Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold1709
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 12112
ACGTcount: A:0.34, C:0.14, G:0.20, T:0.32
Found at i:3660 original size:465 final size:469
Alignment explanation
Indices: 13--12074 Score: 12187
Period size: 466 Copynumber: 25.9 Consensus size: 469
3 AGAATGAGGT
** * * * * * * *
13 ATTAGTATGACTATTCCCGTTTG-CTCTTTTGAGGGAGGAACTTTGATTCGATC-TAAACGGTGT
1 ATTAGTATGACTATTCATGTTTGTCTCCTTTGAGGGATGAACTTTGATTCTATCAAAAATGATGG
* * * *** *
76 AAAGAAAAGCTTTTCTTGCGGGACACCAAAATCATCAATGTCATGTATCCTAAT-CTGGGAATGT
66 AAAGAAAAGTTTTTCTTGC--GACACC-ATATCATCAATGTCATGCATCCTAATGAACGCAATGT
* ** * * * ** *
140 GTTTTTGGTTTTCGAT-TTTGGGAAAGAAAGGAGACTGTTATGAGAGTCGA-TGCTACGTCTTAT
128 CTTTTT--TTCCCAATCTTT--AAAAGAATGGAGACT-TTACAAGAATC-ATTGCTA-GTCTTAT
* * * * * *
203 TTACGGGATGAACATTGATTTTAA-GGAAA-AGGGTAAGGAAAAGA-TTTCGATGCAAACGAAAA
186 TT-TGGGATGAACTTTGATTTTAACGAAAATAAGGCAAGGAAAAGATTTTCGATGCAAAAGAAAA
** * * * * * *
265 --ATCTCATATCGTTTAT-CGAACTAAGGAGAATGTTTTTATAGTGTCAAATCA-GAAGTGAATG
250 TGATC-GGTATCATTTATCCTAA-TGAGGAGAATGTTTTTATAGTGTCTAATCACAAAATGAATG
* * * * * *
326 ATGATCATTGCTAGAATCTATATTTGACTCATTTGAGGCACAAAGTTAGACTTGCA-AAAATTGG
313 AAGATCATTACTAGAATCTATGTTTGTCTCATTTGAGGCACAAAGTTAGGCTT-TATAAAATTGG
* *
390 -GAG-AGAAAAGCCTTTCTGAGAAGCCAAAGCATCAATATCGTCTATCCTAATGACACAACTTTG
377 AGAGAAG-AAAGCCTTTTTGAGAAGCCAAAGCATCAATATCATCTATCCTAATGACACAACTTTG
* * *
453 TTTATGGTGCCCAATCTTG-AAATAATGCG
441 TTTATGGTG-CAAATCCTGAAAAGAATGCG
482 ATTAGTATGACTATTCATG-TTGTCTCCTTTGA-GGATGAACTTTGATTCTATCAAAAATGATGG
1 ATTAGTATGACTATTCATGTTTGTCTCCTTTGAGGGATGAACTTTGATTCTATCAAAAATGATGG
*
545 -AAGAAAAGTTTTTTCTTGCGACACCATATCATCAATGTCATGCATCCTACTGAACGCAATGTCT
66 AAAGAAAAG-TTTTTCTTGCGACACCATATCATCAATGTCATGCATCCTAATGAACGCAATGTCT
609 TTTTTTCCCAATCTTTAAAAGAATGGAGAC-TTACAAGAATCATTGCTAGT-TTATTTTTGGGAT
130 TTTTTTCCCAATCTTTAAAAGAATGGAGACTTTACAAGAATCATTGCTAGTCTTA-TTTTGGGAT
*
672 GAACTTTGATTTTAACGAAAATAAGGCAAGG-AAAGATTTTC-ATGCAAAAGAAAATGATCGGTC
194 GAACTTTGATTTTAACGAAAATAAGGCAAGGAAAAGATTTTCGATGCAAAAGAAAATGATCGGTA
735 TCATTTATCCTAATGAGGAGAATGTTTTTAT-GTGTCT-ATCACAAAAATGAATGAAGATCATTA
259 TCATTTATCCTAATGAGGAGAATGTTTTTATAGTGTCTAATCAC-AAAATGAATGAAGATCATTA
* * * * * *
798 CTAGAATCCATGTTTGTCTCATTTGAGGCACGAAGTTAGGCTTTATAACACTGGTGGGAAGAAAG
323 CTAGAATCTATGTTTGTCTCATTTGAGGCACAAAGTTAGGCTTTATAAAATTGGAGAGAAGAAAG
* ** *
863 CCTTTTTGAGAAGCCAAAGCATCATTATCATCTA---TAATGGGA-AGGACTTTGTTTATGGCGC
388 CCTTTTTGAGAAGCCAAAGCATCAATATCATCTATCCTAAT--GACACAACTTTGTTTATGGTGC
*
924 ATAATCCT-AAAAGAATGAGG
451 A-AATCCTGAAAAGAATG-CG
* * * * * *
944 ATTAGTAGTGACTATTCACGTTTGCCTCTTTTGAGGGAGGAACTTTGATTC-ATCTAAAACG-TG
1 ATTAGTA-TGACTATTCATGTTTGTCTCCTTTGAGGGATGAACTTTGATTCTATCAAAAATGATG
* * * ** * *
1007 TAAAGAAAAGCTTTTCTTGCGACACCCA-ATCATCAATGTCATGTATCCT-ATGATGGGAATGTG
65 GAAAGAAAAGTTTTTCTTGCGACA-CCATATCATCAATGTCATGCATCCTAATGAACGCAATGTC
* * * * ** *
1070 TTTTTGGTT-TCGAT-TTTGGGAAAGAAAGGAGACTGTTATGAGAGTCGA-TGCTAGTCTTATTT
129 TTTTT--TTCCCAATCTTT--AAAAGAATGGAGACT-TTACAAGAATC-ATTGCTAGTCTTATTT
* * * * * *
1132 ACGGGAT-AACATTGATTTT-ACGGAAATAGGGTAAGGAAAAGATTTTCGATGCAAAA-AAAATT
188 -TGGGATGAACTTTGATTTTAACGAAAATAAGGCAAGGAAAAGATTTTCGATGCAAAAGAAAATG
** * * * * * *
1194 ATCAATATCGTTTATCCAAATGAGGAGAATG-TTTTATAGTGTCAAATCAGAAAATGACTGATGA
252 ATCGGTATCATTTATCCTAATGAGGAGAATGTTTTTATAGTGTCTAATCACAAAATGAATGAAGA
* * * **
1258 TCATTGCTAGAATCTAT-ATTG-ATCATTTGAGGCAC-AAGTTAGGGACTTTGCAAAATTGGAGA
317 TCATTACTAGAATCTATGTTTGTCTCATTTGAGGCACAAAGTTA-GG-CTTTATAAAATTGGAGA
1320 GAAGGAAAGCCTTTCTTGAGAAGCCAAAGCATCAATATCATCTATCCTAATGACACAACTTTGTT
380 GAA-GAAAGCCTTT-TTGAGAAGCCAAAGCATCAATATCATCTATCCTAATGACACAACTTTGTT
*
1385 TATGGTGCCAAATCCTGAAAATAATGCG
443 TATGGTG-CAAATCCTGAAAAGAATGCG
1413 ATTAGTATGACTATTCATGTTTGTCTCC-TTGAGGGATGAACTTTGATTCTATCCAAAAATGAT-
1 ATTAGTATGACTATTCATGTTTGTCTCCTTTGAGGGATGAACTTTGATTCTAT-CAAAAATGATG
*
1476 GAAAGAAAAGTTTTTCTTGCGACACCATATCATCAATGTCATGCATACCTAACGAACGCAATGTC
65 GAAAGAAAAGTTTTTCTTGCGACACCATATCATCAATGTCATGCAT-CCTAATGAACGCAATGTC
* *
1541 -TTTTTTCCCACTCTTTAAAAGAATGGGAGACTTAACAAGAATCATTGCTAGTCTTATTTTTGGG
129 TTTTTTTCCCAATCTTTAAAAGAAT-GGAGACTTTACAAGAATCATTGCTAGTCTTA-TTTTGGG
*
1605 ATGAACTTTGATTTTAACGAAAATAAGGCCAAGGAAAAAGATTTTC-ATGC-AAAGAAAATGCTC
192 ATGAACTTTGATTTTAACGAAAATAAGG-CAAGG-AAAAGATTTTCGATGCAAAAGAAAATGATC
1668 GGTATCATTTATCCTAATGAGGAGAATG-TTTTATAGTGTCTAATCACAAAATGAATGAAGATCA
255 GGTATCATTTATCCTAATGAGGAGAATGTTTTTATAGTGTCTAATCACAAAATGAATGAAGATCA
* * *
1732 TTACTA-AATCCATGTTTGTCTCATTTGAGGCACGAAGTTAGGCTTTATAACAATTGGTG-GAA-
320 TTACTAGAATCTATGTTTGTCTCATTTGAGGCACAAAGTTAGGCTTTATAA-AATTGGAGAGAAG
* * * *
1794 AGAAGCC-TTTTGAG-AGCCAAAGCATC-ATATCATATAT-ATAACGGGA-AGAACTTTGTTTCA
384 A-AAGCCTTTTTGAGAAGCCAAAGCATCAATATCATCTATCCTAA--TGACACAACTTTGTTT-A
* * *
1854 T-G-GCACTATCCTAAAAAGAATGAGG
445 TGGTGCA-AATCCTGAAAAGAATG-CG
* * * * * * * * *
1879 ATTAGTA-GACTATTCAACGTTTGCCTCTTTTGAGGGAGGAACTTTGATTCGATCTAACACGGTG
1 ATTAGTATGACTATTC-ATGTTTGTCTCCTTTGAGGGATGAACTTTGATTCTATCAAAAATGATG
* * * * ** *
1943 TAAAG-AAA-CTTTTCTTGCGACA-CAAATCATCAATGTCATGTATCCTAATGATGGGAATGT-T
65 GAAAGAAAAGTTTTTCTTGCGACACCATATCATCAATGTCATGCATCCTAATGAACGCAATGTCT
* * * ** * *
2004 TTTGGTTT--CGAT-TTTGGAAAGAAAGGAGACTGTTATGAGAGTCGA-TGCTAGTCTTATTTAC
130 TTT--TTTCCCAATCTTT-AAAAGAATGGAGACT-TTACAAGAATC-ATTGCTAGTCTTATTT-T
* * * * *
2065 GGGATGAACATTGATTTTAAGGAAAATAGGGTAAGG-AAAGA-TTTCGATGCAAAAGAAAATTAT
189 GGGATGAACTTTGATTTTAACGAAAATAAGGCAAGGAAAAGATTTTCGATGCAAAAGAAAATGAT
** * * * * * *
2128 CAATATCGTTTATCCGAAT-AGGAGAATG-TTTTATTAGTGTC-AAACAGAAAGTTGAATGATGA
254 CGGTATCATTTATCCTAATGAGGAGAATGTTTTTA-TAGTGTCTAATCACAAA-ATGAATGAAGA
* * * * ***
2190 TCATTGCT--AATCTAT-ATTGACT-ATTTGAGGCACAAAGTTTAGATCTTGCGAAAATTGGAGA
317 TCATTACTAGAATCTATGTTTGTCTCATTTGAGGCACAAAG-TTAG-GCTTTATAAAATTGGAGA
* *
2251 GAAGAAAGCCTTTCTGAGAAGCCAAAGCATCAATCTCATCTATCCTAATGACACAACTTTGTTTA
380 GAAGAAAGCCTTTTTGAGAAGCCAAAGCATCAATATCATCTATCCTAATGACACAACTTTGTTTA
*
2316 TGCGTGCCAAATCCTGAAAA-TATGCG
445 TG-GTG-CAAATCCTGAAAAGAATGCG
2342 ATTAGTA-GACTATTTCATGTTTGTCTCCTTTGA-GGATGAACTTTGATTCTATC-AAAATGATG
1 ATTAGTATGACTA-TTCATGTTTGTCTCCTTTGAGGGATGAACTTTGATTCTATCAAAAATGATG
* *
2404 GAAAGAAAAGTTTTTCTTGCGACACCATATCATCAATGT-ATACATCCTAACGAACGCAATGTCT
65 GAAAGAAAAGTTTTTCTTGCGACACCATATCATCAATGTCATGCATCCTAATGAACGCAATGTCT
*
2468 TTTTTTCCCAATC-TTAAAAGAATGGAGGACTTTACAAGAATCCTTGCTAGTCTTATTTTTGGGA
130 TTTTTTCCCAATCTTTAAAAGAATGGA-GACTTTACAAGAATCATTGCTAGTCTTA-TTTTGGGA
*
2532 TGAAACTTTGATTTTAACGAAAATAAGGCAAGGAAAAGATTTAC-ATGCAAAAGAATAACTGATC
193 TG-AACTTTGATTTTAACGAAAATAAGGCAAGGAAAAGATTTTCGATGCAAAAGAA-AA-TGATC
* * *
2596 GGTATCATTTATCCTAATGAGGATATTG-CTTTACTAGTGTCTAATCACAAAATGAATGAAGATC
255 GGTATCATTTATCCTAATGAGGAGAATGTTTTTA-TAGTGTCTAATCACAAAATGAATGAAGATC
* * * *
2660 ATTACTAG-ATCTATGTTTGTCTCATTTGAGGCACGAAGTTAGGCTTTATACAATTGGTGGGAAG
319 ATTACTAGAATCTATGTTTGTCTCATTTGAGGCACAAAGTTAGGCTTTATAAAATTGGAGAGAAG
* ** *
2724 AAAGCCTTTTTGAGAAGCC-AAGCATCATTATCATCTATAATAATGGA-A-GACTTTGTTTATGG
384 AAAGCCTTTTTGAGAAGCCAAAGCATCAATATCATCTATCCTAAT-GACACAACTTTGTTTATGG
* *
2786 -CCATAATCCTAAAAAAGAAT--G
448 TGCA-AATCCT-GAAAAGAATGCG
* * * * * * * * *
2807 ATTTCGTATGACTATTCACGTTTGCCTCTTTTGAGGGAGGCAACTTTGATTCGATC-TAAACGGT
1 A-TTAGTATGACTATTCATGTTTGTCTCCTTTGAGGGATG-AACTTTGATTCTATCAAAAATGAT
* * * * ** * *
2871 GTAAAGAAAAGCTTTTCTTGCGACACCAAATCA-CAATGTCATGTATCCTAATGATGGGAATGTG
64 GGAAAGAAAAGTTTTTCTTGCGACACCATATCATCAATGTCATGCATCCTAATGAACGCAATGTC
* * * * ** *
2935 TTTTTGGTT-TCGAT-TTTGGGAAAGAAAGGAGACTGTTATGAGAGTCGA-TGCTAGTCTTATTT
129 TTTTT--TTCCCAATCTTT--AAAAGAATGGAGACT-TTACAAGAATC-ATTGCTAGTCTTATTT
* * * *
2997 ACGGGATGGAACATTGATTTTAA-GAAAATAGGGTAAGGAAAAGA-TTTCGATGCAAAAGAAAAT
188 -TGGGAT-GAACTTTGATTTTAACGAAAATAAGGCAAGGAAAAGATTTTCGATGCAAAAGAAAAT
** * * * * * *
3060 -ATCAATATCGTTTATTCCGAATGAGGA-AATGTTTTTATAGTGTCAAATCA-GAGATGAATGAT
251 GATCGGTATCATTTA-TCCTAATGAGGAGAATGTTTTTATAGTGTCTAATCACAAAATGAATGAA
* * * * **
3122 GATCATTGCTAGAATCTATATTTGACTCATTTGAGGCAC-AAGTTAGAC-TTGCAAAATTGGAGA
315 GATCATTACTAGAATCTATGTTTGTCTCATTTGAGGCACAAAGTTAGGCTTTATAAAATTGGAGA
* * *
3185 GAACGAAAGCCTTTCTTGAGAAGCCAACGCATCACTAT-GTCTATCCTAATGACACAACTTTGTT
380 GAA-GAAAGCCTTT-TTGAGAAGCCAAAGCATCAATATCATCTATCCTAATGACACAACTTTGTT
*
3249 TATGGTTGCAAATCCTGAAAATAATGCG
443 TATGG-TGCAAATCCTGAAAAGAATGCG
3277 ATTAGTATGACTATTCATGTTTGTCTCCTTTGAGGGATTGAACTTTGATTCTATCAAAAATGATG
1 ATTAGTATGACTATTCATGTTTGTCTCCTTTGAGGGA-TGAACTTTGATTCTATCAAAAATGATG
**
3342 GAAAG-AAAGTTTTTCTTGCGACACCATATCATCAATGTCATGCAT-CTACCGAACGCAATGTCT
65 GAAAGAAAAGTTTTTCTTGCGACACCATATCATCAATGTCATGCATCCTAATGAACGCAATGTCT
3405 TTTTTTCCCAATCTTTAAAAGAATGGAGACTTTACAAGCAATCATTGCTAGTCTTATTTTGGGAT
130 TTTTTTCCCAATCTTTAAAAGAATGGAGACTTTACAAG-AATCATTGCTAGTCTTATTTTGGGAT
3470 GAACTTTGATTTTAACGAAAATAAGGCAAGG-AAAGATTTTC-ATGCAAAAGAAAATGATCGGTA
194 GAACTTTGATTTTAACGAAAATAAGGCAAGGAAAAGATTTTCGATGCAAAAGAAAATGATCGGTA
*
3533 TCATTTATCCTAATGAGG-GAATGTTTTTATCGTGTCTAATCACAAAATGAATGAAGATCATTAC
259 TCATTTATCCTAATGAGGAGAATGTTTTTATAGTGTCTAATCACAAAATGAATGAAGATCATTAC
* * * *
3597 TAGAATCCATGTTTGTCTCATTTGAGGCACGAAGTTAGGCTTT-TAACATTGGTG-GAAGAAAGC
324 TAGAATCTATGTTTGTCTCATTTGAGGCACAAAGTTAGGCTTTATAAAATTGGAGAGAAGAAAGC
* ** * ** ***
3660 CTTTTTGAGAAGCCAAAGCATC-AT-TTATTCTATTATAACGGA-AGGGACTTTGTTTATGCACC
389 CTTTTTGAGAAGCCAAAGCATCAATATCA-TCTATCCTAA-TGACA-CAACTTTGTTTATGGTGC
* * *
3722 TAATCCTAAAAAGAATGAGG
451 AAATCCTGAAAAGAATG-CG
* * * * * * * * *
3742 ATTCGTATGACTATTCACGTTTGCCT-CTTTGAGGGAGGAACTTTGATTCGATCTAAAACGGTGT
1 ATTAGTATGACTATTCATGTTTGTCTCCTTTGAGGGATGAACTTTGATTCTATCAAAAATGATGG
* * * ** * *
3806 AAAGAAAAG-CTTTC-TGCGACACCAAATCATCAATGTCATGTATCCTAATGATGGGAATGTGTT
66 AAAGAAAAGTTTTTCTTGCGACACCATATCATCAATGTCATGCATCCTAATGAACGCAATGTCTT
* * * * * ** *
3869 TTTGGTT-TCGAT-TTTGGGAAAGAAAGGAGACGTTATGAG-ATCA-TGCTAGTCTTATTTACGG
131 TTT--TTCCCAATCTTT--AAAAGAATGGAGACTTTACAAGAATCATTGCTAGTCTTATTT-TGG
* * * *
3930 GATG-ACATTGATTTTAAGGAAAATAGGGTAAGG--AA-A-TTTCGATGC---AGAAAAT--TC-
191 GATGAACTTTGATTTTAACGAAAATAAGGCAAGGAAAAGATTTTCGATGCAAAAGAAAATGATCG
* * * * * * *
3984 ATCATCGTTTATCCGAATAAGGAG-ATGTTTTTATAGTGTCAAATCA-GAAATG-ATGATGATCA
256 GT-ATCATTTATCCTAATGAGGAGAATGTTTTTATAGTGTCTAATCACAAAATGAATGAAGATCA
* * * *
4046 TTGCTAGAATCTATATTTGACTCATTTGAGGCACAAAGTTAGACTTTGCA-AAAATTGGAGAGAA
320 TTACTAGAATCTATGTTTGTCTCATTTGAGGCACAAAGTTAGGCTTT--ATAAAATTGGAGAGAA
4110 GAAAGCCTTTCTTGAGAAGCCAAAGCATCAATATCATCTA-CCTAATGACACAACTTTGTTTATG
383 GAAAGCCTTT-TTGAGAAGCCAAAGCATCAATATCATCTATCCTAATGACACAACTTTGTTTATG
*
4174 GTGCCAAATCCTGAAAATAATGCG
447 GTG-CAAATCCTGAAAAGAATGCG
*
4198 A-TA-TATGACTATTCTTGTTTGTCTCCTTTGAGGGATGAAC-TTGATTCTATCAAAAAT--TGG
1 ATTAGTATGACTATTCATGTTTGTCTCCTTTGAGGGATGAACTTTGATTCTATCAAAAATGATGG
* *
4258 AAAGAAAAGTTTTTCTTGCGACACCATATCATCAATGTCATACATCCTAACGAACGCAATGTCTT
66 AAAGAAAAGTTTTTCTTGCGACACCATATCATCAATGTCATGCATCCTAATGAACGCAATGTCTT
*
4323 TTTTTCCCAATCTTTAAAAGAATGGAGACTTTACAAGAATCCTTGCTAGTCTTATTTTTGGGATG
131 TTTTTCCCAATCTTTAAAAGAATGGAGACTTTACAAGAATCATTGCTAGTCTTA-TTTTGGGATG
*
4388 AACTTTGATTTTAACGAAAATAAGGCAAGGAAAAGATTTAC-ATGC-AAAGAAAATGATCGGTAT
195 AACTTTGATTTTAACGAAAATAAGGCAAGGAAAAGATTTTCGATGCAAAAGAAAATGATCGGTAT
*
4451 CATTTATCCTAATGAGGAGATTG-TTTTATAGTGTCTAATCACAAAATGAATGAAGATCATTACT
260 CATTTATCCTAATGAGGAGAATGTTTTTATAGTGTCTAATCACAAAATGAATGAAGATCATTACT
* * *
4515 AGAATCTATGTTTGTCTCATTTGAGGCACGAAGTTAGGCTTTATAGCAATT--TG-GAAGAAAGC
325 AGAATCTATGTTTGTCTCATTTGAGGCACAAAGTTAGGCTTTATA-AAATTGGAGAGAAGAAAGC
* ** * ** **
4577 CTTTTTGAGAAG-C-AATCATC-AT-TCATCTATAATAACGGGA-AGACTTTGTTTATGGCACCT
389 CTTTTTGAGAAGCCAAAGCATCAATATCATCTATCCTAATGACACA-ACTTTGTTTATGG-TGC-
* * *
4637 AATTCCTAAAAAGAATGAGG
451 AAATCCTGAAAAGAATG-CG
** * * * * *
4657 ATTAGTATGACTATTCACATTTGCCT-CTTTGA-GGA-GGACTTTGATTCGATCTAAAACG-TGT
1 ATTAGTATGACTATTCATGTTTGTCTCCTTTGAGGGATGAACTTTGATTCTATCAAAAATGATG-
* * * * ** *
4718 TAAAGAAAAGCTTTTCTTGCGACACCAAATCATCAATGTCATGTATCCTAATGATGGGAAGTGT-
65 GAAAGAAAAGTTTTTCTTGCGACACCATATCATCAATGTCATGCATCCTAATGAACGCAA-TGTC
* * * * * * * **
4782 TTTTGGTTT--CGAT-TTTGGAAAGAAAGGAGACTTT-TATGAGATCGA-TCCT-GGCTTATTAC
129 TTTT--TTTCCCAATCTTT-AAAAGAATGGAGACTTTACAAGA-ATC-ATTGCTAGTCTTATTTT
* * * * *
4841 GGGATGAAC-ATGATTTTAA-GGAAATAGGGTAAGGAAAAGA--TTCGATGCAAAAGAAAATTAT
189 GGGATGAACTTTGATTTTAACGAAAATAAGGCAAGGAAAAGATTTTCGATGCAAAAGAAAATGAT
* * * * * ** *
4902 C--AAT-AGTTTATCCGAATGAGGCGAATGTTTTTATCGTGTCAAATCA-ACGATGAATGATGAT
254 CGGTATCA-TTTATCCTAATGAGGAGAATGTTTTTATAGTGTCTAATCACAAAATGAATGAAGAT
* * * *
4963 CATTGCTAGAAATTCTAT-TTTGACTTA-TTGAGGCACAAAGTTAGACTTTGCA-AAAATTGGAG
318 CATTACTAG-AA-TCTATGTTTGTCTCATTTGAGGCACAAAGTTAGGCTTT--ATAAAATTGGAG
**
5025 AGAAGAAAGCCTTTCTTGAGAAGCCAAAGCATC-ATATTGTC-ATCCTAATGACACAAC-TTGTT
379 AGAAGAAAGCCTTT-TTGAGAAGCCAAAGCATCAATATCATCTATCCTAATGACACAACTTTGTT
*
5087 TATGGTGCCAAT-CTGAAAA-AATG-G
443 TATGGTGCAAATCCTGAAAAGAATGCG
5111 ATTAGTATGACTATTCATGTTTGTCCTCCTTTGAGGGATGAACTTTGATTCTATCAAAAATGATG
1 ATTAGTATGACTATTCATGTTTGT-CTCCTTTGAGGGATGAACTTTGATTCTATCAAAAATGATG
*
5176 GAAAGAAAAGTTTTTTCTTGCGACCACCATATCATCAATGTCATGCATCCT-ACGAA-GCAATGT
65 GAAAGAAAAG-TTTTTCTTGCGA-CACCATATCATCAATGTCATGCATCCTAATGAACGCAATGT
*
5239 C-TTTTTTCCCAATCTTTAAAAGAATGGAGACTTTAAAAGAATCATTGCTAG--TTATTTTGGGA
128 CTTTTTTTCCCAATCTTTAAAAGAATGGAGACTTTACAAGAATCATTGCTAGTCTTATTTTGGGA
5301 T-AACTTTGATTTTAACGAAAATAAGGCAAGGAAAAGATTTCTC-ATGC--AAG-AAAT-AT-GG
193 TGAACTTTGATTTTAACGAAAATAAGGCAAGGAAAAGATTT-TCGATGCAAAAGAAAATGATCGG
5359 TATCATTTATCCTAATGA-GAG-ATGTTTTT-TAAGTGT-TAATCACAAAATGAATGAAGATCAA
257 TATCATTTATCCTAATGAGGAGAATGTTTTTAT-AGTGTCTAATCACAAAATGAATGAAGATC-A
** * * * *
5420 TTACTAGAATCCCTGTTTGTCTCATTTGAGGCAC-AAGTTAGGCTTTATAACACTGGTGGGAAAG
320 TTACTAGAATCTATGTTTGTCTCATTTGAGGCACAAAGTTAGGCTTTATAAAATTGGAGAG-AAG
* ** **
5484 AAAGCCTTTTTGAGAAGCCAAAGCCTCAAGTTATCATCTATAATAATGGGA-AGGACTTTGTTTA
384 AAAGCCTTTTTGAGAAGCCAAAGCATCAA--TATCATCTATCCTAAT--GACACAACTTTGTTTA
* *
5548 TGGTGCATAATCCTAAAAAGAATGGAG
445 TGGTGCA-AATCCTGAAAAGAAT-GCG
* * * * * * * *
5575 TATTAGTATGACTATTCACAGTTTG-CT--TTTTAAGGAGGAACTTTGATTCGATC-TAAACGGT
1 -ATTAGTATGACTATTCA-TGTTTGTCTCCTTTGAGGGATGAACTTTGATTCTATCAAAAATGAT
* * * * * ** *
5636 -GTAAGAAAAGCTTTTCTTGCGACACCAAATCATCAACGTCATTGTAATCCTAATGATGGGAATG
64 GGAAAGAAAAGTTTTTCTTGCGACACCATATCATCAATGTCA-TG-CATCCTAATGAACGCAATG
* * * * * ** *
5700 TGTTTTTGGTT-TCGAT-TTTGGGAAAGAAAGGAGACTGTTATGAGAGTCGA-TGCTAGTCTTAT
127 TCTTTTT--TTCCCAATCTTT--AAAAGAATGGAGACT-TTACAAGAATC-ATTGCTAGTCTTAT
* * * * *
5762 TTACGGGATGAACATTGATTTTAAGGAAAATAGGGTAAGGAAAAGA-TTTCGATGC-AAAGAAAA
186 TT-TGGGATGAACTTTGATTTTAACGAAAATAAGGCAAGGAAAAGATTTTCGATGCAAAAGAAAA
* ** * * *
5825 TTATCAATATCGTTTATGTCC-AATGA-GAGAATGTTTTTATAGTGTC-AATCAGAAACTGAATG
250 TGATCGGTATCATTTA--TCCTAATGAGGAGAATGTTTTTATAGTGTCTAATCACAAAATGAATG
* * * * **
5887 ATGATCATTGCTAGAATTCTAT-TTTGACTCATTTGA-GCACAAAAGTTAGACTTTGCAAAATTG
313 AAGATCATTACTAGAA-TCTATGTTTGTCTCATTTGAGGCAC-AAAGTTAGGCTTTATAAAATTG
*
5950 GAGAGAAGAAAGCCTTTCTTGAGAAGCCAAAGCATCAATATCGTCTATCCTAATGACACAACTTT
376 GAGAGAAGAAAGCCTTT-TTGAGAAGCCAAAGCATCAATATCATCTATCCTAATGACACAACTTT
* *
6015 GTTTAT-GTGCCAAATCTTGAAAATAATGCG
440 GTTTATGGTG-CAAATCCTGAAAAGAATGCG
6045 ATTAGTATGACTATTTCATGTTTGTCTCC-TTGAGGGATGAACTTTGATTCTATCAAAAATGATG
1 ATTAGTATGACTA-TTCATGTTTGTCTCCTTTGAGGGATGAACTTTGATTCTATCAAAAATGATG
6109 GAAAGAAAAGTTTTTCTTGCGACACCA-ATCA-CAATGTCATGCATCCTAACTGAACGCAATGTC
65 GAAAGAAAAGTTTTTCTTGCGACACCATATCATCAATGTCATGCATCCTAA-TGAACGCAATGTC
*
6172 TTTTTTTTCCCAATCTTTAAAAGAATGGAGACTTAAC-AGAA-CA-TGCTAGTCTTATTTTTGGG
129 -TTTTTTTCCCAATCTTTAAAAGAATGGAGACTTTACAAGAATCATTGCTAGTCTTA-TTTTGGG
*
6234 ATGAACTTTGATTTTAACGAAAATAAGGCAAGG-AAAGATGTTC-ATGC-AAAGAAAATGATCGG
192 ATGAACTTTGATTTTAACGAAAATAAGGCAAGGAAAAGATTTTCGATGCAAAAGAAAATGATCGG
6296 TATCATTTATCCTAATGA-GAG-ATG-TTTTATAGTGGTCTAATCACAAAATGAATGAAGATCAT
257 TATCATTTATCCTAATGAGGAGAATGTTTTTATAGT-GTCTAATCACAAAATGAATGAAGATCAT
* * * * *
6358 TACTAGAATCCATG-TTGTCGCA-TTGAGGCACGAAGTTAGGCTTTATACCAA-TGGGGAGAAGA
321 TACTAGAATCTATGTTTGTCTCATTTGAGGCACAAAGTTAGGCTTTATA-AAATTGGAGAGAAGA
* **
6420 AAGCCTTTTTGAGAAGCCAAAGCATCATTATCATCTA---TAATGGGA-AGAC-TTGTTTATGG-
385 AAGCCTTTTTGAGAAGCCAAAGCATCAATATCATCTATCCTAATGACACA-ACTTTGTTTATGGT
* *
6479 GCACCTAATCCTAAAAAGAATGAGG
449 GCA---AATCCTGAAAAGAATG-CG
* * * * * * * * * *
6504 ATTAGTATGACTATGCACGTTTGCCTCTTTTG-GGGAGGAACTTTGATTCGATCTAAAACGGTGT
1 ATTAGTATGACTATTCATGTTTGTCTCCTTTGAGGGATGAACTTTGATTCTATCAAAAATGATGG
* * * ** *
6568 AAAGAAAAGCTTTTCTTGCTTGCGACACCAAATCATCAATTTCATGTATCCTAATGATGGGAATG
66 AAAGAAAAG--TTT-TT-CTTGCGACACCATATCATCAATGTCATGCATCCTAATGAACGCAATG
* * * ** * ** *
6633 TGTTGTTTGGTT-TCGAT-TTGGGAAAGAAAGGAGACTGTTATGAGAGTCGATTGCTAGTCTTAT
127 TCTT-TTT--TTCCCAATCTT-TAAAAGAATGGAGACT-TTACAAGAATC-ATTGCTAGTCTTAT
* * * * * *
6696 TTAGGGATGAACATTGGTTTTAAGGAAAAATAGGGTAAGGAAAA-ATTTTCGATGCAAAAGAAAA
186 TTTGGGATGAACTTTGATTTTAACG-AAAATAAGGCAAGGAAAAGATTTTCGATGCAAAAG--AA
* ** * * * *
6760 AATTATCAATATGCGTTTATCCGAAT-A-G-GAATGTTTTTA-AGTGTCAAATCAGAAAAATGAA
248 AATGATCGGTAT-CATTTATCCTAATGAGGAGAATGTTTTTATAGTGTCTAATCA-CAAAATGAA
* * * * * *
6821 TGATGATCATTAGCTCGAATCTCTATATTTGACTAATTTGAGGCACAAAGTTAGACTTTGCA-AA
311 TGAAGATCATTA-CTAGAA--TCTATGTTTGTCTCATTTGAGGCACAAAGTTAGGCTTT--ATAA
*
6885 AATTGGAGAGAAG-AAGCGCTTCTTGAGAAGCCAAAGCATCAATATCATCTATCCTAATGACACA
371 AATTGGAGAGAAGAAAGC-CTTTTTGAGAAGCCAAAGCATCAATATCATCTATCCTAATGACACA
*
6949 ACTTTGTTTATGGTGCCAAATCCTG-AAATAATGCG
435 ACTTTGTTTATGGTG-CAAATCCTGAAAAGAATGCG
*
6984 ATTAGTATGACTATTCTTGTTTGTCTCCTTTGAGGGATGAACTTTGATTCTATCAAAAATGATGG
1 ATTAGTATGACTATTCATGTTTGTCTCCTTTGAGGGATGAACTTTGATTCTATCAAAAATGATGG
*
7049 AAAG-AAAGTTTTTCTTGCGACACCCATATCATCAATGTCAT-CATCCTAACGAACGCAATGTCT
66 AAAGAAAAGTTTTTCTTGCGACA-CCATATCATCAATGTCATGCATCCTAATGAACGCAATGTCT
*
7112 TTTTTTCCCAATCTTTAAAAGAATGGAGACTTTACAAGAATCCTTGCTAGTCTTATTTTTGGGAT
130 TTTTTTCCCAATCTTTAAAAGAATGGAGACTTTACAAGAATCATTGCTAGTCTTA-TTTTGGGAT
7177 GAACTTTGATTTTAACGAAAATAAGGCAAGGAAAAGATTTTAC-ATGCAAAAGAAAATGATC-GT
194 GAACTTTGATTTTAACGAAAATAAGGCAAGGAAAAGATTTT-CGATGCAAAAGAAAATGATCGGT
*
7240 ATCATTTATCCTAA-GAGGGAGATTGTTTTTATAGTGTCTAATCACAAAATGAATG-AGATCATT
258 ATCATTTATCCTAATGA-GGAGAATGTTTTTATAGTGTCTAATCACAAAATGAATGAAGATCATT
* * *
7303 ACTAGAATCTATGTTTGTCTCATTTGA-GCACGAAGTTAGGCTTTATAGCAATTGGTGA-AA-AA
322 ACTAGAATCTATGTTTGTCTCATTTGAGGCACAAAGTTAGGCTTTATA-AAATTGGAGAGAAGAA
* ** * ** *
7365 AGCCTTTTTGAG-AGCCAAAGCATCATTATCATCTATAATAACGGGA-AGACTTTGTTTATGGCA
386 AGCCTTTTTGAGAAGCCAAAGCATCAATATCATCTATCCTAATGACACA-ACTTTGTTTATGG-T
* * * *
7428 CCTAATCCTAAAAAGAATGAGG
449 GCAAATCCTGAAAAGAATG-CG
* * * * * * * * *
7450 ATTAGTATGACTATTCA-CTTTGCCTCTTTTGAGGGAGGAACTTTGATTCGATCTAAAACGGTGT
1 ATTAGTATGACTATTCATGTTTGTCTCCTTTGAGGGATGAACTTTGATTCTATCAAAAATGATGG
* * ** * *
7514 AAAG-AAAGCTTTTCTTGCGACACCA-ATCATCAATGTCATGTATCCTAATGATGGGAATGTGTT
66 AAAGAAAAGTTTTTCTTGCGACACCATATCATCAATGTCATGCATCCTAATGAACGCAATGTCTT
* * ** * ** * *
7577 GTTTGGTT-TCGAT-TTGGGAAAGAAAGGAGACTGTTATGAGAGTCGA-T-CTAGTCTTATTTAC
131 -TTT--TTCCCAATCTT-TAAAAGAATGGAGACT-TTACAAGAATC-ATTGCTAGTCTTATTT-T
* * * * *
7638 GGG-TGAACATTGATTTTAAGGAAAATAGGGTAAGGAAAAGA-TTTCGATGCAAAAG-AAATTAT
189 GGGATGAACTTTGATTTTAACGAAAATAAGGCAAGGAAAAGATTTTCGATGCAAAAGAAAATGAT
** * * * *
7700 CAATATCGTTTATCCGAATGAGGAGAATGTTTTTATAGTGTC-AATCA-GAAATGAATGATGATC
254 CGGTATCATTTATCCTAATGAGGAGAATGTTTTTATAGTGTCTAATCACAAAATGAATGAAGATC
* * * *
7763 ATTGCTAG-ATCTATATTTGACTCA-TTGAGGCACAAAGTTAGACTTTGCA-AAAATTGGAGAGA
319 ATTACTAGAATCTATGTTTGTCTCATTTGAGGCACAAAGTTAGGCTTT--ATAAAATTGGAGAGA
* **
7825 AGAAAACCTTTCTTGAGAAGCCAAAGCATCAATATTGTCTATCCTAATGACACAACTTTGTTTAT
382 AGAAAGCCTTT-TTGAGAAGCCAAAGCATCAATATCATCTATCCTAATGACACAACTTTGTTTAT
*
7890 GGTGCCAAATCCTGAAAATAATGCG
446 GGTG-CAAATCCTGAAAAGAATGCG
7915 ATTAGTATGACTATTCATGTTTGTCTCCTTTGAGGGATGAACTTTGATTCTATCAAAAATGATGG
1 ATTAGTATGACTATTCATGTTTGTCTCCTTTGAGGGATGAACTTTGATTCTATCAAAAATGATGG
*
7980 AAAGAAAAGTTTTTCTTGCGACACCATATCATCAATGTCATGCATCCTAACGAAACGCAATGTCT
66 AAAGAAAAGTTTTTCTTGCGACACCATATCATCAATGTCATGCATCCTAATG-AACGCAATGTCT
8045 TTTTTTCCCAATCTTTAAAAGAATGGAGACTTTACAAGAATCATTGCTAGTCTTATTTT-GGATG
130 TTTTTTCCCAATCTTTAAAAGAATGGAGACTTTACAAGAATCATTGCTAGTCTTATTTTGGGATG
*
8109 AACTTTGATTTTAACGAAAATAAGGCAAGGAAAAGATTTAC-ATGCAAAAG-AAATGATCGGTAT
195 AACTTTGATTTTAACGAAAATAAGGCAAGGAAAAGATTTTCGATGCAAAAGAAAATGATCGGTAT
*
8172 CATTTATCCTAATGAGGAGAGTTGTTTTTATAGTGTCTAATCACAAAATGAATGAAGATCATTAC
260 CATTTATCCTAATGAGGAGA-ATGTTTTTATAGTGTCTAATCACAAAATGAATGAAGATCATTAC
* *
8237 TAGAATCTATG-TTGTCTCATTTGAGGCACGAAGTTAGGCTTTATAACAATTGGTG-G-A-AAAG
324 TAGAATCTATGTTTGTCTCATTTGAGGCACAAAGTTAGGCTTTATAA-AATTGGAGAGAAGAAAG
* * ** * * **
8298 CCTTTTGGAGAAGCCAAAGCATCATTAATCATCTATATTAAGGGA-A-GACTTTGTTTATGGCAC
388 CCTTTTTGAGAAGCCAAAGCATCAAT-ATCATCTATCCTAA-TGACACAACTTTGTTTATGG-TG
* * *
8361 CTAATCCTAAAAAGAATGAGG
450 CAAATCCTGAAAAGAATG-CG
* * * * * * * *
8382 ATTAGTA-GACTATTCACGTTTGCCTCTTTTGA-GGAGGAAC-TTGATTCGATCTAAAACGGT-G
1 ATTAGTATGACTATTCATGTTTGTCTCCTTTGAGGGATGAACTTTGATTCTATCAAAAATGATGG
* * * * ** * *
8443 -TA-AAAAGCTTTTCTTGCGACACCAAATCATCAATGTCATGTATCCTAATGATGGGAATGTGTT
66 AAAGAAAAGTTTTTCTTGCGACACCATATCATCAATGTCATGCATCCTAATGAACGCAATGTCTT
* * * * ** * *
8506 TTTGGTT-TCGAT-TTTGGGAAAGAAAGGAGACTGTTATGAGAGTCGA-TGCTAGTCTT-TTTAC
131 TTT--TTCCCAATCTTT--AAAAGAATGGAGACT-TTACAAGAATC-ATTGCTAGTCTTATTT-T
* * * * *
8567 GGGATGAACATTGATTTTAAGGAAAATAGGGTAAGG-AAA-A-TTTCGATGC-AAAGAAAATTAT
189 GGGATGAACTTTGATTTTAACGAAAATAAGGCAAGGAAAAGATTTTCGATGCAAAAGAAAATGAT
** * * * *
8628 CAATATCGTTTATCCGAAT-AGGAGAATG-TTTTATAGTGTCAAATCA-AAAATGAATGATGATC
254 CGGTATCATTTATCCTAATGAGGAGAATGTTTTTATAGTGTCTAATCACAAAATGAATGAAGATC
* * *
8690 ATTGCTAGAATCTA--TTTGACTCATTTGAGGCACAAAGTTAGACTTTGCA-AAAATTGGAGAGA
319 ATTACTAGAATCTATGTTTGTCTCATTTGAGGCACAAAGTTAGGCTTT--ATAAAATTGGAGAGA
8752 AGAAAGCCTTTCTTGAGAA-CCAAAGCATCAATATCATCTATCCTAATGACACAAC-TTGTTTAT
382 AGAAAGCCTTT-TTGAGAAGCCAAAGCATCAATATCATCTATCCTAATGACACAACTTTGTTTAT
*
8815 GGTGCCAAATCCTGAAAATAATGCG
446 GGTG-CAAATCCTGAAAAGAATGCG
8840 ATTAGTATGACTATTCATGTTTGTCTCC-TTGAGGGATGAACTTTGATTCTATCAAAAATGATGG
1 ATTAGTATGACTATTCATGTTTGTCTCCTTTGAGGGATGAACTTTGATTCTATCAAAAATGATGG
* *
8904 AAAGAAAAGTTTTTCTTGCGACACCATATCATCAATGTCATACATCCTACAACGAACGCAATGTC
66 AAAGAAAAGTTTTTCTTGCGACACCATATCATCAATGTCATGCATCCT--AATGAACGCAATGTC
*
8969 TTTTTTTTCCCAATCTTT-AAAGAATGGAGACTTTACAAGAATCCTTGCTAGTCTTATTTTTTGG
129 -TTTTTTTCCCAATCTTTAAAAGAATGGAGACTTTACAAGAATCATTGCTAGTCTTA--TTTTGG
*
9033 GATGAACTTTGATTTTAACGAAAATAAGGCAAGGAAAAGATTTAC-ATGCAAAA-AAAATGATCG
191 GATGAACTTTGATTTTAACGAAAATAAGGCAAGGAAAAGATTTTCGATGCAAAAGAAAATGATCG
*
9096 GTATCATTTATCCTAATGAGGAGATTGTTTTTATAGTGTCTAATCACAAAATGAATGAAGATCA-
256 GTATCATTTATCCTAATGAGGAGAATGTTTTTATAGTGTCTAATCACAAAATGAATGAAGATCAT
*
9160 TACTAGAATCTATG-TTGTCTCATTTGAGGCAC-AAGTTAGGCTTTATAACAATT-G-GTGAAG-
321 TACTAGAATCTATGTTTGTCTCATTTGAGGCACAAAGTTAGGCTTTATAA-AATTGGAGAGAAGA
** * **
9220 AAGCC-TTTTGAGAAGCCAAAGCATC-AT-TCATCTATAATAACGGGA-AGACTTTGTTTATGGC
385 AAGCCTTTTTGAGAAGCCAAAGCATCAATATCATCTATCCTAATGACACA-ACTTTGTTTATGG-
** * * *
9281 ACCTAATCCTAAAAAGAATGAGG
448 TGCAAATCCTGAAAAGAATG-CG
* * * * * * * * *
9304 ATTAGTATGACTATTCACGTTTGCCTCTTTTGAGGGAGGAACTTTGATTCGATCTAAAACGGTGT
1 ATTAGTATGACTATTCATGTTTGTCTCCTTTGAGGGATGAACTTTGATTCTATCAAAAATGATGG
* * * ** * *
9369 AAAGAAAAGCTTTTCTTGCGACACCAAATCATCAATGTCATGTATCCTAATGATGGGAATGTGTT
66 AAAGAAAAGTTTTTCTTGCGACACCATATCATCAATGTCATGCATCCTAATGAACGCAATGTCTT
* * * * ** * *
9434 TTTGGTT-TCGAT-TTTGGGAAAGAAAGGAGACTGTTATGAGAGTCGA-TGCTAGTCTTATTTAC
131 TTT--TTCCCAATCTTT--AAAAGAATGGAGACT-TTACAAGAATC-ATTGCTAGTCTTATTT-T
* * * * *
9496 GGGATGAACATTGATTTTAAGGAAAATAGGGTAAGGAAAAGA-TTTCGATGCAAAAGAAAATTAT
189 GGGATGAACTTTGATTTTAACGAAAATAAGGCAAGGAAAAGATTTTCGATGCAAAAGAAAATGAT
** * * * * * *
9560 CAATATCGTTTATCCGAATGAGGAAGAATG-TTTTATAGTGTCAAATCAGAAGATGAATGATGAT
254 CGGTATCATTTATCCTAATGAGG-AGAATGTTTTTATAGTGTCTAATCACAAAATGAATGAAGAT
* * * * *
9624 CATTGCTAGAATCTATATTTGACTTATTTGAGGCACAAAGTTAGACTTTGCA-AAAATTGGAGAG
318 CATTACTAGAATCTATGTTTGTCTCATTTGAGGCACAAAGTTAGGCTTT--ATAAAATTGGAGAG
**
9688 AAGAAAGCCTTTCTTGAGAAGCCAAAGCATCAATATTGTCTATCCTAATGACACAACTTTGTTTA
381 AAGAAAGCCTTT-TTGAGAAGCCAAAGCATCAATATCATCTATCCTAATGACACAACTTTGTTTA
*
9753 TGGTGCCAAATCCTGAAAATAATGCG
445 TGGTG-CAAATCCTGAAAAGAATGCG
9779 ATTAGTATGACTATTCATGTTTGTCTCCTTTGAGGGATGAACTTTGATTCTATCAAAAATGATGG
1 ATTAGTATGACTATTCATGTTTGTCTCCTTTGAGGGATGAACTTTGATTCTATCAAAAATGATGG
*
9844 AAAGAAAAGTTTTTCTTGCGACACCATATCATCAATGTCATGCATCCTAACGAACGCAATGTCTT
66 AAAGAAAAGTTTTTCTTGCGACACCATATCATCAATGTCATGCATCCTAATGAACGCAATGTCTT
9909 TTTTTCCCAATCTTTAAAAGAATGGAGACTTTACAAGAATCATTGCTAGTCTTATTTTTGGGATG
131 TTTTTCCCAATCTTTAAAAGAATGGAGACTTTACAAGAATCATTGCTAGTCTTA-TTTTGGGATG
9974 AACTTTGATTTTAACGAAAATAAGGCAAGGAAAAGATTTTAC-ATGCAAAAGAAAATGATCGGTA
195 AACTTTGATTTTAACGAAAATAAGGCAAGGAAAAGATTTT-CGATGCAAAAGAAAATGATCGGTA
*
10038 TCATTTATCCTAATGAGGAGATTG-TTTTATAGTGTCTAATCACAAAATGAATGAAGATCATTAC
259 TCATTTATCCTAATGAGGAGAATGTTTTTATAGTGTCTAATCACAAAATGAATGAAGATCATTAC
* * *
10102 TAGAATCTATG-TTGTCTCATTTGAGGCACGAAGTTAGGCTTTA-AACAATTGGTGGGAAGAAAG
324 TAGAATCTATGTTTGTCTCATTTGAGGCACAAAGTTAGGCTTTATAA-AATTGGAGAGAAGAAAG
* ** * ** **
10165 CCTTTTTGAGAAGCCAAAGCATCATTATCATCTATAATAACGGGA-AGACTTTGTTTATGGCACC
388 CCTTTTTGAGAAGCCAAAGCATCAATATCATCTATCCTAATGACACA-ACTTTGTTTATGG-TGC
* * *
10229 TAATCCTAAAAAGAATGAGG
451 AAATCCTGAAAAGAATG-CG
* * * * * * * * *
10249 ATTAGTATGACTATTCACGTTTGCCTCTTTTGAGGGAGGAACTTTGATTCGATCTAAAACGGTGT
1 ATTAGTATGACTATTCATGTTTGTCTCCTTTGAGGGATGAACTTTGATTCTATCAAAAATGATGG
* * * ** * *
10314 AAAGAAAAGCTTTTCTTGCGACACCAAATCATCAATGTCATGTATCCTAATGATGGGAATGTGTT
66 AAAGAAAAGTTTTTCTTGCGACACCATATCATCAATGTCATGCATCCTAATGAACGCAATGTCTT
* * * * ** * *
10379 TTTGGTT-TCGAT-TTTGGGAAAGAAAGGAGACTGTTATGAGAGTCGA-TGCTAGTCTTATTTAC
131 TTT--TTCCCAATCTTT--AAAAGAATGGAGACT-TTACAAGAATC-ATTGCTAGTCTTATTT-T
* * * * *
10441 GGGATGAACATTGATTTTAA-GGAAA-AGGGTAAGGAAAAGA-TTTCGATGCAAAAGAAAATTAT
189 GGGATGAACTTTGATTTTAACGAAAATAAGGCAAGGAAAAGATTTTCGATGCAAAAGAAAATGAT
** * * * * * *
10503 CAATATCGTTTATCCGAATGAGGAGAATGTTTTTATAGTGTCAAATCAGAAGATGAATGATGATC
254 CGGTATCATTTATCCTAATGAGGAGAATGTTTTTATAGTGTCTAATCACAAAATGAATGAAGATC
* * * *
10568 ATTGCTAGAATCTATATTTGACTCATTTGAGGCACAAAGTTAGACTTTGCA-AAAATTGGAGAGA
319 ATTACTAGAATCTATGTTTGTCTCATTTGAGGCACAAAGTTAGGCTTT--ATAAAATTGGAGAGA
*
10632 AGAAAGCCTTTCTTGAGAAGCCAAAGCATCAATATCGTCTATCCTAATGACACAAC-TTGTTTAT
382 AGAAAGCCTTT-TTGAGAAGCCAAAGCATCAATATCATCTATCCTAATGACACAACTTTGTTTAT
*
10696 GGTGCCAAAT-CTGAAAATAATGCG
446 GGTG-CAAATCCTGAAAAGAATGCG
10720 ATTAGTATGACTATTCATGTTTGTCTCCTTTGAGGGATGAACTTTGATTCTATCAAAAATGATGG
1 ATTAGTATGACTATTCATGTTTGTCTCCTTTGAGGGATGAACTTTGATTCTATCAAAAATGATGG
*
10785 AAAGAAAAGTTTTTCTTGCGACACCATATCATCAATGTCATGCATCCT-ACGAACGCAATGTC-T
66 AAAGAAAAGTTTTTCTTGCGACACCATATCATCAATGTCATGCATCCTAATGAACGCAATGTCTT
10848 TTTTTCCCAATCTTTAAAAGAATGGAGAC-TTACAAGAATCATTGCTAGTCTTATTTTTGGGATG
131 TTTTTCCCAATCTTTAAAAGAATGGAGACTTTACAAGAATCATTGCTAGTCTTA-TTTTGGGATG
10912 AACTTTGATTTTAACGAAAATAAGGCAAGGAAAAGATTTTC-ATGCAAAAGAAAATGATCGGTAT
195 AACTTTGATTTTAACGAAAATAAGGCAAGGAAAAGATTTTCGATGCAAAAGAAAATGATCGGTAT
10976 CATTTATCCTAATGAGGAGAATGTTTTTATAGTGTCTAATCACAAAATGAATGAAGATCATTACT
260 CATTTATCCTAATGAGGAGAATGTTTTTATAGTGTCTAATCACAAAATGAATGAAGATCATTACT
* *
11041 AGAATCCATGTTTGTCTCATTTGAGGCAC-AAGTTAGGCTTTATAACAATTGGTG-GAAGAAAGC
325 AGAATCTATGTTTGTCTCATTTGAGGCACAAAGTTAGGCTTTATAA-AATTGGAGAGAAGAAAGC
* ** * ** ** *
11104 C-TTTTGAGAAGCCAAAGCATCATTATCATCTATAATAACGGGA-AGACTTTGTTTATGGCACTA
389 CTTTTTGAGAAGCCAAAGCATCAATATCATCTATCCTAATGACACA-ACTTTGTTTATGGTGCAA
* *
11167 ATCCTAAAAAGAATGAGG
453 ATCCTGAAAAGAATG-CG
* * * * * * * * *
11185 ATTAGTATGACTATTCACGTTTGCCTCTTTTGAGGGAGGAACTTTGATTCGATCTAAAACGGTGT
1 ATTAGTATGACTATTCATGTTTGTCTCCTTTGAGGGATGAACTTTGATTCTATCAAAAATGATGG
* * * ** * *
11250 AAAGAAAAGCTTTTCTTGCGACACCAAATCATCAATGTCATGTATCCTAATGATGGGAATGTGTT
66 AAAGAAAAGTTTTTCTTGCGACACCATATCATCAATGTCATGCATCCTAATGAACGCAATGTCTT
* * * * ** * *
11315 TGGTTT--CGAT-TTTGGGAAAGAAAGGAGACTGTTATGAGAGTC-TATGCTAGTCTTATTTACG
131 T-TTTTCCCAATCTTT--AAAAGAATGGAGACT-TTACAAGAATCAT-TGCTAGTCTTATTT-TG
* * * * * *
11376 GGATGAACATTGATTTTAAGGAAAATAGGGTAAGGAAAATA-TTTCGATGCAAAAG-AAATTATC
190 GGATGAACTTTGATTTTAACGAAAATAAGGCAAGGAAAAGATTTTCGATGCAAAAGAAAATGATC
** * * * * *
11439 AATATCGTTTATCCGAATGAGGAGAATGTTTTTATAGTGTCAAATCA-GAAATGAATGATGATCA
255 GGTATCATTTATCCTAATGAGGAGAATGTTTTTATAGTGTCTAATCACAAAATGAATGAAGATCA
* * * *
11503 TTGCTAGAATCTATATTTGACTCATTTGAGGCACAAAGTTAGACTTTGCA-AAAATTGGAGAGAA
320 TTACTAGAATCTATGTTTGTCTCATTTGAGGCACAAAGTTAGGCTTT--ATAAAATTGGAGAGAA
11567 GAAAGCCTTTCTTGAGAAGCCAAAGCATC-A-ATCATCTATCCTAATGACACAACTTTGTTTATG
383 GAAAGCCTTT-TTGAGAAGCCAAAGCATCAATATCATCTATCCTAATGACACAACTTTGTTTATG
*
11630 GTGCCAAATCCTGAAAATAATGCG
447 GTG-CAAATCCTGAAAAGAATGCG
11654 ATTAGTATGACTATTCATGTTTGTCTCCTTTGAGGGATGAACTTTGATTCTATCAAAAATGATGG
1 ATTAGTATGACTATTCATGTTTGTCTCCTTTGAGGGATGAACTTTGATTCTATCAAAAATGATGG
*
11719 AAAGAAAAGTTTTTTCTTGCGACACCATATCATCAATGTCAT--ATCCTAACGAACGCAATGTCT
66 AAAGAAAAG-TTTTTCTTGCGACACCATATCATCAATGTCATGCATCCTAATGAACGCAATGTCT
*
11782 TTTTTTCCCAATCTTTAAAAGAATGGAGACTTTACAAGAATCCTTGCTAGTCTTATTTTTGGGAT
130 TTTTTTCCCAATCTTTAAAAGAATGGAGACTTTACAAGAATCATTGCTAGTCTTA-TTTTGGGAT
*
11847 GAACTTTGATTTTAACGAAAAT-AGGCAAGGAAAAGATTTAC-ATGCAAAAGAAAATGATCGGTA
194 GAACTTTGATTTTAACGAAAATAAGGCAAGGAAAAGATTTTCGATGCAAAAGAAAATGATCGGTA
*
11910 TCATTTATCCTAATGAGGAGATTGTTTTTATAGTGTCTAATCACAAAATGAATGAAGATCATTAC
259 TCATTTATCCTAATGAGGAGAATGTTTTTATAGTGTCTAATCACAAAATGAATGAAGATCATTAC
* * * *
11975 TAGAATCTATGTTTGTCTCATTTGAGGCACGAAGTTAGGCTTTATAGCAATTGGTGGGAA-AGAA
324 TAGAATCTATGTTTGTCTCATTTGAGGCACAAAGTTAGGCTTTATA-AAATTGGAGAGAAGA-AA
*
12039 GCCTTTTTGAGAAGCCAAAGCATCATTATCATCTAT
387 GCCTTTTTGAGAAGCCAAAGCATCAATATCATCTAT
12075 AATAACGGGA
Statistics
Matches: 9552, Mismatches: 1443, Indels: 1196
0.78 0.12 0.10
Matches are distributed among these distances:
452 31 0.00
453 94 0.01
454 183 0.02
455 185 0.02
456 131 0.01
457 215 0.02
458 234 0.02
459 216 0.02
460 262 0.03
461 384 0.04
462 510 0.05
463 616 0.06
464 616 0.06
465 823 0.09
466 847 0.09
467 769 0.08
468 610 0.06
469 724 0.08
470 476 0.05
471 450 0.05
472 288 0.03
473 281 0.03
474 141 0.01
475 204 0.02
476 70 0.01
477 24 0.00
478 29 0.00
479 41 0.00
480 33 0.00
481 37 0.00
482 14 0.00
483 11 0.00
484 1 0.00
485 2 0.00
ACGTcount: A:0.34, C:0.14, G:0.20, T:0.32
Consensus pattern (469 bp):
ATTAGTATGACTATTCATGTTTGTCTCCTTTGAGGGATGAACTTTGATTCTATCAAAAATGATGG
AAAGAAAAGTTTTTCTTGCGACACCATATCATCAATGTCATGCATCCTAATGAACGCAATGTCTT
TTTTTCCCAATCTTTAAAAGAATGGAGACTTTACAAGAATCATTGCTAGTCTTATTTTGGGATGA
ACTTTGATTTTAACGAAAATAAGGCAAGGAAAAGATTTTCGATGCAAAAGAAAATGATCGGTATC
ATTTATCCTAATGAGGAGAATGTTTTTATAGTGTCTAATCACAAAATGAATGAAGATCATTACTA
GAATCTATGTTTGTCTCATTTGAGGCACAAAGTTAGGCTTTATAAAATTGGAGAGAAGAAAGCCT
TTTTGAGAAGCCAAAGCATCAATATCATCTATCCTAATGACACAACTTTGTTTATGGTGCAAATC
CTGAAAAGAATGCG
Found at i:3768 original size:934 final size:944
Alignment explanation
Indices: 1--12112 Score: 19953
Period size: 934 Copynumber: 13.0 Consensus size: 944
*
1 AAAGAATGAGGTATTAGTATGACTATTCCCGTTTG-CTCTTTTGAGGGAGGAACTTTGATTCGAT
1 AAAGAATGAGG-ATTAGTATGACTATTCACGTTTGCCTCTTTTGAGGGAGGAACTTTGATTCGAT
65 CT-AAACGGTGTAAAGAAAAGCTTTTCTTGCGGGACACCAAAATCATCAATGTCATGTATCCTAA
65 CTAAAACGGTGTAAAGAAAAGCTTTTCTTGC--GACACC-AAATCATCAATGTCATGTATCCTAA
*
129 T-CTGGGAATGTGTTTTTGGTTTTCGATTTTGGGAAAGAAAGGAGACTGTTATGAGAGTCGATGC
127 TGATGGGAATGTGTTTTTGG-TTTCGATTTTGGGAAAGAAAGGAGACTGTTATGAGAGTCGATGC
193 TACGTCTTATTTACGGGATGAACATTGATTTTAAGG-AAA-AGGGTAAGGAAAAGATTTCGATGC
191 TA-GTCTTATTTACGGGATGAACATTGATTTTAAGGAAAATAGGGTAAGGAAAAGATTTCGATGC
* * * *
256 AAACGAAAAATCTC-ATATCGTTTAT-CGAACTAAGGAGAATGTTTTTATAGTGTCAAATCAGAA
255 AAAAGAAAATTATCAATATCGTTTATCCGAA-TGAGGAGAATGTTTTTATAGTGTCAAATCAGAA
*
319 GTGAATGATGATCATTGCTAGAATCTATATTTGACTCATTTGAGGCACAAAGTTAGAC-TTGCAA
319 ATGAATGATGATCATTGCTAGAATCTATATTTGACTCATTTGAGGCACAAAGTTAGACTTTGCAA
383 AAATTGG-GAG-AGAAAAGCCTTTC-TGAGAAGCCAAAGCATCAATATCGTCTATCCTAATGACA
384 AAATTGGAGAGAAG-AAAGCCTTTCTTGAGAAGCCAAAGCATCAATATCGTCTATCCTAATGACA
* *
445 CAACTTTGTTTATGGTGCCCAATCTTG-AAATAATGCGATTAGTATGACTATTCATG-TTGTCTC
448 CAACTTTGTTTATGGTGCCAAATCCTGAAAATAATGCGATTAGTATGACTATTCATGTTTGTCTC
508 CTTTGA-GGATGAACTTTGATTCTATCAAAAATGATGG-AAGAAAAGTTTTTTCTTGCGACACCA
513 CTTTGAGGGATGAACTTTGATTCTATCAAAAATGATGGAAAGAAAAG-TTTTTCTTGCGACACCA
571 TATCATCAATGTCATGCATCCT-ACTGAACGCAATGTCTTTTTTTCCCAATCTTTAAAAGAATGG
577 TATCATCAATGTCATGCATCCTAAC-GAACGCAATGTCTTTTTTTCCCAATCTTTAAAAGAATGG
635 AGAC-TTACAAGAATCATTGCTAGT-TTATTTTTGGGATGAACTTTGATTTTAACGAAAATAAGG
641 AGACTTTACAAGAATCATTGCTAGTCTTATTTTTGGGATGAACTTTGATTTTAACGAAAATAAGG
*
698 CAAGG-AAAGATTTTCATGCAAAAGAAAATGATCGGTCTCATTTATCCTAATGAGGAGAATGTTT
706 CAAGGAAAAGATTTTCATGCAAAAGAAAATGATCGGTATCATTTATCCTAATGAGGAGAATGTTT
*
762 TTAT-GTGTCT-ATCACAAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAG
771 TTATAGTGTCTAATCAC-AAAATGAATGAAGATCATTACTAGAATCTATGTTTGTCTCATTTGAG
*
825 GCACGAAGTTAGGCTTTATAAC-ACTGGTGGGAAGAAAGCCTTTTTGAGAAGCCAAAGCATCATT
835 GCACGAAGTTAGGCTTTATAACAATTGGT-GGAAGAAAGCCTTTTTGAGAAGCCAAAGCATCATT
* *
889 ATCATCTATAAT---GGGAAGGACTTTGTTTATGGCGCATAATCCT-A
899 AT-ATCTATAATAACGGGAA-GACTTTGTTTATGGCACCTAATCCTAA
933 AAAGAATGAGGATTAGTAGTGACTATTCACGTTTGCCTCTTTTGAGGGAGGAACTTTGATTC-AT
1 AAAGAATGAGGATTAGTA-TGACTATTCACGTTTGCCTCTTTTGAGGGAGGAACTTTGATTCGAT
*
997 CTAAAAC-GTGTAAAGAAAAGCTTTTCTTGCGACACCCAATCATCAATGTCATGTATCCT-ATGA
65 CTAAAACGGTGTAAAGAAAAGCTTTTCTTGCGACACCAAATCATCAATGTCATGTATCCTAATGA
1060 TGGGAATGTGTTTTTGGTTTCGATTTTGGGAAAGAAAGGAGACTGTTATGAGAGTCGATGCTAGT
130 TGGGAATGTGTTTTTGGTTTCGATTTTGGGAAAGAAAGGAGACTGTTATGAGAGTCGATGCTAGT
*
1125 CTTATTTACGGGAT-AACATTGATTTTACGG-AAATAGGGTAAGGAAAAGATTTTCGATGCAAAA
195 CTTATTTACGGGATGAACATTGATTTTAAGGAAAATAGGGTAAGGAAAAGA-TTTCGATGCAAAA
*
1188 -AAAATTATCAATATCGTTTATCCAAATGAGGAGAATG-TTTTATAGTGTCAAATCAGAAAATGA
259 GAAAATTATCAATATCGTTTATCCGAATGAGGAGAATGTTTTTATAGTGTCAAATCAG-AAATGA
*
1251 CTGATGATCATTGCTAGAATCTATA-TTGA-TCATTTGAGGCAC-AAGTTAGGGACTTTGC-AAA
323 ATGATGATCATTGCTAGAATCTATATTTGACTCATTTGAGGCACAAAGTTA--GACTTTGCAAAA
*
1312 ATTGGAGAGAAGGAAAGCCTTTCTTGAGAAGCCAAAGCATCAATATCATCTATCCTAATGACACA
386 ATTGGAGAGAA-GAAAGCCTTTCTTGAGAAGCCAAAGCATCAATATCGTCTATCCTAATGACACA
1377 ACTTTGTTTATGGTGCCAAATCCTGAAAATAATGCGATTAGTATGACTATTCATGTTTGTCTCC-
450 ACTTTGTTTATGGTGCCAAATCCTGAAAATAATGCGATTAGTATGACTATTCATGTTTGTCTCCT
1441 TTGAGGGATGAACTTTGATTCTATCCAAAAATGAT-GAAAGAAAAGTTTTTCTTGCGACACCATA
515 TTGAGGGATGAACTTTGATTCTAT-CAAAAATGATGGAAAGAAAAGTTTTTCTTGCGACACCATA
*
1505 TCATCAATGTCATGCATACCTAACGAACGCAATGTC-TTTTTTCCCACTCTTTAAAAGAATGGGA
579 TCATCAATGTCATGCAT-CCTAACGAACGCAATGTCTTTTTTTCCCAATCTTTAAAAGAAT-GGA
*
1569 GACTTAACAAGAATCATTGCTAGTCTTATTTTTGGGATGAACTTTGATTTTAACGAAAATAAGGC
642 GACTTTACAAGAATCATTGCTAGTCTTATTTTTGGGATGAACTTTGATTTTAACGAAAATAAGG-
*
1634 CAAGGAAAAAGATTTTCATGC-AAAGAAAATGCTCGGTATCATTTATCCTAATGAGGAGAATG-T
706 CAAGG-AAAAGATTTTCATGCAAAAGAAAATGATCGGTATCATTTATCCTAATGAGGAGAATGTT
*
1697 TTTATAGTGTCTAATCACAAAATGAATGAAGATCATTACTA-AATCCATGTTTGTCTCATTTGAG
770 TTTATAGTGTCTAATCACAAAATGAATGAAGATCATTACTAGAATCTATGTTTGTCTCATTTGAG
1761 GCACGAAGTTAGGCTTTATAACAATTGGTGGAA-AGAAGCC-TTTTGAG-AGCCAAAGCATCA-T
835 GCACGAAGTTAGGCTTTATAACAATTGGTGGAAGA-AAGCCTTTTTGAGAAGCCAAAGCATCATT
*
1822 ATCATATAT-ATAACGGGAAGAACTTTGTTTCATGGCA-CT-ATCCTAA
899 AT-ATCTATAATAACGGGAAG-ACTTTGTTT-ATGGCACCTAATCCTAA
1868 AAAGAATGAGGATTAGTA-GACTATTCAACGTTTGCCTCTTTTGAGGGAGGAACTTTGATTCGAT
1 AAAGAATGAGGATTAGTATGACTATTC-ACGTTTGCCTCTTTTGAGGGAGGAACTTTGATTCGAT
*
1932 CTAACACGGTGTAAAG-AAA-CTTTTCTTGCGACA-CAAATCATCAATGTCATGTATCCTAATGA
65 CTAAAACGGTGTAAAGAAAAGCTTTTCTTGCGACACCAAATCATCAATGTCATGTATCCTAATGA
1994 TGGGAA--TGTTTTTGGTTTCGATTTT-GGAAAGAAAGGAGACTGTTATGAGAGTCGATGCTAGT
130 TGGGAATGTGTTTTTGGTTTCGATTTTGGGAAAGAAAGGAGACTGTTATGAGAGTCGATGCTAGT
2056 CTTATTTACGGGATGAACATTGATTTTAAGGAAAATAGGGTAAGG-AAAGATTTCGATGCAAAAG
195 CTTATTTACGGGATGAACATTGATTTTAAGGAAAATAGGGTAAGGAAAAGATTTCGATGCAAAAG
2120 AAAATTATCAATATCGTTTATCCGAAT-AGGAGAATG-TTTTATTAGTGTCAAA-CAGAAAGTTG
260 AAAATTATCAATATCGTTTATCCGAATGAGGAGAATGTTTTTA-TAGTGTCAAATCAGAAA--TG
*
2182 AATGATGATCATTGCT--AATCTATA-TTGACT-ATTTGAGGCACAAAGTTTAGA-TCTTGCGAA
322 AATGATGATCATTGCTAGAATCTATATTTGACTCATTTGAGGCACAAAG-TTAGACT-TTGCAAA
* *
2242 AATTGGAGAGAAGAAAGCCTTTC-TGAGAAGCCAAAGCATCAATCTCATCTATCCTAATGACACA
385 AATTGGAGAGAAGAAAGCCTTTCTTGAGAAGCCAAAGCATCAATATCGTCTATCCTAATGACACA
2306 ACTTTGTTTATGCGTGCCAAATCCTGAAAAT-ATGCGATTAGTA-GACTATTTCATGTTTGTCTC
450 ACTTTGTTTATG-GTGCCAAATCCTGAAAATAATGCGATTAGTATGACTA-TTCATGTTTGTCTC
2369 CTTTGA-GGATGAACTTTGATTCTATC-AAAATGATGGAAAGAAAAGTTTTTCTTGCGACACCAT
513 CTTTGAGGGATGAACTTTGATTCTATCAAAAATGATGGAAAGAAAAGTTTTTCTTGCGACACCAT
*
2432 ATCATCAATGT-ATACATCCTAACGAACGCAATGTCTTTTTTTCCCAATC-TTAAAAGAATGGAG
578 ATCATCAATGTCATGCATCCTAACGAACGCAATGTCTTTTTTTCCCAATCTTTAAAAGAATGGA-
*
2495 GACTTTACAAGAATCCTTGCTAGTCTTATTTTTGGGATGAAACTTTGATTTTAACGAAAATAAGG
642 GACTTTACAAGAATCATTGCTAGTCTTATTTTTGGGATG-AACTTTGATTTTAACGAAAATAAGG
* * *
2560 CAAGGAAAAGATTTACATGCAAAAGAATAACTGATCGGTATCATTTATCCTAATGAGGATATTG-
706 CAAGGAAAAGATTTTCATGCAAAAGAA-AA-TGATCGGTATCATTTATCCTAATGAGGAGAATGT
*
2624 CTTTACTAGTGTCTAATCACAAAATGAATGAAGATCATTACTAG-ATCTATGTTTGTCTCATTTG
769 TTTTA-TAGTGTCTAATCACAAAATGAATGAAGATCATTACTAGAATCTATGTTTGTCTCATTTG
2688 AGGCACGAAGTTAGGCTTTAT-ACAATTGGTGGGAAGAAAGCCTTTTTGAGAAGCC-AAGCATCA
833 AGGCACGAAGTTAGGCTTTATAACAATTGGT-GGAAGAAAGCCTTTTTGAGAAGCCAAAGCATCA
* *
2751 TTATCATCTATAATAA-TGGAAGACTTTGTTTATGGC-CATAATCCTAAA
897 TTAT-ATCTATAATAACGGGAAGACTTTGTTTATGGCACCTAATCCT-AA
* *
2799 AAAGAATGA--TTTCGTATGACTATTCACGTTTGCCTCTTTTGAGGGAGGCAACTTTGATTCGAT
1 AAAGAATGAGGATTAGTATGACTATTCACGTTTGCCTCTTTTGAGGGAGG-AACTTTGATTCGAT
2862 CT-AAACGGTGTAAAGAAAAGCTTTTCTTGCGACACCAAATCA-CAATGTCATGTATCCTAATGA
65 CTAAAACGGTGTAAAGAAAAGCTTTTCTTGCGACACCAAATCATCAATGTCATGTATCCTAATGA
2925 TGGGAATGTGTTTTTGGTTTCGATTTTGGGAAAGAAAGGAGACTGTTATGAGAGTCGATGCTAGT
130 TGGGAATGTGTTTTTGGTTTCGATTTTGGGAAAGAAAGGAGACTGTTATGAGAGTCGATGCTAGT
2990 CTTATTTACGGGATGGAACATTGATTTTAA-GAAAATAGGGTAAGGAAAAGATTTCGATGCAAAA
195 CTTATTTACGGGAT-GAACATTGATTTTAAGGAAAATAGGGTAAGGAAAAGATTTCGATGCAAAA
*
3054 GAAAA-TATCAATATCGTTTATTCCGAATGAGGA-AATGTTTTTATAGTGTCAAATCAGAGATGA
259 GAAAATTATCAATATCGTTTA-TCCGAATGAGGAGAATGTTTTTATAGTGTCAAATCAGAAATGA
3117 ATGATGATCATTGCTAGAATCTATATTTGACTCATTTGAGGCAC-AAGTTAGAC-TTGC-AAAAT
323 ATGATGATCATTGCTAGAATCTATATTTGACTCATTTGAGGCACAAAGTTAGACTTTGCAAAAAT
* *
3179 TGGAGAGAACGAAAGCCTTTCTTGAGAAGCCAACGCATCACTAT-GTCTATCCTAATGACACAAC
388 TGGAGAGAA-GAAAGCCTTTCTTGAGAAGCCAAAGCATCAATATCGTCTATCCTAATGACACAAC
3243 TTTGTTTATGGTTG-CAAATCCTGAAAATAATGCGATTAGTATGACTATTCATGTTTGTCTCCTT
452 TTTGTTTATGG-TGCCAAATCCTGAAAATAATGCGATTAGTATGACTATTCATGTTTGTCTCCTT
3307 TGAGGGATTGAACTTTGATTCTATCAAAAATGATGGAAAG-AAAGTTTTTCTTGCGACACCATAT
516 TGAGGGA-TGAACTTTGATTCTATCAAAAATGATGGAAAGAAAAGTTTTTCTTGCGACACCATAT
*
3371 CATCAATGTCATGCAT-CTACCGAACGCAATGTCTTTTTTTCCCAATCTTTAAAAGAATGGAGAC
580 CATCAATGTCATGCATCCTAACGAACGCAATGTCTTTTTTTCCCAATCTTTAAAAGAATGGAGAC
3435 TTTACAAGCAATCATTGCTAGTCTTA-TTTTGGGATGAACTTTGATTTTAACGAAAATAAGGCAA
645 TTTACAAG-AATCATTGCTAGTCTTATTTTTGGGATGAACTTTGATTTTAACGAAAATAAGGCAA
3499 GG-AAAGATTTTCATGCAAAAGAAAATGATCGGTATCATTTATCCTAATGAGG-GAATGTTTTTA
709 GGAAAAGATTTTCATGCAAAAGAAAATGATCGGTATCATTTATCCTAATGAGGAGAATGTTTTTA
* *
3562 TCGTGTCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCAC
774 TAGTGTCTAATCACAAAATGAATGAAGATCATTACTAGAATCTATGTTTGTCTCATTTGAGGCAC
3627 GAAGTTAGGCTTT-TAAC-ATTGGTGGAAGAAAGCCTTTTTGAGAAGCCAAAGCATCATT-TATT
839 GAAGTTAGGCTTTATAACAATTGGTGGAAGAAAGCCTTTTTGAGAAGCCAAAGCATCATTATA-T
*
3689 CTATTATAAC-GGAAGGGACTTTGTTTAT-GCACCTAATCCTAA
903 CTATAATAACGGGAA--GACTTTGTTTATGGCACCTAATCCTAA
*
3731 AAAGAATGAGGATTCGTATGACTATTCACGTTTGCCTC-TTTGAGGGAGGAACTTTGATTCGATC
1 AAAGAATGAGGATTAGTATGACTATTCACGTTTGCCTCTTTTGAGGGAGGAACTTTGATTCGATC
3795 TAAAACGGTGTAAAGAAAAGC-TTTC-TGCGACACCAAATCATCAATGTCATGTATCCTAATGAT
66 TAAAACGGTGTAAAGAAAAGCTTTTCTTGCGACACCAAATCATCAATGTCATGTATCCTAATGAT
3858 GGGAATGTGTTTTTGGTTTCGATTTTGGGAAAGAAAGGAGAC-GTTATGAGA-TC-ATGCTAGTC
131 GGGAATGTGTTTTTGGTTTCGATTTTGGGAAAGAAAGGAGACTGTTATGAGAGTCGATGCTAGTC
3920 TTATTTACGGGATG-ACATTGATTTTAAGGAAAATAGGGTAAGG--AA-ATTTCGATGC---AGA
196 TTATTTACGGGATGAACATTGATTTTAAGGAAAATAGGGTAAGGAAAAGATTTCGATGCAAAAGA
*
3978 AAA-T-TC-ATCATCGTTTATCCGAATAAGGAG-ATGTTTTTATAGTGTCAAATCAGAAATG-AT
261 AAATTATCAAT-ATCGTTTATCCGAATGAGGAGAATGTTTTTATAGTGTCAAATCAGAAATGAAT
4038 GATGATCATTGCTAGAATCTATATTTGACTCATTTGAGGCACAAAGTTAGACTTTGCAAAAATTG
325 GATGATCATTGCTAGAATCTATATTTGACTCATTTGAGGCACAAAGTTAGACTTTGCAAAAATTG
*
4103 GAGAGAAGAAAGCCTTTCTTGAGAAGCCAAAGCATCAATATCATCTA-CCTAATGACACAACTTT
390 GAGAGAAGAAAGCCTTTCTTGAGAAGCCAAAGCATCAATATCGTCTATCCTAATGACACAACTTT
*
4167 GTTTATGGTGCCAAATCCTGAAAATAATGCGA-TA-TATGACTATTCTTGTTTGTCTCCTTTGAG
455 GTTTATGGTGCCAAATCCTGAAAATAATGCGATTAGTATGACTATTCATGTTTGTCTCCTTTGAG
4230 GGATGAAC-TTGATTCTATCAAAAAT--TGGAAAGAAAAGTTTTTCTTGCGACACCATATCATCA
520 GGATGAACTTTGATTCTATCAAAAATGATGGAAAGAAAAGTTTTTCTTGCGACACCATATCATCA
*
4292 ATGTCATACATCCTAACGAACGCAATGTCTTTTTTTCCCAATCTTTAAAAGAATGGAGACTTTAC
585 ATGTCATGCATCCTAACGAACGCAATGTCTTTTTTTCCCAATCTTTAAAAGAATGGAGACTTTAC
*
4357 AAGAATCCTTGCTAGTCTTATTTTTGGGATGAACTTTGATTTTAACGAAAATAAGGCAAGGAAAA
650 AAGAATCATTGCTAGTCTTATTTTTGGGATGAACTTTGATTTTAACGAAAATAAGGCAAGGAAAA
* *
4422 GATTTACATGC-AAAGAAAATGATCGGTATCATTTATCCTAATGAGGAGATTG-TTTTATAGTGT
715 GATTTTCATGCAAAAGAAAATGATCGGTATCATTTATCCTAATGAGGAGAATGTTTTTATAGTGT
4485 CTAATCACAAAATGAATGAAGATCATTACTAGAATCTATGTTTGTCTCATTTGAGGCACGAAGTT
780 CTAATCACAAAATGAATGAAGATCATTACTAGAATCTATGTTTGTCTCATTTGAGGCACGAAGTT
* * *
4550 AGGCTTTATAGCAATT--TGGAAGAAAGCCTTTTTGAGAAG-C-AATCATCATT-CATCTATAAT
845 AGGCTTTATAACAATTGGTGGAAGAAAGCCTTTTTGAGAAGCCAAAGCATCATTATATCTATAAT
4610 AACGGGAAGACTTTGTTTATGGCACCTAATTCCTAA
910 AACGGGAAGACTTTGTTTATGGCACCTAA-TCCTAA
*
4646 AAAGAATGAGGATTAGTATGACTATTCACATTTGCCTC-TTTGA-GGAGG-ACTTTGATTCGATC
1 AAAGAATGAGGATTAGTATGACTATTCACGTTTGCCTCTTTTGAGGGAGGAACTTTGATTCGATC
4708 TAAAAC-GTGTTAAAGAAAAGCTTTTCTTGCGACACCAAATCATCAATGTCATGTATCCTAATGA
66 TAAAACGGTG-TAAAGAAAAGCTTTTCTTGCGACACCAAATCATCAATGTCATGTATCCTAATGA
* * *
4772 TGGGAA-GTGTTTTTGGTTTCGATTTT-GGAAAGAAAGGAGACTTTTATGAGA-TCGATCCT-GG
130 TGGGAATGTGTTTTTGGTTTCGATTTTGGGAAAGAAAGGAGACTGTTATGAGAGTCGATGCTAGT
4833 CTTA-TTACGGGATGAACA-TGATTTTAAGG-AAATAGGGTAAGGAAAAGA-TTCGATGCAAAAG
195 CTTATTTACGGGATGAACATTGATTTTAAGGAAAATAGGGTAAGGAAAAGATTTCGATGCAAAAG
* * *
4894 AAAATTATCAATA--GTTTATCCGAATGAGGCGAATGTTTTTATCGTGTCAAATCA-ACGATGAA
260 AAAATTATCAATATCGTTTATCCGAATGAGGAGAATGTTTTTATAGTGTCAAATCAGA-AATGAA
*
4956 TGATGATCATTGCTAGAAATTCTAT-TTTGACTTA-TTGAGGCACAAAGTTAGACTTTGCAAAAA
324 TGATGATCATTGCTAG-AA-TCTATATTTGACTCATTTGAGGCACAAAGTTAGACTTTGCAAAAA
*
5019 TTGGAGAGAAGAAAGCCTTTCTTGAGAAGCCAAAGCATC-ATATTGTC-ATCCTAATGACACAAC
387 TTGGAGAGAAGAAAGCCTTTCTTGAGAAGCCAAAGCATCAATATCGTCTATCCTAATGACACAAC
5082 -TTGTTTATGGTGCC-AAT-CTGAAAA-AATG-GATTAGTATGACTATTCATGTTTGTCCTCCTT
452 TTTGTTTATGGTGCCAAATCCTGAAAATAATGCGATTAGTATGACTATTCATGTTTGT-CTCCTT
5142 TGAGGGATGAACTTTGATTCTATCAAAAATGATGGAAAGAAAAGTTTTTTCTTGCGACCACCATA
516 TGAGGGATGAACTTTGATTCTATCAAAAATGATGGAAAGAAAAG-TTTTTCTTGCGA-CACCATA
5207 TCATCAATGTCATGCATCCT-ACGAA-GCAATGTC-TTTTTTCCCAATCTTTAAAAGAATGGAGA
579 TCATCAATGTCATGCATCCTAACGAACGCAATGTCTTTTTTTCCCAATCTTTAAAAGAATGGAGA
*
5269 CTTTAAAAGAATCATTGCTAG--TTA-TTTTGGGAT-AACTTTGATTTTAACGAAAATAAGGCAA
644 CTTTACAAGAATCATTGCTAGTCTTATTTTTGGGATGAACTTTGATTTTAACGAAAATAAGGCAA
5330 GGAAAAGATTTCTCATGC--AAG-AAAT-AT-GGTATCATTTATCCTAATGA-GAG-ATGTTTTT
709 GGAAAAGATTT-TCATGCAAAAGAAAATGATCGGTATCATTTATCCTAATGAGGAGAATGTTTTT
**
5388 -TAAGTGT-TAATCACAAAATGAATGAAGATCAATTACTAGAATCCCTGTTTGTCTCATTTGAGG
773 AT-AGTGTCTAATCACAAAATGAATGAAGATC-ATTACTAGAATCTATGTTTGTCTCATTTGAGG
* *
5451 CAC-AAGTTAGGCTTTATAAC-ACTGGTGGGAAAGAAAGCCTTTTTGAGAAGCCAAAGCCTCAAG
836 CACGAAGTTAGGCTTTATAACAATTGGT-GG-AAGAAAGCCTTTTTGAGAAGCCAAAGCATC-A-
* ** *
5514 TTATCATCTATAATAATGGGAAGGACTTTGTTTATGGTGCATAATCCTAA
897 TTAT-ATCTATAATAACGGGAA-GACTTTGTTTATGGCACCTAATCCTAA
* *
5564 AAAGAATGGAGTATTAGTATGACTATTCACAGTTTG-CT-TTTT-AAGGAGGAACTTTGATTCGA
1 AAAGAAT-GAGGATTAGTATGACTATTCAC-GTTTGCCTCTTTTGAGGGAGGAACTTTGATTCGA
*
5626 TCT-AAACGGTGT-AAGAAAAGCTTTTCTTGCGACACCAAATCATCAACGTCATTGTAATCCTAA
64 TCTAAAACGGTGTAAAGAAAAGCTTTTCTTGCGACACCAAATCATCAATGTCA-TGT-ATCCTAA
5689 TGATGGGAATGTGTTTTTGGTTTCGATTTTGGGAAAGAAAGGAGACTGTTATGAGAGTCGATGCT
127 TGATGGGAATGTGTTTTTGGTTTCGATTTTGGGAAAGAAAGGAGACTGTTATGAGAGTCGATGCT
5754 AGTCTTATTTACGGGATGAACATTGATTTTAAGGAAAATAGGGTAAGGAAAAGATTTCGATGC-A
192 AGTCTTATTTACGGGATGAACATTGATTTTAAGGAAAATAGGGTAAGGAAAAGATTTCGATGCAA
5818 AAGAAAATTATCAATATCGTTTATGTCC-AATGA-GAGAATGTTTTTATAGTGTC-AATCAGAAA
257 AAGAAAATTATCAATATCGTTTA--TCCGAATGAGGAGAATGTTTTTATAGTGTCAAATCAGAAA
5880 CTGAATGATGATCATTGCTAGAATTCTAT-TTTGACTCATTTGA-GCACAAAAGTTAGACTTTGC
320 -TGAATGATGATCATTGCTAGAA-TCTATATTTGACTCATTTGAGGCAC-AAAGTTAGACTTTGC
5943 -AAAATTGGAGAGAAGAAAGCCTTTCTTGAGAAGCCAAAGCATCAATATCGTCTATCCTAATGAC
382 AAAAATTGGAGAGAAGAAAGCCTTTCTTGAGAAGCCAAAGCATCAATATCGTCTATCCTAATGAC
*
6007 ACAACTTTGTTTAT-GTGCCAAATCTTGAAAATAATGCGATTAGTATGACTATTTCATGTTTGTC
447 ACAACTTTGTTTATGGTGCCAAATCCTGAAAATAATGCGATTAGTATGACTA-TTCATGTTTGTC
6071 TCC-TTGAGGGATGAACTTTGATTCTATCAAAAATGATGGAAAGAAAAGTTTTTCTTGCGACACC
511 TCCTTTGAGGGATGAACTTTGATTCTATCAAAAATGATGGAAAGAAAAGTTTTTCTTGCGACACC
6135 A-ATCA-CAATGTCATGCATCCTAACTGAACGCAATGTCTTTTTTTTCCCAATCTTTAAAAGAAT
576 ATATCATCAATGTCATGCATCCTAAC-GAACGCAATGTC-TTTTTTTCCCAATCTTTAAAAGAAT
*
6198 GGAGACTTAAC-AGAA-CA-TGCTAGTCTTATTTTTGGGATGAACTTTGATTTTAACGAAAATAA
639 GGAGACTTTACAAGAATCATTGCTAGTCTTATTTTTGGGATGAACTTTGATTTTAACGAAAATAA
*
6260 GGCAAGG-AAAGATGTTCATGC-AAAGAAAATGATCGGTATCATTTATCCTAATGA-GAG-ATG-
704 GGCAAGGAAAAGATTTTCATGCAAAAGAAAATGATCGGTATCATTTATCCTAATGAGGAGAATGT
* *
6320 TTTTATAGTGGTCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATG-TTGTCGCA-TTG
769 TTTTATAGT-GTCTAATCACAAAATGAATGAAGATCATTACTAGAATCTATGTTTGTCTCATTTG
* *
6383 AGGCACGAAGTTAGGCTTTATACCAA-TGGGGAGAAGAAAGCCTTTTTGAGAAGCCAAAGCATCA
833 AGGCACGAAGTTAGGCTTTATAACAATTGGTG-GAAGAAAGCCTTTTTGAGAAGCCAAAGCATCA
6447 TTATCATCTATAAT---GGGAAGAC-TTGTTTATGGGCACCTAATCCTAA
897 TTAT-ATCTATAATAACGGGAAGACTTTGTTTAT-GGCACCTAATCCTAA
*
6493 AAAGAATGAGGATTAGTATGACTATGCACGTTTGCCTCTTTTG-GGGAGGAACTTTGATTCGATC
1 AAAGAATGAGGATTAGTATGACTATTCACGTTTGCCTCTTTTGAGGGAGGAACTTTGATTCGATC
*
6557 TAAAACGGTGTAAAGAAAAGCTTTTCTTGCTTGCGACACCAAATCATCAATTTCATGTATCCTAA
66 TAAAACGGTGTAAAGAAAAGC--TT-TT-CTTGCGACACCAAATCATCAATGTCATGTATCCTAA
6622 TGATGGGAATGTGTTGTTTGGTTTCGA-TTTGGGAAAGAAAGGAGACTGTTATGAGAGTCGATTG
127 TGATGGGAATGTGTT-TTTGGTTTCGATTTTGGGAAAGAAAGGAGACTGTTATGAGAGTCGA-TG
*
6686 CTAGTCTTATTTA-GGGATGAACATTGGTTTTAAGGAAAAATAGGGTAAGGAAAA-ATTTTCGAT
190 CTAGTCTTATTTACGGGATGAACATTGATTTTAAGG-AAAATAGGGTAAGGAAAAGA-TTTCGAT
6749 GCAAAAGAAAAAATTATCAATATGCGTTTATCCGAAT-A-G-GAATGTTTTTA-AGTGTCAAATC
253 GCAAAAG--AAAATTATCAATAT-CGTTTATCCGAATGAGGAGAATGTTTTTATAGTGTCAAATC
* *
6810 AGAAAAATGAATGATGATCATTAGCTCGAATCTCTATATTTGACTAATTTGAGGCACAAAGTTAG
315 AG--AAATGAATGATGATCATT-GCTAGAA--TCTATATTTGACTCATTTGAGGCACAAAGTTAG
*
6875 ACTTTGCAAAAATTGGAGAGAAG-AAGCGC-TTCTTGAGAAGCCAAAGCATCAATATCATCTATC
375 ACTTTGCAAAAATTGGAGAGAAGAAAGC-CTTTCTTGAGAAGCCAAAGCATCAATATCGTCTATC
*
6938 CTAATGACACAACTTTGTTTATGGTGCCAAATCCTG-AAATAATGCGATTAGTATGACTATTCTT
439 CTAATGACACAACTTTGTTTATGGTGCCAAATCCTGAAAATAATGCGATTAGTATGACTATTCAT
7002 GTTTGTCTCCTTTGAGGGATGAACTTTGATTCTATCAAAAATGATGGAAAG-AAAGTTTTTCTTG
504 GTTTGTCTCCTTTGAGGGATGAACTTTGATTCTATCAAAAATGATGGAAAGAAAAGTTTTTCTTG
7066 CGACACCCATATCATCAATGTCAT-CATCCTAACGAACGCAATGTCTTTTTTTCCCAATCTTTAA
569 CGACA-CCATATCATCAATGTCATGCATCCTAACGAACGCAATGTCTTTTTTTCCCAATCTTTAA
*
7130 AAGAATGGAGACTTTACAAGAATCCTTGCTAGTCTTATTTTTGGGATGAACTTTGATTTTAACGA
633 AAGAATGGAGACTTTACAAGAATCATTGCTAGTCTTATTTTTGGGATGAACTTTGATTTTAACGA
7195 AAATAAGGCAAGGAAAAGATTTTACATGCAAAAGAAAATGATC-GTATCATTTATCCTAA-GAGG
698 AAATAAGGCAAGGAAAAGATTTT-CATGCAAAAGAAAATGATCGGTATCATTTATCCTAATGA-G
*
7258 GAGATTGTTTTTATAGTGTCTAATCACAAAATGAATG-AGATCATTACTAGAATCTATGTTTGTC
761 GAGAATGTTTTTATAGTGTCTAATCACAAAATGAATGAAGATCATTACTAGAATCTATGTTTGTC
* *
7322 TCATTTGA-GCACGAAGTTAGGCTTTATAGCAATTGGT-GAAAAAAGCCTTTTTGAG-AGCCAAA
826 TCATTTGAGGCACGAAGTTAGGCTTTATAACAATTGGTGGAAGAAAGCCTTTTTGAGAAGCCAAA
7384 GCATCATTATCATCTATAATAACGGGAAGACTTTGTTTATGGCACCTAATCCTAA
891 GCATCATTAT-ATCTATAATAACGGGAAGACTTTGTTTATGGCACCTAATCCTAA
7439 AAAGAATGAGGATTAGTATGACTATTCAC-TTTGCCTCTTTTGAGGGAGGAACTTTGATTCGATC
1 AAAGAATGAGGATTAGTATGACTATTCACGTTTGCCTCTTTTGAGGGAGGAACTTTGATTCGATC
7503 TAAAACGGTGTAAAG-AAAGCTTTTCTTGCGACACC-AATCATCAATGTCATGTATCCTAATGAT
66 TAAAACGGTGTAAAGAAAAGCTTTTCTTGCGACACCAAATCATCAATGTCATGTATCCTAATGAT
7566 GGGAATGTGTTGTTTGGTTTCGA-TTTGGGAAAGAAAGGAGACTGTTATGAGAGTCGAT-CTAGT
131 GGGAATGTGTT-TTTGGTTTCGATTTTGGGAAAGAAAGGAGACTGTTATGAGAGTCGATGCTAGT
7629 CTTATTTACGGG-TGAACATTGATTTTAAGGAAAATAGGGTAAGGAAAAGATTTCGATGCAAAAG
195 CTTATTTACGGGATGAACATTGATTTTAAGGAAAATAGGGTAAGGAAAAGATTTCGATGCAAAAG
7693 -AAATTATCAATATCGTTTATCCGAATGAGGAGAATGTTTTTATAGTGTC-AATCAGAAATGAAT
260 AAAATTATCAATATCGTTTATCCGAATGAGGAGAATGTTTTTATAGTGTCAAATCAGAAATGAAT
7756 GATGATCATTGCTAG-ATCTATATTTGACTCA-TTGAGGCACAAAGTTAGACTTTGCAAAAATTG
325 GATGATCATTGCTAGAATCTATATTTGACTCATTTGAGGCACAAAGTTAGACTTTGCAAAAATTG
* *
7819 GAGAGAAGAAAACCTTTCTTGAGAAGCCAAAGCATCAATATTGTCTATCCTAATGACACAACTTT
390 GAGAGAAGAAAGCCTTTCTTGAGAAGCCAAAGCATCAATATCGTCTATCCTAATGACACAACTTT
7884 GTTTATGGTGCCAAATCCTGAAAATAATGCGATTAGTATGACTATTCATGTTTGTCTCCTTTGAG
455 GTTTATGGTGCCAAATCCTGAAAATAATGCGATTAGTATGACTATTCATGTTTGTCTCCTTTGAG
7949 GGATGAACTTTGATTCTATCAAAAATGATGGAAAGAAAAGTTTTTCTTGCGACACCATATCATCA
520 GGATGAACTTTGATTCTATCAAAAATGATGGAAAGAAAAGTTTTTCTTGCGACACCATATCATCA
8014 ATGTCATGCATCCTAACGAAACGCAATGTCTTTTTTTCCCAATCTTTAAAAGAATGGAGACTTTA
585 ATGTCATGCATCCTAACG-AACGCAATGTCTTTTTTTCCCAATCTTTAAAAGAATGGAGACTTTA
8079 CAAGAATCATTGCTAGTCTTA-TTTT-GGATGAACTTTGATTTTAACGAAAATAAGGCAAGGAAA
649 CAAGAATCATTGCTAGTCTTATTTTTGGGATGAACTTTGATTTTAACGAAAATAAGGCAAGGAAA
* *
8142 AGATTTACATGCAAAAG-AAATGATCGGTATCATTTATCCTAATGAGGAGAGTTGTTTTTATAGT
714 AGATTTTCATGCAAAAGAAAATGATCGGTATCATTTATCCTAATGAGGAGA-ATGTTTTTATAGT
8206 GTCTAATCACAAAATGAATGAAGATCATTACTAGAATCTATG-TTGTCTCATTTGAGGCACGAAG
778 GTCTAATCACAAAATGAATGAAGATCATTACTAGAATCTATGTTTGTCTCATTTGAGGCACGAAG
*
8270 TTAGGCTTTATAACAATTGGTGG-A-AAAGCCTTTTGGAGAAGCCAAAGCATCATTAATCATCTA
843 TTAGGCTTTATAACAATTGGTGGAAGAAAGCCTTTTTGAGAAGCCAAAGCATCATT-AT-ATCTA
*
8333 TATTAA-GGGAAGACTTTGTTTATGGCACCTAATCCTAA
906 TAATAACGGGAAGACTTTGTTTATGGCACCTAATCCTAA
8371 AAAGAATGAGGATTAGTA-GACTATTCACGTTTGCCTCTTTTGA-GGAGGAAC-TTGATTCGATC
1 AAAGAATGAGGATTAGTATGACTATTCACGTTTGCCTCTTTTGAGGGAGGAACTTTGATTCGATC
8433 TAAAACGGTGT--A-AAAAGCTTTTCTTGCGACACCAAATCATCAATGTCATGTATCCTAATGAT
66 TAAAACGGTGTAAAGAAAAGCTTTTCTTGCGACACCAAATCATCAATGTCATGTATCCTAATGAT
8495 GGGAATGTGTTTTTGGTTTCGATTTTGGGAAAGAAAGGAGACTGTTATGAGAGTCGATGCTAGTC
131 GGGAATGTGTTTTTGGTTTCGATTTTGGGAAAGAAAGGAGACTGTTATGAGAGTCGATGCTAGTC
8560 TT-TTTACGGGATGAACATTGATTTTAAGGAAAATAGGGTAAGG-AAA-ATTTCGATGC-AAAGA
196 TTATTTACGGGATGAACATTGATTTTAAGGAAAATAGGGTAAGGAAAAGATTTCGATGCAAAAGA
*
8621 AAATTATCAATATCGTTTATCCGAAT-AGGAGAATG-TTTTATAGTGTCAAATCAAAAATGAATG
261 AAATTATCAATATCGTTTATCCGAATGAGGAGAATGTTTTTATAGTGTCAAATCAGAAATGAATG
8684 ATGATCATTGCTAGAATC--TATTTGACTCATTTGAGGCACAAAGTTAGACTTTGCAAAAATTGG
326 ATGATCATTGCTAGAATCTATATTTGACTCATTTGAGGCACAAAGTTAGACTTTGCAAAAATTGG
*
8747 AGAGAAGAAAGCCTTTCTTGAGAA-CCAAAGCATCAATATCATCTATCCTAATGACACAAC-TTG
391 AGAGAAGAAAGCCTTTCTTGAGAAGCCAAAGCATCAATATCGTCTATCCTAATGACACAACTTTG
8810 TTTATGGTGCCAAATCCTGAAAATAATGCGATTAGTATGACTATTCATGTTTGTCTCC-TTGAGG
456 TTTATGGTGCCAAATCCTGAAAATAATGCGATTAGTATGACTATTCATGTTTGTCTCCTTTGAGG
8874 GATGAACTTTGATTCTATCAAAAATGATGGAAAGAAAAGTTTTTCTTGCGACACCATATCATCAA
521 GATGAACTTTGATTCTATCAAAAATGATGGAAAGAAAAGTTTTTCTTGCGACACCATATCATCAA
*
8939 TGTCATACATCCTACAACGAACGCAATGTCTTTTTTTTCCCAATCTTT-AAAGAATGGAGACTTT
586 TGTCATGCATCCT--AACGAACGCAATGTC-TTTTTTTCCCAATCTTTAAAAGAATGGAGACTTT
*
9003 ACAAGAATCCTTGCTAGTCTTATTTTTTGGGATGAACTTTGATTTTAACGAAAATAAGGCAAGGA
648 ACAAGAATCATTGCTAGTCTTA-TTTTTGGGATGAACTTTGATTTTAACGAAAATAAGGCAAGGA
* *
9068 AAAGATTTACATGCAAAA-AAAATGATCGGTATCATTTATCCTAATGAGGAGATTGTTTTTATAG
712 AAAGATTTTCATGCAAAAGAAAATGATCGGTATCATTTATCCTAATGAGGAGAATGTTTTTATAG
9132 TGTCTAATCACAAAATGAATGAAGATCA-TACTAGAATCTATG-TTGTCTCATTTGAGGCAC-AA
777 TGTCTAATCACAAAATGAATGAAGATCATTACTAGAATCTATGTTTGTCTCATTTGAGGCACGAA
*
9194 GTTAGGCTTTATAACAATTGGT-GAAG-AAGCC-TTTTGAGAAGCCAAAGCATCATT-CATCTAT
842 GTTAGGCTTTATAACAATTGGTGGAAGAAAGCCTTTTTGAGAAGCCAAAGCATCATTATATCTAT
9255 AATAACGGGAAGACTTTGTTTATGGCACCTAATCCTAA
907 AATAACGGGAAGACTTTGTTTATGGCACCTAATCCTAA
9293 AAAGAATGAGGATTAGTATGACTATTCACGTTTGCCTCTTTTGAGGGAGGAACTTTGATTCGATC
1 AAAGAATGAGGATTAGTATGACTATTCACGTTTGCCTCTTTTGAGGGAGGAACTTTGATTCGATC
9358 TAAAACGGTGTAAAGAAAAGCTTTTCTTGCGACACCAAATCATCAATGTCATGTATCCTAATGAT
66 TAAAACGGTGTAAAGAAAAGCTTTTCTTGCGACACCAAATCATCAATGTCATGTATCCTAATGAT
9423 GGGAATGTGTTTTTGGTTTCGATTTTGGGAAAGAAAGGAGACTGTTATGAGAGTCGATGCTAGTC
131 GGGAATGTGTTTTTGGTTTCGATTTTGGGAAAGAAAGGAGACTGTTATGAGAGTCGATGCTAGTC
9488 TTATTTACGGGATGAACATTGATTTTAAGGAAAATAGGGTAAGGAAAAGATTTCGATGCAAAAGA
196 TTATTTACGGGATGAACATTGATTTTAAGGAAAATAGGGTAAGGAAAAGATTTCGATGCAAAAGA
9553 AAATTATCAATATCGTTTATCCGAATGAGGAAGAATG-TTTTATAGTGTCAAATCAGAAGATGAA
261 AAATTATCAATATCGTTTATCCGAATGAGG-AGAATGTTTTTATAGTGTCAAATCAGAA-ATGAA
*
9617 TGATGATCATTGCTAGAATCTATATTTGACTTATTTGAGGCACAAAGTTAGACTTTGCAAAAATT
324 TGATGATCATTGCTAGAATCTATATTTGACTCATTTGAGGCACAAAGTTAGACTTTGCAAAAATT
*
9682 GGAGAGAAGAAAGCCTTTCTTGAGAAGCCAAAGCATCAATATTGTCTATCCTAATGACACAACTT
389 GGAGAGAAGAAAGCCTTTCTTGAGAAGCCAAAGCATCAATATCGTCTATCCTAATGACACAACTT
9747 TGTTTATGGTGCCAAATCCTGAAAATAATGCGATTAGTATGACTATTCATGTTTGTCTCCTTTGA
454 TGTTTATGGTGCCAAATCCTGAAAATAATGCGATTAGTATGACTATTCATGTTTGTCTCCTTTGA
9812 GGGATGAACTTTGATTCTATCAAAAATGATGGAAAGAAAAGTTTTTCTTGCGACACCATATCATC
519 GGGATGAACTTTGATTCTATCAAAAATGATGGAAAGAAAAGTTTTTCTTGCGACACCATATCATC
9877 AATGTCATGCATCCTAACGAACGCAATGTCTTTTTTTCCCAATCTTTAAAAGAATGGAGACTTTA
584 AATGTCATGCATCCTAACGAACGCAATGTCTTTTTTTCCCAATCTTTAAAAGAATGGAGACTTTA
9942 CAAGAATCATTGCTAGTCTTATTTTTGGGATGAACTTTGATTTTAACGAAAATAAGGCAAGGAAA
649 CAAGAATCATTGCTAGTCTTATTTTTGGGATGAACTTTGATTTTAACGAAAATAAGGCAAGGAAA
*
10007 AGATTTTACATGCAAAAGAAAATGATCGGTATCATTTATCCTAATGAGGAGATTG-TTTTATAGT
714 AGATTTT-CATGCAAAAGAAAATGATCGGTATCATTTATCCTAATGAGGAGAATGTTTTTATAGT
10071 GTCTAATCACAAAATGAATGAAGATCATTACTAGAATCTATG-TTGTCTCATTTGAGGCACGAAG
778 GTCTAATCACAAAATGAATGAAGATCATTACTAGAATCTATGTTTGTCTCATTTGAGGCACGAAG
10135 TTAGGCTTTA-AACAATTGGTGGGAAGAAAGCCTTTTTGAGAAGCCAAAGCATCATTATCATCTA
843 TTAGGCTTTATAACAATTGGT-GGAAGAAAGCCTTTTTGAGAAGCCAAAGCATCATTAT-ATCTA
10199 TAATAACGGGAAGACTTTGTTTATGGCACCTAATCCTAA
906 TAATAACGGGAAGACTTTGTTTATGGCACCTAATCCTAA
10238 AAAGAATGAGGATTAGTATGACTATTCACGTTTGCCTCTTTTGAGGGAGGAACTTTGATTCGATC
1 AAAGAATGAGGATTAGTATGACTATTCACGTTTGCCTCTTTTGAGGGAGGAACTTTGATTCGATC
10303 TAAAACGGTGTAAAGAAAAGCTTTTCTTGCGACACCAAATCATCAATGTCATGTATCCTAATGAT
66 TAAAACGGTGTAAAGAAAAGCTTTTCTTGCGACACCAAATCATCAATGTCATGTATCCTAATGAT
10368 GGGAATGTGTTTTTGGTTTCGATTTTGGGAAAGAAAGGAGACTGTTATGAGAGTCGATGCTAGTC
131 GGGAATGTGTTTTTGGTTTCGATTTTGGGAAAGAAAGGAGACTGTTATGAGAGTCGATGCTAGTC
10433 TTATTTACGGGATGAACATTGATTTTAAGG-AAA-AGGGTAAGGAAAAGATTTCGATGCAAAAGA
196 TTATTTACGGGATGAACATTGATTTTAAGGAAAATAGGGTAAGGAAAAGATTTCGATGCAAAAGA
10496 AAATTATCAATATCGTTTATCCGAATGAGGAGAATGTTTTTATAGTGTCAAATCAGAAGATGAAT
261 AAATTATCAATATCGTTTATCCGAATGAGGAGAATGTTTTTATAGTGTCAAATCAGAA-ATGAAT
10561 GATGATCATTGCTAGAATCTATATTTGACTCATTTGAGGCACAAAGTTAGACTTTGCAAAAATTG
325 GATGATCATTGCTAGAATCTATATTTGACTCATTTGAGGCACAAAGTTAGACTTTGCAAAAATTG
10626 GAGAGAAGAAAGCCTTTCTTGAGAAGCCAAAGCATCAATATCGTCTATCCTAATGACACAAC-TT
390 GAGAGAAGAAAGCCTTTCTTGAGAAGCCAAAGCATCAATATCGTCTATCCTAATGACACAACTTT
10690 GTTTATGGTGCCAAAT-CTGAAAATAATGCGATTAGTATGACTATTCATGTTTGTCTCCTTTGAG
455 GTTTATGGTGCCAAATCCTGAAAATAATGCGATTAGTATGACTATTCATGTTTGTCTCCTTTGAG
10754 GGATGAACTTTGATTCTATCAAAAATGATGGAAAGAAAAGTTTTTCTTGCGACACCATATCATCA
520 GGATGAACTTTGATTCTATCAAAAATGATGGAAAGAAAAGTTTTTCTTGCGACACCATATCATCA
10819 ATGTCATGCATCCT-ACGAACGCAATGTC-TTTTTTCCCAATCTTTAAAAGAATGGAGAC-TTAC
585 ATGTCATGCATCCTAACGAACGCAATGTCTTTTTTTCCCAATCTTTAAAAGAATGGAGACTTTAC
10881 AAGAATCATTGCTAGTCTTATTTTTGGGATGAACTTTGATTTTAACGAAAATAAGGCAAGGAAAA
650 AAGAATCATTGCTAGTCTTATTTTTGGGATGAACTTTGATTTTAACGAAAATAAGGCAAGGAAAA
10946 GATTTTCATGCAAAAGAAAATGATCGGTATCATTTATCCTAATGAGGAGAATGTTTTTATAGTGT
715 GATTTTCATGCAAAAGAAAATGATCGGTATCATTTATCCTAATGAGGAGAATGTTTTTATAGTGT
*
11011 CTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCAC-AAGTT
780 CTAATCACAAAATGAATGAAGATCATTACTAGAATCTATGTTTGTCTCATTTGAGGCACGAAGTT
11075 AGGCTTTATAACAATTGGTGGAAGAAAGCC-TTTTGAGAAGCCAAAGCATCATTATCATCTATAA
845 AGGCTTTATAACAATTGGTGGAAGAAAGCCTTTTTGAGAAGCCAAAGCATCATTAT-ATCTATAA
11139 TAACGGGAAGACTTTGTTTATGGCA-CTAATCCTAA
909 TAACGGGAAGACTTTGTTTATGGCACCTAATCCTAA
11174 AAAGAATGAGGATTAGTATGACTATTCACGTTTGCCTCTTTTGAGGGAGGAACTTTGATTCGATC
1 AAAGAATGAGGATTAGTATGACTATTCACGTTTGCCTCTTTTGAGGGAGGAACTTTGATTCGATC
11239 TAAAACGGTGTAAAGAAAAGCTTTTCTTGCGACACCAAATCATCAATGTCATGTATCCTAATGAT
66 TAAAACGGTGTAAAGAAAAGCTTTTCTTGCGACACCAAATCATCAATGTCATGTATCCTAATGAT
*
11304 GGGAATGTG--TTTGGTTTCGATTTTGGGAAAGAAAGGAGACTGTTATGAGAGTCTATGCTAGTC
131 GGGAATGTGTTTTTGGTTTCGATTTTGGGAAAGAAAGGAGACTGTTATGAGAGTCGATGCTAGTC
*
11367 TTATTTACGGGATGAACATTGATTTTAAGGAAAATAGGGTAAGGAAAATATTTCGATGCAAAAG-
196 TTATTTACGGGATGAACATTGATTTTAAGGAAAATAGGGTAAGGAAAAGATTTCGATGCAAAAGA
11431 AAATTATCAATATCGTTTATCCGAATGAGGAGAATGTTTTTATAGTGTCAAATCAGAAATGAATG
261 AAATTATCAATATCGTTTATCCGAATGAGGAGAATGTTTTTATAGTGTCAAATCAGAAATGAATG
11496 ATGATCATTGCTAGAATCTATATTTGACTCATTTGAGGCACAAAGTTAGACTTTGCAAAAATTGG
326 ATGATCATTGCTAGAATCTATATTTGACTCATTTGAGGCACAAAGTTAGACTTTGCAAAAATTGG
*
11561 AGAGAAGAAAGCCTTTCTTGAGAAGCCAAAGCATC-A-ATCATCTATCCTAATGACACAACTTTG
391 AGAGAAGAAAGCCTTTCTTGAGAAGCCAAAGCATCAATATCGTCTATCCTAATGACACAACTTTG
11624 TTTATGGTGCCAAATCCTGAAAATAATGCGATTAGTATGACTATTCATGTTTGTCTCCTTTGAGG
456 TTTATGGTGCCAAATCCTGAAAATAATGCGATTAGTATGACTATTCATGTTTGTCTCCTTTGAGG
11689 GATGAACTTTGATTCTATCAAAAATGATGGAAAGAAAAGTTTTTTCTTGCGACACCATATCATCA
521 GATGAACTTTGATTCTATCAAAAATGATGGAAAGAAAAG-TTTTTCTTGCGACACCATATCATCA
11754 ATGTCAT--ATCCTAACGAACGCAATGTCTTTTTTTCCCAATCTTTAAAAGAATGGAGACTTTAC
585 ATGTCATGCATCCTAACGAACGCAATGTCTTTTTTTCCCAATCTTTAAAAGAATGGAGACTTTAC
*
11817 AAGAATCCTTGCTAGTCTTATTTTTGGGATGAACTTTGATTTTAACGAAAAT-AGGCAAGGAAAA
650 AAGAATCATTGCTAGTCTTATTTTTGGGATGAACTTTGATTTTAACGAAAATAAGGCAAGGAAAA
* *
11881 GATTTACATGCAAAAGAAAATGATCGGTATCATTTATCCTAATGAGGAGATTGTTTTTATAGTGT
715 GATTTTCATGCAAAAGAAAATGATCGGTATCATTTATCCTAATGAGGAGAATGTTTTTATAGTGT
11946 CTAATCACAAAATGAATGAAGATCATTACTAGAATCTATGTTTGTCTCATTTGAGGCACGAAGTT
780 CTAATCACAAAATGAATGAAGATCATTACTAGAATCTATGTTTGTCTCATTTGAGGCACGAAGTT
*
12011 AGGCTTTATAGCAATTGGTGGGAA-AGAAGCCTTTTTGAGAAGCCAAAGCATCATTATCATCTAT
845 AGGCTTTATAACAATTGGT-GGAAGA-AAGCCTTTTTGAGAAGCCAAAGCATCATTAT-ATCTAT
12075 AATAACGGGAAGACTTTGTTTATGGCACCTAATCCTAA
907 AATAACGGGAAGACTTTGTTTATGGCACCTAATCCTAA
Statistics
Matches: 10618, Mismatches: 194, Indels: 729
0.92 0.02 0.06
Matches are distributed among these distances:
908 2 0.00
909 42 0.00
910 46 0.00
911 22 0.00
912 38 0.00
913 86 0.01
914 128 0.01
915 156 0.01
916 82 0.01
917 306 0.03
918 186 0.02
919 243 0.02
920 120 0.01
921 153 0.01
922 99 0.01
923 32 0.00
924 119 0.01
925 208 0.02
926 230 0.02
927 320 0.03
928 603 0.06
929 614 0.06
930 422 0.04
931 537 0.05
932 645 0.06
933 542 0.05
934 739 0.07
935 660 0.06
936 491 0.05
937 541 0.05
938 549 0.05
939 381 0.04
940 240 0.02
941 203 0.02
942 41 0.00
943 286 0.03
944 56 0.01
945 339 0.03
946 103 0.01
947 8 0.00
ACGTcount: A:0.34, C:0.14, G:0.20, T:0.32
Consensus pattern (944 bp):
AAAGAATGAGGATTAGTATGACTATTCACGTTTGCCTCTTTTGAGGGAGGAACTTTGATTCGATC
TAAAACGGTGTAAAGAAAAGCTTTTCTTGCGACACCAAATCATCAATGTCATGTATCCTAATGAT
GGGAATGTGTTTTTGGTTTCGATTTTGGGAAAGAAAGGAGACTGTTATGAGAGTCGATGCTAGTC
TTATTTACGGGATGAACATTGATTTTAAGGAAAATAGGGTAAGGAAAAGATTTCGATGCAAAAGA
AAATTATCAATATCGTTTATCCGAATGAGGAGAATGTTTTTATAGTGTCAAATCAGAAATGAATG
ATGATCATTGCTAGAATCTATATTTGACTCATTTGAGGCACAAAGTTAGACTTTGCAAAAATTGG
AGAGAAGAAAGCCTTTCTTGAGAAGCCAAAGCATCAATATCGTCTATCCTAATGACACAACTTTG
TTTATGGTGCCAAATCCTGAAAATAATGCGATTAGTATGACTATTCATGTTTGTCTCCTTTGAGG
GATGAACTTTGATTCTATCAAAAATGATGGAAAGAAAAGTTTTTCTTGCGACACCATATCATCAA
TGTCATGCATCCTAACGAACGCAATGTCTTTTTTTCCCAATCTTTAAAAGAATGGAGACTTTACA
AGAATCATTGCTAGTCTTATTTTTGGGATGAACTTTGATTTTAACGAAAATAAGGCAAGGAAAAG
ATTTTCATGCAAAAGAAAATGATCGGTATCATTTATCCTAATGAGGAGAATGTTTTTATAGTGTC
TAATCACAAAATGAATGAAGATCATTACTAGAATCTATGTTTGTCTCATTTGAGGCACGAAGTTA
GGCTTTATAACAATTGGTGGAAGAAAGCCTTTTTGAGAAGCCAAAGCATCATTATATCTATAATA
ACGGGAAGACTTTGTTTATGGCACCTAATCCTAA
Done.