Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Scaffold1708

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6187
ACGTcount: A:0.31, C:0.19, G:0.19, T:0.31


Found at i:4700 original size:22 final size:24

Alignment explanation


    Indices: 4674--4719  Score: 69
    Period size: 22  Copynumber: 2.0  Consensus size: 24

       4664 TGTCCATCTT

                                    
       4674 TTTAATAGAATC-T-ATATATATA
          1 TTTAATAGAATCTTAATATATATA

                   *                
       4696 TTTAATATAATCTTAATATATATA
          1 TTTAATAGAATCTTAATATATATA

       4720 AGACATCCTC


Statistics
Matches: 21,  Mismatches: 1, Indels: 2
        0.88            0.04        0.08

Matches are distributed among these distances:
  22   11  0.52
  23    1  0.05
  24    9  0.43

ACGTcount: A:0.46, C:0.04, G:0.02, T:0.48


Consensus pattern (24 bp):   
TTTAATAGAATCTTAATATATATA
Done.