Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold17
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 1562583
ACGTcount: A:0.27, C:0.15, G:0.15, T:0.27
Warning! 255143 characters in sequence are not A, C, G, or T
File 9 of 9
Found at i:1456240 original size:21 final size:21
Alignment explanation
Indices: 1456214--1456289 Score: 91
Period size: 21 Copynumber: 3.7 Consensus size: 21
1456204 CTGCCAAGAA
*
1456214 ATGTATCGATACATCTTTTTT
1 ATGTATCGATACATCTTTTTC
****
1456235 ATGTATCGATACAT-TGCAAC
1 ATGTATCGATACATCTTTTTC
*
1456255 ATGTATCGATACTTCTTTTTC
1 ATGTATCGATACATCTTTTTC
1456276 ATGTATCGATACAT
1 ATGTATCGATACAT
1456290 TGCAACATGT
Statistics
Matches: 43, Mismatches: 11, Indels: 2
0.77 0.20 0.04
Matches are distributed among these distances:
20 14 0.33
21 29 0.67
ACGTcount: A:0.28, C:0.17, G:0.12, T:0.43
Consensus pattern (21 bp):
ATGTATCGATACATCTTTTTC
Found at i:1456260 original size:20 final size:20
Alignment explanation
Indices: 1456235--1456307 Score: 92
Period size: 20 Copynumber: 3.6 Consensus size: 20
1456225 CATCTTTTTT
1456235 ATGTATCGATACATTGCAAC
1 ATGTATCGATACATTGCAAC
* ****
1456255 ATGTATCGATACTTCTTTTTC
1 ATGTATCGATACAT-TGCAAC
1456276 ATGTATCGATACATTGCAAC
1 ATGTATCGATACATTGCAAC
1456296 ATGTATCGATAC
1 ATGTATCGATAC
1456308 TTTGAATTGT
Statistics
Matches: 42, Mismatches: 10, Indels: 2
0.78 0.19 0.04
Matches are distributed among these distances:
20 27 0.64
21 15 0.36
ACGTcount: A:0.30, C:0.19, G:0.14, T:0.37
Consensus pattern (20 bp):
ATGTATCGATACATTGCAAC
Found at i:1456272 original size:41 final size:41
Alignment explanation
Indices: 1456214--1456309 Score: 174
Period size: 41 Copynumber: 2.3 Consensus size: 41
1456204 CTGCCAAGAA
* *
1456214 ATGTATCGATACATCTTTTTTATGTATCGATACATTGCAAC
1 ATGTATCGATACTTCTTTTTCATGTATCGATACATTGCAAC
1456255 ATGTATCGATACTTCTTTTTCATGTATCGATACATTGCAAC
1 ATGTATCGATACTTCTTTTTCATGTATCGATACATTGCAAC
1456296 ATGTATCGATACTT
1 ATGTATCGATACTT
1456310 TGAATTGTGT
Statistics
Matches: 53, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
41 53 1.00
ACGTcount: A:0.28, C:0.18, G:0.12, T:0.42
Consensus pattern (41 bp):
ATGTATCGATACTTCTTTTTCATGTATCGATACATTGCAAC
Found at i:1458810 original size:13 final size:13
Alignment explanation
Indices: 1458792--1458829 Score: 67
Period size: 13 Copynumber: 2.9 Consensus size: 13
1458782 ATAAACACCC
1458792 TGTATCGATACAG
1 TGTATCGATACAG
*
1458805 TGTATCGATACAT
1 TGTATCGATACAG
1458818 TGTATCGATACA
1 TGTATCGATACA
1458830 AATAAAAATG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 24 1.00
ACGTcount: A:0.32, C:0.16, G:0.18, T:0.34
Consensus pattern (13 bp):
TGTATCGATACAG
Found at i:1460929 original size:15 final size:15
Alignment explanation
Indices: 1460909--1460939 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
1460899 ATTTCGTTTG
*
1460909 GAGCTTCTTCATTTT
1 GAGCTTCCTCATTTT
1460924 GAGCTTCCTCATTTT
1 GAGCTTCCTCATTTT
1460939 G
1 G
1460940 GACATTTTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.13, C:0.23, G:0.16, T:0.48
Consensus pattern (15 bp):
GAGCTTCCTCATTTT
Found at i:1464268 original size:11 final size:11
Alignment explanation
Indices: 1464252--1464276 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
1464242 TCTGATACCA
1464252 ATTGAAAGCTT
1 ATTGAAAGCTT
1464263 ATTGAAAGCTT
1 ATTGAAAGCTT
1464274 ATT
1 ATT
1464277 AACGAACCAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.36, C:0.08, G:0.16, T:0.40
Consensus pattern (11 bp):
ATTGAAAGCTT
Found at i:1465036 original size:13 final size:13
Alignment explanation
Indices: 1465018--1465043 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
1465008 CAATTTTTTG
1465018 TGTATCGATACAT
1 TGTATCGATACAT
1465031 TGTATCGATACAT
1 TGTATCGATACAT
1465044 ACTTGCTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:1465108 original size:21 final size:21
Alignment explanation
Indices: 1465082--1465157 Score: 100
Period size: 21 Copynumber: 3.7 Consensus size: 21
1465072 CTGCCAAGAA
*
1465082 ATGTATCGATACATCTTTTTT
1 ATGTATCGATACATCTTTTTC
****
1465103 ATGTATCGATACAT-TGCAAC
1 ATGTATCGATACATCTTTTTC
1465123 ATGTATCGATACATCTTTTTC
1 ATGTATCGATACATCTTTTTC
1465144 ATGTATCGATACAT
1 ATGTATCGATACAT
1465158 TGCAACATGT
Statistics
Matches: 45, Mismatches: 9, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
20 15 0.33
21 30 0.67
ACGTcount: A:0.29, C:0.17, G:0.12, T:0.42
Consensus pattern (21 bp):
ATGTATCGATACATCTTTTTC
Found at i:1465128 original size:20 final size:20
Alignment explanation
Indices: 1465103--1465175 Score: 101
Period size: 20 Copynumber: 3.6 Consensus size: 20
1465093 CATCTTTTTT
1465103 ATGTATCGATACATTGCAAC
1 ATGTATCGATACATTGCAAC
****
1465123 ATGTATCGATACATCTTTTTC
1 ATGTATCGATACAT-TGCAAC
1465144 ATGTATCGATACATTGCAAC
1 ATGTATCGATACATTGCAAC
1465164 ATGTATCGATAC
1 ATGTATCGATAC
1465176 TTTGAATTGT
Statistics
Matches: 44, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
20 28 0.64
21 16 0.36
ACGTcount: A:0.32, C:0.19, G:0.14, T:0.36
Consensus pattern (20 bp):
ATGTATCGATACATTGCAAC
Found at i:1465139 original size:41 final size:41
Alignment explanation
Indices: 1465082--1465175 Score: 179
Period size: 41 Copynumber: 2.3 Consensus size: 41
1465072 CTGCCAAGAA
*
1465082 ATGTATCGATACATCTTTTTTATGTATCGATACATTGCAAC
1 ATGTATCGATACATCTTTTTCATGTATCGATACATTGCAAC
1465123 ATGTATCGATACATCTTTTTCATGTATCGATACATTGCAAC
1 ATGTATCGATACATCTTTTTCATGTATCGATACATTGCAAC
1465164 ATGTATCGATAC
1 ATGTATCGATAC
1465176 TTTGAATTGT
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 52 1.00
ACGTcount: A:0.30, C:0.18, G:0.13, T:0.39
Consensus pattern (41 bp):
ATGTATCGATACATCTTTTTCATGTATCGATACATTGCAAC
Found at i:1470601 original size:13 final size:13
Alignment explanation
Indices: 1470583--1470622 Score: 71
Period size: 13 Copynumber: 3.1 Consensus size: 13
1470573 ACAATGTTTT
1470583 TTGTATCGATACA
1 TTGTATCGATACA
1470596 TTGTATCGATACA
1 TTGTATCGATACA
*
1470609 ATGTATCGATACA
1 TTGTATCGATACA
1470622 T
1 T
1470623 GGGTTACTAT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
13 25 1.00
ACGTcount: A:0.33, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:1470741 original size:10 final size:11
Alignment explanation
Indices: 1470712--1470739 Score: 56
Period size: 11 Copynumber: 2.5 Consensus size: 11
1470702 AAACCCTAAC
1470712 AATTTTTCTGA
1 AATTTTTCTGA
1470723 AATTTTTCTGA
1 AATTTTTCTGA
1470734 AATTTT
1 AATTTT
1470740 CTTAAAATTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.29, C:0.07, G:0.07, T:0.57
Consensus pattern (11 bp):
AATTTTTCTGA
Found at i:1471627 original size:165 final size:164
Alignment explanation
Indices: 1471267--1471657 Score: 457
Period size: 164 Copynumber: 2.4 Consensus size: 164
1471257 TGAAATAACT
* * * * * * ** * *
1471267 TGAATTTTTCAAAACTAATTTAATGTGAATTTAATGACAATATTAGATGAATTTTAAAAGTTTAA
1 TGAATTTTTGAAAACTAATTTAATATGAAATAAATAATAATATTTCATGAATTTTAAAAATTAAA
** * * * * *
1471332 AACCAAGAAAAACCCCTCCGAAAACATTTACGGAATAGAAAACTCGATTTTGTAGAAATAAAGAA
66 AACCAAGAAAAACCCCTCAAAAAAAATTTACGGAATAAAAAAATCGATTTTGCAAAAATAAAGAA
* *
1471397 ATTTTAAGGAAAATGAAAAACTCATGAAAATGAA
131 ATTTCAAGGAAAATAAAAAACTCATGAAAATGAA
1471431 TGAATTTTTGAAAACTAATTTAATATGAAATAAATAATAATATTTCATGAATTTTAAAAATTAAA
1 TGAATTTTTGAAAACTAATTTAATATGAAATAAATAATAATATTTCATGAATTTTAAAAATTAAA
* * * *
1471496 AACCAAGAAAAATCCC-CAAAAAAAATTTTACGGATTAAAAAAATCGGTATTT-CAAAAAT-AGG
66 AACCAAGAAAAACCCCTCAAAAAAAA-TTTACGGAATAAAAAAATCGAT-TTTGCAAAAATAAAG
1471558 AGAATTTCAAGGAAAAATAAAAAACTCATGAAAATGAA
129 A-AATTTCAAGG-AAAATAAAAAACTCATGAAAATGAA
* * * * *
1471596 TGAATTTTTTAAATC-AGATTTAATATGAAATAAATAATTATATTTGATGAATTTTTAAAATT
1 TGAATTTTTGAAAACTA-ATTTAATATGAAATAAATAATAATATTTCATGAATTTTAAAAATT
1471658 TTGAACCCAT
Statistics
Matches: 194, Mismatches: 28, Indels: 9
0.84 0.12 0.04
Matches are distributed among these distances:
163 9 0.05
164 103 0.53
165 82 0.42
ACGTcount: A:0.50, C:0.08, G:0.11, T:0.31
Consensus pattern (164 bp):
TGAATTTTTGAAAACTAATTTAATATGAAATAAATAATAATATTTCATGAATTTTAAAAATTAAA
AACCAAGAAAAACCCCTCAAAAAAAATTTACGGAATAAAAAAATCGATTTTGCAAAAATAAAGAA
ATTTCAAGGAAAATAAAAAACTCATGAAAATGAA
Found at i:1474894 original size:3 final size:3
Alignment explanation
Indices: 1474886--1474910 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
1474876 TCATTCGTTT
1474886 TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA T
1474911 GGGTTAGATT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:1477921 original size:12 final size:12
Alignment explanation
Indices: 1477896--1477930 Score: 52
Period size: 12 Copynumber: 2.8 Consensus size: 12
1477886 TGCTTCTTAT
1477896 AATTTTAGAAAAA
1 AATTTTA-AAAAA
1477909 AATTTTAAAAAA
1 AATTTTAAAAAA
*
1477921 AATTGTAAAA
1 AATTTTAAAA
1477931 GCATCAACTA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
12 14 0.67
13 7 0.33
ACGTcount: A:0.63, C:0.00, G:0.06, T:0.31
Consensus pattern (12 bp):
AATTTTAAAAAA
Found at i:1482054 original size:17 final size:17
Alignment explanation
Indices: 1482032--1482065 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
1482022 GATAAAGTGT
1482032 TTGAAAAAAAAAAAAAA
1 TTGAAAAAAAAAAAAAA
1482049 TTGAAAAAAAAAAAAAA
1 TTGAAAAAAAAAAAAAA
1482066 AAAATTTAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.82, C:0.00, G:0.06, T:0.12
Consensus pattern (17 bp):
TTGAAAAAAAAAAAAAA
Found at i:1482098 original size:21 final size:21
Alignment explanation
Indices: 1482074--1482130 Score: 105
Period size: 21 Copynumber: 2.7 Consensus size: 21
1482064 AAAAAATTTA
1482074 AATGTATCGATACATTTGTAG
1 AATGTATCGATACATTTGTAG
*
1482095 AATGTATCGATACATTTGTGG
1 AATGTATCGATACATTTGTAG
1482116 AATGTATCGATACAT
1 AATGTATCGATACAT
1482131 CCTACAAATG
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 35 1.00
ACGTcount: A:0.33, C:0.11, G:0.19, T:0.37
Consensus pattern (21 bp):
AATGTATCGATACATTTGTAG
Found at i:1482210 original size:19 final size:19
Alignment explanation
Indices: 1482186--1482253 Score: 85
Period size: 19 Copynumber: 3.9 Consensus size: 19
1482176 AATTCAACAA
1482186 TTTGTATCGATACATAAGT
1 TTTGTATCGATACATAAGT
1482205 TTTGTATCGATAC--AA--
1 TTTGTATCGATACATAAGT
1482220 --TGTATCGATACATAAGT
1 TTTGTATCGATACATAAGT
*
1482237 ATTGTATCGATACATAA
1 TTTGTATCGATACATAA
1482254 TTAGCTACTG
Statistics
Matches: 43, Mismatches: 0, Indels: 12
0.78 0.00 0.22
Matches are distributed among these distances:
13 11 0.26
15 2 0.05
17 2 0.05
19 28 0.65
ACGTcount: A:0.35, C:0.12, G:0.15, T:0.38
Consensus pattern (19 bp):
TTTGTATCGATACATAAGT
Found at i:1482225 original size:13 final size:13
Alignment explanation
Indices: 1482207--1482231 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1482197 ACATAAGTTT
1482207 TGTATCGATACAA
1 TGTATCGATACAA
1482220 TGTATCGATACA
1 TGTATCGATACA
1482232 TAAGTATTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:1482229 original size:32 final size:32
Alignment explanation
Indices: 1482188--1482250 Score: 117
Period size: 32 Copynumber: 2.0 Consensus size: 32
1482178 TTCAACAATT
*
1482188 TGTATCGATACATAAGTTTTGTATCGATACAA
1 TGTATCGATACATAAGTATTGTATCGATACAA
1482220 TGTATCGATACATAAGTATTGTATCGATACA
1 TGTATCGATACATAAGTATTGTATCGATACA
1482251 TAATTAGCTA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.35, C:0.13, G:0.16, T:0.37
Consensus pattern (32 bp):
TGTATCGATACATAAGTATTGTATCGATACAA
Found at i:1482311 original size:13 final size:13
Alignment explanation
Indices: 1482293--1482318 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
1482283 CATTTTTCTG
1482293 TGTATCGATACAT
1 TGTATCGATACAT
1482306 TGTATCGATACAT
1 TGTATCGATACAT
1482319 GGATCTTTGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:1482315 original size:33 final size:33
Alignment explanation
Indices: 1482273--1482339 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
1482263 GCCAAGGAAA
***
1482273 TGTATCGATACATTTTTCTGTGTATCGATACAT
1 TGTATCGATACATGGATCTGTGTATCGATACAT
*
1482306 TGTATCGATACATGGATCTTTGTATCGATACAT
1 TGTATCGATACATGGATCTGTGTATCGATACAT
1482339 T
1 T
1482340 TGGAAATTTT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.25, C:0.15, G:0.16, T:0.43
Consensus pattern (33 bp):
TGTATCGATACATGGATCTGTGTATCGATACAT
Found at i:1484855 original size:28 final size:27
Alignment explanation
Indices: 1484788--1484860 Score: 94
Period size: 27 Copynumber: 2.7 Consensus size: 27
1484778 CTTCACAATC
* *
1484788 GGGGACACTCCAACCCCGTTAATCATC
1 GGGGATACTCCAACCCCGTTAATCATA
*
1484815 GGGGATACTCCAACCCCGTTATTTC-TGA
1 GGGGATACTCCAACCCCGTTA-ATCAT-A
1484843 GGGGATACTCCAACCCCG
1 GGGGATACTCCAACCCCG
1484861 ACTTTATTTT
Statistics
Matches: 41, Mismatches: 3, Indels: 3
0.87 0.06 0.06
Matches are distributed among these distances:
27 21 0.51
28 20 0.49
ACGTcount: A:0.23, C:0.34, G:0.22, T:0.21
Consensus pattern (27 bp):
GGGGATACTCCAACCCCGTTAATCATA
Found at i:1484905 original size:51 final size:49
Alignment explanation
Indices: 1484843--1485013 Score: 162
Period size: 53 Copynumber: 3.3 Consensus size: 49
1484833 TTATTTCTGA
*
1484843 GGGGATACTCCAACCCCGACTTTATTTTCAAAATATAGATTTTTCATAATC
1 GGGGATACTCCAACCCCGATTTTATTTTCAAAA-ATA-ATTTTTCATAATC
* ** * *
1484894 GGGGATACTCCAACCCCGGTTTTATTTTCACAACACCAATTTCTCCTTTAATC
1 GGGGATACTCCAACCCCGATTTTATTTTCA-AA-AATAATTT-TTC-ATAATC
** * *
1484947 GGGGATACTCCAATTCCGATTTTATTTCCAAAAATACCAATTTTTCACAATC
1 GGGGATACTCCAACCCCGATTTTATTTTCAAAAAT---AATTTTTCATAATC
*
1484999 GAGGATACTCCAACC
1 GGGGATACTCCAACC
1485014 TCGTTATTTC
Statistics
Matches: 95, Mismatches: 18, Indels: 13
0.75 0.14 0.10
Matches are distributed among these distances:
51 33 0.35
52 23 0.24
53 34 0.36
54 5 0.05
ACGTcount: A:0.30, C:0.26, G:0.12, T:0.33
Consensus pattern (49 bp):
GGGGATACTCCAACCCCGATTTTATTTTCAAAAATAATTTTTCATAATC
Found at i:1485032 original size:28 final size:28
Alignment explanation
Indices: 1484996--1485077 Score: 96
Period size: 28 Copynumber: 2.9 Consensus size: 28
1484986 ATTTTTCACA
*
1484996 ATCGAGGATACTCCAACCTCGTTATTTC
1 ATCGGGGATACTCCAACCTCGTTATTTC
* *
1485024 ATCGGGGATACTCCAACCCCGTTACTTC
1 ATCGGGGATACTCCAACCTCGTTATTTC
*
1485052 --CGAGGGAACACTCCAACCTCGTTATT
1 ATCG-GGG-ATACTCCAACCTCGTTATT
1485078 ATCTCCAAAA
Statistics
Matches: 46, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
26 2 0.04
27 3 0.07
28 41 0.89
ACGTcount: A:0.24, C:0.32, G:0.17, T:0.27
Consensus pattern (28 bp):
ATCGGGGATACTCCAACCTCGTTATTTC
Found at i:1493995 original size:13 final size:13
Alignment explanation
Indices: 1493977--1494004 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
1493967 CTGGGGATAG
1493977 TCCAACTTGTTTT
1 TCCAACTTGTTTT
1493990 TCCAACTTGTTTT
1 TCCAACTTGTTTT
1494003 TC
1 TC
1494005 TTACAAAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.14, C:0.25, G:0.07, T:0.54
Consensus pattern (13 bp):
TCCAACTTGTTTT
Found at i:1495084 original size:6 final size:6
Alignment explanation
Indices: 1495069--1495097 Score: 51
Period size: 6 Copynumber: 5.0 Consensus size: 6
1495059 TTTTTAATTA
1495069 AAAAAT -AAAAT AAAAAT AAAAAT AAAAAT
1 AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT
1495098 CTTAAAACTC
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
5 5 0.23
6 17 0.77
ACGTcount: A:0.83, C:0.00, G:0.00, T:0.17
Consensus pattern (6 bp):
AAAAAT
Found at i:1495732 original size:155 final size:155
Alignment explanation
Indices: 1495450--1495741 Score: 368
Period size: 155 Copynumber: 1.9 Consensus size: 155
1495440 ACTTAAAAAG
* * * * * * * *
1495450 GATGAACCTATCCTAAATACCCACCTTCGGCATGAAAGCGGACCCGGTGACAACTTAAGATTTGG
1 GATGAACCTAACCTAAATACCCACCTTCAGCATAAAAGCGGACCCGATGACAACCTAAGAATCGA
* * * *** * * *
1495515 TTCTAAGAAATTACCAAAATGCTGTTAGGTGATACCTTTGACGTAAAAGTACCTGGTACCCCTAA
66 TTCTAAAAAATTACAAAAATACCCCTAGGGGATACCTTCGACGTAAAAGTACCTGATACCCCTAA
*
1495580 AGGACTTAAAGAGGATAATAGATGA
131 AAGACTTAAAGAGGATAATAGATGA
* * * *
1495605 GATGAACCTAACCTATATATCTACCTTCAGCATAAAAGCGGACCCGATGACAACCTAGGAATCGA
1 GATGAACCTAACCTAAATACCCACCTTCAGCATAAAAGCGGACCCGATGACAACCTAAGAATCGA
* *
1495670 TTTTAAAAAATTACAAAAATACCCCTAGGGGATTCCTTCGACGTAAAAGTACCTGATACCCCTAA
66 TTCTAAAAAATTACAAAAATACCCCTAGGGGATACCTTCGACGTAAAAGTACCTGATACCCCTAA
1495735 AAGACTT
131 AAGACTT
1495742 GGGATAATGC
Statistics
Matches: 113, Mismatches: 24, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
155 113 1.00
ACGTcount: A:0.36, C:0.22, G:0.18, T:0.24
Consensus pattern (155 bp):
GATGAACCTAACCTAAATACCCACCTTCAGCATAAAAGCGGACCCGATGACAACCTAAGAATCGA
TTCTAAAAAATTACAAAAATACCCCTAGGGGATACCTTCGACGTAAAAGTACCTGATACCCCTAA
AAGACTTAAAGAGGATAATAGATGA
Found at i:1496200 original size:160 final size:162
Alignment explanation
Indices: 1496021--1496313 Score: 437
Period size: 160 Copynumber: 1.8 Consensus size: 162
1496011 CGAAAGTATT
* *
1496021 AATTCAATATAATTTTATTTATTTTTGAAAATATCATTTCGTACCCTAATAGAAGCCTGAAAGAA
1 AATTCAATATAATTTTATTTATTTTTGAAAATACCATTTCATACCCTAATAGAAGCCTGAAAGAA
* ** * *
1496086 TATG-AAAGGTTTTTGAAATCTTTTATACCTCTACGGATGCCCATAGGAATATAAAAGATTA-AA
66 TACGAAAACATTTTTGAAATCTTTTATACCCCTACGGATGCCCAGAGGAATATAAAAGATTAGAA
1496149 AAATAGATATTAGAATTTATCTCGATAATACC
131 AAATAGATATTAGAATTTATCTCGATAATACC
* * * * * * *
1496181 AATTTAATTTAATTTTATTTATTTTTGAAAATGCCATTTCATACCCTAGTGGAAGCTTGAAAGGA
1 AATTCAATATAATTTTATTTATTTTTGAAAATACCATTTCATACCCTAATAGAAGCCTGAAAGAA
*
1496246 TACGAAAACATTTTTGAAATCTTTTATACCCCTACGGATGCCTAGAGGAATATAAAAGATTAGAA
66 TACGAAAACATTTTTGAAATCTTTTATACCCCTACGGATGCCCAGAGGAATATAAAAGATTAGAA
1496311 AAA
131 AAA
1496314 AATAATTAAA
Statistics
Matches: 116, Mismatches: 15, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
160 59 0.51
161 52 0.45
162 5 0.04
ACGTcount: A:0.39, C:0.13, G:0.13, T:0.35
Consensus pattern (162 bp):
AATTCAATATAATTTTATTTATTTTTGAAAATACCATTTCATACCCTAATAGAAGCCTGAAAGAA
TACGAAAACATTTTTGAAATCTTTTATACCCCTACGGATGCCCAGAGGAATATAAAAGATTAGAA
AAATAGATATTAGAATTTATCTCGATAATACC
Found at i:1496453 original size:14 final size:15
Alignment explanation
Indices: 1496436--1496464 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
1496426 TTTAGATATT
1496436 AATATT-TACATACA
1 AATATTCTACATACA
1496450 AATATTCTACATACA
1 AATATTCTACATACA
1496465 TTTCACAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 6 0.43
15 8 0.57
ACGTcount: A:0.48, C:0.17, G:0.00, T:0.34
Consensus pattern (15 bp):
AATATTCTACATACA
Found at i:1497438 original size:25 final size:22
Alignment explanation
Indices: 1497405--1497459 Score: 65
Period size: 25 Copynumber: 2.4 Consensus size: 22
1497395 AGTTTTTTTA
1497405 TTTTTTTTCTATATTTTCTTCTAC
1 TTTTTTTTCTATATTTTC-TCT-C
* *
1497429 TTTTTCTTTCTCTCTTTTCTCTC
1 TTTTT-TTTCTATATTTTCTCTC
1497452 TTTTTTTT
1 TTTTTTTT
1497460 TTGCTGAACT
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
22 3 0.11
23 6 0.21
24 8 0.29
25 11 0.39
ACGTcount: A:0.05, C:0.20, G:0.00, T:0.75
Consensus pattern (22 bp):
TTTTTTTTCTATATTTTCTCTC
Found at i:1498268 original size:166 final size:164
Alignment explanation
Indices: 1498085--1498791 Score: 700
Period size: 165 Copynumber: 4.3 Consensus size: 164
1498075 GAGAAAAGGG
* * *
1498085 TTTCAAGGAAAAAATTCAAAATTCATGGAAATGAATGAATTTTTGAAAACCGAATTAATAAT-AT
1 TTTCAAGGAAAAAATTCAAAATTCATGAAAATGAATGAATTTTTGAAAACTGAATTAAT-ATGAA
* *
1498149 ATAAATAATAACATTTAATAACTTTTAAAAATTAAAAACCAAGAAAATTCCCCTCGAAAAAATTT
65 ATAAATAATAATATTTGATAACTTTTAAAAATTAAAAACCAAGAAAATT-CCCT-GAAAAAATTT
* * *
1498214 ACGGAGTAGAAAACACTGTATTTCAAAAAAATGG-AGA
128 ACGGAGTAGAAAACTCTATATTTCAAAAAAA-GGAAAA
* * * * *
1498251 TTTCAAGGAAAAAATTCAAAATTCATGAAAATGAATAAATTTTAGAGAATTGAATTAATGTGAAA
1 TTTCAAGGAAAAAATTCAAAATTCATGAAAATGAATGAATTTTTGAAAACTGAATTAATATGAAA
* * * *
1498316 TAAATGATAATATTTGATGACTTTTAAAAATTAAAAATCAAGAAAACTTCCCT-AAAAATATTCA
66 TAAATAATAATATTTGATAACTTTTAAAAATTAAAAACCAAGAAAA-TTCCCTGAAAAA-ATTTA
* * *
1498380 CGAAGTAGAAAATTCGATATTTCAAAAAAAGGAAAA
129 CGGAGTAGAAAACTCTATATTTCAAAAAAAGGAAAA
* * * * * *
1498416 TTTCAAAGAAAAAA-TCAAAAACTCATAAAAATGAATTAATTTTTG-AAACATGGATTAATATAA
1 TTTCAAGGAAAAAATTC-AAAATTCATGAAAATGAATGAATTTTTGAAAAC-TGAATTAATATGA
** *
1498479 AATAAATAA-AATATTTGATGAA-TTTTAAAAATTAAAAACCAAGAAAAACCTCCTTAAAAAATT
64 AATAAATAATAATATTTGAT-AACTTTTAAAAATTAAAAACCAAGAAAATTC-CCTGAAAAAATT
* *
1498542 TCACGGAGTAGAAAACTCCATATTTCAGAAAAAAGG-GAA
127 T-ACGGAGTAGAAAACTCTATATTTCA-AAAAAAGGAAAA
* * * * * * * *
1498581 TTTGAAGGAAACAAGTTCCAAAACTAATGAAAATAAAAT-AATTTTTGAAAACAT-ATTTTATGT
1 TTTCAAGGAAA-AAATT-CAAAATTCATGAAAAT-GAATGAATTTTTGAAAAC-TGAATTAATAT
* * * *
1498644 GAATTAAATAACAATATTTGATAAATTTTAAAAATTAAAAACCAA-AAAAATCCCTATGAAAAAA
62 GAAATAAATAATAATATTTGATAACTTTTAAAAATTAAAAACCAAGAAAATTCCC--TGAAAAAA
* * * *
1498708 TTTACGGGGGAGAAAACTCTATATTTCGAAAATAGGAAAA
125 TTTACGGAGTAGAAAACTCTATATTTCAAAAAAAGGAAAA
* ** *
1498748 CTTCAAGG-AAAAATAAAAAAATTCATGAAAATGAACGAATTTTT
1 TTTCAAGGAAAAAAT-TCAAAATTCATGAAAATGAATGAATTTTT
1498792 CAAATCTAAT
Statistics
Matches: 449, Mismatches: 69, Indels: 47
0.79 0.12 0.08
Matches are distributed among these distances:
163 1 0.00
164 53 0.12
165 149 0.33
166 121 0.27
167 75 0.17
168 50 0.11
ACGTcount: A:0.52, C:0.09, G:0.11, T:0.28
Consensus pattern (164 bp):
TTTCAAGGAAAAAATTCAAAATTCATGAAAATGAATGAATTTTTGAAAACTGAATTAATATGAAA
TAAATAATAATATTTGATAACTTTTAAAAATTAAAAACCAAGAAAATTCCCTGAAAAAATTTACG
GAGTAGAAAACTCTATATTTCAAAAAAAGGAAAA
Found at i:1498747 original size:332 final size:331
Alignment explanation
Indices: 1498085--1498791 Score: 783
Period size: 332 Copynumber: 2.1 Consensus size: 331
1498075 GAGAAAAGGG
* * *
1498085 TTTCAAGGAAAAAATTC-AAAATTCATGGAAATGAATGAATTTTTGAAAACCGAATTAATAATAT
1 TTTCAAAGAAAAAA-TCAAAAATTCATGAAAATGAATGAATTTTTGAAAACCGAATTAATAATAA
*
1498149 ATAAATAATAACATTTAATAACTTTTAAAAATTAAAAACCAAGAAAATTCCCCTCGAAAAAATTT
65 ATAAATAATAACATTTAATAACTTTTAAAAATTAAAAACCAAGAAAATACCCCTCGAAAAAATTT
** * * *
1498214 ACGGAGTAGAAAACACTGTATTTCAAAAAAATGGAGATTTCAAGGAAAAAATTCAAAATTCATGA
130 ACGGAGTAGAAAACACCATATTTCAAAAAAAGGGAGATTTCAAGGAAAAAATTCAAAACTAATGA
* * * * * * *
1498279 AAATGAATAAATTTTAGAGAATTGAATTAATGTGAAATAAATGATAATATTTGATGACTTTTAAA
195 AAATAAATAAATTTTAGAAAAATGAATTAATGTGAAATAAATAACAATATTTGATAAATTTTAAA
* * * * *
1498344 AATTAAAAATCAAGAAAACTTCCCTAAAAATATTCACGAAGTAGAAAATTCGATATTTCAAAAAA
260 AATTAAAAACCAAGAAAACATCCCTAAAAAAATTCACGAAGGAGAAAACTCGATATTTCAAAAAA
1498409 AGGAAAA
325 AGGAAAA
* * * * *
1498416 TTTCAAAGAAAAAATCAAAAACTCATAAAAATGAATTAATTTTTG-AAACATGGATTAAT-ATAA
1 TTTCAAAGAAAAAATCAAAAATTCATGAAAATGAATGAATTTTTGAAAAC-CGAATTAATAAT-A
* * *
1498479 AATAAATAA-AATATTTGATGAA-TTTTAAAAATTAAAAACCAAGAAAA-ACCTCCT-TAAAAAA
64 AATAAATAATAACATTTAAT-AACTTTTAAAAATTAAAAACCAAGAAAATACC-CCTCGAAAAAA
* * *
1498540 TTTCACGGAGTAGAAAACTCCATATTTCAGAAAAAAGGGA-ATTTGAAGGAAACAAGTTCCAAAA
127 TTT-ACGGAGTAGAAAACACCATATTTCA-AAAAAAGGGAGATTTCAAGGAAA-AAATT-CAAAA
* * * *
1498604 CTAATGAAAATAAA-ATAATTTTTGAAAACAT-ATTTTATGTGAATTAAATAACAATATTTGATA
188 CTAATGAAAATAAATA-AATTTTAGAAAA-ATGAATTAATGTGAAATAAATAACAATATTTGATA
* ** *
1498667 AATTTTAAAAATTAAAAACCAA-AAAA-ATCCCTATGAAAAAATTTACGGGGGAGAAAACTCTAT
251 AATTTTAAAAATTAAAAACCAAGAAAACATCCCTA--AAAAAATTCACGAAGGAGAAAACTCGAT
* *
1498730 ATTTCGAAAATAGGAAAA
314 ATTTCAAAAAAAGGAAAA
* * * *
1498748 CTTC-AAGGAAAAATAAAAAAATTCATGAAAATGAACGAATTTTT
1 TTTCAAAGAAAAAAT-CAAAAATTCATGAAAATGAATGAATTTTT
1498792 CAAATCTAAT
Statistics
Matches: 313, Mismatches: 49, Indels: 27
0.80 0.13 0.07
Matches are distributed among these distances:
329 11 0.04
330 83 0.27
331 82 0.26
332 136 0.43
333 1 0.00
ACGTcount: A:0.52, C:0.09, G:0.11, T:0.28
Consensus pattern (331 bp):
TTTCAAAGAAAAAATCAAAAATTCATGAAAATGAATGAATTTTTGAAAACCGAATTAATAATAAA
TAAATAATAACATTTAATAACTTTTAAAAATTAAAAACCAAGAAAATACCCCTCGAAAAAATTTA
CGGAGTAGAAAACACCATATTTCAAAAAAAGGGAGATTTCAAGGAAAAAATTCAAAACTAATGAA
AATAAATAAATTTTAGAAAAATGAATTAATGTGAAATAAATAACAATATTTGATAAATTTTAAAA
ATTAAAAACCAAGAAAACATCCCTAAAAAAATTCACGAAGGAGAAAACTCGATATTTCAAAAAAA
GGAAAA
Found at i:1500602 original size:21 final size:21
Alignment explanation
Indices: 1500589--1500629 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
1500579 ATTTTGTAAT
1500589 TCAAAATATCAATTTTGATAC
1 TCAAAATATCAATTTTGATAC
*
1500610 TCAAAATATCATTTTTGATA
1 TCAAAATATCAATTTTGATA
1500630 GGCATCCAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.41, C:0.12, G:0.05, T:0.41
Consensus pattern (21 bp):
TCAAAATATCAATTTTGATAC
Found at i:1510923 original size:21 final size:20
Alignment explanation
Indices: 1510889--1510927 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
1510879 CCTATAAACC
1510889 TAAAATTCTCTCAAATTTTCT
1 TAAAATTCTCTC-AATTTTCT
1510910 TAAAATT-TCATCAATTTT
1 TAAAATTCTC-TCAATTTT
1510928 ACATCAAAAC
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
20 8 0.47
21 9 0.53
ACGTcount: A:0.36, C:0.15, G:0.00, T:0.49
Consensus pattern (20 bp):
TAAAATTCTCTCAATTTTCT
Found at i:1512427 original size:19 final size:20
Alignment explanation
Indices: 1512399--1512445 Score: 69
Period size: 19 Copynumber: 2.4 Consensus size: 20
1512389 TTATGCTTTA
*
1512399 TATCGATACATGTTC-ATTG
1 TATCGATACATGTACAATTG
*
1512418 TATTGATACATGTACAATTG
1 TATCGATACATGTACAATTG
1512438 TATCGATA
1 TATCGATA
1512446 TATGAAACTG
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
19 13 0.54
20 11 0.46
ACGTcount: A:0.32, C:0.13, G:0.15, T:0.40
Consensus pattern (20 bp):
TATCGATACATGTACAATTG
Found at i:1512439 original size:20 final size:19
Alignment explanation
Indices: 1512377--1512445 Score: 68
Period size: 20 Copynumber: 3.5 Consensus size: 19
1512367 CACATCCAGA
*
1512377 TGTATCGATACAT-TATGCTT
1 TGTATCGATACATGTA--CAT
* *
1512397 TATATCGATACATGTTCAT
1 TGTATCGATACATGTACAT
*
1512416 TGTATTGATACATGTACAAT
1 TGTATCGATACATGTAC-AT
1512436 TGTATCGATA
1 TGTATCGATA
1512446 TATGAAACTG
Statistics
Matches: 40, Mismatches: 7, Indels: 4
0.78 0.14 0.08
Matches are distributed among these distances:
19 16 0.40
20 23 0.57
21 1 0.03
ACGTcount: A:0.30, C:0.13, G:0.14, T:0.42
Consensus pattern (19 bp):
TGTATCGATACATGTACAT
Found at i:1516760 original size:48 final size:50
Alignment explanation
Indices: 1516705--1516816 Score: 183
Period size: 48 Copynumber: 2.3 Consensus size: 50
1516695 AATAAACTAG
* *
1516705 ATGTATCGATACATTCAAAAATGTATCGATACATCTGGGTAAAAAA-A-A
1 ATGTATCGATACATTCAAAAATGTATCAATACATCTAGGTAAAAAACAGA
*
1516753 ATGTATCGATACATTGAAAAATGTATCAATACATCTAGGTAAAAAACAGA
1 ATGTATCGATACATTCAAAAATGTATCAATACATCTAGGTAAAAAACAGA
1516803 ATGTATCGATACAT
1 ATGTATCGATACAT
1516817 GTGCTGTTCA
Statistics
Matches: 59, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
48 43 0.73
49 1 0.02
50 15 0.25
ACGTcount: A:0.46, C:0.12, G:0.14, T:0.28
Consensus pattern (50 bp):
ATGTATCGATACATTCAAAAATGTATCAATACATCTAGGTAAAAAACAGA
Found at i:1516772 original size:24 final size:27
Alignment explanation
Indices: 1516721--1516816 Score: 98
Period size: 28 Copynumber: 3.7 Consensus size: 27
1516711 CGATACATTC
1516721 AAAAATGTATCGATACATCTGGGTAAAA
1 AAAAATGTATCGATACATCT-GGTAAAA
1516749 AAAAATGTATCGATACAT-T-G-----
1 AAAAATGTATCGATACATCTGGTAAAA
*
1516769 AAAAATGTATCAATACATCTAGGTAAAA
1 AAAAATGTATCGATACATCT-GGTAAAA
1516797 AACAGAATGTATCGATACAT
1 AA-A-AATGTATCGATACAT
1516817 GTGCTGTTCA
Statistics
Matches: 56, Mismatches: 2, Indels: 18
0.74 0.03 0.24
Matches are distributed among these distances:
20 17 0.30
21 1 0.02
23 1 0.02
25 1 0.02
27 1 0.02
28 20 0.36
29 1 0.02
30 14 0.25
ACGTcount: A:0.48, C:0.11, G:0.15, T:0.26
Consensus pattern (27 bp):
AAAAATGTATCGATACATCTGGTAAAA
Found at i:1516774 original size:20 final size:20
Alignment explanation
Indices: 1516749--1516786 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
1516739 CTGGGTAAAA
*
1516749 AAAAATGTATCGATACATTG
1 AAAAATGTATCAATACATTG
1516769 AAAAATGTATCAATACAT
1 AAAAATGTATCAATACAT
1516787 CTAGGTAAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.50, C:0.11, G:0.11, T:0.29
Consensus pattern (20 bp):
AAAAATGTATCAATACATTG
Found at i:1522523 original size:12 final size:12
Alignment explanation
Indices: 1522491--1522529 Score: 60
Period size: 12 Copynumber: 3.2 Consensus size: 12
1522481 AAATATTTTT
*
1522491 TAAAAATGAATA
1 TAAAAATGAAAA
1522503 TAGAAAATGAAAA
1 TA-AAAATGAAAA
1522516 TAAAAATGAAAA
1 TAAAAATGAAAA
1522528 TA
1 TA
1522530 CTTTTCCAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
12 14 0.56
13 11 0.44
ACGTcount: A:0.69, C:0.00, G:0.10, T:0.21
Consensus pattern (12 bp):
TAAAAATGAAAA
Found at i:1539615 original size:252 final size:252
Alignment explanation
Indices: 1539165--1539648 Score: 896
Period size: 252 Copynumber: 1.9 Consensus size: 252
1539155 GTCAACTATT
* * *
1539165 GATTATAGATATCTTTAATTACCAAAAAATTGAATAAGTTTATAAATAAATTACGATCTTCGAAT
1 GATTATAGATATCTTTAATTACCAAAAAAATGAATAAGTTAATAAATAAATTACGATCTTCAAAT
*
1539230 TTCCTTCTTTTAAGTACATTACATAAAAAAATATTTGAACAATAAAATAATAAAAGTTTAACAAA
66 TTCCTTCTTTTAAGTACATTACATAAAAAAATATTTGAACAATAAAACAATAAAAGTTTAACAAA
1539295 CCTATGTGGTGATGATAGACCACATCTAATTACATATTTGAAAACCTAAATACAATAATTCTAAA
131 CCTATGTGGTGATGATAGACCACATCTAATTACATATTTGAAAACCTAAATACAATAATTCTAAA
1539360 GTCTAAGGGATCATGATCAGTAAACTTAAAAATATGTTTGTTAATAAAAGTCTAAGG
196 GTCTAAGGGATCATGATCAGTAAACTTAAAAATATGTTTGTTAATAAAAGTCTAAGG
* * *
1539417 GATTCTAGATATCTTTAATTACCAAAAAAATGAATAAGTTAATAAATAAATTATGATGTTCAAAT
1 GATTATAGATATCTTTAATTACCAAAAAAATGAATAAGTTAATAAATAAATTACGATCTTCAAAT
1539482 TTCCTTCTTTTAAGTACATTACATAAAAAAATATTTGAACAATAAAACAATAAAAGTTTAACAAA
66 TTCCTTCTTTTAAGTACATTACATAAAAAAATATTTGAACAATAAAACAATAAAAGTTTAACAAA
1539547 CCTATGTGGTGATGATAGACCACATCTAATTACATATTTGAAAACCTAAATACAATAATTCTAAA
131 CCTATGTGGTGATGATAGACCACATCTAATTACATATTTGAAAACCTAAATACAATAATTCTAAA
*
1539612 GTCTCAGGGATCATGATCAGTAAACTTAAAAATATGT
196 GTCTAAGGGATCATGATCAGTAAACTTAAAAATATGT
1539649 ATGTATGATA
Statistics
Matches: 224, Mismatches: 8, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
252 224 1.00
ACGTcount: A:0.45, C:0.12, G:0.10, T:0.33
Consensus pattern (252 bp):
GATTATAGATATCTTTAATTACCAAAAAAATGAATAAGTTAATAAATAAATTACGATCTTCAAAT
TTCCTTCTTTTAAGTACATTACATAAAAAAATATTTGAACAATAAAACAATAAAAGTTTAACAAA
CCTATGTGGTGATGATAGACCACATCTAATTACATATTTGAAAACCTAAATACAATAATTCTAAA
GTCTAAGGGATCATGATCAGTAAACTTAAAAATATGTTTGTTAATAAAAGTCTAAGG
Done.