genome.fa.s1703.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1703
Parameters: 2 7 7 80 10 50 1000
Length:  65634

Tables:   1   

This is table  1  of  1  ( 65 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
687--730	14	2.9	16	80	16	58	38	0	0	61	0.96
1035--1084	16	3.1	16	77	8	57	30	0	0	70	0.88
2702--2740	20	2.0	20	89	0	60	28	15	10	46	1.78
5775--5887	49	2.3	50	87	1	165	24	19	15	40	1.90
7666--7991	78	4.2	74	77	11	275	30	25	11	32	1.91
7926--8040	49	2.3	50	83	4	144	30	25	12	32	1.92
7979--8339	78	4.6	77	73	12	249	29	25	11	33	1.90
7772--8194	205	2.1	205	81	9	499	31	25	10	32	1.90
7993--8275	156	1.8	156	81	9	362	30	24	11	34	1.90
7977--8342	79	4.7	79	74	9	225	29	25	12	33	1.92
7977--8340	157	2.3	154	78	8	371	29	25	11	33	1.91
10693--10772	24	3.2	24	75	18	74	41	0	1	57	1.07
10743--10808	30	2.1	32	86	5	91	50	1	1	46	1.20
11444--11487	11	4.0	11	85	8	54	70	0	0	29	0.88
11455--11488	12	2.9	12	91	4	52	70	0	0	29	0.87
11939--12015	17	4.4	17	76	12	59	44	0	1	54	1.08
11959--12023	9	7.0	10	76	18	52	46	0	0	53	1.00
11988--12051	24	2.7	25	75	20	66	40	0	0	59	0.97
15070--15134	11	6.6	10	75	15	64	56	1	0	41	1.08
15059--15123	29	2.2	29	81	5	78	53	3	1	41	1.25
15096--15142	21	2.3	20	92	7	78	63	0	0	36	0.94
17637--17680	21	2.0	21	82	4	52	59	0	2	38	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18203--18249	7	6.7	7	82	7	60	31	0	0	68	0.90
17747--18607	456	1.9	456	82	8	1075	41	9	5	43	1.59
18874--18917	2	21.5	2	90	4	70	47	2	2	47	1.27
35259--35345	45	1.9	45	95	0	156	24	1	19	55	1.50
35276--35375	45	2.2	45	84	7	123	28	2	17	53	1.55
37167--37240	20	3.7	20	81	3	103	35	13	20	31	1.91
37185--37260	21	3.7	21	82	3	109	40	11	18	28	1.86
37167--37260	41	2.3	41	100	0	188	38	12	19	29	1.89
37299--37324	13	2.0	13	100	0	52	38	15	15	30	1.88
39539--39583	21	2.1	21	84	8	56	53	4	20	22	1.63
41387--41417	15	2.1	15	93	0	53	48	16	22	12	1.80
43437--43516	20	3.8	20	75	15	79	26	15	15	43	1.85
43502--43540	13	3.0	13	96	0	69	30	17	15	35	1.91
45980--46053	20	3.7	20	81	3	103	35	13	20	31	1.91
45998--46073	21	3.7	21	82	3	109	40	11	18	28	1.86
45980--46073	41	2.3	41	100	0	188	38	12	19	29	1.89
47139--47178	20	2.0	20	85	5	53	42	2	22	32	1.67
48419--48469	11	4.8	10	73	21	50	47	0	0	52	1.00
48419--48473	21	2.6	22	86	11	71	47	0	0	52	1.00
48449--48497	16	3.1	16	88	5	64	48	6	0	44	1.27
56998--57169	51	3.4	49	77	5	146	32	11	26	30	1.91
57103--57405	79	3.8	79	82	5	335	33	11	25	30	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56906--57246	181	1.9	181	84	6	458	33	10	25	30	1.90
57103--57405	157	1.9	157	82	1	374	33	11	25	30	1.91
59276--59419	50	2.9	50	83	7	184	41	13	17	27	1.86
60522--60576	27	2.0	27	86	6	76	21	36	14	27	1.93
60496--62261	33	55.8	32	74	10	1181	21	29	12	36	1.90
60496--62261	65	27.9	64	74	10	1100	21	29	12	36	1.90
60648--60733	32	3.0	27	81	8	73	20	31	12	34	1.91
60554--62261	324	5.4	320	75	10	923	21	29	12	36	1.90
62141--62195	27	2.0	27	96	0	101	23	34	10	30	1.89
62391--62615	32	7.0	32	78	8	235	30	29	17	22	1.97
62401--62615	63	3.4	64	87	7	278	31	28	18	21	1.97
62393--62615	95	2.3	98	80	6	251	30	29	17	22	1.97
62714--63048	52	7.2	43	71	17	125	24	22	17	35	1.95
62760--63005	52	4.9	51	75	12	197	24	23	17	34	1.96
62662--62998	147	2.3	148	85	2	444	24	21	17	36	1.95
62960--63041	42	2.0	42	90	2	130	25	23	20	30	1.99
62959--63045	41	2.1	42	86	2	131	24	21	19	34	1.96
62809--63093	95	3.0	95	85	5	330	24	23	18	33	1.97
63019--63247	52	4.4	52	82	6	261	25	22	17	34	1.96
63003--63262	104	2.5	101	79	11	269	25	22	16	35	1.95
64024--64076	27	2.0	27	88	7	81	41	9	9	39	1.70

Tables:   1

The End!