*
939851 TAGCAAATGACATAATATCAATTTGGCCAAAT
1 TAGCAAATGACACAATATCAATTTGGCCAAAT
939883 ACATAAAGTC
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 31 1.00
ACGTcount: A:0.44, C:0.17, G:0.12, T:0.27
Consensus pattern (32 bp):
TAGCAAATGACACAATATCAATTTGGCCAAAT
Found at i:949973 original size:30 final size:31
Alignment explanation
Indices: 949901--950204 Score: 168
Period size: 29 Copynumber: 10.5 Consensus size: 31
949891 CACTAACTTG
*
949901 TGTAGGCTTTGAAAAGAGTTTCCACTGACTC
1 TGTAGGCTTTGAAAAGAGTTACCACTGACTC
*
949932 GTGTGGGCTTTGAAAAGAGTTACCACT-AGCT-
1 -TGTAGGCTTTGAAAAGAGTTACCACTGA-CTC
* * *
949963 TTTAGGCTTTGAAAAGAG-TGCCATTGACT-
1 TGTAGGCTTTGAAAAGAGTTACCACTGACTC
* * *
949992 TGTGGGCTTTGAAAATAG-TGCCACTGACT-
1 TGTAGGCTTTGAAAAGAGTTACCACTGACTC
* *
950021 TGTGGGCTTTGAAAAG-G-TGCCACTGACT-
1 TGTAGGCTTTGAAAAGAGTTACCACTGACTC
* * * *
950049 TGTGGGCTTTG-AAAG-GGTGCCCCTGACT-
1 TGTAGGCTTTGAAAAGAGTTACCACTGACTC
* * * *
950077 TGTGGGCTTTG-AAAG-GATGCCACTAACT-
1 TGTAGGCTTTGAAAAGAGTTACCACTGACTC
* * * *
950105 TATGGGCTTTGAAAAGAG-TGCCACTAACT-
1 TGTAGGCTTTGAAAAGAGTTACCACTGACTC
* * * *
950134 TATGGGCTTTG-AAAG-GGTGCCACTGACT-
1 TGTAGGCTTTGAAAAGAGTTACCACTGACTC
* *
950162 TGTGGGCTTTGAAAAGAG-TGCCACTGACT-
1 TGTAGGCTTTGAAAAGAGTTACCACTGACTC
950191 TGT-GAGCTTTGAAA
1 TGTAG-GCTTTGAAA
950205 GGGCTTTTTT
Statistics
Matches: 245, Mismatches: 18, Indels: 21
0.86 0.06 0.07
Matches are distributed among these distances:
27 6 0.02
28 93 0.38
29 100 0.41
30 19 0.08
31 1 0.00
32 26 0.11
ACGTcount: A:0.24, C:0.17, G:0.29, T:0.30
Consensus pattern (31 bp):
TGTAGGCTTTGAAAAGAGTTACCACTGACTC
Found at i:950049 original size:28 final size:28
Alignment explanation
Indices: 949882--950682 Score: 767
Period size: 28 Copynumber: 28.1 Consensus size: 28
949872 TTTGATAAAA
*
949882 AAAAGGTGCCACTAACTTGTGTAGGCTTTG
1 AAAAGGTGCCACTGACTTGTG--GGCTTTG
*
949912 AAAAGAGTTTCCACTGACTCGTGTGGGCTTTG
1 AAAAG-G-TGCCACTGACT--TGTGGGCTTTG
* * *
949944 AAAAGAGTTACCACT-AGCTTTTAGGCTTTG
1 AAAAG-G-TGCCACTGA-CTTGTGGGCTTTG
*
949974 AAAAGAGTGCCATTGACTTGTGGGCTTTG
1 AAAAG-GTGCCACTGACTTGTGGGCTTTG
*
950003 AAAATAGTGCCACTGACTTGTGGGCTTTG
1 AAAA-GGTGCCACTGACTTGTGGGCTTTG
950032 AAAAGGTGCCACTGACTTGTGGGCTTTG
1 AAAAGGTGCCACTGACTTGTGGGCTTTG
* *
950060 AAAGGGTGCCCCTGACTTGTGGGCTTTG
1 AAAAGGTGCCACTGACTTGTGGGCTTTG
* *
950088 -AAAGGATGCCACTAACTTATGGGCTTTG
1 AAAAGG-TGCCACTGACTTGTGGGCTTTG
* *
950116 AAAAGAGTGCCACTAACTTATGGGCTTTG
1 AAAAG-GTGCCACTGACTTGTGGGCTTTG
*
950145 AAAGGGTGCCACTGACTTGTGGGCTTTG
1 AAAAGGTGCCACTGACTTGTGGGCTTTG
*
950173 AAAAGAGTGCCACTGACTTGTGAGCTTTG
1 AAAAG-GTGCCACTGACTTGTGGGCTTTG
* *** * ********
950202 -AAAGG-G-C-TTTTTTTTTTTTAAAAA
1 AAAAGGTGCCACTGACTTGTGGGCTTTG
* * *
950226 AAAAGGTGCCACTAATTTGCGTGGCCTTTG
1 AAAAGGTGCCACTGACTT--GTGGGCTTTG
* *
950256 -AAAGGTGCCACTAACTTATGGGCTTTG
1 AAAAGGTGCCACTGACTTGTGGGCTTTG
* *
950283 -AAAGAATGCCACTGACTTATGGGCTTTG
1 AAAAG-GTGCCACTGACTTGTGGGCTTTG
* *
950311 AAAGGGTGCCACTGACTTGTGAGCTTTG
1 AAAAGGTGCCACTGACTTGTGGGCTTTG
* * *
950339 AAAGGGTGCCACTAACATGTGGGCTTT-
1 AAAAGGTGCCACTGACTTGTGGGCTTTG
* *
950366 AAAAGGATGCCACTAACTTATGGGCTTTG
1 AAAAGG-TGCCACTGACTTGTGGGCTTTG
* *
950395 AAAAGAATGCCACTGACTTGTGAGCTTTG
1 AAAAG-GTGCCACTGACTTGTGGGCTTTG
* * *
950424 AAAGGGTGCCACTAACTTCTGGGCTTTG
1 AAAAGGTGCCACTGACTTGTGGGCTTTG
* *
950452 AAAAGAGTGCCATTGACTTGTGGGCTTCG
1 AAAAG-GTGCCACTGACTTGTGGGCTTTG
*
950481 AAAGGGTGCCACTGACTTGCGTGGGCTTTG
1 AAAAGGTGCCACTGACTT--GTGGGCTTTG
* *
950511 AAAGGGTGCCACTCACTTGTGGGCTTTG
1 AAAAGGTGCCACTGACTTGTGGGCTTTG
*
950539 -AAAGGATGCCACTAACTTGTGGGCTTTGG
1 AAAAGG-TGCCACTGACTTGTGGGCTTT-G
*
950568 AAAAAGTGCCACTGACTTGTGGGCTTTG
1 AAAAGGTGCCACTGACTTGTGGGCTTTG
* * *
950596 AAAGGGTTCCACTGACTTGTGGGCTTTA
1 AAAAGGTGCCACTGACTTGTGGGCTTTG
* *
950624 AAAAGGTGCCAATGACTTGCGGGCTTTG
1 AAAAGGTGCCACTGACTTGTGGGCTTTG
*
950652 AAAAGAGTGCCACTGACTTGTGGGTTTTG
1 AAAAG-GTGCCACTGACTTGTGGGCTTTG
950681 AA
1 AA
950683 GAGATGAACG
Statistics
Matches: 645, Mismatches: 97, Indels: 59
0.81 0.12 0.07
Matches are distributed among these distances:
24 4 0.01
25 6 0.01
26 2 0.00
27 27 0.04
28 303 0.47
29 211 0.33
30 54 0.08
31 2 0.00
32 32 0.05
34 4 0.01
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.29
Consensus pattern (28 bp):
AAAAGGTGCCACTGACTTGTGGGCTTTG
Found at i:950054 original size:57 final size:57
Alignment explanation
Indices: 949882--950682 Score: 796
Period size: 57 Copynumber: 14.0 Consensus size: 57
949872 TTTGATAAAA
* *
949882 AAAAG-GTGCCACTAACTTGTGTAGGCTTTGAAAAGAGTTTCCACTGACTCGTGTGGGCTTTG
1 AAAAGAGTGCCACTGACTTGTG--GGCTTTGAAAAG-G-TGCCACTGACT--TGTGGGCTTTG
* * * *
949944 AAAAGAGTTACCACT-AGCTTTTAGGCTTTGAAAAGAGTGCCATTGACTTGTGGGCTTTG
1 AAAAGAG-TGCCACTGA-CTTGTGGGCTTTGAAAAG-GTGCCACTGACTTGTGGGCTTTG
*
950003 AAAATAGTGCCACTGACTTGTGGGCTTTGAAAAGGTGCCACTGACTTGTGGGCTTTG
1 AAAAGAGTGCCACTGACTTGTGGGCTTTGAAAAGGTGCCACTGACTTGTGGGCTTTG
* * * *
950060 -AAAGGGTGCCCCTGACTTGTGGGCTTTG-AAAGGATGCCACTAACTTATGGGCTTTG
1 AAAAGAGTGCCACTGACTTGTGGGCTTTGAAAAGG-TGCCACTGACTTGTGGGCTTTG
* * *
950116 AAAAGAGTGCCACTAACTTATGGGCTTTGAAAGGGTGCCACTGACTTGTGGGCTTTG
1 AAAAGAGTGCCACTGACTTGTGGGCTTTGAAAAGGTGCCACTGACTTGTGGGCTTTG
* * **** *
950173 AAAAGAGTGCCACTGACTTGTGAGCTTTG-AAAGG-G---CT---TTTTTTTTTTTAAA
1 AAAAGAGTGCCACTGACTTGTGGGCTTTGAAAAGGTGCCACTGACTTGTGGGCTTT--G
* * * * * *
950224 AAAAAAGGTGCCACTAATTTGCGTGGCCTTTG-AAAGGTGCCACTAACTTATGGGCTTTG
1 AAAAGA-GTGCCACTGACTT--GTGGGCTTTGAAAAGGTGCCACTGACTTGTGGGCTTTG
* * * *
950283 -AAAGAATGCCACTGACTTATGGGCTTTGAAAGGGTGCCACTGACTTGTGAGCTTTG
1 AAAAGAGTGCCACTGACTTGTGGGCTTTGAAAAGGTGCCACTGACTTGTGGGCTTTG
* * * * *
950339 -AAAGGGTGCCACTAACATGTGGGCTTT-AAAAGGATGCCACTAACTTATGGGCTTTG
1 AAAAGAGTGCCACTGACTTGTGGGCTTTGAAAAGG-TGCCACTGACTTGTGGGCTTTG
* * * * *
950395 AAAAGAATGCCACTGACTTGTGAGCTTTGAAAGGGTGCCACTAACTTCTGGGCTTTG
1 AAAAGAGTGCCACTGACTTGTGGGCTTTGAAAAGGTGCCACTGACTTGTGGGCTTTG
* * *
950452 AAAAGAGTGCCATTGACTTGTGGGCTTCGAAAGGGTGCCACTGACTTGCGTGGGCTTTG
1 AAAAGAGTGCCACTGACTTGTGGGCTTTGAAAAGGTGCCACTGACTT--GTGGGCTTTG
* * *
950511 -AAAGGGTGCCACTCACTTGTGGGCTTTG-AAAGGATGCCACTAACTTGTGGGCTTTGG
1 AAAAGAGTGCCACTGACTTGTGGGCTTTGAAAAGG-TGCCACTGACTTGTGGGCTTT-G
* * *
950568 AAAA-AGTGCCACTGACTTGTGGGCTTTGAAAGGGTTCCACTGACTTGTGGGCTTTA
1 AAAAGAGTGCCACTGACTTGTGGGCTTTGAAAAGGTGCCACTGACTTGTGGGCTTTG
* * *
950624 AAAAG-GTGCCAATGACTTGCGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGTTTTG
1 AAAAGAGTGCCACTGACTTGTGGGCTTTGAAAAG-GTGCCACTGACTTGTGGGCTTTG
950681 AA
1 AA
950683 GAGATGAACG
Statistics
Matches: 615, Mismatches: 93, Indels: 67
0.79 0.12 0.09
Matches are distributed among these distances:
49 6 0.01
51 5 0.01
52 13 0.02
54 13 0.02
55 20 0.03
56 151 0.25
57 255 0.41
58 79 0.13
59 27 0.04
61 15 0.02
62 19 0.03
63 2 0.00
64 10 0.02
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.29
Consensus pattern (57 bp):
AAAAGAGTGCCACTGACTTGTGGGCTTTGAAAAGGTGCCACTGACTTGTGGGCTTTG
Found at i:950082 original size:85 final size:84
Alignment explanation
Indices: 949886--950682 Score: 766
Period size: 85 Copynumber: 9.3 Consensus size: 84
949876 ATAAAAAAAA
* * * *
949886 GGTGCCACTAACTTGTGTAGGCTTTGAAAAGAGTTTCCACTGACTCGTGTGGGCTTTGAAAAGAG
1 GGTGCCACTGACTTGTG--GGCTTTG-AAAG-GGTGCCACTAACT--TGTGGGCTTTGAAAAG-G
* * *
949951 TTACCACT-AGCTTTTAGGCTTTGAAAAG
59 -TGCCACTGA-CTTGTGGGCTTTG-AAAG
* * ** *
949979 AGTGCCATTGACTTGTGGGCTTTGAAAATAGTGCCACTGACTTGTGGGCTTTGAAAAGGTGCCAC
1 GGTGCCACTGACTTGTGGGCTTTG-AAAGGGTGCCACTAACTTGTGGGCTTTGAAAAGGTGCCAC
950044 TGACTTGTGGGCTTTGAAAG
65 TGACTTGTGGGCTTTGAAAG
* * *
950064 GGTGCCCCTGACTTGTGGGCTTTGAAAGGATGCCACTAACTTATGGGCTTTGAAAAGAGTGCCAC
1 GGTGCCACTGACTTGTGGGCTTTGAAAGGGTGCCACTAACTTGTGGGCTTTGAAAAG-GTGCCAC
* *
950129 TAACTTATGGGCTTTGAAAG
65 TGACTTGTGGGCTTTGAAAG
* * * *
950149 GGTGCCACTGACTTGTGGGCTTTGAAAAGAGTGCCACTGACTTGTGAGCTTTG-AAAGG-G-C-T
1 GGTGCCACTGACTTGTGGGCTTTG-AAAGGGTGCCACTAACTTGTGGGCTTTGAAAAGGTGCCAC
*** * ******** *
950210 TTTTTTTTTTTAAAAAAAAA
65 TGACTTGTGGGCTTTGAAAG
* * * * *
950230 GGTGCCACTAATTTGCGTGGCCTTTGAAA-GGTGCCACTAACTTATGGGCTTTG-AAAGAATGCC
1 GGTGCCACTGACTT--GTGGGCTTTGAAAGGGTGCCACTAACTTGTGGGCTTTGAAAAG-GTGCC
*
950293 ACTGACTTATGGGCTTTGAAAG
63 ACTGACTTGTGGGCTTTGAAAG
* *
950315 GGTGCCACTGACTTGTGAGCTTTGAAAGGGTGCCACTAACATGTGGGCTTT-AAAAGGATGCCAC
1 GGTGCCACTGACTTGTGGGCTTTGAAAGGGTGCCACTAACTTGTGGGCTTTGAAAAGG-TGCCAC
* *
950379 TAACTTATGGGCTTTGAAAAG
65 TGACTTGTGGGCTTTG-AAAG
** * * *
950400 AATGCCACTGACTTGTGAGCTTTGAAAGGGTGCCACTAACTTCTGGGCTTTGAAAAGAGTGCCAT
1 GGTGCCACTGACTTGTGGGCTTTGAAAGGGTGCCACTAACTTGTGGGCTTTGAAAAG-GTGCCAC
*
950465 TGACTTGTGGGCTTCGAAAG
65 TGACTTGTGGGCTTTGAAAG
*
950485 GGTGCCACTGACTTGCGTGGGCTTTGAAAGGGTGCCACTCACTTGTGGGCTTTG-AAAGGATGCC
1 GGTGCCACTGACTT--GTGGGCTTTGAAAGGGTGCCACTAACTTGTGGGCTTTGAAAAGG-TGCC
* *
950549 ACTAACTTGTGGGCTTTGGAAAA
63 ACTGACTTGTGGGCTTT-GAAAG
* * * * *
950572 AGTGCCACTGACTTGTGGGCTTTGAAAGGGTTCCACTGACTTGTGGGCTTTAAAAAGGTGCCAAT
1 GGTGCCACTGACTTGTGGGCTTTGAAAGGGTGCCACTAACTTGTGGGCTTTGAAAAGGTGCCACT
*
950637 GACTTGCGGGCTTTGAAAAG
66 GACTTGTGGGCTTTG-AAAG
* *
950657 AGTGCCACTGACTTGTGGGTTTTGAA
1 GGTGCCACTGACTTGTGGGCTTTGAA
950683 GAGATGAACG
Statistics
Matches: 587, Mismatches: 96, Indels: 50
0.80 0.13 0.07
Matches are distributed among these distances:
81 43 0.07
82 4 0.01
83 22 0.04
84 77 0.13
85 245 0.42
86 90 0.15
87 55 0.09
88 16 0.03
90 10 0.02
91 11 0.02
93 14 0.02
ACGTcount: A:0.24, C:0.18, G:0.28, T:0.30
Consensus pattern (84 bp):
GGTGCCACTGACTTGTGGGCTTTGAAAGGGTGCCACTAACTTGTGGGCTTTGAAAAGGTGCCACT
GACTTGTGGGCTTTGAAAG
Found at i:951945 original size:17 final size:17
Alignment explanation
Indices: 951923--951969 Score: 60
Period size: 17 Copynumber: 2.8 Consensus size: 17
951913 TATTTTTTCA
951923 TGGTTTTTTGTTTG-TTT
1 TGGTTTTTT-TTTGTTTT
*
951940 TGGTTTTTTTCTGTTTT
1 TGGTTTTTTTTTGTTTT
*
951957 TTGTTTTTTTTTG
1 TGGTTTTTTTTTG
951970 GGTATAAAGG
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
16 3 0.12
17 23 0.88
ACGTcount: A:0.00, C:0.02, G:0.19, T:0.79
Consensus pattern (17 bp):
TGGTTTTTTTTTGTTTT
Found at i:962762 original size:20 final size:21
Alignment explanation
Indices: 962727--962765 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
962717 ATAACAAAGG
962727 ATTGAATAAAACCGAAAATTA
1 ATTGAATAAAACCGAAAATTA
*
962748 ATTGAA-AATACCGAAAAT
1 ATTGAATAAAACCGAAAAT
962766 GTGTTTTATT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 11 0.65
21 6 0.35
ACGTcount: A:0.56, C:0.10, G:0.10, T:0.23
Consensus pattern (21 bp):
ATTGAATAAAACCGAAAATTA
Found at i:962995 original size:20 final size:20
Alignment explanation
Indices: 962956--962996 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
962946 AAAGGTCAAA
*
962956 ACCTTCAAATGTACCGATAC
1 ACCTTCAAATGTACCAATAC
* *
962976 ACCTTCAGATGTATCAATAC
1 ACCTTCAAATGTACCAATAC
962996 A
1 A
962997 TAATGCATAG
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.37, C:0.27, G:0.10, T:0.27
Consensus pattern (20 bp):
ACCTTCAAATGTACCAATAC
Found at i:963105 original size:19 final size:20
Alignment explanation
Indices: 963081--963132 Score: 72
Period size: 20 Copynumber: 2.6 Consensus size: 20
963071 CTTAACTGTT
963081 TGTATCGATACAT-A-CAAGA
1 TGTATCGATACATGACCAA-A
*
963100 TGTATCGATACTTGACCAAA
1 TGTATCGATACATGACCAAA
963120 TGTATCGATACAT
1 TGTATCGATACAT
963133 TGGCTTGTAA
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
19 12 0.41
20 14 0.48
21 3 0.10
ACGTcount: A:0.37, C:0.17, G:0.15, T:0.31
Consensus pattern (20 bp):
TGTATCGATACATGACCAAA
Found at i:967067 original size:79 final size:80
Alignment explanation
Indices: 966954--967105 Score: 184
Period size: 79 Copynumber: 1.9 Consensus size: 80
966944 ATATTTCCCG
* * * *
966954 ATGAGAAATTTAATATTTTGGAGATAATAACGGGGTTGGAGTGTCCCCTTGAAAATAACGGGGCT
1 ATGAGAAATTCAATATTTTGGAGATAATAACGGGGTTAGAGTATCCCCTCGAAAATAACGGGGCT
967019 GGAGTATCTCCAATT
66 GGAGTATCTCCAATT
* * **
967034 ATGAGAAA-TCAATATTTTGG-GAATAA-AGCCGGGGTTAGAGTATCCCCTCGGAGGTAACGGGG
1 ATGAGAAATTCAATATTTTGGAG-ATAATA-ACGGGGTTAGAGTATCCCCTCGAAAATAACGGGG
*
967096 TTGGAGTATC
64 CTGGAGTATC
967106 CCCGATGAAA
Statistics
Matches: 61, Mismatches: 9, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
78 2 0.03
79 51 0.84
80 8 0.13
ACGTcount: A:0.30, C:0.13, G:0.29, T:0.28
Consensus pattern (80 bp):
ATGAGAAATTCAATATTTTGGAGATAATAACGGGGTTAGAGTATCCCCTCGAAAATAACGGGGCT
GGAGTATCTCCAATT
Found at i:967271 original size:104 final size:102
Alignment explanation
Indices: 967122--967447 Score: 438
Period size: 104 Copynumber: 3.1 Consensus size: 102
967112 GAAATAACGA
* * *
967122 GGTTGGAGTATCCTCGATTATGAAAAATTGGTGTTTTTGGAAATAAAATCGGAGTTGGAGTATCC
1 GGTTGGAGTATCCCCGATTGTGAAAAATTGGTGTTTTTAGAAATAAAATCGGAGTTGGAGTATCC
*
967187 CCGATTAAAGGAAAATTGGTGTTTTGAAAATAAAACCGG
66 CCGATT-AA-GAAAATTAGTGTTTTGAAAATAAAACCGG
* * * *
967226 GGTTGGAGTATCCCCGATTGTGGAAAAATTAGTG-TTTTAGCAATAAAACCGGGGTTGGAGTATC
1 GGTTGGAGTATCCCCGATTGT-GAAAAATTGGTGTTTTTAGAAATAAAATCGGAGTTGGAGTATC
* * * * * * *
967290 CCTGATTATGAGAAATCAATATTTTGGAAATAAAGCCGG
65 CCCGATTAAGA-AAATTAGTGTTTTGAAAATAAAACCGG
*
967329 GGTTGGAGTATCCCCGATTGTGAAAAATTGGTGTTTTTTGAAAATAAAATCGGAGTTGGAGTATC
1 GGTTGGAGTATCCCCGATTGTGAAAAATTGGTGTTTTTAG-AAATAAAATCGGAGTTGGAGTATC
*
967394 CCCGATTATAGAAAATTAGTGTCTTGAAAATAAAACCGG
65 CCCGATTA-AGAAAATTAGTGTTTTGAAAATAAAACCGG
967433 GGTTGGAGTATCCCC
1 GGTTGGAGTATCCCC
967448 TCGGAGGTAA
Statistics
Matches: 189, Mismatches: 28, Indels: 10
0.83 0.12 0.04
Matches are distributed among these distances:
102 13 0.07
103 48 0.25
104 115 0.61
105 13 0.07
ACGTcount: A:0.32, C:0.12, G:0.26, T:0.30
Consensus pattern (102 bp):
GGTTGGAGTATCCCCGATTGTGAAAAATTGGTGTTTTTAGAAATAAAATCGGAGTTGGAGTATCC
CCGATTAAGAAAATTAGTGTTTTGAAAATAAAACCGG
Found at i:967442 original size:51 final size:51
Alignment explanation
Indices: 967122--967447 Score: 377
Period size: 52 Copynumber: 6.3 Consensus size: 51
967112 GAAATAACGA
* * * *
967122 GGTTGGAGTATCCTCGATTATGAAAAATTGGTGTTTTTGGAAATAAAATCGG
1 GGTTGGAGTATCCCCGATTATGAAAAATTAGTG-TTTTGAAAATAAAACCGG
* * * *
967174 AGTTGGAGTATCCCCGATTAAAGGAAAATTGGTGTTTTGAAAATAAAACCGG
1 GGTTGGAGTATCCCCGATT-ATGAAAAATTAGTGTTTTGAAAATAAAACCGG
* *
967226 GGTTGGAGTATCCCCGATTGTGGAAAAATTAGTGTTTT-AGCAATAAAACCGG
1 GGTTGGAGTATCCCCGATTAT-GAAAAATTAGTGTTTTGA-AAATAAAACCGG
* * * * * * *
967278 GGTTGGAGTATCCCTGATTATGAGAAATCAATATTTTGGAAATAAAGCCGG
1 GGTTGGAGTATCCCCGATTATGAAAAATTAGTGTTTTGAAAATAAAACCGG
* * *
967329 GGTTGGAGTATCCCCGATTGTGAAAAATTGGTGTTTTTTGAAAATAAAATCGG
1 GGTTGGAGTATCCCCGATTATGAAAAATTAGTG--TTTTGAAAATAAAACCGG
* *
967382 AGTTGGAGTATCCCCGATTAT-AGAAAATTAGTGTCTTGAAAATAAAACCGG
1 GGTTGGAGTATCCCCGATTATGA-AAAATTAGTGTTTTGAAAATAAAACCGG
967433 GGTTGGAGTATCCCC
1 GGTTGGAGTATCCCC
967448 TCGGAGGTAA
Statistics
Matches: 230, Mismatches: 37, Indels: 15
0.82 0.13 0.05
Matches are distributed among these distances:
51 79 0.34
52 96 0.42
53 55 0.24
ACGTcount: A:0.32, C:0.12, G:0.26, T:0.30
Consensus pattern (51 bp):
GGTTGGAGTATCCCCGATTATGAAAAATTAGTGTTTTGAAAATAAAACCGG
Found at i:969978 original size:21 final size:21
Alignment explanation
Indices: 969952--970008 Score: 89
Period size: 21 Copynumber: 2.8 Consensus size: 21
969942 GTAAACTTCC
969952 TAGATGTATCGATACAAAGAA
1 TAGATGTATCGATACAAAGAA
*
969973 TAGATGTATCGATACACAGAA
1 TAGATGTATCGATACAAAGAA
*
969994 -AAATGTATCGATACA
1 TAGATGTATCGATACA
970009 TTTCTTTGGC
Statistics
Matches: 34, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
20 14 0.41
21 20 0.59
ACGTcount: A:0.46, C:0.12, G:0.18, T:0.25
Consensus pattern (21 bp):
TAGATGTATCGATACAAAGAA
Found at i:970073 original size:32 final size:32
Alignment explanation
Indices: 970032--970102 Score: 117
Period size: 32 Copynumber: 2.2 Consensus size: 32
970022 AGCTTCCTAG
970032 CGATACATTGTATCAATACGAA-ACTTATGTAT
1 CGATACATTGTATCAATAC-AACACTTATGTAT
*
970064 CGATACATTGTATCGATACAACACTTATGTAT
1 CGATACATTGTATCAATACAACACTTATGTAT
970096 CGATACA
1 CGATACA
970103 AATCGCTGAA
Statistics
Matches: 37, Mismatches: 1, Indels: 2
0.93 0.03 0.05
Matches are distributed among these distances:
31 2 0.05
32 35 0.95
ACGTcount: A:0.37, C:0.18, G:0.13, T:0.32
Consensus pattern (32 bp):
CGATACATTGTATCAATACAACACTTATGTAT
Found at i:970077 original size:13 final size:13
Alignment explanation
Indices: 970059--970083 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
970049 ACGAAACTTA
970059 TGTATCGATACAT
1 TGTATCGATACAT
970072 TGTATCGATACA
1 TGTATCGATACA
970084 ACACTTATGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:970894 original size:119 final size:117
Alignment explanation
Indices: 970694--970909 Score: 253
Period size: 119 Copynumber: 1.8 Consensus size: 117
970684 AGGTGTCCAC
* * * * *
970694 TTTTCAAGGACAAAGGAAAAGAGAATGAAATAGGTCTTGCTCCTTGAGGACCAAGGAAGAGAAGA
1 TTTTCAAGGACAAAGGAAAAGAGAACGAAATACGTCCTGCTCCTTGAGGACAAAAGAAGAGAAGA
970759 AAAGGAAAGTGTCCTGCT-TCTTGAGGA-TAAAGTGAAAAAGAGTACATCCCA
66 AAAGGAAAGTGTCCTGCTCT-TTGAGGACTAAAGTGAAAAAGAGTACATCCCA
* *
970810 TTTTCCAAGGACAAAGGAAAAAGGGAAACGAAATACGTCCTGCT-CTCTGAGGATAAAAGAA-AG
1 TTTT-CAAGGACAAAGG-AAAAGAG-AACGAAATACGTCCTGCTCCT-TGAGGACAAAAGAAGAG
* *
970873 AGGAAAA-TAAAGTGTATCCTGCTCTTTGAGGACTAAA
62 AAGAAAAGGAAAGTG--TCCTGCTCTTTGAGGACTAAA
970910 AAGTGCCACC
Statistics
Matches: 83, Mismatches: 9, Indels: 12
0.80 0.09 0.12
Matches are distributed among these distances:
116 4 0.05
117 18 0.22
118 16 0.19
119 40 0.48
120 5 0.06
ACGTcount: A:0.41, C:0.14, G:0.25, T:0.20
Consensus pattern (117 bp):
TTTTCAAGGACAAAGGAAAAGAGAACGAAATACGTCCTGCTCCTTGAGGACAAAAGAAGAGAAGA
AAAGGAAAGTGTCCTGCTCTTTGAGGACTAAAGTGAAAAAGAGTACATCCCA
Found at i:970973 original size:55 final size:54
Alignment explanation
Indices: 970889--971744 Score: 833
Period size: 55 Copynumber: 15.0 Consensus size: 54
970879 ATAAAGTGTA
* *
970889 TCCTGCTCTTTGAGGACTAAAAAGTGCCACCAACTCGTGTGGGCTTTGAAAGGCG
1 TCCTGCTCTTTGAGGACTGAAAA-TGCCACCAACTTGTGTGGGCTTTGAAAGGCG
* *
970944 TCCTGTTCTTTGAGGACTGGAAAATGCCACCAACTTG-GTGGGCTTTGAAAGGTG
1 TCCTGCTCTTTGAGGACT-GAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGCG
* * * * *
970998 TCTTACTCTTTGGGGACTGAAAAGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGCA
1 TCCTGCTCTTTGAGGACTGAAAA-TGCCACCAACTTGTGTGGGCTTTG-AAAG-----GCG
* * * *
971059 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGAGATTT-AAGAGGTG
1 TCCTGCTCTTTGAGGACTGAAA-ATGCCACCAACTTGTGTGGGCTTTGAA-AGGCG
*
971114 TCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGTG
1 TCCTGCTCTTTGAGGACT-GAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGCG
* *
971169 TCCTGCTCTTT-AGGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGCA
1 TCCTGCTCTTTGA-GGACTGAAA-ATGCCACCAACTTGTGTGGGCTTTG-AAAG-----GCG
* *
971230 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTT-AAGAGGTG
1 TCCTGCTCTTTGAGGACTGAAA-ATGCCACCAACTTGTGTGGGCTTTGAA-AGGCG
* *
971285 TCCTGCTCTTTGAGGACTAGAAAATGCCAGCAACTTGTGTGGGCTTTGAAAGGTG
1 TCCTGCTCTTTGAGGACT-GAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGCG
* * *
971340 TCCTGCTCTTTGGGGACTGAAAAGTGCCACTAACTTGTGTGGGCTTTGAAAAGAAAAAGCA
1 TCCTGCTCTTTGAGGACTGAAAA-TGCCACCAACTTGTGTGGGCTTTG-AAAG-----GCG
* *
971401 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGCA
1 TCCTGCTCTTTGAGGACTGAAA-ATGCCACCAACTTGTGTGGGCTTTG-AAAG-----GCG
*
971462 TCCTGCTCTTTGAGGACT-AAAAGGTGCCACCAACTTGTGTGGGCTTT-AAGAGGTG
1 TCCTGCTCTTTGAGGACTGAAAA--TGCCACCAACTTGTGTGGGCTTTGAA-AGGCG
* *
971517 TCCTGCTCTTTGAGGACTGGAAAATTCCACCAACTTGTGTGGGCTTTGAAAGGTG
1 TCCTGCTCTTTGAGGACT-GAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGCG
* * * *
971572 TCTTGCTCTTTGGGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAGGCA
1 TCCTGCTCTTTGAGGACTGAAA-ATGCCACCAACTTGTGTGGGCTTT-----G-AAAGGCG
* * *
971633 TCCTGCTCTTTGAGGACCGAAAGGTGCCACCAACTTATGTGGGCTTTGAAAGAAAAGGCG
1 TCCTGCTCTTTGAGGACTGAAA-ATGCCACCAACTTGTGTGGGCTTT----G-AAAGGCG
* ** *
971693 TTCTGCTCTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGG
1 TCCTGCTCTTTGAGGACTGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGG
971745 AAAAGGCACC
Statistics
Matches: 696, Mismatches: 59, Indels: 93
0.82 0.07 0.11
Matches are distributed among these distances:
53 5 0.01
54 61 0.09
55 293 0.42
56 30 0.04
57 4 0.01
59 29 0.04
60 40 0.06
61 233 0.33
62 1 0.00
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.27
Consensus pattern (54 bp):
TCCTGCTCTTTGAGGACTGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGCG
Found at i:971225 original size:171 final size:171
Alignment explanation
Indices: 970888--971770 Score: 1116
Period size: 171 Copynumber: 5.1 Consensus size: 171
970878 AATAAAGTGT
* * * * *
970888 ATCCTGCTCTTTGAGGACTAAAAAGTGCCACCAACTCGTGTGGGCTTTGAA-AGGCGTCCTGTTC
1 ATCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAAGAGGCGTCCTGCTC
* *
970952 TTTGAGGACTGGAAAATGCCACCAACTTG-GTGGGCTTTGAAAGGTGTCTTACTCTTTGGGGACT
66 TTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGTGTCCTGCTCTTT-GGGACT
*
971016 GAAAAGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGC
130 GAAAAGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGC
* * *
971058 ATCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGAGATTT-AAGAGGTGTCCTGCTC
1 ATCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAAGAGGCGTCCTGCTC
971122 TTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGTGTCCTGCTCTTTAGGGACT
66 TTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGTGTCCTGCTCTTT-GGGACT
*
971187 GAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGC
130 GAAAAGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGC
*
971229 ATCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTT-AAGAGGTGTCCTGCTC
1 ATCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAAGAGGCGTCCTGCTC
* *
971293 TTTGAGGACTAGAAAATGCCAGCAACTTGTGTGGGCTTTGAAAGGTGTCCTGCTCTTTGGGGACT
66 TTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGTGTCCTGCTCTTT-GGGACT
*
971358 GAAAAGTGCCACTAACTTGTGTGGGCTTTGAAAAGAAAAAGC
130 GAAAAGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGC
* *
971400 ATCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGCATCC
1 ATCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTT--AAAG---AGGCGTCC
971465 TGCTCTTTGAGGACT--AAAAGGTGCCACCAACTTGTGTGGGCTTT-AAGAGGTGTCCTGCTCTT
61 TGCTCTTTGAGGACTGGAAAA--TGCCACCAACTTGTGTGGGCTTTGAA-AGGTGTCCTGCTCTT
* *
971527 TGAGGACTGGAAAA-TTCCACCAACTTGTGTGGGCTTTG-AAAG-----GT
123 TG-GGACT-GAAAAGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGC
* * * *
971571 GTCTTGCTCTTTGGGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAGGCATCC
1 ATCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTT--AAAG---AGGCGTCC
* * * * *
971636 TGCTCTTTGAGGAC-CGAAAGGTGCCACCAACTTATGTGGGCTTTGAAAGAAAAGGCGTTCTGCT
61 TGCTCTTTGAGGACTGGAAA-ATGCCACCAACTTGTGTGGGCTTT----G-AAAGGTGTCCTGCT
* *
971700 CTTTGAGGACTG-AAGGTGCCACCAACTTGTGTGGGCTTT-AAAAGGAAAAGGC
120 CTTTG-GGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTGAAAA-GAAAAAGC
* *
971752 ACCCTACTCTTTGAGGACT
1 ATCCTGCTCTTTGAGGACT
971771 AAAAAGCGGA
Statistics
Matches: 641, Mismatches: 42, Indels: 49
0.88 0.06 0.07
Matches are distributed among these distances:
169 2 0.00
170 83 0.13
171 382 0.60
172 3 0.00
174 5 0.01
175 30 0.05
176 29 0.05
177 87 0.14
178 5 0.01
181 15 0.02
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.27
Consensus pattern (171 bp):
ATCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAAGAGGCGTCCTGCTC
TTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGTGTCCTGCTCTTTGGGACTG
AAAAGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGC
Found at i:971433 original size:232 final size:224
Alignment explanation
Indices: 970889--971740 Score: 1087
Period size: 232 Copynumber: 3.7 Consensus size: 224
970879 ATAAAGTGTA
* * * *
970889 TCCTGCTCTTTGAGGACTAAAAAGTGCCACCAACTCGTGTGGGCTTTGAAAGGCGTCCTGTTCTT
1 TCCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCATCCTGCTCTT
* ** * * *
970954 TGAGGACTGGAAA-ATGCCACCAACTTG-GTGGGCTTTGAAAG-----GTGTCTTACTCTTTGGG
66 TGAGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGAAAAAGCATCCTGCTCTTTGAG
* * * **
971012 GACTGAAAAGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGCATCCTGCTCTTTGAGGACT
130 GACTGAAAGGTGCCACCAACTTGTGTGGGCTTT---AAG---AGGTGTCCTGCTCTTTGAGGACT
* * *
971077 GAAAGGTGCCACCAACTTGTGTGAGATTT-AAGAGGTG
189 GAAA-ATGCCACCAACTTGTGTGGGCTTTGAA-AGGTG
**
971114 TCCTGCTCTTTGAGGACTGGAAAA-TGCCACCAACTTGTGTGGGCTTTGAAAGGTGTCCTGCTCT
1 TCCTGCTCTTTGAGGACT-GAAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCATCCTGCTCT
971178 TT-AGGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGCATCCTGCTCTTTG
65 TTGA-GGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTG-AAAGAAAAAGCATCCTGCTCTTTG
971242 AGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAGAGGTGTCCTGCTCTTTGAGGACTAGAA
128 AGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAGAGGTGTCCTGCTCTTTGAGGACT-GAA
*
971307 AATGCCAGCAACTTGTGTGGGCTTTGAAAGGTG
192 AATGCCACCAACTTGTGTGGGCTTTGAAAGGTG
* *
971340 TCCTGCTCTTTGGGGACTGAAAAGTGCCACTAACTTGTGTGGGCTTTGAAAAGAAAAAGCATCCT
1 TCCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTG-AAAG-----GCATCCT
971405 GCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGCATCCTGCTC
60 GCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTG-AAAGAAAAAGCATCCTGCTC
*
971470 TTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTTAAGAGGTGTCCTGCTCTTTGAGGACT
124 TTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAGAGGTGTCCTGCTCTTTGAGGACT
*
971535 GGAAAATTCCACCAACTTGTGTGGGCTTTGAAAGGTG
189 -GAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGTG
* * *
971572 TCTTGCTCTTTGGGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAGGCATCCT
1 TCCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTT-----G-AAAGGCATCCT
* * * * *
971637 GCTCTTTGAGGACCGAAAGGTGCCACCAACTTATGTGGGCTTTGAAAGAAAAGGCGTTCTGCTCT
60 GCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGAAAAAGCATCCTGCTCT
971702 TTGAGGACTG-AAGGTGCCACCAACTTGTGTGGGCTTTAA
125 TTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAA
971741 AAGGAAAAGG
Statistics
Matches: 566, Mismatches: 36, Indels: 45
0.87 0.06 0.07
Matches are distributed among these distances:
224 5 0.01
225 80 0.14
226 99 0.17
227 14 0.02
229 3 0.01
230 29 0.05
231 27 0.05
232 302 0.53
233 1 0.00
237 6 0.01
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.27
Consensus pattern (224 bp):
TCCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCATCCTGCTCTT
TGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGAAAAAGCATCCTGCTCTTTGAGG
ACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAGAGGTGTCCTGCTCTTTGAGGACTGAAAATG
CCACCAACTTGTGTGGGCTTTGAAAGGTG
Found at i:971622 original size:29 final size:30
Alignment explanation
Indices: 971481--971622 Score: 76
Period size: 28 Copynumber: 5.1 Consensus size: 30
971471 TTGAGGACTA
971481 AAAGGTG-CCACCAACTTGTGTGGGCTTT-
1 AAAGGTGTCCACCAACTTGTGTGGGCTTTG
** * * * *
971509 AAGAGGTGTCCTGC-TCTT-TGAGGAC-TGG
1 AA-AGGTGTCCACCAACTTGTGTGGGCTTTG
*
971537 AAA-AT-TCCACCAACTTGTGTGGGCTTTG
1 AAAGGTGTCCACCAACTTGTGTGGGCTTTG
*** *
971565 AAAGGTGTCTTGC-TCTT-TG-GGGAC--TG
1 AAAGGTGTCCACCAACTTGTGTGGG-CTTTG
971591 AAAGGTG-CCACCAACTTGTGTGGGCTTTG
1 AAAGGTGTCCACCAACTTGTGTGGGCTTTG
971620 AAA
1 AAA
971623 AGAAAAGGCA
Statistics
Matches: 78, Mismatches: 22, Indels: 27
0.61 0.17 0.21
Matches are distributed among these distances:
25 6 0.08
26 16 0.21
27 13 0.17
28 20 0.26
29 17 0.22
30 6 0.08
ACGTcount: A:0.22, C:0.19, G:0.30, T:0.30
Consensus pattern (30 bp):
AAAGGTGTCCACCAACTTGTGTGGGCTTTG
Found at i:972781 original size:16 final size:15
Alignment explanation
Indices: 972752--972803 Score: 50
Period size: 16 Copynumber: 3.3 Consensus size: 15
972742 CTTTTCTCTC
*
972752 TTTTTCTTTGTTTTGTT
1 TTTTTGTTT-TTTT-TT
*
972769 TTTTTGTTTTTTTTCG
1 TTTTTGTTTTTTTT-T
*
972785 CTTTTGTTTTTTTTT
1 TTTTTGTTTTTTTTT
972800 TTTT
1 TTTT
972804 GAAGAGAAGG
Statistics
Matches: 29, Mismatches: 5, Indels: 4
0.76 0.13 0.11
Matches are distributed among these distances:
15 4 0.14
16 17 0.59
17 8 0.28
ACGTcount: A:0.00, C:0.06, G:0.10, T:0.85
Consensus pattern (15 bp):
TTTTTGTTTTTTTTT
Found at i:985410 original size:52 final size:51
Alignment explanation
Indices: 985261--985792 Score: 221
Period size: 52 Copynumber: 10.1 Consensus size: 51
985251 GAAATAATGA
* *
985261 GGTTGGAGTATCCTCGATTGT-GAAAAATTGGTGTTTTTGGAAATAAAATCAG
1 GGTTGGAGTATCCCCGATTGTGGAAAAATTGGTG-TTTT-GAAATAAAATCGG
* * **
985313 AGTTGGAGTATCCCTGATTAAAGG-AAAATTGGTGTTTTGAAAATAAAATCGG
1 GGTTGGAGTATCCCCGATT-GTGGAAAAATTGGTGTTTTG-AAATAAAATCGG
* * * *
985365 GGTTAGAGTATCCCCGATTGTGGAAAAATTAGTGTTTTAGCAATAAAACCGG
1 GGTTGGAGTATCCCCGATTGTGGAAAAATTGGTGTTTT-GAAATAAAATCGG
** * * *** * **
985417 GGTTTTAGTATCCCCGATTAT-GAGAAATCAATATTTTGGAAATAAAGCCGG
1 GGTTGGAGTATCCCCGATTGTGGAAAAATTGGTGTTTT-GAAATAAAATCGG
* * ** * ** * *
985468 GGTTGGAGTATCCCC--TCGGAGGTAACGAGGTTGGAGTATCCCCGATGAT-TAA-CGG
1 GGTTGGAGTATCCCCGAT-TGTGG-AA--AAATTGGTGT-T--TTGA-AATAAAATCGG
985523 GGTTGGAGTATCCCCGATTGT-GAAAAATTGGTGTTTTTTGGAAATAAAATCGG
1 GGTTGGAGTATCCCCGATTGTGGAAAAATTGGTG--TTTT-GAAATAAAATCGG
* * * * * *
985576 AGTTGGAGTATCCCCGATTATAG-AAAATTAGTGTCTTGAAAATAAAACCGG
1 GGTTGGAGTATCCCCGATTGTGGAAAAATTGGTGTTTTG-AAATAAAATCGG
* * * ** * ** * *
985627 GGTTGAAGTATCCCC--TCGGAGGTAACGAGGTTGGAGTATCCCCGATGAT-TAA-CGG
1 GGTTGGAGTATCCCCGAT-TGTGG-AA--AAATTGGTGT-T--TTGA-AATAAAATCGG
985682 GGTTGGAGTATCCCCGATTGT-GAAAAATTGGTGTTTTTTTGGAAATAAAATCGG
1 GGTTGGAGTATCCCCGATTGTGGAAAAATTGGTG---TTTT-GAAATAAAATCGG
* * * * *
985736 AGTTGGAGTATCCCCGATTATAG-AAAATTAGTGTCTTGAAAATAAAATCGG
1 GGTTGGAGTATCCCCGATTGTGGAAAAATTGGTGTTTTG-AAATAAAATCGG
*
985787 AGTTGG
1 GGTTGG
985793 GATATCTCTG
Statistics
Matches: 353, Mismatches: 85, Indels: 85
0.67 0.16 0.16
Matches are distributed among these distances:
49 2 0.01
50 3 0.01
51 90 0.25
52 108 0.31
53 47 0.13
54 48 0.14
55 40 0.11
56 8 0.02
57 7 0.02
ACGTcount: A:0.31, C:0.13, G:0.27, T:0.30
Consensus pattern (51 bp):
GGTTGGAGTATCCCCGATTGTGGAAAAATTGGTGTTTTGAAATAAAATCGG
Found at i:985478 original size:51 final size:52
Alignment explanation
Indices: 985347--985482 Score: 148
Period size: 51 Copynumber: 2.6 Consensus size: 52
985337 AAAATTGGTG
* * * * * *
985347 TTTTGAAAATAAAATCGGGGTTAGAGTATCCCCGATTGTGGAAAAATTAGTG
1 TTTTGGAAATAAAACCGGGGTTAGAGTATCCCCGATTATGGAAAAATCAATA
* * ** *
985399 TTTTAGCAATAAAACCGGGGTTTTAGTATCCCCGATTAT-GAGAAATCAATA
1 TTTTGGAAATAAAACCGGGGTTAGAGTATCCCCGATTATGGAAAAATCAATA
* *
985450 TTTTGGAAATAAAGCCGGGGTTGGAGTATCCCC
1 TTTTGGAAATAAAACCGGGGTTAGAGTATCCCC
985483 TCGGAGGTAA
Statistics
Matches: 68, Mismatches: 16, Indels: 1
0.80 0.19 0.01
Matches are distributed among these distances:
51 36 0.53
52 32 0.47
ACGTcount: A:0.32, C:0.14, G:0.24, T:0.30
Consensus pattern (52 bp):
TTTTGGAAATAAAACCGGGGTTAGAGTATCCCCGATTATGGAAAAATCAATA
Found at i:985528 original size:27 final size:28
Alignment explanation
Indices: 985465--985540 Score: 100
Period size: 27 Copynumber: 2.8 Consensus size: 28
985455 GAAATAAAGC
***
985465 CGGGGTTGGAGTATCCCCTCGGAGGTAA
1 CGGGGTTGGAGTATCCCCGATGAGGTAA
* *
985493 CGAGGTTGGAGTATCCCCGATGA-TTAA
1 CGGGGTTGGAGTATCCCCGATGAGGTAA
985520 CGGGGTTGGAGTATCCCCGAT
1 CGGGGTTGGAGTATCCCCGAT
985541 TGTGAAAAAT
Statistics
Matches: 42, Mismatches: 6, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
27 23 0.55
28 19 0.45
ACGTcount: A:0.20, C:0.21, G:0.36, T:0.24
Consensus pattern (28 bp):
CGGGGTTGGAGTATCCCCGATGAGGTAA
Found at i:985621 original size:159 final size:159
Alignment explanation
Indices: 985362--985791 Score: 659
Period size: 159 Copynumber: 2.7 Consensus size: 159
985352 AAAATAAAAT
* * * * * * **
985362 CGGGGTTAGAGTATCCCCGATTGTGGAAAAATTAGTG--TTTTAGCAATAAAACCGGGGTTTTAG
1 CGGGGTTGGAGTATCCCCGATTGT-GAAAAATTGGTGTTTTTTGGAAATAAAATCGGAGTTGGAG
* * * * * * *
985425 TATCCCCGATTAT-GAGAAATCAATATTTTGGAAATAAAGCCGGGGTTGGAGTATCCCCTCGGAG
65 TATCCCCGATTATAGA-AAATTAGTGTCTTGAAAATAAAACCGGGGTTGAAGTATCCCCTCGGAG
985489 GTAACGAGGTTGGAGTATCCCCGATGATTAA
129 GTAACGAGGTTGGAGTATCCCCGATGATTAA
985520 CGGGGTTGGAGTATCCCCGATTGTGAAAAATTGGTGTTTTTTGGAAATAAAATCGGAGTTGGAGT
1 CGGGGTTGGAGTATCCCCGATTGTGAAAAATTGGTGTTTTTTGGAAATAAAATCGGAGTTGGAGT
985585 ATCCCCGATTATAGAAAATTAGTGTCTTGAAAATAAAACCGGGGTTGAAGTATCCCCTCGGAGGT
66 ATCCCCGATTATAGAAAATTAGTGTCTTGAAAATAAAACCGGGGTTGAAGTATCCCCTCGGAGGT
985650 AACGAGGTTGGAGTATCCCCGATGATTAA
131 AACGAGGTTGGAGTATCCCCGATGATTAA
985679 CGGGGTTGGAGTATCCCCGATTGTGAAAAATTGGTGTTTTTTTGGAAATAAAATCGGAGTTGGAG
1 CGGGGTTGGAGTATCCCCGATTGTGAAAAATTGGTG-TTTTTTGGAAATAAAATCGGAGTTGGAG
* *
985744 TATCCCCGATTATAGAAAATTAGTGTCTTGAAAATAAAATCGGAGTTG
65 TATCCCCGATTATAGAAAATTAGTGTCTTGAAAATAAAACCGGGGTTG
985792 GGATATCTCT
Statistics
Matches: 251, Mismatches: 17, Indels: 6
0.92 0.06 0.02
Matches are distributed among these distances:
157 11 0.04
158 23 0.09
159 141 0.56
160 76 0.30
ACGTcount: A:0.30, C:0.14, G:0.27, T:0.29
Consensus pattern (159 bp):
CGGGGTTGGAGTATCCCCGATTGTGAAAAATTGGTGTTTTTTGGAAATAAAATCGGAGTTGGAGT
ATCCCCGATTATAGAAAATTAGTGTCTTGAAAATAAAACCGGGGTTGAAGTATCCCCTCGGAGGT
AACGAGGTTGGAGTATCCCCGATGATTAA
Found at i:985667 original size:28 final size:27
Alignment explanation
Indices: 985627--985698 Score: 81
Period size: 27 Copynumber: 2.6 Consensus size: 27
985617 ATAAAACCGG
* **
985627 GGTTGAAGTATCCCCTCGGAGGTAACGA
1 GGTTGGAGTATCCCCGAGGA-GTAACGA
* * *
985655 GGTTGGAGTATCCCCGATGATTAACGG
1 GGTTGGAGTATCCCCGAGGAGTAACGA
985682 GGTTGGAGTATCCCCGA
1 GGTTGGAGTATCCCCGA
985699 TTGTGAAAAA
Statistics
Matches: 38, Mismatches: 6, Indels: 1
0.84 0.13 0.02
Matches are distributed among these distances:
27 22 0.58
28 16 0.42
ACGTcount: A:0.22, C:0.21, G:0.33, T:0.24
Consensus pattern (27 bp):
GGTTGGAGTATCCCCGAGGAGTAACGA
Found at i:988557 original size:27 final size:27
Alignment explanation
Indices: 988519--988575 Score: 114
Period size: 27 Copynumber: 2.1 Consensus size: 27
988509 AGAACTCTAG
988519 TTGTTAAAGAATCAATCCATGTTGTTT
1 TTGTTAAAGAATCAATCCATGTTGTTT
988546 TTGTTAAAGAATCAATCCATGTTGTTT
1 TTGTTAAAGAATCAATCCATGTTGTTT
988573 TTG
1 TTG
988576 AAGATTCTAA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.28, C:0.11, G:0.16, T:0.46
Consensus pattern (27 bp):
TTGTTAAAGAATCAATCCATGTTGTTT
Found at i:993651 original size:79 final size:79
Alignment explanation
Indices: 993531--993939 Score: 312
Period size: 79 Copynumber: 5.2 Consensus size: 79
993521 AATTTAATAT
* *
993531 TTTAGAAATAAAAAATTG-GGTTGGAGTATCCCCTCGAAAATAACAGGGTTGGAGTATCTCTAAT
1 TTTAGAAAT--AAAATTGAGGTTGGAGTATCCCCTCGAAAATAACAGGGTTGGAGTATCCCCAAT
*
993595 GGTGAAAAATCAGTGC
64 GGTGAAAAATCACTGC
* * * * * * * *
993611 TTTGGAAATAAAATTGAGGTTGAAGTATTCCCTTGAAAATAATAGGGTTGGAGAATCCCCGATTG
1 TTTAGAAATAAAATTGAGGTTGGAGTATCCCCTCGAAAATAACAGGGTTGGAGTATCCCCAATGG
* *
993676 TGAAAAATTACTGT
66 TGAAAAATCACTGC
* * * * * *
993690 TTTAGAAATAAAATCGAGGTTGGAGTATCCCCTCAAAAATAAC-GAGGTTAGAGTATCCTCGATT
1 TTTAGAAATAAAATTGAGGTTGGAGTATCCCCTCGAAAATAACAG-GGTTGGAGTATCCCCAATG
* *
993754 GTGGAAAATCGA-TGT
65 GTGAAAAATC-ACTGC
* * ** * * * **
993769 TTTAGAAATAAAA-TCAGGATTAGAGTGCCCCCTCGAGAACAA-TGTGGTTGGAGTATCCCTGAT
1 TTTAGAAATAAAATTGAGG-TTGGAGTATCCCCTCGAAAATAACAG-GGTTGGAGTATCCCCAAT
* *
993832 TGTGAAAAATTGA-TG-
64 GGTGAAAAA-TCACTGC
** * * * * *
993847 TTGTAGAAATAAAACCGGGGTTCGAGTATCCCCTAGAAAATAACGGGGTTGGAGTATCCCCGATG
1 TT-TAGAAATAAAATTGAGGTTGGAGTATCCCCTCGAAAATAACAGGGTTGGAGTATCCCCAATG
**
993912 GTGAAAAATCGGTG-
65 GTGAAAAATCACTGC
993926 TTTAAGAAATAAAA
1 TTT-AGAAATAAAA
993940 ACATTAATGA
Statistics
Matches: 265, Mismatches: 53, Indels: 23
0.78 0.16 0.07
Matches are distributed among these distances:
78 15 0.06
79 237 0.89
80 13 0.05
ACGTcount: A:0.35, C:0.13, G:0.24, T:0.28
Consensus pattern (79 bp):
TTTAGAAATAAAATTGAGGTTGGAGTATCCCCTCGAAAATAACAGGGTTGGAGTATCCCCAATGG
TGAAAAATCACTGC
Found at i:993729 original size:158 final size:152
Alignment explanation
Indices: 993516--993939 Score: 415
Period size: 158 Copynumber: 2.7 Consensus size: 152
993506 CATCCCCCGA
* * *
993516 TGAAAAATTTAATATTTTAGAAATAAAAAATTGGGTTGGAGTATCCCCTCGAAAATAACAGGGTT
1 TGAAAAA-TT-ATGTTTTAGAAAT--AAAATCGGGTTGGAGTATCCCCTCAAAAATAAC-GGGTT
* * * **
993581 GGAGTATCTCTAATGGTGAAAAATCAGTGCTTTGGAAATAAAATTGAGG-TT-GAAGTATTCCCT
61 GGAGTATC-CTGATGGTGAAAAATC-GTG-TTTAGAAATAAAA-TCAGGATTAG-AGTACCCCCT
* *
993644 TGAAAATAATAG-GGTTGGAGAATCCCCGATTG
121 CGAAAACAAT-GTGGTTGGAGAATCCCCGATTG
*
993676 TGAAAAATTACTGTTTTAGAAATAAAATCGAGGTTGGAGTATCCCCTCAAAAATAACGAGGTTAG
1 TGAAAAATTA-TGTTTTAGAAATAAAATCG-GGTTGGAGTATCCCCTCAAAAATAACG-GGTTGG
* * * *
993741 AGTATCCTCGATTGTGGAAAATCGATGTTTTAGAAATAAAATCAGGATTAGAGTGCCCCCTCGAG
63 AGTATCCT-GATGGTGAAAAATCG-TG-TTTAGAAATAAAATCAGGATTAGAGTACCCCCTCGAA
* *
993806 AACAATGTGGTTGGAGTATCCCTGATTG
125 AACAATGTGGTTGGAGAATCCCCGATTG
* * *
993834 TGAAAAATTGATGTTGTAGAAATAAAACCGGGGTTCGAGTATCCCCT-AGAAAATAACGGGGTTG
1 TGAAAAATT-ATGTTTTAGAAATAAAATC-GGGTTGGAGTATCCCCTCA-AAAATAAC-GGGTTG
*
993898 GAGTATCCCCGATGGTGAAAAATCGGTGTTTAAGAAATAAAA
62 GAGTAT-CCTGATGGTGAAAAATC-GTGTTT-AGAAATAAAA
993940 ACATTAATGA
Statistics
Matches: 224, Mismatches: 25, Indels: 32
0.80 0.09 0.11
Matches are distributed among these distances:
157 19 0.08
158 178 0.79
159 20 0.09
160 7 0.03
ACGTcount: A:0.36, C:0.12, G:0.23, T:0.28
Consensus pattern (152 bp):
TGAAAAATTATGTTTTAGAAATAAAATCGGGTTGGAGTATCCCCTCAAAAATAACGGGTTGGAGT
ATCCTGATGGTGAAAAATCGTGTTTAGAAATAAAATCAGGATTAGAGTACCCCCTCGAAAACAAT
GTGGTTGGAGAATCCCCGATTG
Found at i:994246 original size:49 final size:49
Alignment explanation
Indices: 994174--994413 Score: 332
Period size: 49 Copynumber: 5.0 Consensus size: 49
994164 TTTGTTTAGG
* * *
994174 ACCTTTATCTTTAAGACCAATGTAGCTGGCCTTGACTCAGCACATTGGC
1 ACCTTCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGC
994223 ACCTTCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGC
1 ACCTTCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGC
*
994272 ACC-TCACCTTTAAGTCCAAATGTAGCTGGCCTTGAATCAGCACATTGGC
1 ACCTTCATCTTTAAGTCC-AATGTAGCTGGCCTTGAATCAGCACATTGGC
* *
994321 A----C--CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGC
1 ACCTTCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGC
*
994364 ACCTTTTCCATCTTTAAGTTCAATGTAGCTGGCCTTGAATCAGCACATTG
1 ACC--TT-CATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTG
994414 ACATCCTTTT
Statistics
Matches: 172, Mismatches: 9, Indels: 17
0.87 0.05 0.09
Matches are distributed among these distances:
43 30 0.17
44 10 0.06
46 1 0.01
48 13 0.08
49 81 0.47
50 1 0.01
52 36 0.21
ACGTcount: A:0.25, C:0.26, G:0.18, T:0.31
Consensus pattern (49 bp):
ACCTTCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGC
Found at i:994351 original size:43 final size:43
Alignment explanation
Indices: 994231--994369 Score: 206
Period size: 43 Copynumber: 3.1 Consensus size: 43
994221 GCACCTTCAT
994231 CTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTCAC
1 CTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGG-----CAC
994279 CTTTAAGTCCAAATGTAGCTGGCCTTGAATCAGCACATTGGCAC
1 CTTTAAGTCC-AATGTAGCTGGCCTTGAATCAGCACATTGGCAC
* *
994323 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCAC
1 CTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCAC
994366 CTTT
1 CTTT
994370 TCCATCTTTA
Statistics
Matches: 88, Mismatches: 2, Indels: 7
0.91 0.02 0.07
Matches are distributed among these distances:
43 35 0.40
44 13 0.15
48 10 0.11
49 30 0.34
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.29
Consensus pattern (43 bp):
CTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCAC
Found at i:994362 original size:92 final size:94
Alignment explanation
Indices: 994231--994422 Score: 291
Period size: 92 Copynumber: 2.0 Consensus size: 94
994221 GCACCTTCAT
*
994231 CTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACC-T-CACCTTTAAGTCCAAATG
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTTCCACCTTTAAGTCC-AATG
*
994294 TAGCTGGCCTTGAATCAGCACATTGGCA-C
65 TAGCTGGCCTTGAATCAGCACATTGACATC
* * *
994323 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTTCCATCTTTAAGTTCAAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACC--TTCCACCTTTAAGTCCAAT
994388 GTAGCTGGCCTTGAATCAGCACATTGACATC
64 GTAGCTGGCCTTGAATCAGCACATTGACATC
994419 CTTT
1 CTTT
994423 TTCTCATCTT
Statistics
Matches: 90, Mismatches: 5, Indels: 6
0.89 0.05 0.06
Matches are distributed among these distances:
92 42 0.47
95 32 0.36
96 16 0.18
ACGTcount: A:0.26, C:0.26, G:0.18, T:0.31
Consensus pattern (94 bp):
CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTTCCACCTTTAAGTCCAATGT
AGCTGGCCTTGAATCAGCACATTGACATC
Found at i:994401 original size:52 final size:55
Alignment explanation
Indices: 994323--994535 Score: 180
Period size: 52 Copynumber: 3.7 Consensus size: 55
994313 ACATTGGCAC
* *
994323 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA-CC-TTTTC-CAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGACATCCTTTTTCTCAT
* *
994375 CTTTAAGTTCAATGTAGCTGGCCTTGAATCAGCACATTGACATCCTTTTTCTCAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGACATCCTTTTTCTCAT
* * * * * * *
994430 CTTTAAGCCCAATATCGTTGGTCGTGAATCAACATATTGGTATCTTTATCACTTTTCTCATCTTC
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATT-G-A-C---ATC-C-TTT-T--TC-TC
994495 AT
54 AT
* *
994497 CTTTAAGTCCAATATTGCTGGCCTTGAATCAGCATATTG
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTG
994536 GCACCTTCAT
Statistics
Matches: 127, Mismatches: 19, Indels: 16
0.78 0.12 0.10
Matches are distributed among these distances:
52 38 0.30
53 2 0.02
54 5 0.04
55 32 0.25
56 1 0.01
57 1 0.01
58 1 0.01
61 3 0.02
62 1 0.01
63 3 0.02
64 1 0.01
66 3 0.02
67 36 0.28
ACGTcount: A:0.24, C:0.23, G:0.15, T:0.38
Consensus pattern (55 bp):
CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGACATCCTTTTTCTCAT
Found at i:1001578 original size:14 final size:14
Alignment explanation
Indices: 1001541--1001601 Score: 72
Period size: 14 Copynumber: 4.5 Consensus size: 14
1001531 AGACGAAGGG
*
1001541 AGAAAAAGGAAG-A
1 AGAAAAAGAAAGAA
1001554 AG-AAAAGAAAGAA
1 AGAAAAAGAAAGAA
*
1001567 AGAAAAATAAAGAA
1 AGAAAAAGAAAGAA
* *
1001581 AGAAAGAGGAAGAA
1 AGAAAAAGAAAGAA
1001595 AGAAAAA
1 AGAAAAA
1001602 ACCAAAAAAA
Statistics
Matches: 40, Mismatches: 6, Indels: 3
0.82 0.12 0.06
Matches are distributed among these distances:
12 8 0.20
13 5 0.12
14 27 0.68
ACGTcount: A:0.74, C:0.00, G:0.25, T:0.02
Consensus pattern (14 bp):
AGAAAAAGAAAGAA
Found at i:1001596 original size:18 final size:18
Alignment explanation
Indices: 1001549--1001599 Score: 66
Period size: 18 Copynumber: 2.8 Consensus size: 18
1001539 GGAGAAAAAG
1001549 GAAGAAGAAAAGAAAGAAA
1 GAAGAAG-AAAGAAAGAAA
* *
1001568 GAAAAATAAAGAAAGAAA
1 GAAGAAGAAAGAAAGAAA
*
1001586 GAGGAAGAAAGAAA
1 GAAGAAGAAAGAAA
1001600 AAACCAAAAA
Statistics
Matches: 27, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
18 22 0.81
19 5 0.19
ACGTcount: A:0.73, C:0.00, G:0.25, T:0.02
Consensus pattern (18 bp):
GAAGAAGAAAGAAAGAAA
Found at i:1001616 original size:8 final size:8
Alignment explanation
Indices: 1001550--1001620 Score: 52
Period size: 8 Copynumber: 8.4 Consensus size: 8
1001540 GAGAAAAAGG
*
1001550 AAGAAGAA
1 AAGAAAAA
*
1001558 AAGAAAGA
1 AAGAAAAA
1001566 AAGAAAAATA
1 AAG-AAAA-A
1001576 AAGAAAGAA
1 AAGAAA-AA
* *
1001585 AGAGGAAGA
1 A-AGAAAAA
1001594 AAGAAAAA
1 AAGAAAAA
**
1001602 ACCAAAAA
1 AAGAAAAA
1001610 AAGAAAAA
1 AAGAAAAA
1001618 AAG
1 AAG
1001621 TGGCCTAAGA
Statistics
Matches: 48, Mismatches: 11, Indels: 8
0.72 0.16 0.12
Matches are distributed among these distances:
8 29 0.60
9 10 0.21
10 9 0.19
ACGTcount: A:0.76, C:0.03, G:0.20, T:0.01
Consensus pattern (8 bp):
AAGAAAAA
Found at i:1001903 original size:3 final size:3
Alignment explanation
Indices: 1001895--1001937 Score: 86
Period size: 3 Copynumber: 14.3 Consensus size: 3
1001885 AGATTTCTGA
1001895 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
1001938 TATGCCATGC
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 40 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:1005581 original size:13 final size:13
Alignment explanation
Indices: 1005563--1005587 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1005553 ATATTGCACA
1005563 GTATCGATACATT
1 GTATCGATACATT
1005576 GTATCGATACAT
1 GTATCGATACAT
1005588 GACCAAATGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
GTATCGATACATT
Found at i:1007577 original size:13 final size:13
Alignment explanation
Indices: 1007559--1007584 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
1007549 CATTTTTCTG
1007559 TGTATCGATACAT
1 TGTATCGATACAT
1007572 TGTATCGATACAT
1 TGTATCGATACAT
1007585 GGATCTTTGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:1007578 original size:33 final size:33
Alignment explanation
Indices: 1007539--1007604 Score: 96
Period size: 33 Copynumber: 2.0 Consensus size: 33
1007529 GCCAAGGGAA
***
1007539 TGTATCGATACATTTTTCTGTGTATCGATACAT
1 TGTATCGATACATGGATCTGTGTATCGATACAT
*
1007572 TGTATCGATACATGGATCTTTGTATCGATACAT
1 TGTATCGATACATGGATCTGTGTATCGATACAT
1007605 CTTGAAAATT
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 29 1.00
ACGTcount: A:0.26, C:0.15, G:0.17, T:0.42
Consensus pattern (33 bp):
TGTATCGATACATGGATCTGTGTATCGATACAT
Found at i:1015539 original size:55 final size:54
Alignment explanation
Indices: 1015456--1016309 Score: 938
Period size: 55 Copynumber: 14.9 Consensus size: 54
1015446 CACCTTCTCT
1015456 TTTTAAAGCCCACACAAGTTGGTGGCACTTCCTAGTCCTCAAAGAGCAGGACGCC
1 TTTTAAAGCCCACACAAGTTGGTGGCACTTCC-AGTCCTCAAAGAGCAGGACGCC
1015511 TTTTAAAGCCCACACAAGTTGGTGGCACTTCCCAGTCCTCAAAGAGCAGGACGCCTTCTCC
1 TTTTAAAGCCCACACAAGTTGGTGGCACTT-CCAGTCCTCAAAGAGCAGGACG------CC
1015572 TTTTAAAGCCCACACAAGTTGGTGGCACTTCCTAGTCCTCAAAGAGCAGGACGCC
1 TTTTAAAGCCCACACAAGTTGGTGGCACTTCC-AGTCCTCAAAGAGCAGGACGCC
* *
1015627 TCTTAAAGCCCACACAAGTTGGTGGCACTTCCCAGTCCTCAAAGAGTAGGACGCCTTCTCC
1 TTTTAAAGCCCACACAAGTTGGTGGCACTT-CCAGTCCTCAAAGAGCAGGACG------CC
* *
1015688 TTTTAAAGCCCACACAAGTTGGTGGCACTTCCTAGTCCTCAAAGAGCAAGATGCC
1 TTTTAAAGCCCACACAAGTTGGTGGCACTTCC-AGTCCTCAAAGAGCAGGACGCC
* * *
1015743 TTTTAAAGCCCACACAAGTTGGTGGCATTTTCCAGTCCTCAAAGAGTAGGACACC
1 TTTTAAAGCCCACACAAGTTGGTGGCA-CTTCCAGTCCTCAAAGAGCAGGACGCC
* * **
1015798 TCTTAAAGCCCACACAAGTTGGTGGCACTTCCTAATCCTCAAAGAGCAGGATACC
1 TTTTAAAGCCCACACAAGTTGGTGGCACTTCC-AGTCCTCAAAGAGCAGGACGCC
* *
1015853 TTTTAAATCCCACACAAGTTGGTGGCACTTCCCAGTCCTCAAAGAGCAGGATGCCTTC
1 TTTTAAAGCCCACACAAGTTGGTGGCACTT-CCAGTCCTCAAAGAGCAGGACG-C--C
* * *
1015911 TTCTTTCAAAGCCCACACAAGTTGGTGGCATTTTCCAATCCTCAAAGAGCAGGATGCC
1 -T-TTT-AAAGCCCACACAAGTTGGTGGCA-CTTCCAGTCCTCAAAGAGCAGGACGCC
* * *
1015969 TTTTAAAGCCCACCCAAGTTGGTGGCACCTT-CAGTCCTCAAAGAGAAGGATGCTTTTTC
1 TTTTAAAGCCCACACAAGTTGGTGGCA-CTTCCAGTCCTCAAAGAGCAGGACGC-----C
* *
1016028 TTTTCAAAGCCCACACAAGTTGGTGGCATTTTCCAGTCCCCAAAGAGCAGGACGCCTTTTC
1 TTTT-AAAGCCCACACAAGTTGGTGGCA-CTTCCAGTCCTCAAAGAGCAGGACG-C----C
* *
1016089 TTTTAAAGCCCACACAAATTAGTGGCACCTT-CAGTCCTCAAAGAGCAGGACGCCTTC
1 TTTTAAAGCCCACACAAGTTGGTGGCA-CTTCCAGTCCTCAAAGAGCAGGACG-C--C
* * *
1016146 TTCTTTCAAAGCCCACACAAGTTGGTGGCATTTTCCAATCCTCAAAGAGCAGGACACC
1 -T-TTT-AAAGCCCACACAAGTTGGTGGCA-CTTCCAGTCCTCAAAGAGCAGGACGCC
* **
1016204 TTTCAAAGCCCACACAAGTTGGTGGCATCTTTTAGTCCTCAAAGAGCAGGACGCC
1 TTTTAAAGCCCACACAAGTTGGTGGCA-CTTCCAGTCCTCAAAGAGCAGGACGCC
* * ** *
1016259 TTTCAAAGCCCACACGAGTTGGTGGCACTTTTTAGTCCTCAATGAGCAGGA
1 TTTTAAAGCCCACACAAGTTGGTGGCAC-TTCCAGTCCTCAAAGAGCAGGA
1016310 TACACTTTAT
Statistics
Matches: 707, Mismatches: 53, Indels: 78
0.84 0.06 0.09
Matches are distributed among these distances:
54 25 0.04
55 355 0.50
56 16 0.02
57 5 0.01
58 4 0.01
59 31 0.04
60 79 0.11
61 189 0.27
62 3 0.00
ACGTcount: A:0.27, C:0.29, G:0.20, T:0.24
Consensus pattern (54 bp):
TTTTAAAGCCCACACAAGTTGGTGGCACTTCCAGTCCTCAAAGAGCAGGACGCC
Found at i:1015626 original size:116 final size:116
Alignment explanation
Indices: 1015422--1016309 Score: 1134
Period size: 116 Copynumber: 7.7 Consensus size: 116
1015412 TCTTTTAGCC
* * * *
1015422 CTTCCTAGTCCTCAAAGTGCAGGACACCTTCTCTTTTTAAAGCCCACACAAGTTGGTGGCACTTC
1 CTTCCCAGTCCTCAAAGAGCAGGACGCCTTCTCCTTTTAAAGCCCACACAAGTTGGTGGCACTTC
1015487 CTAGTCCTCAAAGAGCAGGACGCCTTTTAAAGCCCACACAAGTTGGTGGCA
66 CTAGTCCTCAAAGAGCAGGACGCCTTTTAAAGCCCACACAAGTTGGTGGCA
1015538 CTTCCCAGTCCTCAAAGAGCAGGACGCCTTCTCCTTTTAAAGCCCACACAAGTTGGTGGCACTTC
1 CTTCCCAGTCCTCAAAGAGCAGGACGCCTTCTCCTTTTAAAGCCCACACAAGTTGGTGGCACTTC
*
1015603 CTAGTCCTCAAAGAGCAGGACGCCTCTTAAAGCCCACACAAGTTGGTGGCA
66 CTAGTCCTCAAAGAGCAGGACGCCTTTTAAAGCCCACACAAGTTGGTGGCA
*
1015654 CTTCCCAGTCCTCAAAGAGTAGGACGCCTTCTCCTTTTAAAGCCCACACAAGTTGGTGGCACTTC
1 CTTCCCAGTCCTCAAAGAGCAGGACGCCTTCTCCTTTTAAAGCCCACACAAGTTGGTGGCACTTC
* *
1015719 CTAGTCCTCAAAGAGCAAGATGCCTTTTAAAGCCCACACAAGTTGGTGGCA
66 CTAGTCCTCAAAGAGCAGGACGCCTTTTAAAGCCCACACAAGTTGGTGGCA
* * * *
1015770 TTTTCCAGTCCTCAAAGAGTAGGAC-AC--CT-C--TTAAAGCCCACACAAGTTGGTGGCACTTC
1 CTTCCCAGTCCTCAAAGAGCAGGACGCCTTCTCCTTTTAAAGCCCACACAAGTTGGTGGCACTTC
* ** *
1015829 CTAATCCTCAAAGAGCAGGATACCTTTTAAATCCCACACAAGTTGGTGGCA
66 CTAGTCCTCAAAGAGCAGGACGCCTTTTAAAGCCCACACAAGTTGGTGGCA
* * * *
1015880 CTTCCCAGTCCTCAAAGAGCAGGATGCCTTCTTCTTTCAAAGCCCACACAAGTTGGTGGCATTTT
1 CTTCCCAGTCCTCAAAGAGCAGGACGCCTTCTCCTTTTAAAGCCCACACAAGTTGGTGGCA-CTT
* * *
1015945 CC-AATCCTCAAAGAGCAGGATGCCTTTTAAAGCCCACCCAAGTTGGTGGCA
65 CCTAGTCCTCAAAGAGCAGGACGCCTTTTAAAGCCCACACAAGTTGGTGGCA
* * * * *
1015996 CCTT--CAGTCCTCAAAGAGAAGGATG-CTTTTTCTTTTCAAAGCCCACACAAGTTGGTGGCATT
1 -CTTCCCAGTCCTCAAAGAGCAGGACGCCTTCTCCTTTT-AAAGCCCACACAAGTTGGTGGCA-C
* * *
1016058 TTCC-AGTCCCCAAAGAGCAGGACGCCTTTTCTTTTAAAGCCCACACAAATTAGTGGCA
63 TTCCTAGTCCTCAAAGAGCAGGACG-C----CTTTTAAAGCCCACACAAGTTGGTGGCA
* * *
1016116 CCTT--CAGTCCTCAAAGAGCAGGACGCCTTCTTCTTTCAAAGCCCACACAAGTTGGTGGCATTT
1 -CTTCCCAGTCCTCAAAGAGCAGGACGCCTTCTCCTTTTAAAGCCCACACAAGTTGGTGGCA-CT
* * *
1016179 TCC-AATCCTCAAAGAGCAGGACACCTTTCAAAGCCCACACAAGTTGGTGGCA
64 TCCTAGTCCTCAAAGAGCAGGACGCCTTTTAAAGCCCACACAAGTTGGTGGCA
** *
1016231 TCTT-TTAGTCCTCAAAGAGCAGGACGCCTT-T-C----AAAGCCCACACGAGTTGGTGGCACTT
1 -CTTCCCAGTCCTCAAAGAGCAGGACGCCTTCTCCTTTTAAAGCCCACACAAGTTGGTGGCACTT
** *
1016289 TTTAGTCCTCAATGAGCAGGA
65 CCTAGTCCTCAAAGAGCAGGA
1016310 TACACTTTAT
Statistics
Matches: 702, Mismatches: 53, Indels: 40
0.88 0.07 0.05
Matches are distributed among these distances:
109 2 0.00
110 135 0.19
111 1 0.00
112 1 0.00
113 4 0.01
114 11 0.02
115 96 0.14
116 341 0.49
117 7 0.01
119 1 0.00
120 94 0.13
121 9 0.01
ACGTcount: A:0.27, C:0.29, G:0.20, T:0.25
Consensus pattern (116 bp):
CTTCCCAGTCCTCAAAGAGCAGGACGCCTTCTCCTTTTAAAGCCCACACAAGTTGGTGGCACTTC
CTAGTCCTCAAAGAGCAGGACGCCTTTTAAAGCCCACACAAGTTGGTGGCA
Found at i:1015747 original size:171 final size:169
Alignment explanation
Indices: 1015458--1016309 Score: 939
Period size: 171 Copynumber: 5.0 Consensus size: 169
1015448 CCTTCTCTTT
*
1015458 TTAAAGCCCACACAAGTTGGTGGCACTTCCTAGTCCTCAAAGAGCAGGACG----CCTTTTAAAG
1 TTAAAGCCCACACAAGTTGGTGGCACTTCCCAGTCCTCAAAGAGCAGGACGCTTTCCTTTTAAAG
*
1015519 CCCACACAAGTTGGTGGCACTTCCCAGTCCTCAAAGAGCAGGACGCCTTCTCCTTTTAAAGCCCA
66 CCCACACAAGTTGGTGGCACTTCCCAGTCCTCAAAGAGCAGGA-----T-GCCTTTTAAAGCCCA
1015584 CACAAGTTGGTGGCA-CTTCCTAGTCCTCAAAGAGCAGGACGCCTC
125 CACAAGTTGGTGGCATCTTCC-AGTCCTCAAAGAGCAGGACGCCTC
*
1015629 TTAAAGCCCACACAAGTTGGTGGCACTTCCCAGTCCTCAAAGAGTAGGACGCCTTCTCCTTTTAA
1 TTAAAGCCCACACAAGTTGGTGGCACTTCCCAGTCCTCAAAGAGCAGGACG-CTT-TCCTTTTAA
* *
1015694 AGCCCACACAAGTTGGTGGCACTTCCTAGTCCTCAAAGAGCAAGATGCCTTTTAAAGCCCACACA
64 AGCCCACACAAGTTGGTGGCACTTCCCAGTCCTCAAAGAGCAGGATGCCTTTTAAAGCCCACACA
* * *
1015759 AGTTGGTGGCATTTTCCAGTCCTCAAAGAGTAGGACACCTC
129 AGTTGGTGGCATCTTCCAGTCCTCAAAGAGCAGGACGCCTC
* * * *
1015800 TTAAAGCCCACACAAGTTGGTGGCACTTCCTAATCCTCAAAGAGCAGGA----TACCTTTTAAAT
1 TTAAAGCCCACACAAGTTGGTGGCACTTCCCAGTCCTCAAAGAGCAGGACGCTTTCCTTTTAAAG
1015861 CCCACACAAGTTGGTGGCACTTCCCAGTCCTCAAAGAGCAGGATGCCTTCTTCTTTCAAAGCCCA
66 CCCACACAAGTTGGTGGCACTTCCCAGTCCTCAAAGAGCAGGATG-C--C-T-TTT-AAAGCCCA
* * * *
1015926 CACAAGTTGGTGGCATTTTCCAATCCTCAAAGAGCAGGATGCCTT
125 CACAAGTTGGTGGCATCTTCCAGTCCTCAAAGAGCAGGACGCCTC
* * * *
1015971 TTAAAGCCCACCCAAGTTGGTGGCACCTT--CAGTCCTCAAAGAGAAGGATGCTTTTTCTTTTCA
1 TTAAAGCCCACACAAGTTGGTGGCA-CTTCCCAGTCCTCAAAGAGCAGGACGC-TTTCCTTTT-A
* * * *
1016034 AAGCCCACACAAGTTGGTGGCATTTTCCAGTCCCCAAAGAGCAGGACGCCTTTTCTTTTAAAGCC
63 AAGCCCACACAAGTTGGTGGCACTTCCCAGTCCTCAAAGAGCAGGATG-C----CTTTTAAAGCC
* * *
1016099 CACACAAATTAGTGGCACCTT-CAGTCCTCAAAGAGCAGGACGCCTTCTTC
123 CACACAAGTTGGTGGCATCTTCCAGTCCTCAAAGAGCAGGACG-C--C-TC
* * * * *
1016149 TTTCAAAGCCCACACAAGTTGGTGGCATTTTCCAATCCTCAAAGAGCAGGA--C--ACCTTTCAA
1 -TT-AAAGCCCACACAAGTTGGTGGCACTTCCCAGTCCTCAAAGAGCAGGACGCTTTCCTTTTAA
** * *
1016210 AGCCCACACAAGTTGGTGGCATCTT-TTAGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACAC
64 AGCCCACACAAGTTGGTGGCA-CTTCCCAGTCCTCAAAGAGCAGGATGCCTTTTAAAGCCCACAC
* ** *
1016274 GAGTTGGTGGCA-CTTTTTAGTCCTCAATGAGCAGGA
128 AAGTTGGTGGCATC-TTCCAGTCCTCAAAGAGCAGGA
1016310 TACACTTTAT
Statistics
Matches: 593, Mismatches: 55, Indels: 66
0.83 0.08 0.09
Matches are distributed among these distances:
165 52 0.09
166 2 0.00
168 1 0.00
169 2 0.00
170 45 0.08
171 235 0.40
172 8 0.01
174 20 0.03
175 72 0.12
176 55 0.09
177 53 0.09
178 4 0.01
179 5 0.01
180 22 0.04
181 17 0.03
ACGTcount: A:0.27, C:0.29, G:0.20, T:0.24
Consensus pattern (169 bp):
TTAAAGCCCACACAAGTTGGTGGCACTTCCCAGTCCTCAAAGAGCAGGACGCTTTCCTTTTAAAG
CCCACACAAGTTGGTGGCACTTCCCAGTCCTCAAAGAGCAGGATGCCTTTTAAAGCCCACACAAG
TTGGTGGCATCTTCCAGTCCTCAAAGAGCAGGACGCCTC
Found at i:1017215 original size:13 final size:13
Alignment explanation
Indices: 1017197--1017222 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
1017187 CATTTTTCTG
1017197 TGTATCGATACAT
1 TGTATCGATACAT
1017210 TGTATCGATACAT
1 TGTATCGATACAT
1017223 GGATCTTTGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:1017216 original size:33 final size:33
Alignment explanation
Indices: 1017177--1017242 Score: 96
Period size: 33 Copynumber: 2.0 Consensus size: 33
1017167 GCCAAGGGAA
***
1017177 TGTATCGATACATTTTTCTGTGTATCGATACAT
1 TGTATCGATACATGGATCTGTGTATCGATACAT
*
1017210 TGTATCGATACATGGATCTTTGTATCGATACAT
1 TGTATCGATACATGGATCTGTGTATCGATACAT
1017243 CTTGAAAATT
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 29 1.00
ACGTcount: A:0.26, C:0.15, G:0.17, T:0.42
Consensus pattern (33 bp):
TGTATCGATACATGGATCTGTGTATCGATACAT
Found at i:1019688 original size:28 final size:28
Alignment explanation
Indices: 1019648--1019724 Score: 93
Period size: 28 Copynumber: 2.8 Consensus size: 28
1019638 ATTTTTCACA
* *
1019648 ATCGAGGATACTCCAACCTCGTTA-TCTC
1 ATCGGGGATACTCCAACCCCGTTACT-TC
1019676 ATCGGGGATACTCCAACCCCGTTACTTC
1 ATCGGGGATACTCCAACCCCGTTACTTC
***
1019704 CGAGGGGATACTCCAACCCCG
1 ATCGGGGATACTCCAACCCCG
1019725 GCTTTATTCC
Statistics
Matches: 43, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
28 42 0.98
29 1 0.02
ACGTcount: A:0.23, C:0.35, G:0.19, T:0.22
Consensus pattern (28 bp):
ATCGGGGATACTCCAACCCCGTTACTTC
Found at i:1022890 original size:8 final size:8
Alignment explanation
Indices: 1022877--1022915 Score: 60
Period size: 8 Copynumber: 4.8 Consensus size: 8
1022867 ATTTGATTAA
1022877 ATTTTGTG
1 ATTTTGTG
1022885 ATTTTGTG
1 ATTTTGTG
*
1022893 ATTTCGTG
1 ATTTTGTG
1022901 ATTTTGTG
1 ATTTTGTG
1022909 ATGTTTG
1 AT-TTTG
1022916 ATGTTGAAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
8 24 0.86
9 4 0.14
ACGTcount: A:0.13, C:0.03, G:0.26, T:0.59
Consensus pattern (8 bp):
ATTTTGTG
Found at i:1023131 original size:13 final size:13
Alignment explanation
Indices: 1023112--1023150 Score: 60
Period size: 13 Copynumber: 3.0 Consensus size: 13
1023102 ACAGCATTCT
1023112 CTGTATCGATACA
1 CTGTATCGATACA
*
1023125 TTGTATCGATACA
1 CTGTATCGATACA
*
1023138 CTATATCGATACA
1 CTGTATCGATACA
1023151 AAGGGTTTAT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
13 23 1.00
ACGTcount: A:0.33, C:0.21, G:0.13, T:0.33
Consensus pattern (13 bp):
CTGTATCGATACA
Found at i:1023617 original size:20 final size:22
Alignment explanation
Indices: 1023592--1023636 Score: 67
Period size: 20 Copynumber: 2.1 Consensus size: 22
1023582 GCAGCACTCA
*
1023592 CCAGGTCACGACC-GGC-ACCC
1 CCAGGTCACAACCGGGCAACCC
1023612 CCAGGTCACAACCGGGCAACCC
1 CCAGGTCACAACCGGGCAACCC
1023634 CCA
1 CCA
1023637 CACTCACAGC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 12 0.55
21 3 0.14
22 7 0.32
ACGTcount: A:0.24, C:0.49, G:0.22, T:0.04
Consensus pattern (22 bp):
CCAGGTCACAACCGGGCAACCC
Found at i:1025016 original size:34 final size:35
Alignment explanation
Indices: 1024978--1025044 Score: 102
Period size: 37 Copynumber: 1.9 Consensus size: 35
1024968 CCTTACAACA
1024978 CTATC-TTTC-AAGGCTAAGATAGAAACCTCTCTCT
1 CTATCTTTTCAAAGGCTAAGATAG-AACCTCTCTCT
1025012 CTATCTTTTTCAAAGGCTAAGATAGAACCTCTC
1 CTATC-TTTTCAAAGGCTAAGATAGAACCTCTC
1025045 AATCACTTAG
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
34 5 0.17
36 12 0.40
37 13 0.43
ACGTcount: A:0.30, C:0.25, G:0.12, T:0.33
Consensus pattern (35 bp):
CTATCTTTTCAAAGGCTAAGATAGAACCTCTCTCT
Found at i:1025520 original size:13 final size:13
Alignment explanation
Indices: 1025502--1025527 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
1025492 CAATTTTTTG
1025502 TGTATCGATACAT
1 TGTATCGATACAT
1025515 TGTATCGATACAT
1 TGTATCGATACAT
1025528 ACTTGCTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:1025592 original size:21 final size:21
Alignment explanation
Indices: 1025566--1025641 Score: 109
Period size: 21 Copynumber: 3.7 Consensus size: 21
1025556 CTGCCAAGAA
1025566 ATGTATCGATACATCTTTTTC
1 ATGTATCGATACATCTTTTTC
****
1025587 ATGTATCGATACAT-TGCAAC
1 ATGTATCGATACATCTTTTTC
1025607 ATGTATCGATACATCTTTTTC
1 ATGTATCGATACATCTTTTTC
1025628 ATGTATCGATACAT
1 ATGTATCGATACAT
1025642 TGCAACATGT
Statistics
Matches: 46, Mismatches: 8, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
20 16 0.35
21 30 0.65
ACGTcount: A:0.29, C:0.18, G:0.12, T:0.41
Consensus pattern (21 bp):
ATGTATCGATACATCTTTTTC
Found at i:1025611 original size:20 final size:20
Alignment explanation
Indices: 1025586--1025659 Score: 103
Period size: 20 Copynumber: 3.6 Consensus size: 20
1025576 ACATCTTTTT
1025586 CATGTATCGATACATTGCAA
1 CATGTATCGATACATTGCAA
****
1025606 CATGTATCGATACATCTTTTT
1 CATGTATCGATACAT-TGCAA
1025627 CATGTATCGATACATTGCAA
1 CATGTATCGATACATTGCAA
1025647 CATGTATCGATAC
1 CATGTATCGATAC
1025660 TTTGAATTGT
Statistics
Matches: 45, Mismatches: 8, Indels: 2
0.82 0.15 0.04
Matches are distributed among these distances:
20 29 0.64
21 16 0.36
ACGTcount: A:0.31, C:0.20, G:0.14, T:0.35
Consensus pattern (20 bp):
CATGTATCGATACATTGCAA
Found at i:1025623 original size:41 final size:41
Alignment explanation
Indices: 1025566--1025659 Score: 188
Period size: 41 Copynumber: 2.3 Consensus size: 41
1025556 CTGCCAAGAA
1025566 ATGTATCGATACATCTTTTTCATGTATCGATACATTGCAAC
1 ATGTATCGATACATCTTTTTCATGTATCGATACATTGCAAC
1025607 ATGTATCGATACATCTTTTTCATGTATCGATACATTGCAAC
1 ATGTATCGATACATCTTTTTCATGTATCGATACATTGCAAC
1025648 ATGTATCGATAC
1 ATGTATCGATAC
1025660 TTTGAATTGT
Statistics
Matches: 53, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 53 1.00
ACGTcount: A:0.30, C:0.19, G:0.13, T:0.38
Consensus pattern (41 bp):
ATGTATCGATACATCTTTTTCATGTATCGATACATTGCAAC
Found at i:1026317 original size:21 final size:21
Alignment explanation
Indices: 1026276--1026319 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
1026266 CTCCCCTTTA
* *
1026276 TCTCCCCCGTTTATTAATAAT
1 TCTCCCCCGTTAATCAATAAT
1026297 TCTCCCCC-TTAATCAAGTAAT
1 TCTCCCCCGTTAATCAA-TAAT
1026318 TC
1 TC
1026320 ATATTAAAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
20 6 0.30
21 14 0.70
ACGTcount: A:0.25, C:0.32, G:0.05, T:0.39
Consensus pattern (21 bp):
TCTCCCCCGTTAATCAATAAT
Found at i:1027621 original size:13 final size:13
Alignment explanation
Indices: 1027603--1027627 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1027593 ACTGAAGCAA
1027603 TGTATCGATACAT
1 TGTATCGATACAT
1027616 TGTATCGATACA
1 TGTATCGATACA
1027628 ATTTGGAAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:1030778 original size:34 final size:35
Alignment explanation
Indices: 1030740--1030806 Score: 102
Period size: 37 Copynumber: 1.9 Consensus size: 35
1030730 CCTTACAACA
1030740 CTATC-TTTC-AAGGCTAAGATAGAAACCTCTCTCT
1 CTATCTTTTCAAAGGCTAAGATAG-AACCTCTCTCT
1030774 CTATCTTTTTCAAAGGCTAAGATAGAACCTCTC
1 CTATC-TTTTCAAAGGCTAAGATAGAACCTCTC
1030807 AATCACTTAG
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
34 5 0.17
36 12 0.40
37 13 0.43
ACGTcount: A:0.30, C:0.25, G:0.12, T:0.33
Consensus pattern (35 bp):
CTATCTTTTCAAAGGCTAAGATAGAACCTCTCTCT
Found at i:1031282 original size:13 final size:13
Alignment explanation
Indices: 1031264--1031289 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
1031254 CAATTTTTTG
1031264 TGTATCGATACAT
1 TGTATCGATACAT
1031277 TGTATCGATACAT
1 TGTATCGATACAT
1031290 ACTTGCTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:1031354 original size:21 final size:21
Alignment explanation
Indices: 1031328--1031403 Score: 100
Period size: 21 Copynumber: 3.7 Consensus size: 21
1031318 CTACCAAGAA
*
1031328 ATGTATCGAAACATCTTTTTC
1 ATGTATCGATACATCTTTTTC
****
1031349 ATGTATCGATACAT-TGCAAC
1 ATGTATCGATACATCTTTTTC
1031369 ATGTATCGATACATCTTTTTC
1 ATGTATCGATACATCTTTTTC
1031390 ATGTATCGATACAT
1 ATGTATCGATACAT
1031404 TGCAACATGT
Statistics
Matches: 45, Mismatches: 9, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
20 16 0.36
21 29 0.64
ACGTcount: A:0.30, C:0.18, G:0.12, T:0.39
Consensus pattern (21 bp):
ATGTATCGATACATCTTTTTC
Found at i:1031373 original size:20 final size:20
Alignment explanation
Indices: 1031348--1031421 Score: 103
Period size: 20 Copynumber: 3.6 Consensus size: 20
1031338 ACATCTTTTT
1031348 CATGTATCGATACATTGCAA
1 CATGTATCGATACATTGCAA
****
1031368 CATGTATCGATACATCTTTTT
1 CATGTATCGATACAT-TGCAA
1031389 CATGTATCGATACATTGCAA
1 CATGTATCGATACATTGCAA
1031409 CATGTATCGATAC
1 CATGTATCGATAC
1031422 TTTGAATTGT
Statistics
Matches: 45, Mismatches: 8, Indels: 2
0.82 0.15 0.04
Matches are distributed among these distances:
20 29 0.64
21 16 0.36
ACGTcount: A:0.31, C:0.20, G:0.14, T:0.35
Consensus pattern (20 bp):
CATGTATCGATACATTGCAA
Found at i:1031385 original size:41 final size:41
Alignment explanation
Indices: 1031328--1031421 Score: 179
Period size: 41 Copynumber: 2.3 Consensus size: 41
1031318 CTACCAAGAA
*
1031328 ATGTATCGAAACATCTTTTTCATGTATCGATACATTGCAAC
1 ATGTATCGATACATCTTTTTCATGTATCGATACATTGCAAC
1031369 ATGTATCGATACATCTTTTTCATGTATCGATACATTGCAAC
1 ATGTATCGATACATCTTTTTCATGTATCGATACATTGCAAC
1031410 ATGTATCGATAC
1 ATGTATCGATAC
1031422 TTTGAATTGT
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 52 1.00
ACGTcount: A:0.31, C:0.19, G:0.13, T:0.37
Consensus pattern (41 bp):
ATGTATCGATACATCTTTTTCATGTATCGATACATTGCAAC
Found at i:1032614 original size:13 final size:13
Alignment explanation
Indices: 1032596--1032620 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1032586 ATATTGCACA
1032596 GTATCGATACATT
1 GTATCGATACATT
1032609 GTATCGATACAT
1 GTATCGATACAT
1032621 GACCAAATAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
GTATCGATACATT
Found at i:1032738 original size:13 final size:13
Alignment explanation
Indices: 1032720--1032745 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
1032710 TACACACAAG
1032720 ATGTATCGATACA
1 ATGTATCGATACA
1032733 ATGTATCGATACA
1 ATGTATCGATACA
1032746 TCCCAAAATG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:1032762 original size:33 final size:32
Alignment explanation
Indices: 1032702--1032765 Score: 101
Period size: 33 Copynumber: 2.0 Consensus size: 32
1032692 CTTAACTGTT
*
1032702 TGTATCGATACACACAAGATGTATCGATACAA
1 TGTATCGATACACACAAAATGTATCGATACAA
*
1032734 TGTATCGATACATCCCAAAATGTATCGATACA
1 TGTATCGATACA-CACAAAATGTATCGATACA
1032766 TTAGCTTGTA
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
32 12 0.41
33 17 0.59
ACGTcount: A:0.39, C:0.20, G:0.14, T:0.27
Consensus pattern (32 bp):
TGTATCGATACACACAAAATGTATCGATACAA
Found at i:1037762 original size:164 final size:164
Alignment explanation
Indices: 1037154--1037795 Score: 667
Period size: 164 Copynumber: 3.9 Consensus size: 164
1037144 TTTGAATATC
* * * ** * * *
1037154 AAAATTCTTTAAATATCATCATTTAATTCGCATTAAATCAGTTTT-AAAAATTC-TTTTTATTTC
1 AAAATTCATCAAATATCATCATTTGATTCATAGTAAATCAATTTTGAAAAATTCATTTAT-TTTC
* * * * * * *
1037217 ATGAA-TTTTTCATTTTTTTCTTGAAATGTTCTTATTTTTGAAATATAGAGTTTTATACTCTGA-
65 AT-AAGCTTTTCATTTTTTT-TTGAAATCTTCCTATTTCTAAAATACAGAGTTTTATACTC-CAT
* * *
1037280 AAATGTTTTCGGAGGGATTTTTCATGGTTTATAATTTTT
127 AAATATTTTCAG-GGGATTTTTCTTGGTTTATAATTTTT
* * * * *
1037319 AAAATTTATCAAATATCATCATTAGATTCATAGTAAATCCATTTTGAAAAATTTATTTCTTTTCA
1 AAAATTCATCAAATATCATCATTTGATTCATAGTAAATCAATTTTGAAAAATTCATTTATTTTCA
* * * *
1037384 TACGCTTTTCA-TTTTTTTTGAAACTCTT-ATATTTCTAAAATACAGAGTTTTTTACACCATAAA
66 TAAGCTTTTCATTTTTTTTTGAAA-TCTTCCTATTTCTAAAATACAGAGTTTTATACTCCATAAA
1037447 TATTTTCGAGGGGATTTTTCTTGGTTTAT-ATTTTT
130 TATTTTC-AGGGGATTTTTCTTGGTTTATAATTTTT
* * * ** *
1037482 AAAATTCATCAAATATCATCATTTGATTCGTAGGAAATCAGTTTTGAAATTTTCATTTATTTGCA
1 AAAATTCATCAAATATCATCATTTGATTCATAGTAAATCAATTTTGAAAAATTCATTTATTTTCA
* * * * *
1037547 TAAGTTTTTCATTTTTTATTTGAAA--TTCTCTTTTTTTGAAATACAGAGTTTTATACTCTATAA
66 TAAGCTTTTCATTTTTT-TTTGAAATCTTC-CTATTTCTAAAATACAGAGTTTTATACTCCATAA
1037610 ATATTTTCAGGGGATTTTTCTTGGTTTATAATTTTT
129 ATATTTTCAGGGGATTTTTCTTGGTTTATAATTTTT
*
1037646 AAAATTCATCAAATATCATCATTTGATTCATACTAAATCAATTTTGAAAAATTCATTTATTTTCA
1 AAAATTCATCAAATATCATCATTTGATTCATAGTAAATCAATTTTGAAAAATTCATTTATTTTCA
* * * * ** * *
1037711 TAAG-TTTTCATTTTTTCTTTGAAAT-TTCCCTCTCTCCAAAAAATTGAGTTTTCTATTCCATAA
66 TAAGCTTTTCATTTTTT-TTTGAAATCTT-CCTATTTCTAAAATACAGAGTTTTATACTCCATAA
*
1037774 ATATTCTTAAGGGGATTTTTCT
129 ATATT-TTCAGGGGATTTTTCT
1037796 CGATTTAAAC
Statistics
Matches: 398, Mismatches: 65, Indels: 28
0.81 0.13 0.06
Matches are distributed among these distances:
162 2 0.01
163 110 0.28
164 194 0.49
165 69 0.17
166 19 0.05
167 4 0.01
ACGTcount: A:0.31, C:0.12, G:0.09, T:0.49
Consensus pattern (164 bp):
AAAATTCATCAAATATCATCATTTGATTCATAGTAAATCAATTTTGAAAAATTCATTTATTTTCA
TAAGCTTTTCATTTTTTTTTGAAATCTTCCTATTTCTAAAATACAGAGTTTTATACTCCATAAAT
ATTTTCAGGGGATTTTTCTTGGTTTATAATTTTT
Found at i:1037762 original size:328 final size:328
Alignment explanation
Indices: 1037154--1037795 Score: 831
Period size: 328 Copynumber: 2.0 Consensus size: 328
1037144 TTTGAATATC
* * **
1037154 AAAATTCTTTAAATATCATCATTTAATTCGCATTAAATCAGTTTTAAAAATTCTTTTTATTTCAT
1 AAAATTCATCAAATATCATCATTTAATTCGCAGGAAATCAGTTTTAAAAATTCTTTTTATTTCAT
*
1037219 GAATTTTTCATTTTTTTCTTGAAATGTTCTTATTTTTGAAATATAGAGTTTTATACTCTGAAAAT
66 GAATTTTTCATTTTTTTCTTGAAATGTTCTTATTTTTGAAATACAGAGTTTTATACTCTGAAAAT
* * *
1037284 GTTTTCGGAGGGATTTTTCATGGTTTATAATTTTTAAAATTTATCAAATATCATCATTAGATTCA
131 ATTTTCAGAGGGATTTTTCATGGTTTATAATTTTTAAAATTCATCAAATATCATCATTAGATTCA
* * * * *
1037349 TAGTAAATCCATTTTGAAAAATTTATTTCTTTTCATACGCTTTTCATTTTTTTTGAAACTCTTAT
196 TACTAAATCAATTTTGAAAAATTCATTTATTTTCATAAGCTTTTCATTTTTTTTGAAACTCTTAT
* * * * *
1037414 ATTTCTAAAATACAGAGTTTTTTACACCATAAATATT-TTCGAGGGGATTTTTCTTGGTTTATAT
261 ATCTCCAAAAAACAGAGTTTTCTACACCATAAATATTCTT-AAGGGGATTTTTCTTGGTTTATAT
1037478 TTTT
325 TTTT
* * *
1037482 AAAATTCATCAAATATCATCATTTGATTCGTAGGAAATCAGTTTT-GAAATT-TTCATTTATTTG
1 AAAATTCATCAAATATCATCATTTAATTCGCAGGAAATCAGTTTTAAAAATTCTT--TTTATTT-
1037545 CAT-AAGTTTTTCATTTTTTAT-TTGAAAT-TCTCTT-TTTTTGAAATACAGAGTTTTATACTCT
63 CATGAA-TTTTTCATTTTTT-TCTTGAAATGT-TCTTATTTTTGAAATACAGAGTTTTATACTCT
*
1037606 -ATAAATATTTTCAG-GGGATTTTTCTTGGTTTATAATTTTTAAAATTCATCAAATATCATCATT
125 GA-AAATATTTTCAGAGGGATTTTTCATGGTTTATAATTTTTAAAATTCATCAAATATCATCATT
*
1037669 TGATTCATACTAAATCAATTTTGAAAAATTCATTTATTTTCATAAG-TTTTCATTTTTTCTTTGA
189 AGATTCATACTAAATCAATTTTGAAAAATTCATTTATTTTCATAAGCTTTTCA-TTTTT-TTTGA
* * ** **
1037733 AA-T-TTCCCTCTCTCCAAAAAATTGAGTTTTCTATTCCATAAATATTCTTAAGGGGATTTTTCT
252 AACTCTT--ATATCTCCAAAAAACAGAGTTTTCTACACCATAAATATTCTTAAGGGGATTTTTCT
1037796 CGATTTAAAC
Statistics
Matches: 273, Mismatches: 29, Indels: 24
0.84 0.09 0.07
Matches are distributed among these distances:
326 10 0.04
327 99 0.36
328 134 0.49
329 29 0.11
330 1 0.00
ACGTcount: A:0.31, C:0.12, G:0.09, T:0.49
Consensus pattern (328 bp):
AAAATTCATCAAATATCATCATTTAATTCGCAGGAAATCAGTTTTAAAAATTCTTTTTATTTCAT
GAATTTTTCATTTTTTTCTTGAAATGTTCTTATTTTTGAAATACAGAGTTTTATACTCTGAAAAT
ATTTTCAGAGGGATTTTTCATGGTTTATAATTTTTAAAATTCATCAAATATCATCATTAGATTCA
TACTAAATCAATTTTGAAAAATTCATTTATTTTCATAAGCTTTTCATTTTTTTTGAAACTCTTAT
ATCTCCAAAAAACAGAGTTTTCTACACCATAAATATTCTTAAGGGGATTTTTCTTGGTTTATATT
TTT
Found at i:1039419 original size:3 final size:3
Alignment explanation
Indices: 1039411--1039466 Score: 112
Period size: 3 Copynumber: 18.7 Consensus size: 3
1039401 TTTAGAAATA
1039411 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1039459 AAT AAT AA
1 AAT AAT AA
1039467 ATAAACAAAT
Statistics
Matches: 53, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 53 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:1040591 original size:147 final size:147
Alignment explanation
Indices: 1040314--1040663 Score: 436
Period size: 147 Copynumber: 2.4 Consensus size: 147
1040304 CATAGGTTTG
* * * * * *
1040314 CTTTTCCTTTTTAAGTCCTTTAAGGTTATCGAGATACTTTAATGTCGAAGGTATACCCATGGGGA
1 CTTTT-CTTTTTAAGTCCTTTAGGGTTATCGAGATACTTTCATGTTGAAAGTATACCCA-GCGAA
*
1040379 TATTTTCATAATTTTTTTAGAATCGAGTCCTAATTTGTCACCAGCTCACTTCTATGCTAAAGGTA
64 TATTTTCATAATTTTTTTAGAATCGAGTCCTAATTTATCACCAGCTCACTTCTATGCTAAAGGTA
*
1040444 CGTAGTAGGTGTAAGTTCA
129 CATAGTAGGTGTAAGTTCA
* * * *
1040463 CTTTTCTTTTTTAAGTCTTTTAGGGTTACCAAGATATTTTCATGTTGAAAGTATACCCA-CGAAT
1 CTTTTC-TTTTTAAGTCCTTTAGGGTTATCGAGATACTTTCATGTTGAAAGTATACCCAGCGAAT
* * * * *
1040527 ATTTTCATAATTTTTTTAGAATCGAGTCCTAATTTATCATCGGGTCGCTTCTATGC-ATAGGGTA
65 ATTTTCATAATTTTTTTAGAATCGAGTCCTAATTTATCACCAGCTCACTTCTATGCTA-AAGGTA
* * **
1040591 CATATTAGGTGTAGGTTTG
129 CATAGTAGGTGTAAGTTCA
*
1040610 CTTTTCCTTTTAAGTCCTTTAGGGTTATCGAGATACTTTCATGTT-AAAGATATA
1 CTTTTCTTTTTAAGTCCTTTAGGGTTATCGAGATACTTTCATGTTGAAAG-TATA
1040664 TCTATAGAGG
Statistics
Matches: 172, Mismatches: 26, Indels: 9
0.83 0.13 0.04
Matches are distributed among these distances:
145 4 0.02
146 39 0.23
147 79 0.46
148 1 0.01
149 49 0.28
ACGTcount: A:0.26, C:0.15, G:0.17, T:0.41
Consensus pattern (147 bp):
CTTTTCTTTTTAAGTCCTTTAGGGTTATCGAGATACTTTCATGTTGAAAGTATACCCAGCGAATA
TTTTCATAATTTTTTTAGAATCGAGTCCTAATTTATCACCAGCTCACTTCTATGCTAAAGGTACA
TAGTAGGTGTAAGTTCA
Found at i:1040737 original size:148 final size:145
Alignment explanation
Indices: 1040101--1040753 Score: 482
Period size: 148 Copynumber: 4.4 Consensus size: 145
1040091 TTTGTAAATA
* * * * * * **
1040101 TTTTAGAATTGAGTCATAATTTGTGACCAAGT-AGCTTCTATACCAAGGGTACGTATTAGGCATA
1 TTTTAGAATCGAGTCCTAATTTGTCACTAGGTCA-CTTCTAT-GCAAGGGTACGTATTAGGTGTA
* * * * * *
1040165 GGTTCGC-TTT--TTTTAAGTCC-TTGGGGTTACTGGA-ATACTTGCATGTTGAAGGTATACTCA
64 GGTTTGCTTTTCCTTTTAAGTCCTTTAGGGTTA-TCGAGATACTTTCATGTT-AAAGTATACCCA
* **
1040225 TAGGGGTATTTTTGTAATTT
127 T-GAGGTATTTTCATAATTT
** * * * * * * * * * *
1040245 TACTAAAACCAAG-CTTAATTTGTCAC-CGAGTCGCTTCTATACCGAGGGTATGTATTA-GTCAT
1 TTTTAGAATCGAGTCCTAATTTGTCACTAG-GTCACTTCTAT-GCAAGGGTACGTATTAGGT-GT
* * * *
1040307 AGGTTTGCTTTTCCTTTTTAAGTCCTTTAAGGTTATCGAGATACTTTAATGTCGAAGGTATACCC
63 AGGTTTGCTTTTCC-TTTTAAGTCCTTTAGGGTTATCGAGATACTTTCATGT-TAAAGTATACCC
*
1040372 ATGGGGATATTTTCATAATTT
126 ATGAGG-TATTTTCATAATTT
* * * * *
1040393 TTTTAGAATCGAGTCCTAATTTGTCACCAGCTCACTTCTATGCTAAAGGTACGTAGTAGGTGTAA
1 TTTTAGAATCGAGTCCTAATTTGTCACTAGGTCACTTCTATGC-AAGGGTACGTATTAGGTGTAG
** * * * * * *
1040458 GTTCACTTTTCTTTTTTAAGTCTTTTAGGGTTACCAAGATATTTTCATGTTGAAAGTATACCCAC
65 GTTTGCTTTTC-CTTTTAAGTCCTTTAGGGTTATCGAGATACTTTCATGTT-AAAGTATACCCAT
*
1040523 GA-ATATTTTCATAATTT
128 GAGGTATTTTCATAATTT
* * * *
1040540 TTTTAGAATCGAGTCCTAATTTATCA-TCGGGTCGCTTCTATGCATAGGGTACATATTAGGTGTA
1 TTTTAGAATCGAGTCCTAATTTGTCACT-AGGTCACTTCTATGCA-AGGGTACGTATTAGGTGTA
* *
1040604 GGTTTGCTTTTCCTTTTAAGTCCTTTAGGGTTATCGAGATACTTTCATGTTAAAGATATATCTAT
64 GGTTTGCTTTTCCTTTTAAGTCCTTTAGGGTTATCGAGATACTTTCATGTTAAAG-TATACCCAT
**
1040669 AGAGGTATTTTTGTAATTT
128 -GAGGTATTTTCATAATTT
* * * * * * * *
1040688 TCTTAGAATAGATTACTAATTTGTTACTAGGTCATTTTTATGTCAAGGGTACGTATTAGGCGTAG
1 TTTTAGAATCGAGTCCTAATTTGTCACTAGGTCACTTCTATG-CAAGGGTACGTATTAGGTGTAG
1040753 G
65 G
1040754 CTCTTTTTTA
Statistics
Matches: 397, Mismatches: 88, Indels: 44
0.75 0.17 0.08
Matches are distributed among these distances:
142 1 0.00
143 44 0.11
144 10 0.03
145 4 0.01
146 41 0.10
147 95 0.24
148 111 0.28
149 88 0.22
150 3 0.01
ACGTcount: A:0.26, C:0.14, G:0.19, T:0.40
Consensus pattern (145 bp):
TTTTAGAATCGAGTCCTAATTTGTCACTAGGTCACTTCTATGCAAGGGTACGTATTAGGTGTAGG
TTTGCTTTTCCTTTTAAGTCCTTTAGGGTTATCGAGATACTTTCATGTTAAAGTATACCCATGAG
GTATTTTCATAATTT
Found at i:1042186 original size:19 final size:20
Alignment explanation
Indices: 1042143--1042195 Score: 90
Period size: 19 Copynumber: 2.7 Consensus size: 20
1042133 TTGCCAATTT
1042143 CATGTATCGATACAATTGAG
1 CATGTATCGATACAATTGAG
*
1042163 TATGTATCGATACAA-TGAG
1 CATGTATCGATACAATTGAG
1042182 CATGTATCGATACA
1 CATGTATCGATACA
1042196 TTGTATCGAT
Statistics
Matches: 31, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
19 17 0.55
20 14 0.45
ACGTcount: A:0.36, C:0.15, G:0.19, T:0.30
Consensus pattern (20 bp):
CATGTATCGATACAATTGAG
Found at i:1045207 original size:21 final size:22
Alignment explanation
Indices: 1045183--1045231 Score: 59
Period size: 21 Copynumber: 2.4 Consensus size: 22
1045173 ATCTGAAAAA
*
1045183 TGAAAAATTAAAA-AATAAATT
1 TGAAAAATGAAAATAATAAATT
*
1045204 TG-AAAATGAAAATAATGAATT
1 TGAAAAATGAAAATAATAAATT
1045225 T-AAAAAT
1 TGAAAAAT
1045232 ATAATTTGAA
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
20 9 0.38
21 15 0.62
ACGTcount: A:0.63, C:0.00, G:0.08, T:0.29
Consensus pattern (22 bp):
TGAAAAATGAAAATAATAAATT
Found at i:1050260 original size:13 final size:13
Alignment explanation
Indices: 1050242--1050276 Score: 56
Period size: 13 Copynumber: 2.8 Consensus size: 13
1050232 GATAAAGTGT
1050242 TTAAAAAAAAAAA
1 TTAAAAAAAAAAA
1050255 TTAAAAAAAAAAA
1 TTAAAAAAAAAAA
1050268 --AAAAAAAAA
1 TTAAAAAAAAA
1050277 TTTAAATGTA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
11 9 0.41
13 13 0.59
ACGTcount: A:0.89, C:0.00, G:0.00, T:0.11
Consensus pattern (13 bp):
TTAAAAAAAAAAA
Found at i:1050305 original size:21 final size:21
Alignment explanation
Indices: 1050281--1050337 Score: 105
Period size: 21 Copynumber: 2.7 Consensus size: 21
1050271 AAAAAATTTA
1050281 AATGTATCGATACATTTGTAG
1 AATGTATCGATACATTTGTAG
*
1050302 AATGTATCGATACATTTGTGG
1 AATGTATCGATACATTTGTAG
1050323 AATGTATCGATACAT
1 AATGTATCGATACAT
1050338 CCTACAAATG
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 35 1.00
ACGTcount: A:0.33, C:0.11, G:0.19, T:0.37
Consensus pattern (21 bp):
AATGTATCGATACATTTGTAG
Found at i:1050417 original size:19 final size:19
Alignment explanation
Indices: 1050393--1050460 Score: 85
Period size: 19 Copynumber: 3.9 Consensus size: 19
1050383 AATTCAACAA
1050393 TTTGTATCGATACATAAGT
1 TTTGTATCGATACATAAGT
1050412 TTTGTATCGATAC--AA--
1 TTTGTATCGATACATAAGT
1050427 --TGTATCGATACATAAGT
1 TTTGTATCGATACATAAGT
*
1050444 ATTGTATCGATACATAA
1 TTTGTATCGATACATAA
1050461 TTAGCTACTG
Statistics
Matches: 43, Mismatches: 0, Indels: 12
0.78 0.00 0.22
Matches are distributed among these distances:
13 11 0.26
15 2 0.05
17 2 0.05
19 28 0.65
ACGTcount: A:0.35, C:0.12, G:0.15, T:0.38
Consensus pattern (19 bp):
TTTGTATCGATACATAAGT
Found at i:1050432 original size:13 final size:13
Alignment explanation
Indices: 1050414--1050438 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1050404 ACATAAGTTT
1050414 TGTATCGATACAA
1 TGTATCGATACAA
1050427 TGTATCGATACA
1 TGTATCGATACA
1050439 TAAGTATTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:1050436 original size:32 final size:32
Alignment explanation
Indices: 1050395--1050457 Score: 117
Period size: 32 Copynumber: 2.0 Consensus size: 32
1050385 TTCAACAATT
*
1050395 TGTATCGATACATAAGTTTTGTATCGATACAA
1 TGTATCGATACATAAGTATTGTATCGATACAA
1050427 TGTATCGATACATAAGTATTGTATCGATACA
1 TGTATCGATACATAAGTATTGTATCGATACA
1050458 TAATTAGCTA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.35, C:0.13, G:0.16, T:0.37
Consensus pattern (32 bp):
TGTATCGATACATAAGTATTGTATCGATACAA
Found at i:1050518 original size:13 final size:13
Alignment explanation
Indices: 1050500--1050525 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
1050490 CATTTTTCTG
1050500 TGTATCGATACAT
1 TGTATCGATACAT
1050513 TGTATCGATACAT
1 TGTATCGATACAT
1050526 GGATCTTTGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:1050522 original size:33 final size:33
Alignment explanation
Indices: 1050480--1050546 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
1050470 GCCAAGGAAA
***
1050480 TGTATCGATACATTTTTCTGTGTATCGATACAT
1 TGTATCGATACATGGATCTGTGTATCGATACAT
*
1050513 TGTATCGATACATGGATCTTTGTATCGATACAT
1 TGTATCGATACATGGATCTGTGTATCGATACAT
1050546 T
1 T
1050547 TGGAAATTTT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.25, C:0.15, G:0.16, T:0.43
Consensus pattern (33 bp):
TGTATCGATACATGGATCTGTGTATCGATACAT
Found at i:1053133 original size:102 final size:102
Alignment explanation
Indices: 1052873--1053154 Score: 365
Period size: 102 Copynumber: 2.8 Consensus size: 102
1052863 CAAGTTTTCT
* * * * *
1052873 CAATTTTGCATAATCGGGGATACTCCAACCCCGGTTTTACTTCTAAAACATTAATTTTCCACAAT
1 CAATTTTCCATCATCGGGGATACTCCAACCCCGGTTTTATTTCTAAAACATTAATTTTCTATAAT
* * *
1052938 CGGGGACACTCCAACTCCGATTTTATTCTCAGAACAC
66 CGGGGATACTCCAACTCCGATTGTATTCTCAAAACAC
**
1052975 CAATTTTCCA-CAATCGGGGATACTCCAACCCCGGTTTTATTT-TCAAAACACCAATTTTCTATA
1 CAATTTTCCATC-ATCGGGGATACTCCAACCCCGGTTTTATTTCT-AAAACATTAATTTTCTATA
*
1053038 ATCGGGGATACTCCAACTCCGATTGTATT-TCCAAAATAC
64 ATCGGGGATACTCCAACTCCGATTGTATTCT-CAAAACAC
* * * *
1053077 TAATTTTTCATCATCGGGGATACTCCAACCCCGTTTTTATTTCTAAAATATTAA-TTTCTCATAA
1 CAATTTTCCATCATCGGGGATACTCCAACCCCGGTTTTATTTCTAAAACATTAATTTTCT-ATAA
1053141 TCGGGGATACTCCA
65 TCGGGGATACTCCA
1053155 TCCCCGTTAT
Statistics
Matches: 157, Mismatches: 17, Indels: 12
0.84 0.09 0.06
Matches are distributed among these distances:
101 7 0.04
102 148 0.94
103 2 0.01
ACGTcount: A:0.29, C:0.26, G:0.12, T:0.33
Consensus pattern (102 bp):
CAATTTTCCATCATCGGGGATACTCCAACCCCGGTTTTATTTCTAAAACATTAATTTTCTATAAT
CGGGGATACTCCAACTCCGATTGTATTCTCAAAACAC
Found at i:1053151 original size:153 final size:153
Alignment explanation
Indices: 1052873--1053160 Score: 359
Period size: 153 Copynumber: 1.9 Consensus size: 153
1052863 CAAGTTTTCT
* * * *
1052873 CAATTTTGCATAATCGGGGATACTCCAACCCCGGTTTTACTTCTAAAACATTAATTTTCCACAAT
1 CAATTTTGCATAATCGGGGATACTCCAACCCCGATTGTACTTCCAAAACACTAATTTTCCACAAT
* *
1052938 CGGGGACACTCCAACTCCGATTTTATTCTCAGAACACCAATTTTCCACAATCGGGGATACTCCAA
66 CGGGGACACTCCAACCCCGATTTTATTCTCAAAACACCAATTTTCCACAATCGGGGATACTCCAA
1053003 CCCCGGTTTTATTTTCAAAACAC
131 CCCCGGTTTTATTTTCAAAACAC
* * * *
1053026 CAATTTT-CTATAATCGGGGATACTCCAACTCCGATTGTATTTCCAAAATACTAATTTTTCATC-
1 CAATTTTGC-ATAATCGGGGATACTCCAACCCCGATTGTACTTCCAAAACACTAATTTTCCA-CA
* * * ** *
1053089 ATCGGGGATACTCCAACCCCGTTTTTATT-TCTAAAATATTAA-TTTCTCATAATCGGGGATACT
64 ATCGGGGACACTCCAACCCCGATTTTATTCTC-AAAACACCAATTTTC-CACAATCGGGGATACT
*
1053152 CCATCCCCG
127 CCAACCCCG
1053161 TTATTTTCGA
Statistics
Matches: 114, Mismatches: 17, Indels: 8
0.82 0.12 0.06
Matches are distributed among these distances:
152 7 0.06
153 106 0.93
154 1 0.01
ACGTcount: A:0.29, C:0.26, G:0.12, T:0.33
Consensus pattern (153 bp):
CAATTTTGCATAATCGGGGATACTCCAACCCCGATTGTACTTCCAAAACACTAATTTTCCACAAT
CGGGGACACTCCAACCCCGATTTTATTCTCAAAACACCAATTTTCCACAATCGGGGATACTCCAA
CCCCGGTTTTATTTTCAAAACAC
Found at i:1053162 original size:51 final size:50
Alignment explanation
Indices: 1052874--1053160 Score: 308
Period size: 51 Copynumber: 5.6 Consensus size: 50
1052864 AAGTTTTCTC
* * *
1052874 AATTTTGCATAATCGGGGATACTCCAACCCCGGTTTTACTTCTAAAACATT
1 AATTTT-CATAATCGGGGATACTCCAACCCCGATTTTATTTCTAAAACACT
* * * * *
1052925 AATTTTCCACAATCGGGGACACTCCAACTCCGATTTTA-TTCTCAGAACACC
1 AATTTT-CATAATCGGGGATACTCCAACCCCGATTTTATTTCT-AAAACACT
* * *
1052976 AATTTTCCACAATCGGGGATACTCCAACCCCGGTTTTATTT-TCAAAACACC
1 AATTTT-CATAATCGGGGATACTCCAACCCCGATTTTATTTCT-AAAACACT
* * * *
1053027 AATTTTCTATAATCGGGGATACTCCAACTCCGATTGTATTTCCAAAATACT
1 AATTTTC-ATAATCGGGGATACTCCAACCCCGATTTTATTTCTAAAACACT
* * * *
1053078 AATTTTTCATCATCGGGGATACTCCAACCCCGTTTTTATTTCTAAAATATT
1 AA-TTTTCATAATCGGGGATACTCCAACCCCGATTTTATTTCTAAAACACT
*
1053129 AATTTCTCATAATCGGGGATACTCCATCCCCG
1 AATTT-TCATAATCGGGGATACTCCAACCCCG
1053161 TTATTTTCGA
Statistics
Matches: 203, Mismatches: 27, Indels: 12
0.84 0.11 0.05
Matches are distributed among these distances:
50 8 0.04
51 188 0.93
52 7 0.03
ACGTcount: A:0.29, C:0.26, G:0.12, T:0.33
Consensus pattern (50 bp):
AATTTTCATAATCGGGGATACTCCAACCCCGATTTTATTTCTAAAACACT
Found at i:1062707 original size:70 final size:69
Alignment explanation
Indices: 1062581--1062712 Score: 185
Period size: 70 Copynumber: 1.9 Consensus size: 69
1062571 AATCCTTCTT
* * *
1062581 AAGCCCATACAAGTTTGGTGGCACCCTTTCTAAAGCCCACACAAGTCAGAATGCAAACCTTCCTT
1 AAGCCCATACAAGATTGGTGGCACCCTTTCTAAAGCCCACAAAAGTCAGAAGGCAAACCTTCCTT
1062646 GCAA
66 GCAA
* **
1062650 AAGCCCATACACA-ATTGGTGGCGACCCTTTCTAAAGCCCACAAAAGTCGGTGGGCAAACCTTC
1 AAGCCCATACA-AGATTGGTGGC-ACCCTTTCTAAAGCCCACAAAAGTCAGAAGGCAAACCTTC
1062713 TTCAAATCCC
Statistics
Matches: 55, Mismatches: 6, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
69 19 0.35
70 36 0.65
ACGTcount: A:0.31, C:0.30, G:0.18, T:0.20
Consensus pattern (69 bp):
AAGCCCATACAAGATTGGTGGCACCCTTTCTAAAGCCCACAAAAGTCAGAAGGCAAACCTTCCTT
GCAA
Found at i:1133307 original size:51 final size:51
Alignment explanation
Indices: 1133251--1133383 Score: 194
Period size: 51 Copynumber: 2.6 Consensus size: 51
1133241 TGATTGATTA
* * * *
1133251 TATCGATACAATATTCATTGTATCGATACATACTGGGTTTTTACCTAGATG
1 TATCGATACATTATTCATTGTATCGATACATACTAGATTTTTACCCAGATG
* *
1133302 TATCGATACATTTTTCATTGTATCGATACATTCTAGATTTTTACCCAGATG
1 TATCGATACATTATTCATTGTATCGATACATACTAGATTTTTACCCAGATG
* *
1133353 TATCGATACATTATTCAATATATCGATACAT
1 TATCGATACATTATTCATTGTATCGATACAT
1133384 GTAGGCAAAT
Statistics
Matches: 73, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
51 73 1.00
ACGTcount: A:0.31, C:0.17, G:0.12, T:0.41
Consensus pattern (51 bp):
TATCGATACATTATTCATTGTATCGATACATACTAGATTTTTACCCAGATG
Found at i:1138005 original size:33 final size:32
Alignment explanation
Indices: 1137944--1138005 Score: 79
Period size: 33 Copynumber: 1.9 Consensus size: 32
1137934 ATTTACTATA
**
1137944 TATCGATACCAAGAACATGTATTGATACAATG
1 TATCGATACCAAGAACATGTATCAATACAATG
* *
1137976 TATCGATACTAAGCAATATGTATCAATACA
1 TATCGATACCAAG-AACATGTATCAATACA
1138006 TCTGTGCGTG
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
32 12 0.48
33 13 0.52
ACGTcount: A:0.42, C:0.16, G:0.13, T:0.29
Consensus pattern (32 bp):
TATCGATACCAAGAACATGTATCAATACAATG
Found at i:1138400 original size:18 final size:18
Alignment explanation
Indices: 1138364--1138400 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
1138354 TTTTTGTGCC
*
1138364 TTATAGGATTCACAGGCT
1 TTATAGGATTCACAAGCT
*
1138382 TTATAGGATTCATAAGCT
1 TTATAGGATTCACAAGCT
1138400 T
1 T
1138401 AGTGAAATAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.30, C:0.14, G:0.19, T:0.38
Consensus pattern (18 bp):
TTATAGGATTCACAAGCT
Found at i:1148774 original size:28 final size:28
Alignment explanation
Indices: 1148697--1148783 Score: 69
Period size: 26 Copynumber: 3.3 Consensus size: 28
1148687 AAATTTTTAG
* * * *
1148697 TTTTTAATA-TTTAAATATAAAATAATA
1 TTTTAAATATTTTAAAGATTAAATAAAA
* *
1148724 TATTTCAATATTTT---GATTGAATAAAA
1 T-TTTAAATATTTTAAAGATTAAATAAAA
1148750 TTTTAAATATTTTAAAGATTAAAT-AAA
1 TTTTAAATATTTTAAAGATTAAATAAAA
1148777 -TTTAAAT
1 TTTTAAAT
1148784 TATATACCAA
Statistics
Matches: 48, Mismatches: 7, Indels: 11
0.73 0.11 0.17
Matches are distributed among these distances:
25 11 0.23
26 16 0.33
27 4 0.08
28 14 0.29
29 3 0.06
ACGTcount: A:0.48, C:0.01, G:0.03, T:0.47
Consensus pattern (28 bp):
TTTTAAATATTTTAAAGATTAAATAAAA
Found at i:1150995 original size:28 final size:27
Alignment explanation
Indices: 1150937--1151006 Score: 83
Period size: 28 Copynumber: 2.7 Consensus size: 27
1150927 TTTTGATATT
*
1150937 ATAATATTATTT--GAT-TTATATTAA
1 ATAATATTATTTAATATATTATATTAA
1150961 ATAATATTATTTAATATATTATATTTAA
1 ATAATATTATTTAATATATTATA-TTAA
* *
1150989 ATAATATCAATTAATATA
1 ATAATATTATTTAATATA
1151007 ATTTTCATAT
Statistics
Matches: 39, Mismatches: 3, Indels: 4
0.85 0.07 0.09
Matches are distributed among these distances:
24 12 0.31
26 2 0.05
27 5 0.13
28 20 0.51
ACGTcount: A:0.47, C:0.01, G:0.01, T:0.50
Consensus pattern (27 bp):
ATAATATTATTTAATATATTATATTAA
Found at i:1152542 original size:55 final size:55
Alignment explanation
Indices: 1152464--1152576 Score: 199
Period size: 55 Copynumber: 2.1 Consensus size: 55
1152454 CTTAAACATC
* *
1152464 AAATTTAATTAGATCTATATTCATAATGCAGGCAATATTTTCTTTTTAACATGGT
1 AAATTTAATTAGATCTATATTCATAATGAAGGCAATATTTTCTTTTTAACATGAT
*
1152519 AAATTTAATTAGATCTATGTTCATAATGAAGGCAATATTTTCTTTTTAACATGAT
1 AAATTTAATTAGATCTATATTCATAATGAAGGCAATATTTTCTTTTTAACATGAT
1152574 AAA
1 AAA
1152577 CTTTTATTTC
Statistics
Matches: 55, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
55 55 1.00
ACGTcount: A:0.37, C:0.10, G:0.11, T:0.42
Consensus pattern (55 bp):
AAATTTAATTAGATCTATATTCATAATGAAGGCAATATTTTCTTTTTAACATGAT
Found at i:1153517 original size:12 final size:12
Alignment explanation
Indices: 1153500--1153525 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
1153490 GTTCATGATT
1153500 GGGATCACGATC
1 GGGATCACGATC
1153512 GGGATCACGATC
1 GGGATCACGATC
1153524 GG
1 GG
1153526 TTCCTTCTAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.23, C:0.23, G:0.38, T:0.15
Consensus pattern (12 bp):
GGGATCACGATC
Found at i:1153541 original size:3 final size:3
Alignment explanation
Indices: 1153533--1153566 Score: 68
Period size: 3 Copynumber: 11.3 Consensus size: 3
1153523 CGGTTCCTTC
1153533 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T
1153567 GACAACAATA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (3 bp):
TAA
Found at i:1159280 original size:29 final size:30
Alignment explanation
Indices: 1159233--1159292 Score: 77
Period size: 29 Copynumber: 2.0 Consensus size: 30
1159223 ACCTTAATTT
*
1159233 GAATAATTTAGCGTTTTTAGGATACTTTAG
1 GAATAATTTAGCGATTTTAGGATACTTTAG
* * *
1159263 GAATATTTTAGC-ATTTTAGGCTATTTTAG
1 GAATAATTTAGCGATTTTAGGATACTTTAG
1159292 G
1 G
1159293 GTTAAAGTAT
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
29 15 0.58
30 11 0.42
ACGTcount: A:0.28, C:0.07, G:0.20, T:0.45
Consensus pattern (30 bp):
GAATAATTTAGCGATTTTAGGATACTTTAG
Found at i:1160113 original size:11 final size:11
Alignment explanation
Indices: 1160097--1160122 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
1160087 ATCACATATT
1160097 AAAACTAAATA
1 AAAACTAAATA
1160108 AAAACTAAATA
1 AAAACTAAATA
1160119 AAAA
1 AAAA
1160123 TTAAGCTTTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.77, C:0.08, G:0.00, T:0.15
Consensus pattern (11 bp):
AAAACTAAATA
Found at i:1160959 original size:2 final size:2
Alignment explanation
Indices: 1160948--1161005 Score: 109
Period size: 2 Copynumber: 29.5 Consensus size: 2
1160938 GCCTTCTTAG
1160948 TA TA -A TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1160989 TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA T
1161006 GTTTACTAAC
Statistics
Matches: 55, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
1 1 0.02
2 54 0.98
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Done.