genome.fa.s1705.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1705
Parameters: 2 7 7 80 10 50 1000
Length:  88495

Tables:   1   

This is table  1  of  1  ( 60 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9619--9695	13	6.4	12	82	11	79	85	9	3	1	0.77
9619--9684	21	3.2	20	82	16	82	87	9	3	0	0.63
9619--9695	26	3.0	26	83	7	104	85	9	3	1	0.77
9619--9684	1	66.0	1	76	0	60	87	9	3	0	0.63
10915--11874	28	33.6	28	86	3	1148	27	31	18	22	1.97
10917--11874	143	6.7	140	86	2	1180	27	31	18	22	1.97
12488--12539	20	2.6	20	78	0	59	28	15	9	46	1.77
16945--17334	150	2.6	150	83	5	443	25	21	18	34	1.96
22649--22674	13	2.0	13	100	0	52	38	15	15	30	1.88
22630--22694	33	2.0	33	87	6	96	41	16	13	27	1.87
26284--26308	13	1.9	13	100	0	50	36	16	16	32	1.90
26264--26333	33	2.1	33	89	0	104	34	11	14	40	1.82
26375--26399	13	1.9	13	100	0	50	32	16	16	36	1.90
26408--26532	52	2.4	52	94	0	214	35	18	17	28	1.94
32394--32432	13	3.0	13	96	0	69	30	17	15	35	1.91
34992--35017	13	2.0	13	100	0	52	38	15	15	30	1.88
34973--35037	33	2.0	33	84	6	87	41	15	13	29	1.86
39156--39212	20	2.8	20	86	0	69	36	14	10	38	1.80
41799--41839	21	2.0	21	100	0	82	19	14	12	53	1.72
47610--47656	22	2.2	21	85	11	60	23	6	6	63	1.41
51350--51834	55	8.8	54	82	7	435	25	28	13	32	1.94
51377--52992	28	57.2	28	78	10	679	29	27	16	26	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51829--52986	56	20.3	56	82	3	1224	31	27	17	23	1.97
51829--52986	84	13.5	84	82	3	1224	31	27	17	23	1.97
53514--53545	17	1.9	16	93	6	55	87	3	0	9	0.64
54650--55765	48	23.7	49	75	12	675	31	17	25	25	1.97
55116--55765	91	6.9	90	79	10	587	31	17	25	26	1.97
54787--55765	233	4.2	233	87	3	1287	31	17	25	26	1.97
55029--55768	142	5.3	137	81	11	592	30	17	25	26	1.97
55785--56346	33	17.7	33	78	8	438	36	12	30	19	1.90
55919--55971	27	2.0	27	84	0	70	30	15	30	24	1.95
55806--56319	94	5.4	93	74	16	373	38	12	30	19	1.89
55814--56319	127	4.0	126	83	5	566	37	12	30	19	1.89
56173--56252	27	3.0	27	90	3	117	35	15	30	20	1.93
55954--56344	154	2.5	154	81	8	450	37	13	29	19	1.89
57089--58025	471	2.0	472	91	0	1507	28	19	22	29	1.98
60701--60725	13	1.9	13	100	0	50	40	12	16	32	1.84
61461--62084	49	12.6	52	81	8	272	31	17	26	24	1.97
61565--62089	49	10.7	49	82	7	502	30	18	27	23	1.97
61565--62138	98	5.9	97	84	5	616	31	17	26	24	1.97
61565--62138	147	3.9	148	80	6	597	31	17	26	24	1.97
61910--62141	49	5.1	44	77	11	227	35	18	21	24	1.95
61908--62138	92	2.5	92	90	0	356	35	18	21	25	1.96
62192--62346	57	2.7	57	87	5	206	23	15	28	32	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62204--62346	29	5.0	29	84	3	182	23	16	27	32	1.96
63782--63831	1	50.0	1	79	0	55	0	0	10	90	0.47
63773--63828	8	6.9	8	86	13	71	0	0	12	87	0.54
63773--63828	20	2.8	19	84	7	76	0	0	12	87	0.54
63785--63831	12	3.8	12	91	2	76	0	0	10	89	0.49
77648--77675	13	2.2	13	100	0	56	39	17	14	28	1.89
77630--77695	33	2.0	33	88	5	98	39	13	16	30	1.87
77727--77783	19	3.3	19	72	27	72	33	19	12	35	1.89
77721--77783	32	2.0	32	100	0	126	34	19	11	34	1.87
77746--77770	13	1.9	13	100	0	50	32	16	16	36	1.90
78631--78696	16	4.0	16	83	14	80	1	0	12	86	0.64
78635--78696	25	2.5	26	86	7	92	1	0	12	85	0.67
78631--78688	1	58.0	1	75	0	53	1	0	10	87	0.60
83462--83535	27	2.7	27	93	0	121	18	18	39	22	1.93
84691--84754	32	2.0	33	90	3	103	43	14	12	29	1.81
84972--85036	31	2.1	32	97	2	123	41	18	10	29	1.84

Tables:   1

The End!