Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1707
Parameters: 2 7 7 80 10 50 1000
Length:  51646

Tables:   1   

This is table  1  of  1  ( 49 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3129--3169
17
2.4
17
87
0
55
36
2
12
48
1.54
4993--5063
27
2.6
28
86
2
99
22
4
23
49
1.67
5139--5184
20
2.3
20
88
0
65
10
50
4
34
1.57
7636--7681
21
2.1
22
84
4
58
30
19
30
19
1.97
9565--9635
27
2.6
27
88
6
99
22
7
23
46
1.76
10085--10262
97
1.8
97
83
0
239
32
15
19
33
1.92
10238--10623
186
2.1
186
88
0
567
44
7
10
38
1.67
15354--15382
2
14.5
2
100
0
58
0
48
0
51
1.00
15382--15414
2
16.5
2
100
0
66
48
0
0
51
1.00
21500--21567
32
2.3
29
82
10
75
55
0
5
38
1.24
21566--21634
17
3.7
19
77
15
72
43
2
0
53
1.15
22730--22762
15
2.3
15
89
5
50
39
0
3
57
1.14
22693--22767
32
2.3
33
72
20
77
32
2
4
61
1.28
26458--26502
20
2.2
21
81
18
60
46
0
0
53
1.00
27247--27278
15
2.1
15
94
0
55
59
3
0
37
1.13
27495--27535
19
2.2
19
86
0
55
29
0
0
70
0.87
28317--28369
2
26.5
2
100
0
106
49
0
0
50
1.00
30045--30123
9
8.9
9
69
12
56
31
0
1
67
0.99
30020--30085
32
2.1
31
83
11
80
31
0
1
66
1.01
30036--30098
26
2.4
26
80
17
69
34
0
0
65
0.93
30062--30100
20
2.0
20
85
10
53
30
0
0
69
0.89
30212--30276
4
16.8
4
80
12
73
78
0
20
1
0.83
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
30212--30277
12
5.7
12
82
7
82
78
0
19
1
0.82
30211--30277
20
3.2
21
84
12
84
79
0
19
1
0.82
31624--31692
31
2.2
30
80
16
79
36
1
0
62
1.04
32406--32432
8
3.4
8
100
0
54
51
0
0
48
1.00
33343--33396
27
2.0
28
85
3
74
44
0
3
51
1.19
33559--33583
7
3.6
7
100
0
50
40
0
0
60
0.97
35771--35866
32
3.3
28
75
21
90
60
2
0
37
1.09
35771--35827
27
2.1
27
87
12
82
63
0
0
36
0.95
35786--35853
32
2.1
33
88
2
102
57
2
0
39
1.14
35872--35917
24
2.0
23
86
4
65
67
0
0
32
0.91
37035--37076
22
1.9
22
95
0
75
76
2
21
0
0.90
37095--37141
20
2.4
20
85
3
60
42
2
0
55
1.12
37110--37149
20
2.0
20
85
0
53
52
0
0
47
1.00
37133--37187
20
2.9
19
74
23
53
36
0
1
61
1.06
37454--37520
20
3.3
20
74
11
66
64
2
1
31
1.18
37508--37558
18
2.8
18
78
16
52
58
1
0
39
1.09
37848--37891
20
2.1
21
83
4
54
56
0
0
43
0.99
38456--38505
25
2.0
25
84
7
66
52
0
0
48
1.00
38473--38515
12
3.5
12
81
6
50
51
0
0
48
1.00
40820--40853
10
3.3
10
88
8
50
38
0
0
61
0.96
40819--40851
11
3.1
11
86
8
50
33
0
0
66
0.92
43200--43292
26
3.6
25
74
18
82
25
7
20
46
1.77
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
45847--45892
21
2.1
22
84
4
58
30
19
30
19
1.97
47771--47846
27
2.8
29
82
11
97
22
9
21
47
1.78
50475--50523
20
2.4
21
83
12
66
36
0
0
63
0.95
50478--50529
22
2.4
20
78
15
59
36
0
0
63
0.95
51151--51345
97
2.0
97
86
2
275
31
13
21
33
1.92

Tables:   1

The End!