Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold171
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 2364178
ACGTcount: A:0.28, C:0.16, G:0.16, T:0.28
Warning! 278680 characters in sequence are not A, C, G, or T
File 5 of 13
Found at i:770285 original size:22 final size:21
Alignment explanation
Indices: 770230--770306 Score: 61
Period size: 20 Copynumber: 3.7 Consensus size: 21
770220 TAAAAAACCA
* **
770230 AAATATATCGATACAA-CGAG
1 AAATGTATCGATACAATTTAG
**
770250 AAATGTATTAATACAATTGTA-
1 AAATGTATCGATACAATT-TAG
770271 AACATGTATCGATAC-ATTTAG
1 AA-ATGTATCGATACAATTTAG
*
770292 TAATGTATCGATACA
1 AAATGTATCGATACA
770307 TTTCCTTGGT
Statistics
Matches: 44, Mismatches: 8, Indels: 9
0.72 0.13 0.15
Matches are distributed among these distances:
20 27 0.61
21 6 0.14
22 11 0.25
ACGTcount: A:0.44, C:0.12, G:0.13, T:0.31
Consensus pattern (21 bp):
AAATGTATCGATACAATTTAG
Found at i:778767 original size:79 final size:77
Alignment explanation
Indices: 778667--778974 Score: 241
Period size: 79 Copynumber: 3.9 Consensus size: 77
778657 AAATAGGTGT
* * * *
778667 TTTGGAAATAAAATCGGGGTTGGAGTATCCACTCAGAAATAATAGGGTTGGAGTATCCCTGA-TG
1 TTTGAAAATAAAACCGAGGTTGGAGTATCCCCTCAGAAATAATAGGGTTGGAGTATCCCTGATTG
778731 ATAGAAAATCAACGC
66 -T-GAAAATCAA-GC
* * *
778746 TTTGAAAATAAAATCGAGGTTGGAGTATCCCCTC-GAAAATAA-CGAGGTTGGAGTA-CTTCTGA
1 TTTGAAAATAAAACCGAGGTTGGAGTATCCCCTCAG-AAATAATAG-GGTTGGAGTATC-CCTGA
*
778808 TTGTGGAAAATCGATGC
63 TTGT-GAAAATC-AAGC
** * * * * *
778825 TTT-AGAAATAAGGCCGGGGTTGGAGTATCCCCGCCA-AAATAATGGGGTTGAAGTATCCCCGAT
1 TTTGA-AAATAAAACCGAGGTTGGAGTATCCCC-TCAGAAATAATAGGGTTGGAGTATCCCTGAT
**
778888 TGTGAGAAATCAATA
64 TGTGA-AAATCAAGC
* * * * * * * *
778903 TCTTAAAAATAAAGCCGAGGTTAGAGTATCCTCTCAGAAATAACAAGATTGGAGTATCCCCGATT
1 T-TTGAAAATAAAACCGAGGTTGGAGTATCCCCTCAGAAATAATAGGGTTGGAGTATCCCTGATT
778968 GTGAAAA
65 GTGAAAA
778975 GATTGGTGTT
Statistics
Matches: 186, Mismatches: 29, Indels: 29
0.76 0.12 0.12
Matches are distributed among these distances:
78 13 0.07
79 166 0.89
80 7 0.04
ACGTcount: A:0.35, C:0.15, G:0.24, T:0.26
Consensus pattern (77 bp):
TTTGAAAATAAAACCGAGGTTGGAGTATCCCCTCAGAAATAATAGGGTTGGAGTATCCCTGATTG
TGAAAATCAAGC
Found at i:778968 original size:158 final size:158
Alignment explanation
Indices: 778636--779013 Score: 408
Period size: 158 Copynumber: 2.4 Consensus size: 158
778626 ACAACGGGGC
* * *
778636 TGGAGTATCCCCGATTATGGAAAATAGGTGTTTTGGAAATAAAATCGGGGTTGGAGTATCCACTC
1 TGGAGTATCCCCGATTGTGGAAAATAGGTGTTTTAGAAATAAAATCGGGGTTGGAGTATCCACCC
* * * * *
778701 AGAAATAATAGGGTTGGAGTATCCCTGATGATAGAAAATCAACGCTTTGAAAATAAAATCGAGGT
66 AGAAATAATAGGGTTGAAGTATCCCCGATGATAGAAAATCAAAGCTTTAAAAATAAAACCGAGGT
* * *
778766 TGGAGTATCCCCTCGAAAATAACGAGGT
131 TAGAGTATCCCCTCGAAAATAACAAGAT
* * * * * *** *
778794 TGGAGTA-CTTCTGATTGTGGAAAATCGATGCTTTAGAAATAAGGCCGGGGTTGGAGTATCCCCG
1 TGGAGTATC-CCCGATTGTGGAAAATAGGTGTTTTAGAAATAAAATCGGGGTTGGAGTATCCAC-
* * *
778858 CCA-AAATAATGGGGTTGAAGTATCCCCGATTG-T-GAGAAATCAATATC-TTAAAAATAAAGCC
64 CCAGAAATAATAGGGTTGAAGTATCCCCGA-TGATAGA-AAATCAA-AGCTTTAAAAATAAAACC
*
778919 GAGGTTAGAGTATCCTCTC-AGAAATAACAAGAT
126 GAGGTTAGAGTATCCCCTCGA-AAATAACAAGAT
* * *
778952 TGGAGTATCCCCGATTGTGAAAAGATTGGTGTTTTAGAAATAAAATTGGGGTTGGAGTATCC
1 TGGAGTATCCCCGATTGTGGAAA-ATAGGTGTTTTAGAAATAAAATCGGGGTTGGAGTATCC
779014 TCGATTGTGA
Statistics
Matches: 178, Mismatches: 34, Indels: 15
0.78 0.15 0.07
Matches are distributed among these distances:
157 4 0.02
158 137 0.77
159 37 0.21
ACGTcount: A:0.34, C:0.14, G:0.25, T:0.27
Consensus pattern (158 bp):
TGGAGTATCCCCGATTGTGGAAAATAGGTGTTTTAGAAATAAAATCGGGGTTGGAGTATCCACCC
AGAAATAATAGGGTTGAAGTATCCCCGATGATAGAAAATCAAAGCTTTAAAAATAAAACCGAGGT
TAGAGTATCCCCTCGAAAATAACAAGAT
Found at i:779023 original size:131 final size:131
Alignment explanation
Indices: 778867--779145 Score: 350
Period size: 131 Copynumber: 2.1 Consensus size: 131
778857 GCCAAAATAA
*
778867 TGGGGTTGAAGTATCCCCGATTGTGAGAAATCAATATCTTAAAAATAAAGCC-GAGG-TTAGAGT
1 TGGGGTTGGAGTATCCCCGATTGTGAGAAATCAATATCTTAAAAATAAAGCCAG-GGATTAGAGT
* * * *
778930 ATCCTCTCAG-AAATAACAAGATTGGAGTATCCCCGATTGTGAAAAGATTGGTGTTTT-AGAAAT
65 ATCCCCT-AGAAAATAACAAGATTGGAGTATCCCCAATTATGAAAA-ATTGATGTTTTGA-AAAT
*
778993 AAAAT
127 AAAAC
* * * *
778998 TGGGGTTGGAGTATCCTCGATTGTGAGAAATCAATATTTTAGAAATAAAGCCAGGGATTGGAGTA
1 TGGGGTTGGAGTATCCCCGATTGTGAGAAATCAATATCTTAAAAATAAAGCCAGGGATTAGAGTA
* ***
779063 TCCCCTTGAAAATAAGGGGATTGGAGTATCCCCAATTATGAAAAATTGATGTTTTGAAAATAAAA
66 TCCCCTAGAAAATAACAAGATTGGAGTATCCCCAATTATGAAAAATTGATGTTTTGAAAATAAAA
779128 C
131 C
**
779129 CAGGGTTGGAGTATCCC
1 TGGGGTTGGAGTATCCC
779146 TAAGATGAAA
Statistics
Matches: 127, Mismatches: 17, Indels: 8
0.84 0.11 0.05
Matches are distributed among these distances:
131 83 0.65
132 44 0.35
ACGTcount: A:0.35, C:0.13, G:0.24, T:0.28
Consensus pattern (131 bp):
TGGGGTTGGAGTATCCCCGATTGTGAGAAATCAATATCTTAAAAATAAAGCCAGGGATTAGAGTA
TCCCCTAGAAAATAACAAGATTGGAGTATCCCCAATTATGAAAAATTGATGTTTTGAAAATAAAA
C
Found at i:779059 original size:52 final size:52
Alignment explanation
Indices: 778949--779067 Score: 132
Period size: 52 Copynumber: 2.3 Consensus size: 52
778939 GAAATAACAA
*** * **
778949 GATTGGAGTATCCCCGATTGTGAAAAGATTGGTGTTTTAGAAATAAAATTGG
1 GATTGGAGTATCCCCGATTGTGAAAAGATCAATATTTTAGAAATAAAACAGG
* * * *
779001 GGTTGGAGTATCCTCGATTGTGAGAA-ATCAATATTTTAGAAATAAAGCCAGG
1 GATTGGAGTATCCCCGATTGTGAAAAGATCAATATTTTAGAAATAAA-ACAGG
779053 GATTGGAGTATCCCC
1 GATTGGAGTATCCCC
779068 TTGAAAATAA
Statistics
Matches: 54, Mismatches: 12, Indels: 2
0.79 0.18 0.03
Matches are distributed among these distances:
51 16 0.30
52 38 0.70
ACGTcount: A:0.32, C:0.12, G:0.26, T:0.30
Consensus pattern (52 bp):
GATTGGAGTATCCCCGATTGTGAAAAGATCAATATTTTAGAAATAAAACAGG
Found at i:779087 original size:80 final size:78
Alignment explanation
Indices: 778999--779145 Score: 188
Period size: 80 Copynumber: 1.9 Consensus size: 78
778989 AAATAAAATT
* * * * *
778999 GGGGTTGGAGTATCCTCGATTGTGAGAAATCAATATTTT-AGAAATAAAGCCAGGGATTGGAGTA
1 GGGGTTGGAGTATCCCCAATTATGAAAAATCAATATTTTGA-AAATAAAACCAGGG-TTGGAGTA
779063 TCCCCTTGAAAATAA
64 TCCCCTTGAAAATAA
** *
779078 GGGGATTGGAGTATCCCCAATTATGAAAAATTGATGTTTTGAAAATAAAACCAGGGTTGGAGTAT
1 GGGG-TTGGAGTATCCCCAATTATGAAAAATCAATATTTTGAAAATAAAACCAGGGTTGGAGTAT
779143 CCC
65 CCC
779146 TAAGATGAAA
Statistics
Matches: 58, Mismatches: 8, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
79 16 0.28
80 41 0.71
81 1 0.02
ACGTcount: A:0.34, C:0.13, G:0.25, T:0.28
Consensus pattern (78 bp):
GGGGTTGGAGTATCCCCAATTATGAAAAATCAATATTTTGAAAATAAAACCAGGGTTGGAGTATC
CCCTTGAAAATAA
Found at i:782132 original size:155 final size:154
Alignment explanation
Indices: 781953--782283 Score: 362
Period size: 155 Copynumber: 2.1 Consensus size: 154
781943 CCCTAACTTA
* * * * *
781953 TACCTTTGGCATAGAAGCGGACTCGGTAACAACCTAAGAGTTGATTTTAAAAAATTACGAAAATA
1 TACCTTCGGCATAAAAGCGGACTCGGTAACAACCTAAGACTCGATTGTAAAAAATTACGAAAATA
* * * * * * * **
782018 TCTCTAGTGGATACCTTCGACGTAAAAGTACTTGATACCTCTAAAAGACTTAAAAAGGATTTTAA
66 CCCCTAGGGGATACCTTCAACGTAAAAATACTCGATACCCCT-AAAGACTTAAAAAACATTTTAA
782083 -ATGGGAAAAACCTATCCTAAATGCC
130 GA-GGGAAAAACCTATCCTAAATGCC
* * * *
782108 TACCTTCGGCATAAAAAG-GGACTCGGTGATAACCTAGGACTCGATTGTAAAAAATTATGAAAAT
1 TACCTTCGGCAT-AAAAGCGGACTCGGTAACAACCTAAGACTCGATTGTAAAAAATTACGAAAAT
* * * *
782172 GCCCCTAGGGGATACTTTCAATGTAAAAATACTCGATACCCCTAAAGGCTTAAAAAACATTTTAA
65 ACCCCTAGGGGATACCTTCAACGTAAAAATACTCGATACCCCTAAAGACTTAAAAAACATTTTAA
** *
782237 GAGGGATGAACCTATCCTAAAT-AC
130 GAGGGAAAAACCTATCCTAAATGCC
**
782261 TCACCTTTAGCATAAAAGCGGAC
1 T-ACCTTCGGCATAAAAGCGGAC
782284 CTAGTGACAA
Statistics
Matches: 145, Mismatches: 27, Indels: 9
0.80 0.15 0.05
Matches are distributed among these distances:
153 7 0.05
154 50 0.34
155 84 0.58
156 4 0.03
ACGTcount: A:0.38, C:0.19, G:0.17, T:0.26
Consensus pattern (154 bp):
TACCTTCGGCATAAAAGCGGACTCGGTAACAACCTAAGACTCGATTGTAAAAAATTACGAAAATA
CCCCTAGGGGATACCTTCAACGTAAAAATACTCGATACCCCTAAAGACTTAAAAAACATTTTAAG
AGGGAAAAACCTATCCTAAATGCC
Found at i:782296 original size:154 final size:155
Alignment explanation
Indices: 781953--782382 Score: 386
Period size: 154 Copynumber: 2.8 Consensus size: 155
781943 CCCTAACTTA
* * * * * *
781953 TACCTTTGGCATAGAAGCGGACTCGGTAACAACCTAAGAGTTGATTTTAAAAAATTACGAAAATA
1 TACCTTTGGCATAAAAGCGGACTCGGTGACAACCTAGGACTCGATTGTAAAAAATTACGAAAATA
* * * * * * * **
782018 TCTCTAGTGGATACCTTCGACGTAAAAGTACTTGATACCTCTAAAAGACTTAAAAAGGATTTTAA
66 CCCCTAGGGGATACCTTCAACGTAAAAATACTCGATACCCCTAAAAGACTTAAAAAACATTTTAA
*
782083 ATGGGAAAAACCTATCCTAAATGCC
131 ATGGGAAAAACCTATCCTAAATACC
* * *
782108 TACCTTCGGCATAAAAAG-GGACTCGGTGATAACCTAGGACTCGATTGTAAAAAATTATGAAAAT
1 TACCTTTGGCAT-AAAAGCGGACTCGGTGACAACCTAGGACTCGATTGTAAAAAATTACGAAAAT
* * * *
782172 GCCCCTAGGGGATACTTTCAATGTAAAAATACTCGATACCCCT-AAAGGCTTAAAAAACATTTTA
65 ACCCCTAGGGGATACCTTCAACGTAAAAATACTCGATACCCCTAAAAGACTTAAAAAACATTTTA
**
782236 AGA-GGGATGAACCTATCCTAAATA-C
130 A-ATGGGAAAAACCTATCCTAAATACC
* * * * * * ** *
782261 TCACCTTTAGCATAAAAGCGGAC-CTAGTGACAACCTAGGAGTTGGTTCTGCAAAATTACGAAGA
1 T-ACCTTTGGCATAAAAGCGGACTC-GGTGACAACCTAGGACTCGATTGTAAAAAATTACGAAAA
** ** * * * * * *
782325 CGCCTTTAAGGGATACCTTCGACATAAAAGTACCCGATACCCCTAAAAGA-TGAAAAAA
64 TACCCCTAGGGGATACCTTCAACGTAAAAATACTCGATACCCCTAAAAGACTTAAAAAA
782383 GGTTGTAGAT
Statistics
Matches: 220, Mismatches: 49, Indels: 13
0.78 0.17 0.05
Matches are distributed among these distances:
153 8 0.04
154 120 0.55
155 88 0.40
156 4 0.02
ACGTcount: A:0.38, C:0.19, G:0.18, T:0.25
Consensus pattern (155 bp):
TACCTTTGGCATAAAAGCGGACTCGGTGACAACCTAGGACTCGATTGTAAAAAATTACGAAAATA
CCCCTAGGGGATACCTTCAACGTAAAAATACTCGATACCCCTAAAAGACTTAAAAAACATTTTAA
ATGGGAAAAACCTATCCTAAATACC
Found at i:783511 original size:20 final size:20
Alignment explanation
Indices: 783486--783565 Score: 63
Period size: 20 Copynumber: 3.7 Consensus size: 20
783476 GTTACAAGCT
783486 ATGTATCGATACAATTCATC
1 ATGTATCGATACAATTCATC
*
783506 ATGTATCGACACAATGTATCGATAC
1 ATGTATCGATACAA--T-TC-AT-C
* *
783531 AATGTATCGATAC-ATTGTACC
1 -ATGTATCGATACAATT-CATC
783552 ATGTATCGATACAA
1 ATGTATCGATACAA
783566 ATAGTAGAAA
Statistics
Matches: 48, Mismatches: 4, Indels: 15
0.72 0.06 0.22
Matches are distributed among these distances:
20 25 0.52
21 2 0.04
22 3 0.06
23 3 0.06
24 2 0.04
25 2 0.04
26 11 0.23
ACGTcount: A:0.36, C:0.19, G:0.14, T:0.31
Consensus pattern (20 bp):
ATGTATCGATACAATTCATC
Found at i:783541 original size:13 final size:13
Alignment explanation
Indices: 783506--783549 Score: 70
Period size: 13 Copynumber: 3.4 Consensus size: 13
783496 ACAATTCATC
*
783506 ATGTATCGACACA
1 ATGTATCGATACA
783519 ATGTATCGATACA
1 ATGTATCGATACA
783532 ATGTATCGATACA
1 ATGTATCGATACA
*
783545 TTGTA
1 ATGTA
783550 CCATGTATCG
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 29 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:783619 original size:20 final size:19
Alignment explanation
Indices: 783594--783648 Score: 65
Period size: 19 Copynumber: 2.8 Consensus size: 19
783584 CTGCCAATCT
* **
783594 CATGTATTGATACAATTGTC
1 CATGTATCGATACAATT-AA
*
783614 CATGTATCGATATAATTAA
1 CATGTATCGATACAATTAA
783633 CATGTATCGATACAAT
1 CATGTATCGATACAAT
783649 GTATCGATAC
Statistics
Matches: 30, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
19 15 0.50
20 15 0.50
ACGTcount: A:0.36, C:0.15, G:0.13, T:0.36
Consensus pattern (19 bp):
CATGTATCGATACAATTAA
Found at i:783652 original size:13 final size:13
Alignment explanation
Indices: 783634--783693 Score: 69
Period size: 13 Copynumber: 5.1 Consensus size: 13
783624 TATAATTAAC
783634 ATGTATCGATACA
1 ATGTATCGATACA
783647 ATGTATCGATACA
1 ATGTATCGATACA
*
783660 A---AGC-AT--A
1 ATGTATCGATACA
783667 ATGTATCGATACA
1 ATGTATCGATACA
783680 ATGTATCGATACA
1 ATGTATCGATACA
783693 A
1 A
783694 AGCATAATAT
Statistics
Matches: 39, Mismatches: 2, Indels: 12
0.74 0.04 0.23
Matches are distributed among these distances:
7 2 0.05
9 2 0.05
10 4 0.10
11 2 0.05
13 29 0.74
ACGTcount: A:0.42, C:0.15, G:0.15, T:0.28
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:783671 original size:20 final size:20
Alignment explanation
Indices: 783646--783712 Score: 76
Period size: 20 Copynumber: 3.7 Consensus size: 20
783636 GTATCGATAC
783646 AATGTATCGATACAAAGCAT
1 AATGTATCGATACAAAGCAT
783666 AATGTATCGAT----A-C--
1 AATGTATCGATACAAAGCAT
783679 AATGTATCGATACAAAGCAT
1 AATGTATCGATACAAAGCAT
*
783699 AATATATCGATACA
1 AATGTATCGATACA
783713 TCTGAGTGTG
Statistics
Matches: 39, Mismatches: 1, Indels: 14
0.72 0.02 0.26
Matches are distributed among these distances:
13 11 0.28
15 1 0.03
16 1 0.03
17 1 0.03
18 1 0.03
20 24 0.62
ACGTcount: A:0.45, C:0.15, G:0.13, T:0.27
Consensus pattern (20 bp):
AATGTATCGATACAAAGCAT
Found at i:783676 original size:33 final size:33
Alignment explanation
Indices: 783634--783712 Score: 149
Period size: 33 Copynumber: 2.4 Consensus size: 33
783624 TATAATTAAC
783634 ATGTATCGATACAATGTATCGATACAAAGCATA
1 ATGTATCGATACAATGTATCGATACAAAGCATA
783667 ATGTATCGATACAATGTATCGATACAAAGCATA
1 ATGTATCGATACAATGTATCGATACAAAGCATA
*
783700 ATATATCGATACA
1 ATGTATCGATACA
783713 TCTGAGTGTG
Statistics
Matches: 45, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
33 45 1.00
ACGTcount: A:0.43, C:0.15, G:0.14, T:0.28
Consensus pattern (33 bp):
ATGTATCGATACAATGTATCGATACAAAGCATA
Found at i:784956 original size:23 final size:23
Alignment explanation
Indices: 784926--784969 Score: 79
Period size: 23 Copynumber: 1.9 Consensus size: 23
784916 TGGAAATTTG
784926 TTTTTTTTCTTAGTGTTTTTGTA
1 TTTTTTTTCTTAGTGTTTTTGTA
*
784949 TTTTTTTTCTTGGTGTTTTTG
1 TTTTTTTTCTTAGTGTTTTTG
784970 CTTCAATCTC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.05, C:0.05, G:0.16, T:0.75
Consensus pattern (23 bp):
TTTTTTTTCTTAGTGTTTTTGTA
Found at i:785656 original size:166 final size:167
Alignment explanation
Indices: 785473--785842 Score: 392
Period size: 166 Copynumber: 2.2 Consensus size: 167
785463 ATGGAAGTTT
* * *
785473 AATAACAATATTAGATGAATTTTAAAAATTTTAAACCAAAG-AAAACCCCCTCAAAAATACTTAT
1 AATAATAATATTAGATGAATTTTAAAAATTTTAAAACAAAGAAAAACCCCCTCAAAAACACTTAT
* * *
785537 -AGAGTAGAAAAC-TCTGTATTTCAAAAATATGA-AATTTTCAAGGAAAAAATT-CAAAACTCAT
66 GA-AATAGAAAACTTC-GTATTTCAAAAATAGGAGAA-TTTCAA-GAAAAAATTGAAAAACTCAT
* * * *
785598 GAATATGAATGAATTTTTCAGAACTGATTTAATGTGAATCA
127 GAAGATGAATGAATTTTTCAAAACTAATTTAATATGAATCA
* * * * ** ** * *
785639 AATGATAATATTAGATGAA-TTTAAAAAATTAAAAACTAAGAAAAATTCTTTCGAAAACATTTAT
1 AATAATAATATTAGATGAATTTTAAAAATTTTAAAACAAAGAAAAACCCCCTCAAAAACACTTAT
*
785703 GAAATAGAAAACTTCGTATTTCGAAAATAGGAGAATTTCAAGAAAAAATTGAAAAACTCATGAAG
66 GAAATAGAAAACTTCGTATTTCAAAAATAGGAGAATTTCAAGAAAAAATTGAAAAACTCATGAAG
* * * * * *
785768 ATGATTGGATTTTTGAAAACTAATTTAATATTAGTTA
131 ATGAATGAATTTTTCAAAACTAATTTAATATGAATCA
* *
785805 AATAATAATATTTGATAAATTTTAAAAAATTTTAAAAC
1 AATAATAATATTAGATGAATTTT-AAAAATTTTAAAAC
785843 CATGAAAATC
Statistics
Matches: 165, Mismatches: 32, Indels: 12
0.79 0.15 0.06
Matches are distributed among these distances:
165 26 0.16
166 119 0.72
167 8 0.05
168 12 0.07
ACGTcount: A:0.49, C:0.09, G:0.11, T:0.32
Consensus pattern (167 bp):
AATAATAATATTAGATGAATTTTAAAAATTTTAAAACAAAGAAAAACCCCCTCAAAAACACTTAT
GAAATAGAAAACTTCGTATTTCAAAAATAGGAGAATTTCAAGAAAAAATTGAAAAACTCATGAAG
ATGAATGAATTTTTCAAAACTAATTTAATATGAATCA
Found at i:788785 original size:79 final size:79
Alignment explanation
Indices: 788681--788882 Score: 264
Period size: 79 Copynumber: 2.6 Consensus size: 79
788671 AGATAAAAAA
* * *
788681 GGGGTCAGAGTA-CCCCTCAGAAATAATGGGGTTGGAGTATCCCCAATGGTGGAAAATCAATGTT
1 GGGGTTAGAGTATCCCCTCAGAAATAATGGGGTTGGAGTATCCCCAATGATGAAAAATCAATGTT
*
788745 CTGGAAATAAAATC
66 CTGAAAATAAAATC
* * * ***
788759 GGGGTTGGAGTATCCCCTCAGAAATAATGGGGTTGGAGTATCCTCAATTATGAAAAATTGGTGTT
1 GGGGTTAGAGTATCCCCTCAGAAATAATGGGGTTGGAGTATCCCCAATGATGAAAAATCAATGTT
* *
788824 TTGAAAATAAGATC
66 CTGAAAATAAAATC
*
788838 GGGGTTAGAGTATCCCCTC-GAAAATAATAGGGTTGGAGTATCCCC
1 GGGGTTAGAGTATCCCCTCAG-AAATAATGGGGTTGGAGTATCCCC
788883 TCAAAAATAA
Statistics
Matches: 107, Mismatches: 15, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
78 11 0.10
79 96 0.90
ACGTcount: A:0.31, C:0.15, G:0.27, T:0.26
Consensus pattern (79 bp):
GGGGTTAGAGTATCCCCTCAGAAATAATGGGGTTGGAGTATCCCCAATGATGAAAAATCAATGTT
CTGAAAATAAAATC
Found at i:788876 original size:28 final size:28
Alignment explanation
Indices: 788839--788910 Score: 117
Period size: 28 Copynumber: 2.6 Consensus size: 28
788829 AATAAGATCG
* *
788839 GGGTTAGAGTATCCCCTCGAAAATAATA
1 GGGTTGGAGTATCCCCTCAAAAATAATA
*
788867 GGGTTGGAGTATCCCCTCAAAAATAATG
1 GGGTTGGAGTATCCCCTCAAAAATAATA
788895 GGGTTGGAGTATCCCC
1 GGGTTGGAGTATCCCC
788911 GATTGTGAAA
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 41 1.00
ACGTcount: A:0.29, C:0.19, G:0.26, T:0.25
Consensus pattern (28 bp):
GGGTTGGAGTATCCCCTCAAAAATAATA
Found at i:788882 original size:107 final size:107
Alignment explanation
Indices: 788760--788987 Score: 359
Period size: 107 Copynumber: 2.1 Consensus size: 107
788750 AATAAAATCG
* *
788760 GGGTTGGAGTATCCCCTCAGAAATAATGGGGTTGGAGTATCCTCAATTATGAAAAATTGGTGTTT
1 GGGTTGGAGTATCCCCTCAAAAATAATGGGGTTGGAGTATCCCCAATTATGAAAAATTGGTGTTT
* *
788825 TGAAAATAAGA-TCGGGGTTAGAGTATCCCCTCGAAAATAATA
66 TAAAAATAAAACT-GGGGTTAGAGTATCCCCTCGAAAATAATA
* *
788867 GGGTTGGAGTATCCCCTCAAAAATAATGGGGTTGGAGTATCCCCGATTGTGAAAAATTGGTGTTT
1 GGGTTGGAGTATCCCCTCAAAAATAATGGGGTTGGAGTATCCCCAATTATGAAAAATTGGTGTTT
* * *
788932 TAAAAATAAAACTGGGGTTGGAGTATTCCCTCGAAAATAATG
66 TAAAAATAAAACTGGGGTTAGAGTATCCCCTCGAAAATAATA
788974 GGGTTGGAGTATCC
1 GGGTTGGAGTATCC
788988 TCGATTGTGA
Statistics
Matches: 111, Mismatches: 9, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
107 110 0.99
108 1 0.01
ACGTcount: A:0.31, C:0.13, G:0.27, T:0.29
Consensus pattern (107 bp):
GGGTTGGAGTATCCCCTCAAAAATAATGGGGTTGGAGTATCCCCAATTATGAAAAATTGGTGTTT
TAAAAATAAAACTGGGGTTAGAGTATCCCCTCGAAAATAATA
Found at i:788950 original size:79 final size:79
Alignment explanation
Indices: 788867--789280 Score: 519
Period size: 79 Copynumber: 5.2 Consensus size: 79
788857 GAAAATAATA
*
788867 GGGTTGGAGTATCCCCTCAAAAATAATGGGGTTGGAGTATCCCCGATTGTGAAAAATTGGTGTTT
1 GGGTTGGAGTATCCCCTCAAAAATAATGGGGTTGGAGTATCCCTGATTGTGAAAAATTGGTGTTT
*
788932 TAAAAATAAAACTG
66 TAGAAATAAAACTG
* * *
788946 GGGTTGGAGTATTCCCTCGAAAATAATGGGGTTGGAGTAT-CCTCGATTGTGAAAAATTGGGGTT
1 GGGTTGGAGTATCCCCTCAAAAATAATGGGGTTGGAGTATCCCT-GATTGTGAAAAATTGGTGTT
*
789010 TTAGAAATAAAACTA
65 TTAGAAATAAAACTG
* * *
789025 GGGTTGGAGTATCCCCTCAGAAATAATGGGGGTTAGAGTATCCCTGATTGTGGAAAATTGGTGTT
1 GGGTTGGAGTATCCCCTCAAAAATAAT-GGGGTTGGAGTATCCCTGATTGTGAAAAATTGGTGTT
* *
789090 TTGGAAATAAAACCG
65 TTAGAAATAAAACTG
* * * * * *
789105 GGGTTAGAGTATCCCCTTAGAAATAACGGGGTTGAAGTATCTCTGATTGTGAAAAATTGGTGTTT
1 GGGTTGGAGTATCCCCTCAAAAATAATGGGGTTGGAGTATCCCTGATTGTGAAAAATTGGTGTTT
*
789170 TAGGAATAAAA-TCG
66 TAGAAATAAAACT-G
* * * * * *
789184 AGGTTGGAGTATCCCCTCAAAAATAACGAGGTTAGG-GTATCTCTGACTATGAAAAATTGGTGTT
1 GGGTTGGAGTATCCCCTCAAAAATAATGGGGTT-GGAGTATCCCTGATTGTGAAAAATTGGTGTT
* * **
789248 TTGGGAATAAAACCA
65 TTAGAAATAAAACTG
789263 GGGTTGGAGTATCCCCTC
1 GGGTTGGAGTATCCCCTC
789281 GGAAATAAAA
Statistics
Matches: 292, Mismatches: 37, Indels: 12
0.86 0.11 0.04
Matches are distributed among these distances:
78 2 0.01
79 220 0.75
80 67 0.23
81 3 0.01
ACGTcount: A:0.31, C:0.13, G:0.27, T:0.29
Consensus pattern (79 bp):
GGGTTGGAGTATCCCCTCAAAAATAATGGGGTTGGAGTATCCCTGATTGTGAAAAATTGGTGTTT
TAGAAATAAAACTG
Found at i:789037 original size:186 final size:187
Alignment explanation
Indices: 788682--789068 Score: 500
Period size: 186 Copynumber: 2.1 Consensus size: 187
788672 GATAAAAAAG
* * *
788682 GGGTCAGAGTA-CCCCTCAGAAATAATGGGGTTGGAGTATCCCCAATGGTGGAAAATCAATGTTC
1 GGGTTAGAGTATCCCCTCAAAAATAATGGGGTTGGAGTATCCCCAATGGTGAAAAATCAATGTTC
**
788746 TGGAAATAAAATCGGGGTTGGAGTATCCCCTCAGAAATAATGGGGTTGGAGTATCCTCAATTATG
66 TAAAAATAAAATCGGGGTTGGAGTATCCCCTCAGAAATAATGGGGTTGGAGTATCCTCAATTATG
* * *
788811 AAAAATTGGTGTTTTGAAAATAAGATCGGGGTTAGAGTATCCCCTC-GAAAATAAT-A
131 AAAAATTGGGGTTTTGAAAATAAAATCAGGGTTAGAGTATCCCCTCAG-AAATAATGA
* * * *** *
788867 GGGTTGGAGTATCCCCTCAAAAATAATGGGGTTGGAGTATCCCCGATTGTGAAAAATTGGTGTTT
1 GGGTTAGAGTATCCCCTCAAAAATAATGGGGTTGGAGTATCCCCAATGGTGAAAAATCAATGTTC
* * *
788932 TAAAAATAAAA-CTGGGGTTGGAGTATTCCCTC-GAAAATAATGGGGTTGGAGTATCCTCGATTG
66 TAAAAATAAAATC-GGGGTTGGAGTATCCCCTCAG-AAATAATGGGGTTGGAGTATCCTCAATTA
* *
788995 TGAAAAATTGGGGTTTT-AGAAATAAAA-CTAGGGTTGGAGTATCCCCTCAGAAATAATGG
129 TGAAAAATTGGGGTTTTGA-AAATAAAATC-AGGGTTAGAGTATCCCCTCAGAAATAATGA
789054 GGGTTAGAGTATCCC
1 GGGTTAGAGTATCCC
789069 TGATTGTGGA
Statistics
Matches: 174, Mismatches: 21, Indels: 12
0.84 0.10 0.06
Matches are distributed among these distances:
185 13 0.07
186 146 0.84
187 15 0.09
ACGTcount: A:0.32, C:0.14, G:0.27, T:0.28
Consensus pattern (187 bp):
GGGTTAGAGTATCCCCTCAAAAATAATGGGGTTGGAGTATCCCCAATGGTGAAAAATCAATGTTC
TAAAAATAAAATCGGGGTTGGAGTATCCCCTCAGAAATAATGGGGTTGGAGTATCCTCAATTATG
AAAAATTGGGGTTTTGAAAATAAAATCAGGGTTAGAGTATCCCCTCAGAAATAATGA
Found at i:789108 original size:159 final size:157
Alignment explanation
Indices: 788863--789288 Score: 577
Period size: 159 Copynumber: 2.7 Consensus size: 157
788853 CCTCGAAAAT
* *
788863 AATAGGGTTGGAGTATCCCCTCAAAAATAATGGGGTTGGAGTATCCCCGATTGTGAAAAATTGGT
1 AATAGGGTTGGAGTATCCCCTCAAAAATAATGGGGTTAGAGTATCCCTGATTGTGAAAAATTGGT
** * * * *
788928 GTTTTAAAAATAAAACTGGGGTTGGAGTATTCCCTCGAAAATAATGGGGTTGGAGTATC-CTCGA
66 GTTTTGGAAATAAAACCGGGGTTGGAGTATCCCCTCGAAAATAACGGGGTTGAAGTATCTCT-GA
788992 TTGTGAAAAATTGGGGTTTTAGAAATAA
130 TTGTGAAAAATTGGGGTTTTAGAAATAA
* *
789020 AACTAGGGTTGGAGTATCCCCTCAGAAATAATGGGGGTTAGAGTATCCCTGATTGTGGAAAATTG
1 AA-TAGGGTTGGAGTATCCCCTCAAAAATAAT-GGGGTTAGAGTATCCCTGATTGTGAAAAATTG
* *
789085 GTGTTTTGGAAATAAAACCGGGGTTAGAGTATCCCCT-TAGAAATAACGGGGTTGAAGTATCTCT
64 GTGTTTTGGAAATAAAACCGGGGTTGGAGTATCCCCTCGA-AAATAACGGGGTTGAAGTATCTCT
* *
789149 GATTGTGAAAAATTGGTGTTTTAGGAATAA
128 GATTGTGAAAAATTGGGGTTTTAGAAATAA
* * * * * * *
789179 AATCGAGGTTGGAGTATCCCCTCAAAAATAACGAGGTTAGGGTATCTCTGACTATGAAAAATTGG
1 AATAG-GGTTGGAGTATCCCCTCAAAAATAATGGGGTTAGAGTATCCCTGATTGTGAAAAATTGG
* * *
789244 TGTTTTGGGAATAAAACCAGGGTTGGAGTATCCCCTCGGAAATAA
65 TGTTTTGGAAATAAAACCGGGGTTGGAGTATCCCCTCGAAAATAA
789289 AAACATGAAT
Statistics
Matches: 235, Mismatches: 28, Indels: 11
0.86 0.10 0.04
Matches are distributed among these distances:
157 2 0.01
158 97 0.41
159 134 0.57
160 2 0.01
ACGTcount: A:0.32, C:0.12, G:0.27, T:0.29
Consensus pattern (157 bp):
AATAGGGTTGGAGTATCCCCTCAAAAATAATGGGGTTAGAGTATCCCTGATTGTGAAAAATTGGT
GTTTTGGAAATAAAACCGGGGTTGGAGTATCCCCTCGAAAATAACGGGGTTGAAGTATCTCTGAT
TGTGAAAAATTGGGGTTTTAGAAATAA
Found at i:791716 original size:20 final size:20
Alignment explanation
Indices: 791691--791728 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
791681 GGTAAAACCC
791691 ATAATGTATCGATACAAAGA
1 ATAATGTATCGATACAAAGA
*
791711 ATAATGTATTGATACAAA
1 ATAATGTATCGATACAAA
791729 TTGTGGAAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.50, C:0.08, G:0.13, T:0.29
Consensus pattern (20 bp):
ATAATGTATCGATACAAAGA
Found at i:792417 original size:42 final size:42
Alignment explanation
Indices: 792324--792463 Score: 126
Period size: 41 Copynumber: 3.3 Consensus size: 42
792314 AAAAGGAGTA
* * *
792324 CATCCTGGTCTTCGAGGACAAAAGAA-AATAAGGAAATTAAATGTG
1 CATCCTGCTCTTTGAAGACAAAA-AAGAA-AAGGAAA-TAAA-GTG
*
792369 --TTCTGCTCTTTGAAGACAAAAAAGAAAAGGAAATAAAGTG
1 CATCCTGCTCTTTGAAGACAAAAAAGAAAAGGAAATAAAGTG
** * *
792409 CATCCTGCTCTTTGAAGAC-AAAGGGAAAAGGAAAGAAAGCG
1 CATCCTGCTCTTTGAAGACAAAAAAGAAAAGGAAATAAAGTG
**
792450 TGTCCTGCTCTTTG
1 CATCCTGCTCTTTG
792464 GGGACTAGAA
Statistics
Matches: 81, Mismatches: 11, Indels: 10
0.79 0.11 0.10
Matches are distributed among these distances:
40 3 0.04
41 34 0.42
42 25 0.31
43 19 0.23
ACGTcount: A:0.39, C:0.15, G:0.23, T:0.23
Consensus pattern (42 bp):
CATCCTGCTCTTTGAAGACAAAAAAGAAAAGGAAATAAAGTG
Found at i:792539 original size:61 final size:60
Alignment explanation
Indices: 792452--793070 Score: 588
Period size: 61 Copynumber: 10.4 Consensus size: 60
792442 AGAAAGCGTG
* * * * **
792452 TCCTGCTCTTTGGGGACTAGAAGGTGCCACCAAATTGTATGGGCTTTGCAAGGAGAAAGCA
1 TCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGA-AAAGCA
* * * *
792513 TCCTACTCTTTGAGGACTAAAAGGTGCCACC-AGTTCATGTGGGCTTTAAAAAGGAAAGGCA
1 TCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTT-GTGTGGGCTTT-AAAAGGAAAAGCA
* * * * * * * *
792574 TCTTGCTCTTTGAGGATTGAAAGGTGACACCAACTTGTTTAGGCTTTAAAAGGAGAAGGCG
1 TCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGA-AAAGCA
* ** * *
792635 TCCTGCTCTTTGAGAACTAAAACATGCCACCAACTTTTGTGAGCTTTAAAAGG--AA--A
1 TCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGCA
** * * *
792691 TGGTG-TC-CT---GACTAAAAGGTGCCACAAACTTGTGTGGGCTTTGAAAGGAAAATG--
1 TCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAA-GCA
* *
792745 TCCTACTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAATG-A
1 TCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAA-GCA
* * *
792805 GTCCTACTCTTTGAGGACTAGAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGG-AAAGCA
1 -TCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGCA
* *
792865 TCCTGCTCTTTGAGAACTAGAAA-GTGCCACCAACTTGTGTGGGCATTAAAAGGAAAAGGCA
1 TCCTGCTCTTTGAGGACTA-AAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAA-GCA
* * * **
792926 TCCTACTCTTTGGGGACTAAAAGGTGCCACCAACTTGTATGGGCTTTAAAAGGAAAAGTTG
1 TCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAG-CA
* * * *
792987 TCCTGCTTTTTGAGGACTGAAAA-GTGCCACCAACTTGTGTAGGCTTCAAACGGAAAAGGCA
1 TCCTGCTCTTTGAGGACT-AAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAA-GCA
* * *
793048 TCTTG-TTTTTGAGGACTGAAAGG
1 TCCTGCTCTTTGAGGACTAAAAGG
793071 ATAAAAAGTT
Statistics
Matches: 459, Mismatches: 75, Indels: 49
0.79 0.13 0.08
Matches are distributed among these distances:
51 32 0.07
53 2 0.00
54 3 0.01
55 4 0.01
56 4 0.01
58 1 0.00
59 91 0.20
60 36 0.08
61 273 0.59
62 13 0.03
ACGTcount: A:0.29, C:0.18, G:0.26, T:0.26
Consensus pattern (60 bp):
TCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGCA
Found at i:792914 original size:120 final size:118
Alignment explanation
Indices: 792452--793049 Score: 556
Period size: 120 Copynumber: 5.0 Consensus size: 118
792442 AGAAAGCGTG
* * * * * * **
792452 TCCTGCTCTTTGGGGACTAGAAGGTGCCACCAAATTGTATGGGCTTTGCAAGGAGAAAGCATCCT
1 TCCTACTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTTG-AAAG-GAAAGTGTCCT
* * * *
792517 ACTCTTTGAGGACTAAAAGGTGCCACC-AGTTCATGTGGGCTTTAAAAAGG-AAAGGCA
64 GCTCTTTGAGGACTGAAA-GTGCCACCAACTT-GTGTGGGC-TT-AAAAGGAAAAGGCA
* * * * * * * * *
792574 TCTTGCTCTTTGAGGATTGAAAGGTGACACCAACTTGTTTAGGCTTTAAAAGGAGAAGGCGTCCT
1 TCCTACTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGA-AA-GTGTCCT
* * * * * *
792639 GCTCTTTGAGAACTAAAACATGCCACCAACTTTTGTGAGCTTTAAAAGGAAATGG--
64 GCTCTTTGAGGACTGAAA-GTGCCACCAACTTGTGTGGGC-TTAAAAGGAAAAGGCA
* * * *
792694 T-GT-C-C--T---GACTAAAAGGTGCCACAAACTTGTGTGGGCTTTGAAAGGAAAATGTCCTAC
1 TCCTACTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGAAAGTGTCCTGC
*
792751 TCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAATG-A
66 TCTTTGAGGACTGAAA-GTGCCACCAACTTGTGTGGGC-TTAAAAGGAAAAGGCA
* **
792805 GTCCTACTCTTTGAGGACTAGAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGAAAGCATCCTG
1 -TCCTACTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGAAAGTGTCCTG
*
792870 CTCTTTGAGAACTAGAAAGTGCCACCAACTTGTGTGGGCATTAAAAGGAAAAGGCA
65 CTCTTTGAGGACT-GAAAGTGCCACCAACTTGTGTGGGC-TTAAAAGGAAAAGGCA
* * *
792926 TCCTACTCTTTGGGGACTAAAAGGTGCCACCAACTTGTATGGGCTTTAAAAGGAAAAGTTGTCCT
1 TCCTACTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGG-AAAG-TGTCCT
* * *
792991 GCTTTTTGAGGACTGAAAAGTGCCACCAACTTGTGTAGGCTTCAAACGGAAAAGGCA
64 GCTCTTTGAGGACTG-AAAGTGCCACCAACTTGTGTGGGCTT-AAAAGGAAAAGGCA
793048 TC
1 TC
793050 TTGTTTTTGA
Statistics
Matches: 397, Mismatches: 59, Indels: 40
0.80 0.12 0.08
Matches are distributed among these distances:
110 51 0.13
111 2 0.01
112 34 0.09
113 1 0.00
114 1 0.00
115 2 0.01
117 2 0.01
118 1 0.00
119 1 0.00
120 142 0.36
121 23 0.06
122 134 0.34
123 3 0.01
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (118 bp):
TCCTACTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGAAAGTGTCCTGC
TCTTTGAGGACTGAAAGTGCCACCAACTTGTGTGGGCTTAAAAGGAAAAGGCA
Found at i:794023 original size:1 final size:1
Alignment explanation
Indices: 794017--794079 Score: 54
Period size: 1 Copynumber: 63.0 Consensus size: 1
794007 AAGTAGGTTC
* * * * * * * *
794017 TTTTTTTTCTCTTTTCTTTTTTCTTTTTTTTTTTTTTTTTTGTGTTTTGTTTTGTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
794080 ATAAAAAAAG
Statistics
Matches: 46, Mismatches: 16, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
1 46 1.00
ACGTcount: A:0.00, C:0.06, G:0.06, T:0.87
Consensus pattern (1 bp):
T
Found at i:804056 original size:4 final size:4
Alignment explanation
Indices: 804047--804077 Score: 53
Period size: 4 Copynumber: 7.8 Consensus size: 4
804037 AAACAAAACA
*
804047 AAAT AAAT AAAT GAAT AAAT AAAT AAAT AAA
1 AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAA
804078 CACCTCAAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
4 25 1.00
ACGTcount: A:0.74, C:0.00, G:0.03, T:0.23
Consensus pattern (4 bp):
AAAT
Found at i:806432 original size:158 final size:158
Alignment explanation
Indices: 806144--806551 Score: 527
Period size: 158 Copynumber: 2.6 Consensus size: 158
806134 AAATGGGGTC
* * * * * * * *
806144 GGAGTACCCCCTTAGAAATAACAGGGTTAGAGTAT-CCCTATTGGTGGAAAATCGATTTTTTGGA
1 GGAGTATCCCCTCAGAAATAACGGGGTTGGAGTATCCCCGATT-GTGAAAAATTGATGTTTTGGA
* *
806208 AATAAAATCGGGGTTGGAGTATCCCTTCAAAAATAACGGGGTTGGAGTATCCCCGATTGTGGAAA
65 AATAAAATCGGGGTTGGAGTATCCCCTCAAAAATAACGGGGTTGGAGTATCCCCAATTGTGGAAA
**
806273 ATTGGTGTTTT-GGAAATATGACCAGCGTT
130 ATTGGTGTTTTAGG-AATAAAACCAGCGTT
* *
806302 GGAGTATCCCTTC-GAAAATCACGGGGTTGGAGTATCCCCGATTGTGAAAAATTGATGTTTTGGA
1 GGAGTATCCCCTCAG-AAATAACGGGGTTGGAGTATCCCCGATTGTGAAAAATTGATGTTTTGGA
* * *
806366 AATAAAATCGAGGTTGGTGTATCCCCTCAAAAATAACGGGGTTGGAGTATCCCTAATTGTGGAAA
65 AATAAAATCGGGGTTGGAGTATCCCCTCAAAAATAACGGGGTTGGAGTATCCCCAATTGTGGAAA
* *
806431 ATTGGTGTTTTAGGAATAAAACCGGGGTT
130 ATTGGTGTTTTAGGAATAAAACCAGCGTT
* * * * * *
806460 GGAGTATCCCCTCAGAAATAACGAGATTGGGGTATCCTCGATTGTGAAAAATTGGTGTTTTGGGA
1 GGAGTATCCCCTCAGAAATAACGGGGTTGGAGTATCCCCGATTGTGAAAAATTGATGTTTTGGAA
806525 ATAAAA-CTGGGGTTGGAGTATCCCCTC
66 ATAAAATC-GGGGTTGGAGTATCCCCTC
806552 GGAAATAAAA
Statistics
Matches: 216, Mismatches: 29, Indels: 10
0.85 0.11 0.04
Matches are distributed among these distances:
157 2 0.01
158 205 0.95
159 9 0.04
ACGTcount: A:0.29, C:0.15, G:0.27, T:0.29
Consensus pattern (158 bp):
GGAGTATCCCCTCAGAAATAACGGGGTTGGAGTATCCCCGATTGTGAAAAATTGATGTTTTGGAA
ATAAAATCGGGGTTGGAGTATCCCCTCAAAAATAACGGGGTTGGAGTATCCCCAATTGTGGAAAA
TTGGTGTTTTAGGAATAAAACCAGCGTT
Found at i:806549 original size:79 final size:78
Alignment explanation
Indices: 806130--806559 Score: 463
Period size: 79 Copynumber: 5.4 Consensus size: 78
806120 TATTTTTGAG
* * * * * * *
806130 ATAAAAATGGGGTCGGAGTACCCCCTTAGAAATAACAGGGTTAGAGTATCCCTATTGGTGGAAAA
1 ATAAAACTGGGGTTGGAGTATCCCCTCAGAAATAACGGGGTTGGAGTATCCCGATT-GTGGAAAA
* * *
806195 TCGATTTTTTGGAA
65 TTGGTGTTTTGGAA
* *
806209 ATAAAA-TCGGGGTTGGAGTATCCCTTCAAAAATAACGGGGTTGGAGTATCCCCGATTGTGGAAA
1 ATAAAACT-GGGGTTGGAGTATCCCCTCAGAAATAACGGGGTTGGAGTAT-CCCGATTGTGGAAA
806273 ATTGGTGTTTTGGAA
64 ATTGGTGTTTTGGAA
** ** * * * *
806288 ATATGACCAGCGTTGGAGTATCCCTTC-GAAAATCACGGGGTTGGAGTATCCCCGATTGTGAAAA
1 ATAAAACTGGGGTTGGAGTATCCCCTCAG-AAATAACGGGGTTGGAGTAT-CCCGATTGTGGAAA
*
806352 ATTGATGTTTTGGAA
64 ATTGGTGTTTTGGAA
* * * *
806367 ATAAAA-TCGAGGTTGGTGTATCCCCTCAAAAATAACGGGGTTGGAGTATCCCTAATTGTGGAAA
1 ATAAAACT-GGGGTTGGAGTATCCCCTCAGAAATAACGGGGTTGGAGTATCCC-GATTGTGGAAA
806431 ATTGGTGTTTTAGG-A
64 ATTGGTGTTTT-GGAA
* * * * *
806446 ATAAAACCGGGGTTGGAGTATCCCCTCAGAAATAACGAGATTGGGGTATCCTCGATTGTGAAAAA
1 ATAAAACTGGGGTTGGAGTATCCCCTCAGAAATAACGGGGTTGGAGTATCC-CGATTGTGGAAAA
*
806511 TTGGTGTTTTGGGA
65 TTGGTGTTTTGGAA
*
806525 ATAAAACTGGGGTTGGAGTATCCCCTCGGAAATAA
1 ATAAAACTGGGGTTGGAGTATCCCCTCAGAAATAA
806560 AAACATGAAT
Statistics
Matches: 296, Mismatches: 44, Indels: 22
0.82 0.12 0.06
Matches are distributed among these distances:
78 6 0.02
79 281 0.95
80 9 0.03
ACGTcount: A:0.30, C:0.14, G:0.27, T:0.28
Consensus pattern (78 bp):
ATAAAACTGGGGTTGGAGTATCCCCTCAGAAATAACGGGGTTGGAGTATCCCGATTGTGGAAAAT
TGGTGTTTTGGAA
Found at i:809334 original size:92 final size:93
Alignment explanation
Indices: 809197--809366 Score: 247
Period size: 92 Copynumber: 1.8 Consensus size: 93
809187 TGGGTCATGC
* *
809197 CCTTGCCCTAAGGAAACGAAGCTTTTGTGATGCATCAATACCATCTAGTGGTTGAATGAACAG-G
1 CCTTGCCCTAAGAAAACGAAGCTTTAGTGATGCATCAATACCATCTAGTGGTTGAATGAA-AGAG
809261 ATATGATTGGGAATGTGTGGTCAAAATAT
65 ATATGATTGGGAATGTGTGGTCAAAATAT
* * * *
809290 CCTTGCCCTAAGAAAATC-AAGC-TTAGTGATGCATCAATAGCATCTATTGGTTGGATGAAGGAG
1 CCTTGCCCTAAGAAAA-CGAAGCTTTAGTGATGCATCAATACCATCTAGTGGTTGAATGAAAGAG
809353 ATATGATTGGGAAT
65 ATATGATTGGGAAT
809367 ATGTAGTTGC
Statistics
Matches: 69, Mismatches: 6, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
91 1 0.01
92 48 0.70
93 19 0.28
94 1 0.01
ACGTcount: A:0.32, C:0.15, G:0.25, T:0.29
Consensus pattern (93 bp):
CCTTGCCCTAAGAAAACGAAGCTTTAGTGATGCATCAATACCATCTAGTGGTTGAATGAAAGAGA
TATGATTGGGAATGTGTGGTCAAAATAT
Found at i:815284 original size:156 final size:158
Alignment explanation
Indices: 815068--815384 Score: 444
Period size: 157 Copynumber: 2.0 Consensus size: 158
815058 ATGTAAAAGT
* *
815068 ACCCAATACCCCTAAAGGACTTAACAAGGATTATAGATGGGATGAACCTATCCTAAATACCCATC
1 ACCCAATACCCCTAAAGGACTTAACAAGGAATATAGAGGGGATGAACCTATCCTAAATACCCA-C
* *
815133 -TTCGGCATAAAAATGGACCC-AGTGACAACCTA-GACTCAGTTTCGTCGGAAATTTATTGAGAT
65 ATTCGACATAAAAATGGACCCGA-TGACAACCTAGGACTCAGTTTCGTAGGAAATTTATTGAGAT
* * * *
815195 GTCCTTAAGATCTACCATTAACATCGAAGC
129 GCCCGTAAGAGCTACCATTAACATAGAAGC
* *
815225 ACCCAATACCCTTAAAGGACTTAA-ACGGAATATAGAGGGGATGAACCTATCCTAAATACCCACA
1 ACCCAATACCCCTAAAGGACTTAACAAGGAATATAGAGGGGATGAACCTATCCTAAATACCCACA
* * * *
815289 TTCGATATAAAAATGGGCCCGATGACAACCTAGGTCTGAGTTTCGTAGGAAATTTATTGAGATGC
66 TTCGACATAAAAATGGACCCGATGACAACCTAGGACTCAGTTTCGTAGGAAATTTATTGAGATGC
* *
815354 CCGTAAGAGCTACCATTGATATAGAAGC
131 CCGTAAGAGCTACCATTAACATAGAAGC
815382 ACC
1 ACC
815385 TGGAGATCCT
Statistics
Matches: 141, Mismatches: 16, Indels: 6
0.87 0.10 0.04
Matches are distributed among these distances:
155 1 0.01
156 62 0.44
157 78 0.55
ACGTcount: A:0.35, C:0.22, G:0.18, T:0.24
Consensus pattern (158 bp):
ACCCAATACCCCTAAAGGACTTAACAAGGAATATAGAGGGGATGAACCTATCCTAAATACCCACA
TTCGACATAAAAATGGACCCGATGACAACCTAGGACTCAGTTTCGTAGGAAATTTATTGAGATGC
CCGTAAGAGCTACCATTAACATAGAAGC
Found at i:816604 original size:51 final size:51
Alignment explanation
Indices: 816528--816674 Score: 231
Period size: 51 Copynumber: 2.9 Consensus size: 51
816518 AAAAGTCACA
816528 TTTTTACCCAGATGTATCGATACATTTTTCAATGTATCGATACATTCTGTC
1 TTTTTACCCAGATGTATCGATACATTTTTCAATGTATCGATACATTCTGTC
* * * *
816579 TTTTTACCCAAATGTATCAATACATTCTTCAATGTATCGATACATTCTGTG
1 TTTTTACCCAGATGTATCGATACATTTTTCAATGTATCGATACATTCTGTC
* * *
816630 TTTTTTCCTAGATGTATTGATACATTTTTCAATGTATCGATACAT
1 TTTTTACCCAGATGTATCGATACATTTTTCAATGTATCGATACAT
816675 CTAGTTAAAA
Statistics
Matches: 86, Mismatches: 10, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
51 86 1.00
ACGTcount: A:0.27, C:0.18, G:0.11, T:0.44
Consensus pattern (51 bp):
TTTTTACCCAGATGTATCGATACATTTTTCAATGTATCGATACATTCTGTC
Found at i:816614 original size:20 final size:20
Alignment explanation
Indices: 816589--816626 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
816579 TTTTTACCCA
816589 AATGTATCAATACATTCTTC
1 AATGTATCAATACATTCTTC
*
816609 AATGTATCGATACATTCT
1 AATGTATCAATACATTCT
816627 GTGTTTTTTC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.34, C:0.18, G:0.08, T:0.39
Consensus pattern (20 bp):
AATGTATCAATACATTCTTC
Found at i:819219 original size:78 final size:78
Alignment explanation
Indices: 819109--819314 Score: 243
Period size: 78 Copynumber: 2.6 Consensus size: 78
819099 GAGATAATAA
* * * * * * *
819109 CGGGGTTGGAGTGTTCCCTTGAAAATAACGGGGCTGGAGTATCCCCGGTTGTGAGAAATCGATGA
1 CGGGGTTGGAGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCCCGATTATGAGAAATCAAT-A
*
819174 -TTAGAAAAAAAAT
65 TTTAGAAAAAAAAC
* *
819187 CGGGATTGGAGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCCCAATTATGAGAAATCAATAT
1 CGGGGTTGGAGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCCCGATTATGAGAAATCAATA-
* * * *
819252 TTTGGGAATAAAGC
65 TTTAGAAAAAAAAC
* *
819266 CGGGGTTGGAGTATCCCCTCGGAAGTAACGGGGTTGGAGTATCCCCGAT
1 CGGGGTTGGAGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCCCGAT
819315 GAAATAACGA
Statistics
Matches: 108, Mismatches: 18, Indels: 3
0.84 0.14 0.02
Matches are distributed among these distances:
77 1 0.01
78 54 0.50
79 53 0.49
ACGTcount: A:0.29, C:0.17, G:0.30, T:0.24
Consensus pattern (78 bp):
CGGGGTTGGAGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCCCGATTATGAGAAATCAATAT
TTAGAAAAAAAAC
Found at i:819306 original size:28 final size:28
Alignment explanation
Indices: 819266--819337 Score: 99
Period size: 28 Copynumber: 2.6 Consensus size: 28
819256 GGAATAAAGC
** *
819266 CGGGGTTGGAGTATCCCCTCGGAAGTAA
1 CGGGGTTGGAGTATCCCCGAGGAAATAA
*
819294 CGGGGTTGGAGTATCCCCGATGAAATAA
1 CGGGGTTGGAGTATCCCCGAGGAAATAA
*
819322 CGAGGTTGGAGTATCC
1 CGGGGTTGGAGTATCC
819338 TCGACTGTGA
Statistics
Matches: 39, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 39 1.00
ACGTcount: A:0.24, C:0.19, G:0.35, T:0.22
Consensus pattern (28 bp):
CGGGGTTGGAGTATCCCCGAGGAAATAA
Found at i:819649 original size:54 final size:51
Alignment explanation
Indices: 819588--819718 Score: 156
Period size: 51 Copynumber: 2.5 Consensus size: 51
819578 GATCAACGAG
* * *
819588 GTTGGAGTATCCCCGATTGTGAAGAAATTGGTGTTTTTTGGAAATAAAATCGGA
1 GTTGGAGTATCCCCGATTGTG-AGAAATTAGTG--TCTTGAAAATAAAATCGGA
*
819642 GTTGGAGTATCCCCGATTAT-AGAAAATTAGTGTCTTGAAAATAAAATCGGA
1 GTTGGAGTATCCCCGATTGTGAG-AAATTAGTGTCTTGAAAATAAAATCGGA
* *
819693 GTTGGAATATCCCTGATTGTGGAGAA
1 GTTGGAGTATCCCCGATTGT-GAGAA
819719 TTGAGAAACT
Statistics
Matches: 67, Mismatches: 7, Indels: 8
0.82 0.09 0.10
Matches are distributed among these distances:
51 34 0.51
52 4 0.06
53 10 0.15
54 19 0.28
ACGTcount: A:0.32, C:0.11, G:0.26, T:0.31
Consensus pattern (51 bp):
GTTGGAGTATCCCCGATTGTGAGAAATTAGTGTCTTGAAAATAAAATCGGA
Found at i:819697 original size:51 final size:53
Alignment explanation
Indices: 819326--819710 Score: 165
Period size: 52 Copynumber: 7.3 Consensus size: 53
819316 AAATAACGAG
* * * * * *
819326 GTTGGAGTATCCTCGACTGTGAA-AAATTGGTATTCTTGGAAATAAAATCGGA
1 GTTGGAGTATCCCCGATTATGAAGAAATTAGTGTTCTTGAAAATAAAATCGGA
* ** * *
819378 GTTGGAGTATCCCCGATTA--AAGGAAAATTGGTGTT-TCAAAAATAAAACCGGG
1 GTTGGAGTATCCCCGATTATGAA-G-AAATTAGTGTTCTTGAAAATAAAATCGGA
* * *
819430 GTTGGAGTATCCCCGATTGTGGAA-AAATTAGTGTT-TT-AGCAATAAAACCGG-
1 GTTGGAGTATCCCCGATTAT-GAAGAAATTAGTGTTCTTGA-AAATAAAATCGGA
* * * * * * *
819481 GATTGGAATATCCCCGATTATGAA-AAATCAATATT-TTGGAAATAAAGTCGGG
1 G-TTGGAGTATCCCCGATTATGAAGAAATTAGTGTTCTTGAAAATAAAATCGGA
* * ** *** * * ** ** *
819533 GTTGGGGTATCCCCTCAAAAAT-AACGGGGTTGGAGTATCCCCGATGAT-CAA-C-GA
1 GTTGGAGTAT-CCC-CGATTATGAA-GAAATT--AGTGTTCTTGAAAATAAAATCGGA
* * * *
819587 GGTTGGAGTATCCCCGATTGTGAAGAAATTGGTGTTTTTTGGAAATAAAATCGGA
1 -GTTGGAGTATCCCCGATTATGAAGAAATTAGTG-TTCTTGAAAATAAAATCGGA
819642 GTTGGAGTATCCCCGATTAT--AGAAAATTAGTG-TCTTGAAAATAAAATCGGA
1 GTTGGAGTATCCCCGATTATGAAG-AAATTAGTGTTCTTGAAAATAAAATCGGA
* *
819693 GTTGGAATATCCCTGATT
1 GTTGGAGTATCCCCGATT
819711 GTGGAGAATT
Statistics
Matches: 244, Mismatches: 65, Indels: 49
0.68 0.18 0.14
Matches are distributed among these distances:
50 2 0.01
51 66 0.27
52 97 0.40
53 30 0.12
54 27 0.11
55 14 0.06
56 5 0.02
57 3 0.01
ACGTcount: A:0.33, C:0.14, G:0.25, T:0.29
Consensus pattern (53 bp):
GTTGGAGTATCCCCGATTATGAAGAAATTAGTGTTCTTGAAAATAAAATCGGA
Found at i:819713 original size:263 final size:262
Alignment explanation
Indices: 819215--819715 Score: 747
Period size: 263 Copynumber: 1.9 Consensus size: 262
819205 TCGAAAATAA
* * * *
819215 CGGGGTTGGAGTATCCCCAATTATGAGAAATCAATATTTTGGGAATAAAGCCGGGGTTGGAGTAT
1 CGGGATTGGAATATCCCCAATTATGAAAAATCAATATTTTGGAAATAAAGCCGGGGTTGGAGTAT
** * *
819280 CCCCTCGGAAGTAACGGGGTTGGAGTATCCCCGATGAAATAACGAGGTTGGAGTATCCTCGACTG
66 CCCCTCAAAAATAACGGGGTTGGAGTATCCCCGATG-AATAACGAGGTTGGAGTATCCCCGACTG
*
819345 TGAAAAATTGGTATTCTTGGAAATAAAATCGGAGTTGGAGTATCCCCGATTAAAGGAAAATTGGT
130 TGAAAAATTGGTATTCTTGGAAATAAAATCGGAGTTGGAGTATCCCCGATTAAAGGAAAATTAGT
* *
819410 GTTTCAAAAATAAAACCGGGGTTGGAGTATCCCCGATTGTGGAAAAATTAGTGTTTTAGCAATAA
195 GTTTCAAAAATAAAACCGGAGTTGGAATATCCCCGATTGTGGAAAAATTAGTGTTTTAGCAATAA
819475 AAC
260 AAC
* * *
819478 CGGGATTGGAATATCCCCGATTATGAAAAATCAATATTTTGGAAATAAAGTCGGGGTTGGGGTAT
1 CGGGATTGGAATATCCCCAATTATGAAAAATCAATATTTTGGAAATAAAGCCGGGGTTGGAGTAT
*
819543 CCCCTCAAAAATAACGGGGTTGGAGTATCCCCGATG-ATCAACGAGGTTGGAGTATCCCCGATTG
66 CCCCTCAAAAATAACGGGGTTGGAGTATCCCCGATGAAT-AACGAGGTTGGAGTATCCCCGACTG
* * *
819607 TGAAGAAATTGGTGTTTTTTGGAAATAAAATCGGAGTTGGAGTATCCCCGATTATA-GAAAATTA
130 TGAA-AAATTGGT-ATTCTTGGAAATAAAATCGGAGTTGGAGTATCCCCGATTAAAGGAAAATTA
* * *
819671 GTGTCTT-GAAAATAAAATCGGAGTTGGAATATCCCTGATTGTGGA
193 GTGT-TTCAAAAATAAAACCGGAGTTGGAATATCCCCGATTGTGGA
819716 GAATTGAGAA
Statistics
Matches: 213, Mismatches: 21, Indels: 8
0.88 0.09 0.03
Matches are distributed among these distances:
261 2 0.01
262 27 0.13
263 143 0.67
264 41 0.19
ACGTcount: A:0.32, C:0.14, G:0.27, T:0.28
Consensus pattern (262 bp):
CGGGATTGGAATATCCCCAATTATGAAAAATCAATATTTTGGAAATAAAGCCGGGGTTGGAGTAT
CCCCTCAAAAATAACGGGGTTGGAGTATCCCCGATGAATAACGAGGTTGGAGTATCCCCGACTGT
GAAAAATTGGTATTCTTGGAAATAAAATCGGAGTTGGAGTATCCCCGATTAAAGGAAAATTAGTG
TTTCAAAAATAAAACCGGAGTTGGAATATCCCCGATTGTGGAAAAATTAGTGTTTTAGCAATAAA
AC
Found at i:822099 original size:33 final size:33
Alignment explanation
Indices: 822054--822120 Score: 89
Period size: 33 Copynumber: 2.0 Consensus size: 33
822044 AAAATTTCCA
***
822054 AATGTATCGATACAAAGATCCATGTATCGATAC
1 AATGTATCGATACAAAGAAAAATGTATCGATAC
* *
822087 AATGTATTGATACACAGAAAAATGTATCGATAC
1 AATGTATCGATACAAAGAAAAATGTATCGATAC
822120 A
1 A
822121 TTTCCTTGGC
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
33 29 1.00
ACGTcount: A:0.43, C:0.15, G:0.15, T:0.27
Consensus pattern (33 bp):
AATGTATCGATACAAAGAAAAATGTATCGATAC
Found at i:822164 original size:19 final size:19
Alignment explanation
Indices: 822140--822194 Score: 101
Period size: 19 Copynumber: 2.9 Consensus size: 19
822130 CAGTAGCTAA
*
822140 TTATGTATCGATACAATAC
1 TTATGTATCGATACAAAAC
822159 TTATGTATCGATACAAAAC
1 TTATGTATCGATACAAAAC
822178 TTATGTATCGATACAAA
1 TTATGTATCGATACAAA
822195 TTGTTGAATT
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
19 35 1.00
ACGTcount: A:0.40, C:0.15, G:0.11, T:0.35
Consensus pattern (19 bp):
TTATGTATCGATACAAAAC
Found at i:822274 original size:21 final size:22
Alignment explanation
Indices: 822250--822306 Score: 100
Period size: 21 Copynumber: 2.7 Consensus size: 22
822240 CATTTGTAGG
822250 ATGTATCGATACATTCC-ACAA
1 ATGTATCGATACATTCCTACAA
822271 ATGTATCGATACA-TCCTACAA
1 ATGTATCGATACATTCCTACAA
822292 ATGTATCGATACATT
1 ATGTATCGATACATT
822307 TGGATAATTT
Statistics
Matches: 34, Mismatches: 0, Indels: 3
0.92 0.00 0.08
Matches are distributed among these distances:
20 3 0.09
21 30 0.88
22 1 0.03
ACGTcount: A:0.37, C:0.21, G:0.11, T:0.32
Consensus pattern (22 bp):
ATGTATCGATACATTCCTACAA
Found at i:822337 original size:15 final size:14
Alignment explanation
Indices: 822314--822349 Score: 56
Period size: 14 Copynumber: 2.6 Consensus size: 14
822304 ATTTGGATAA
822314 TTTTTTTTTTT-AT
1 TTTTTTTTTTTAAT
822327 TTTTATTTTTTTAAT
1 TTTT-TTTTTTTAAT
822342 TTTTTTTT
1 TTTTTTTT
822350 CAAACACTCT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
13 4 0.19
14 11 0.52
15 6 0.29
ACGTcount: A:0.11, C:0.00, G:0.00, T:0.89
Consensus pattern (14 bp):
TTTTTTTTTTTAAT
Found at i:826592 original size:85 final size:84
Alignment explanation
Indices: 826384--826601 Score: 314
Period size: 83 Copynumber: 2.6 Consensus size: 84
826374 TATTTCAGAA
* * * *
826384 TAAAAATGGGGTTGGAGTATCCCTTCGAAAATAATAAGGTTGGAGTATCACTGATAGTAAAAAAA
1 TAAAAAAGGGGTTGGAGTATCCCTTCGAAAATAATAGGGTTGGAGTATCCCTAATAGTAAAAAAA
826449 AATTCAATGCTTTTGGAAG
66 AATTCAATGCTTTTGGAAG
*
826468 T-AAAAAGGGGTTAGAGTATCCCTTCGAAAATAATAGGGTTGGAGTATCCCTAATAGTAAAAAAA
1 TAAAAAAGGGGTTGGAGTATCCCTTCGAAAATAATAGGGTTGGAGTATCCCTAATAGTAAAAAAA
*
826532 AATTTCAATGCTTTTGGACG
66 AA-TTCAATGCTTTTGGAAG
* * * *
826552 TAAAAAAGGGGTTGGAGTATCTCC-TCGAAAATGATGGGGTTAGATTATCC
1 TAAAAAAGGGGTTGGAGTATC-CCTTCGAAAATAATAGGGTTGGAGTATCC
826602 TCGATGGTGA
Statistics
Matches: 120, Mismatches: 11, Indels: 5
0.88 0.08 0.04
Matches are distributed among these distances:
83 60 0.50
84 18 0.15
85 40 0.33
86 2 0.02
ACGTcount: A:0.37, C:0.11, G:0.23, T:0.28
Consensus pattern (84 bp):
TAAAAAAGGGGTTGGAGTATCCCTTCGAAAATAATAGGGTTGGAGTATCCCTAATAGTAAAAAAA
AATTCAATGCTTTTGGAAG
Found at i:829288 original size:35 final size:34
Alignment explanation
Indices: 829234--829299 Score: 105
Period size: 35 Copynumber: 1.9 Consensus size: 34
829224 CCTTACAATA
*
829234 CTATCTTTTCGAAGCCTAAGATAGAACCTCTTCC
1 CTATCTTTTCAAAGCCTAAGATAGAACCTCTTCC
*
829268 CTATCTTTTTCAAAGGCTAAGATAGAACCTCT
1 CTATC-TTTTCAAAGCCTAAGATAGAACCTCT
829300 CAATTACTTT
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
34 5 0.17
35 24 0.83
ACGTcount: A:0.29, C:0.26, G:0.12, T:0.33
Consensus pattern (34 bp):
CTATCTTTTCAAAGCCTAAGATAGAACCTCTTCC
Found at i:830988 original size:15 final size:15
Alignment explanation
Indices: 830967--831010 Score: 56
Period size: 15 Copynumber: 3.0 Consensus size: 15
830957 TTTCCTTTCC
830967 TTCTCTTTTTCTTTT
1 TTCTCTTTTTCTTTT
*
830982 CTT-TCTTTCTCTTTT
1 -TTCTCTTTTTCTTTT
830997 TTCTCTTTTT-TTTT
1 TTCTCTTTTTCTTTT
831011 AGCTAATCAA
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
14 6 0.24
15 17 0.68
16 2 0.08
ACGTcount: A:0.00, C:0.20, G:0.00, T:0.80
Consensus pattern (15 bp):
TTCTCTTTTTCTTTT
Found at i:830996 original size:21 final size:21
Alignment explanation
Indices: 830946--830997 Score: 77
Period size: 21 Copynumber: 2.5 Consensus size: 21
830936 CTCTGTTTTA
*
830946 TTCTCTTTATCTTTCCTTTCC
1 TTCTCTTTTTCTTTCCTTTCC
* *
830967 TTCTCTTTTTCTTTTCTTTCT
1 TTCTCTTTTTCTTTCCTTTCC
830988 TTCTCTTTTT
1 TTCTCTTTTT
830998 TCTCTTTTTT
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.02, C:0.27, G:0.00, T:0.71
Consensus pattern (21 bp):
TTCTCTTTTTCTTTCCTTTCC
Found at i:831746 original size:166 final size:165
Alignment explanation
Indices: 831489--831793 Score: 361
Period size: 166 Copynumber: 1.8 Consensus size: 165
831479 AAATAGGAAA
** *
831489 ATTTTTGAAAACTGATTTAATGAATTAAATAATAATGTTTGATAAATTTTAAAAATTAAAAACCA
1 ATTTTTGAAAACTGATTTAAAAAATTAAATAATAATATTTGATAAATTTTAAAAATTAAAAACCA
* * * *
831554 AGAAAAATCCCTCTGAAAACATTTACGGA-GTAGAAAATTAC-ATATTTTGAAAACAAGA-GAAT
66 AGAAAAATCCCTCCGAAAAAATTTAC-GACATAGAAAACT-CTATATTTT-AAAACAAGAGGAAT
*
831616 TT-TAAAGAAAAAATGAAAAACTCATGAAAATGAATGG
128 TTGAAAAGAAAAAATGAAAAACTCATGAAAATGAATGG
* **** *
831653 ATTTTTGAAAACTGATTTAACAAAAATTAAATAATAATATTTGATGAATTTTAAAAATTTTGGAT
1 ATTTTTGAAAACTGATTT-A-AAAAATTAAATAATAATATTTGATAAATTTTAAAAATTAAAAAC
* *
831718 CAATG-GAAAT-CCTCCCGAAAAAATTTACGACATAGAAAACTCTGTATTTTAAAACAAGAGGAA
64 CAA-GAAAAATCCCT-CCGAAAAAATTTACGACATAGAAAACTCTATATTTTAAAACAAGAGGAA
831781 TTTGAAAAGAAAA
127 TTTGAAAAGAAAA
831794 TTAACAAGTC
Statistics
Matches: 117, Mismatches: 16, Indels: 13
0.80 0.11 0.09
Matches are distributed among these distances:
164 18 0.15
165 16 0.14
166 74 0.63
167 9 0.08
ACGTcount: A:0.49, C:0.09, G:0.12, T:0.30
Consensus pattern (165 bp):
ATTTTTGAAAACTGATTTAAAAAATTAAATAATAATATTTGATAAATTTTAAAAATTAAAAACCA
AGAAAAATCCCTCCGAAAAAATTTACGACATAGAAAACTCTATATTTTAAAACAAGAGGAATTTG
AAAAGAAAAAATGAAAAACTCATGAAAATGAATGG
Found at i:832031 original size:29 final size:29
Alignment explanation
Indices: 831994--832049 Score: 69
Period size: 29 Copynumber: 1.9 Consensus size: 29
831984 ACCTTTTTTT
**
831994 AAATAAAA-TATTGATTTTCAAAATAAAGA
1 AAATAAAATTATCAATTTT-AAAATAAAGA
*
832023 AAATGAAATTATCAATTTTAAAATAAA
1 AAATAAAATTATCAATTTTAAAATAAA
832050 TTTAAAAGAA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
29 15 0.65
30 8 0.35
ACGTcount: A:0.59, C:0.04, G:0.05, T:0.32
Consensus pattern (29 bp):
AAATAAAATTATCAATTTTAAAATAAAGA
Found at i:832061 original size:15 final size:14
Alignment explanation
Indices: 832042--832076 Score: 52
Period size: 15 Copynumber: 2.4 Consensus size: 14
832032 TATCAATTTT
*
832042 AAAATAAATTTAAA
1 AAAATAAAATTAAA
832056 AGAAATAAAATTAAA
1 A-AAATAAAATTAAA
832071 AAAATA
1 AAAATA
832077 TGATTTTGTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
14 6 0.32
15 13 0.68
ACGTcount: A:0.74, C:0.00, G:0.03, T:0.23
Consensus pattern (14 bp):
AAAATAAAATTAAA
Found at i:838402 original size:30 final size:30
Alignment explanation
Indices: 838363--838633 Score: 255
Period size: 30 Copynumber: 9.1 Consensus size: 30
838353 GTGTCCTCTC
838363 CAAAGTCCACAACTCAGTGGCAACCTTTTT
1 CAAAGTCCACAACTCAGTGGCAACCTTTTT
* * *
838393 CAAAATCCACAACTCAATGGCAACCCTTTT
1 CAAAGTCCACAACTCAGTGGCAACCTTTTT
** *
838423 CAAAGTCCATGACTTAGTGGCAACCTTTTT
1 CAAAGTCCACAACTCAGTGGCAACCTTTTT
* * *
838453 CAAAGTCCACGACTCATTGGTAACCTTTTT
1 CAAAGTCCACAACTCAGTGGCAACCTTTTT
** *
838483 CAAAGTCCATGACTTAGTGGC-ACCTTTTT
1 CAAAGTCCACAACTCAGTGGCAACCTTTTT
* *
838512 CAAAGTCCATAACTCAGTGG--ATCTTTTT
1 CAAAGTCCACAACTCAGTGGCAACCTTTTT
* *** *
838540 TAAAGTCCTTGACTTAGTGGCAACCTTTTT
1 CAAAGTCCACAACTCAGTGGCAACCTTTTT
* * * **
838570 TAAAGTCCACAACTCCGTGG-TACCCCTTT
1 CAAAGTCCACAACTCAGTGGCAACCTTTTT
* *
838599 CAAAGTCCACACAAGTCAGTGACAACC-TTTT
1 CAAAGT-C-CACAACTCAGTGGCAACCTTTTT
838630 CAAA
1 CAAA
838634 AGCCCATACA
Statistics
Matches: 197, Mismatches: 39, Indels: 9
0.80 0.16 0.04
Matches are distributed among these distances:
28 23 0.12
29 37 0.19
30 117 0.59
31 17 0.09
32 3 0.02
ACGTcount: A:0.29, C:0.27, G:0.14, T:0.30
Consensus pattern (30 bp):
CAAAGTCCACAACTCAGTGGCAACCTTTTT
Found at i:838442 original size:60 final size:59
Alignment explanation
Indices: 838363--838607 Score: 305
Period size: 60 Copynumber: 4.2 Consensus size: 59
838353 GTGTCCTCTC
** * * *
838363 CAAAGTCCACAACTCAGTGGCAACCTTTTTCAAAATCCACAACTCAATGGCAACCCTTTT
1 CAAAGTCCATGACTTAGTGGCAACCTTTTTCAAAGTCCACAACTCAGTGG-AACCCTTTT
* * *
838423 CAAAGTCCATGACTTAGTGGCAACCTTTTTCAAAGTCCACGACTCATTGGTAACCTTTTT
1 CAAAGTCCATGACTTAGTGGCAACCTTTTTCAAAGTCCACAACTCAGTGG-AACCCTTTT
* * *
838483 CAAAGTCCATGACTTAGTGGC-ACCTTTTTCAAAGTCCATAACTCAGTGG-ATCTTTTT
1 CAAAGTCCATGACTTAGTGGCAACCTTTTTCAAAGTCCACAACTCAGTGGAACCCTTTT
* * * * * *
838540 TAAAGTCCTTGACTTAGTGGCAACCTTTTTTAAAGTCCACAACTCCGTGGTACCCCTTT
1 CAAAGTCCATGACTTAGTGGCAACCTTTTTCAAAGTCCACAACTCAGTGGAACCCTTTT
838599 CAAAGTCCA
1 CAAAGTCCA
838608 CACAAGTCAG
Statistics
Matches: 161, Mismatches: 22, Indels: 5
0.86 0.12 0.03
Matches are distributed among these distances:
57 26 0.16
58 25 0.16
59 37 0.23
60 73 0.45
ACGTcount: A:0.28, C:0.27, G:0.14, T:0.31
Consensus pattern (59 bp):
CAAAGTCCATGACTTAGTGGCAACCTTTTTCAAAGTCCACAACTCAGTGGAACCCTTTT
Found at i:838720 original size:66 final size:65
Alignment explanation
Indices: 838596--838814 Score: 200
Period size: 65 Copynumber: 3.4 Consensus size: 65
838586 GTGGTACCCC
* * ** *
838596 TTTC-AAAGTCCACACAAGTCAGTGACAA-CCTTTTCAAAAGCCCATACAAGTTACTGGTAA-TA
1 TTTCAAAAGTCCACACAAGTCGGTG-CAACCCTTTTCAAAAGCCCACACAAGTTGGTGGTAACCA
838658 T
65 T
* * * *
838659 TTTCCAAAAGTCCACACAAGTGGGTCGCAACCCTTTTCAAAAACCTACACAAGTCGGTGGTAACC
1 TTT-CAAAAGTCCACACAAGTCGGT-GCAACCCTTTTCAAAAGCCCACACAAGTTGGTGGTAACC
*
838724 CT
64 AT
* *
838726 TTTCAAAAG-CCTACCCAAGTCGGTGGCAACCC-TTTCTAAAGCCCACACAAGTTGGTGGTAACC
1 TTTCAAAAGTCC-ACACAAGTCGGT-GCAACCCTTTTCAAAAGCCCACACAAGTTGGTGGTAACC
*
838789 -C
64 AT
* *
838790 TCTCAAAAG-CTCACACAAATCGGTG
1 TTTCAAAAGTC-CACACAAGTCGGTG
838815 GCATCTTTTT
Statistics
Matches: 128, Mismatches: 21, Indels: 14
0.79 0.13 0.09
Matches are distributed among these distances:
63 4 0.03
64 20 0.16
65 50 0.39
66 50 0.39
67 4 0.03
ACGTcount: A:0.32, C:0.28, G:0.16, T:0.23
Consensus pattern (65 bp):
TTTCAAAAGTCCACACAAGTCGGTGCAACCCTTTTCAAAAGCCCACACAAGTTGGTGGTAACCAT
Found at i:838777 original size:32 final size:32
Alignment explanation
Indices: 838593--838817 Score: 182
Period size: 33 Copynumber: 7.0 Consensus size: 32
838583 TCCGTGGTAC
* * *
838593 CCCTTTC-AAAGTCCACACAAGTCAGTGACAA
1 CCCTTTCAAAAGCCCACACAAGTCGGTGGCAA
* * *** *
838624 CCTTTTCAAAAGCCCATACAAGTTACTGGTAA
1 CCCTTTCAAAAGCCCACACAAGTCGGTGGCAA
*** * * *
838656 TATTTTCCAAAAGTCCACACAAGTGGGTCGCAA
1 CCCTTT-CAAAAGCCCACACAAGTCGGTGGCAA
* * *
838689 CCCTTTTCAAAAACCTACACAAGTCGGTGGTAA
1 CCC-TTTCAAAAGCCCACACAAGTCGGTGGCAA
* *
838722 CCCTTTTCAAAAGCCTACCCAAGTCGGTGGCAA
1 CCC-TTTCAAAAGCCCACACAAGTCGGTGGCAA
* * *
838755 CCCTTTCTAAAGCCCACACAAGTTGGTGGTAA
1 CCCTTTCAAAAGCCCACACAAGTCGGTGGCAA
* * *
838787 CCCTCTCAAAAGCTCACACAAATCGGTGGCA
1 CCCTTTCAAAAGCCCACACAAGTCGGTGGCA
838818 TCTTTTTCTA
Statistics
Matches: 152, Mismatches: 39, Indels: 5
0.78 0.20 0.03
Matches are distributed among these distances:
31 6 0.04
32 71 0.47
33 72 0.47
34 3 0.02
ACGTcount: A:0.32, C:0.29, G:0.16, T:0.23
Consensus pattern (32 bp):
CCCTTTCAAAAGCCCACACAAGTCGGTGGCAA
Found at i:838902 original size:58 final size:59
Alignment explanation
Indices: 838830--838981 Score: 191
Period size: 59 Copynumber: 2.6 Consensus size: 59
838820 TTTTTCTAGA
* *
838830 CCCAATGTTGTTGGCCTTGAATCAACACATTGGC-TCTTGTC-AAACCTTTTTTCTCAAG
1 CCCAATGTTGTTGGCCTTAAATCAACACATTGGCAT-TTATCAAAACCTTTTTTCTCAAG
* *
838888 CCCAATGTTTTTGGCCTTAAATCAACACATTGGCATTTATCAAAATCTTTTTTCTCAAG
1 CCCAATGTTGTTGGCCTTAAATCAACACATTGGCATTTATCAAAACCTTTTTTCTCAAG
* * * * * *
838947 CCCAATGTCGCTAGCCTTGAATTAGCACATTGGCA
1 CCCAATGTTGTTGGCCTTAAATCAACACATTGGCA
838982 CTCTTTTTAT
Statistics
Matches: 81, Mismatches: 11, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
58 36 0.44
59 45 0.56
ACGTcount: A:0.26, C:0.25, G:0.14, T:0.35
Consensus pattern (59 bp):
CCCAATGTTGTTGGCCTTAAATCAACACATTGGCATTTATCAAAACCTTTTTTCTCAAG
Found at i:839009 original size:52 final size:52
Alignment explanation
Indices: 838948--839390 Score: 259
Period size: 52 Copynumber: 8.7 Consensus size: 52
838938 TTTCTCAAGC
* * *
838948 CCAATGTCGCTAGCCTTGAATTAGCACATTGGCACTCTTTTTATTTTTAAGT
1 CCAATGTCGCTAGCCTTGAATCAGCACATTGGCACTCTTTTCATCTTTAAGT
* * *
839000 CCAATGTCGCT-GCCCTTGAATTAGCACATTGGCACTCTTGTCATCTTTAAGA
1 CCAATGTCGCTAG-CCTTGAATCAGCACATTGGCACTCTTTTCATCTTTAAGT
* * * * * ** * *
839052 CCAATATCGTTGGCCTTGGATCAACATTTTTGCACAT-TTTATCA-CTTTTAAGC
1 CCAATGTCGCTAGCCTTGAATCAGCACATTGGCAC-TCTTT-TCATC-TTTAAGT
* * *
839105 CCAATGTTGCTAGCCTTGAATCAGCAAATTGGCACCTCTTCTCATCTTTAAGT
1 CCAATGTCGCTAGCCTTGAATCAGCACATTGGCA-CTCTTTTCATCTTTAAGT
*** * * *
839158 TTGATGTCGTTGGCCTTGAATCAGCACATT---A------TCATCTTAAAGT
1 CCAATGTCGCTAGCCTTGAATCAGCACATTGGCACTCTTTTCATCTTTAAGT
** * * * * *
839201 CTGATATCACTGGCCTTGAATCAGCATATTGGCAC-CTTTGTAATCTTTAAGT
1 CCAATGTCGCTAGCCTTGAATCAGCACATTGGCACTCTTT-TCATCTTTAAGT
* ** * * *
839253 CTAATGTCATTGGCCTTAAATCAGCACATTGGCACTCTTCTCATCTTTAA-T
1 CCAATGTCGCTAGCCTTGAATCAGCACATTGGCACTCTTTTCATCTTTAAGT
*** * ** *
839304 TTGATATCATTGGCCTTGAATCAGCACATTGGCACTCTTCTT-ATCTTTAAGT
1 CCAATGTCGCTAGCCTTGAATCAGCACATTGGCACTCTT-TTCATCTTTAAGT
* * * * * * *
839356 TCGATATCGTTGGCCTTGAATCTGCATATTGGCAC
1 CCAATGTCGCTAGCCTTGAATCAGCACATTGGCAC
839391 ATCTGCCAAG
Statistics
Matches: 315, Mismatches: 56, Indels: 40
0.77 0.14 0.10
Matches are distributed among these distances:
43 36 0.11
46 1 0.00
50 1 0.00
51 45 0.14
52 156 0.50
53 72 0.23
54 4 0.01
ACGTcount: A:0.24, C:0.23, G:0.16, T:0.37
Consensus pattern (52 bp):
CCAATGTCGCTAGCCTTGAATCAGCACATTGGCACTCTTTTCATCTTTAAGT
Found at i:839387 original size:103 final size:103
Alignment explanation
Indices: 839202--839390 Score: 258
Period size: 103 Copynumber: 1.8 Consensus size: 103
839192 TCTTAAAGTC
* *
839202 TGATATCACTGGCCTTGAATCAGCATATTGGCACCTTTGTAATCTTTAAGTCTAATGTCATTGGC
1 TGATATCACTGGCCTTGAATCAGCACATTGGCACCTTTGTAATCTTTAAGTCTAATATCATTGGC
839267 CTTAAATCAGCACATTGGCACTCTTCTCATCTTTAATT
66 CTTAAATCAGCACATTGGCACTCTTCTCATCTTTAATT
* * *
839305 TGATATCATTGGCCTTGAATCAGCACATTGGCACTCTTCT-T-ATCTTTAAGT-TCGATATCGTT
1 TGATATCACTGGCCTTGAATCAGCACATTGGCAC-CTT-TGTAATCTTTAAGTCT-AATATCATT
* * *
839367 GGCCTTGAATCTGCATATTGGCAC
63 GGCCTTAAATCAGCACATTGGCAC
839391 ATCTGCCAAG
Statistics
Matches: 75, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
102 1 0.01
103 69 0.92
104 4 0.05
105 1 0.01
ACGTcount: A:0.24, C:0.22, G:0.16, T:0.38
Consensus pattern (103 bp):
TGATATCACTGGCCTTGAATCAGCACATTGGCACCTTTGTAATCTTTAAGTCTAATATCATTGGC
CTTAAATCAGCACATTGGCACTCTTCTCATCTTTAATT
Found at i:840023 original size:21 final size:21
Alignment explanation
Indices: 839973--840046 Score: 96
Period size: 21 Copynumber: 3.6 Consensus size: 21
839963 ACAATAGGTG
* *
839973 AATGTATCGATGCATATTTG-
1 AATGTATCGATACATGTTTGA
*
839993 AATATATCGATACATGTTTGA
1 AATGTATCGATACATGTTTGA
* *
840014 AATGTATCGATACTTGTCTGA
1 AATGTATCGATACATGTTTGA
840035 AATGTATCGATA
1 AATGTATCGATA
840047 TAGGATCATG
Statistics
Matches: 47, Mismatches: 6, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
20 17 0.36
21 30 0.64
ACGTcount: A:0.34, C:0.11, G:0.18, T:0.38
Consensus pattern (21 bp):
AATGTATCGATACATGTTTGA
Found at i:840150 original size:30 final size:32
Alignment explanation
Indices: 840107--840177 Score: 85
Period size: 30 Copynumber: 2.3 Consensus size: 32
840097 ATGTTTTCAT
* *
840107 TGTATTGAGACATTCTGGG-T-TTGATCC-AAA
1 TGTATCGATACATTCTGGGTTCTTGA-CCTAAA
*
840137 TGTATCGATACATTTTGGGTTCTTGACCTAAA
1 TGTATCGATACATTCTGGGTTCTTGACCTAAA
840169 TGTATCGAT
1 TGTATCGAT
840178 TCGTTATTCA
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
30 16 0.46
31 3 0.09
32 16 0.46
ACGTcount: A:0.25, C:0.14, G:0.21, T:0.39
Consensus pattern (32 bp):
TGTATCGATACATTCTGGGTTCTTGACCTAAA
Found at i:849801 original size:13 final size:13
Alignment explanation
Indices: 849783--849808 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
849773 ATTTGCCTGC
849783 ATGTATCGATACA
1 ATGTATCGATACA
849796 ATGTATCGATACA
1 ATGTATCGATACA
849809 TTGAATAATG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:855348 original size:13 final size:13
Alignment explanation
Indices: 855307--855359 Score: 55
Period size: 13 Copynumber: 4.5 Consensus size: 13
855297 CCGTTAGAAG
855307 CAATGTATCGATA
1 CAATGTATCGATA
855320 CAA--T-TC-AT-
1 CAATGTATCGATA
855328 C-ATGTATCGATA
1 CAATGTATCGATA
*
855340 CATTGTATCGATA
1 CAATGTATCGATA
855353 CAATGTA
1 CAATGTA
855360 CCATGTATCG
Statistics
Matches: 32, Mismatches: 2, Indels: 12
0.70 0.04 0.26
Matches are distributed among these distances:
7 1 0.03
8 1 0.03
9 3 0.09
10 4 0.12
11 3 0.09
12 1 0.03
13 19 0.59
ACGTcount: A:0.36, C:0.17, G:0.13, T:0.34
Consensus pattern (13 bp):
CAATGTATCGATA
Found at i:855352 original size:33 final size:33
Alignment explanation
Indices: 855310--855372 Score: 101
Period size: 33 Copynumber: 1.9 Consensus size: 33
855300 TTAGAAGCAA
*
855310 TGTATCGATACAAT-TCATCATGTATCGATACAT
1 TGTATCGATACAATGT-ACCATGTATCGATACAT
855343 TGTATCGATACAATGTACCATGTATCGATA
1 TGTATCGATACAATGTACCATGTATCGATA
855373 ACAGTGGTAG
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
33 27 0.96
34 1 0.04
ACGTcount: A:0.33, C:0.17, G:0.14, T:0.35
Consensus pattern (33 bp):
TGTATCGATACAATGTACCATGTATCGATACAT
Found at i:855449 original size:19 final size:18
Alignment explanation
Indices: 855400--855457 Score: 71
Period size: 19 Copynumber: 3.1 Consensus size: 18
855390 ACTGCTAGTT
*
855400 TCATTTATCGATACAATTG
1 TCATGTATCGATACAA-TG
*
855419 TCCATGTCTCGATACAATG
1 T-CATGTATCGATACAATG
855438 ATCATGTATCGATACAATG
1 -TCATGTATCGATACAATG
855457 T
1 T
855458 ATCGATACAA
Statistics
Matches: 34, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
18 1 0.03
19 19 0.56
20 14 0.41
ACGTcount: A:0.31, C:0.19, G:0.14, T:0.36
Consensus pattern (18 bp):
TCATGTATCGATACAATG
Found at i:855459 original size:13 final size:13
Alignment explanation
Indices: 855441--855467 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
855431 TACAATGATC
855441 ATGTATCGATACA
1 ATGTATCGATACA
855454 ATGTATCGATACA
1 ATGTATCGATACA
855467 A
1 A
855468 AGCATAATGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.41, C:0.15, G:0.15, T:0.30
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:855482 original size:33 final size:32
Alignment explanation
Indices: 855422--855486 Score: 94
Period size: 33 Copynumber: 2.0 Consensus size: 32
855412 ACAATTGTCC
* * *
855422 ATGTCTCGATACAATGATCATGTATCGATACA
1 ATGTATCGATACAAAGATAATGTATCGATACA
855454 ATGTATCGATACAAAGCATAATGTATCGATACA
1 ATGTATCGATACAAAG-ATAATGTATCGATACA
855487 TTTGGGTGTG
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
32 14 0.48
33 15 0.52
ACGTcount: A:0.38, C:0.17, G:0.15, T:0.29
Consensus pattern (32 bp):
ATGTATCGATACAAAGATAATGTATCGATACA
Found at i:862514 original size:9 final size:9
Alignment explanation
Indices: 862500--862534 Score: 54
Period size: 9 Copynumber: 3.9 Consensus size: 9
862490 TCTGAGTCAC
862500 CATCATTAT
1 CATCATTAT
862509 CATCATTAT
1 CATCATTAT
862518 CATC-TTCAT
1 CATCATT-AT
862527 CATCATTA
1 CATCATTA
862535 ATGGTTGACT
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
8 2 0.08
9 20 0.83
10 2 0.08
ACGTcount: A:0.31, C:0.26, G:0.00, T:0.43
Consensus pattern (9 bp):
CATCATTAT
Found at i:864127 original size:13 final size:13
Alignment explanation
Indices: 864109--864141 Score: 57
Period size: 13 Copynumber: 2.5 Consensus size: 13
864099 CCGTTAGAAG
864109 CAATGTATCAATA
1 CAATGTATCAATA
*
864122 CAATGTATCGATA
1 CAATGTATCAATA
864135 CAATGTA
1 CAATGTA
864142 CCATGTATCG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.42, C:0.15, G:0.12, T:0.30
Consensus pattern (13 bp):
CAATGTATCAATA
Found at i:864230 original size:19 final size:19
Alignment explanation
Indices: 864185--864241 Score: 87
Period size: 20 Copynumber: 2.9 Consensus size: 19
864175 ACTGCCAGTT
*
864185 TCATGTATCGATACAATTG
1 TCATGTATCGATACAATGG
864204 TCCATGTATCGATACAATGG
1 T-CATGTATCGATACAATGG
*
864224 TCATGTATCAATACAATG
1 TCATGTATCGATACAATG
864242 TATCGATACA
Statistics
Matches: 35, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
19 17 0.49
20 18 0.51
ACGTcount: A:0.33, C:0.18, G:0.16, T:0.33
Consensus pattern (19 bp):
TCATGTATCGATACAATGG
Found at i:870262 original size:20 final size:20
Alignment explanation
Indices: 870237--870312 Score: 80
Period size: 20 Copynumber: 3.8 Consensus size: 20
870227 CAAAACTTAG
*
870237 AATGTATCGATACAATGAGA
1 AATGTATCGATACAATGAAA
* ****
870257 AATGTATCAATACAATTTCT
1 AATGTATCGATACAATGAAA
* *
870277 TATGTATCGATACATTGAAA
1 AATGTATCGATACAATGAAA
870297 AATGTATCGATACAAT
1 AATGTATCGATACAAT
870313 TTTCTTCCAA
Statistics
Matches: 42, Mismatches: 14, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
20 42 1.00
ACGTcount: A:0.42, C:0.12, G:0.13, T:0.33
Consensus pattern (20 bp):
AATGTATCGATACAATGAAA
Found at i:870300 original size:40 final size:40
Alignment explanation
Indices: 870238--870314 Score: 127
Period size: 40 Copynumber: 1.9 Consensus size: 40
870228 AAAACTTAGA
*
870238 ATGTATCGATACAATGAGAAATGTATCAATACAATTTCTT
1 ATGTATCGATACAATGAAAAATGTATCAATACAATTTCTT
* *
870278 ATGTATCGATACATTGAAAAATGTATCGATACAATTT
1 ATGTATCGATACAATGAAAAATGTATCAATACAATTT
870315 TCTTCCAAAA
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 34 1.00
ACGTcount: A:0.40, C:0.12, G:0.13, T:0.35
Consensus pattern (40 bp):
ATGTATCGATACAATGAAAAATGTATCAATACAATTTCTT
Found at i:870381 original size:20 final size:20
Alignment explanation
Indices: 870358--870411 Score: 56
Period size: 20 Copynumber: 2.6 Consensus size: 20
870348 CATTTCAGGC
*
870358 ATGTATCAATACATT-CATTT
1 ATGTATCAATACATTGC-CTT
* *
870378 ATGTGTCGATACATTGCCTT
1 ATGTATCAATACATTGCCTT
870398 ATTGTATCAATACA
1 A-TGTATCAATACA
870412 AATTGTTGAA
Statistics
Matches: 27, Mismatches: 5, Indels: 3
0.77 0.14 0.09
Matches are distributed among these distances:
20 16 0.59
21 11 0.41
ACGTcount: A:0.31, C:0.17, G:0.11, T:0.41
Consensus pattern (20 bp):
ATGTATCAATACATTGCCTT
Found at i:871241 original size:43 final size:43
Alignment explanation
Indices: 871194--871724 Score: 194
Period size: 42 Copynumber: 12.6 Consensus size: 43
871184 GGTTTGAGTT
*
871194 GACGGGCAGACAAAGAGATAGAGATA-TCTCCCGAGTCTAAGCC
1 GACGGGCAGACAAAGAGATAAAGA-AGTCTCCCGAGTCTAAGCC
* * * * *
871237 GACGGGTAGATAAAGTGATAAAGAAGTCTCCTGAGTCTAAGCT
1 GACGGGCAGACAAAGAGATAAAGAAGTCTCCCGAGTCTAAGCC
* * * * * * **
871280 GATGAGTAGACAAAGA-ATGAAGAAGTCTCTCGGGTCTAAGTA
1 GACGGGCAGACAAAGAGATAAAGAAGTCTCCCGAGTCTAAGCC
** * * * * * *
871322 GATAGGTAGATAAAG-GATAAAAAAATCTCCCAAGTCTGA-CC
1 GACGGGCAGACAAAGAGATAAAGAAGTCTCCCGAGTCTAAGCC
* ** * ** * * * *
871363 AATAGGCAAACAAAGAGATGGAGAAATCTCCCAAGTTTAAGCT
1 GACGGGCAGACAAAGAGATAAAGAAGTCTCCCGAGTCTAAGCC
* * * * * **
871406 GACAGGCAGAC-AA-AGATAAAAAAGTCAT-TCGGGTCTGAGTT
1 GACGGGCAGACAAAGAGATAAAGAAGTC-TCCCGAGTCTAAGCC
* * * * **
871447 AATGGGCAGACAAA-AGATAAAGAAGTCTCTCAAGTCTAAGAT
1 GACGGGCAGACAAAGAGATAAAGAAGTCTCCCGAGTCTAAGCC
* * * * * * * *
871489 AACAGGC--A-AATGATGGTAAAGAAGTCTCTCGGGTCTACGAC
1 GACGGGCAGACAAAGA-GATAAAGAAGTCTCCCGAGTCTAAGCC
* * * * ** * *
871530 GATGGGTAAACAAAG-GATAAAAAAGTCTTTCGTGTCTAAGTC
1 GACGGGCAGACAAAGAGATAAAGAAGTCTCCCGAGTCTAAGCC
* * *
871572 GATGGGCAAACGAAG-GATAAAGAAGTCTCCC-AGGTCTAAGCC
1 GACGGGCAGACAAAGAGATAAAGAAGTCTCCCGA-GTCTAAGCC
* * * *
871614 GATGGGCAGACAAAG-GATAAAAAAGTCTCCTG-GTCTAAGCT
1 GACGGGCAGACAAAGAGATAAAGAAGTCTCCCGAGTCTAAGCC
* * * ** * * *
871655 GATGGGTAGATAAAGAGATGGAGAAGTCTCCCTAGTTTAAGCT
1 GACGGGCAGACAAAGAGATAAAGAAGTCTCCCGAGTCTAAGCC
* * * *
871698 AACGAGCAGACAAAGAGGTAGAGAAGT
1 GACGGGCAGACAAAGAGATAAAGAAGT
871725 TTGGAGTGAG
Statistics
Matches: 367, Mismatches: 105, Indels: 32
0.73 0.21 0.06
Matches are distributed among these distances:
39 2 0.01
40 2 0.01
41 82 0.22
42 193 0.53
43 85 0.23
44 3 0.01
ACGTcount: A:0.39, C:0.16, G:0.26, T:0.19
Consensus pattern (43 bp):
GACGGGCAGACAAAGAGATAAAGAAGTCTCCCGAGTCTAAGCC
Found at i:871317 original size:42 final size:42
Alignment explanation
Indices: 870962--871713 Score: 179
Period size: 42 Copynumber: 17.9 Consensus size: 42
870952 AAAAAGATGG
*
870962 AGAAGTCTCTCGGGTCTAAGCTGA-CAGGCAGACAAAGAATAA
1 AGAAGTCTCTCGGGTCTAAGCTGATGA-GCAGACAAAGAATAA
* * * * * *
871004 AGATGTCTC-CTAGGTCTAAGCCGAT-ATGTAAATAAA-AGATAA
1 AGAAGTCTCTC-GGGTCTAAGCTGATGA-GCAGACAAAGA-ATAA
** * * * *
871046 AGAAACCTCTCAGGTCTAAG-TCAATGGGTAGACAAAGAATAA
1 AGAAGTCTCTCGGGTCTAAGCT-GATGAGCAGACAAAGAATAA
* * * * *
871088 AGAAGTTTCTCAGGTCTAAACTAAT-AGGCAAACAAAGAATGAA
1 AGAAGTCTCTCGGGTCTAAGCTGATGA-GCAGACAAAGAAT-AA
* * * *
871131 A-AAGTCTTTCGGGTCTAAGCCGATGGGCAGACGAATG-ATAA
1 AGAAGTCTCTCGGGTCTAAGCTGATGAGCAGAC-AAAGAATAA
* * * * * * * *
871172 AAAAATCTC-CAGGGTTTGAGTTGACGGGCAGACAAAGAGATAG
1 AGAAGTCTCTC-GGGTCTAAGCTGATGAGCAGACAAAGA-ATAA
* * * * * * * *
871215 AGATA-TCTCCCGAGTCTAAGCCGACGGGTAGATAAAGTGATAA
1 AGA-AGTCTCTCGGGTCTAAGCTGATGAGCAGACAAAG-AATAA
* * *
871258 AGAAGTCTC-CTGAGTCTAAGCTGATGAGTAGACAAAGAATGA
1 AGAAGTCTCTC-GGGTCTAAGCTGATGAGCAGACAAAGAATAA
* * *
871300 AGAAGTCTCTCGGGTCTAAG-TAGAT-AGGTAGATAAAGGATAA
1 AGAAGTCTCTCGGGTCTAAGCT-GATGA-GCAGACAAAGAATAA
* * * ** * ** * **
871342 AAAAATCTCCCAAGTCTGA-CCAAT-AGGCAAACAAAGAGATGG
1 AGAAGTCTCTCGGGTCTAAGCTGATGA-GCAGACAAAGA-ATAA
* * ** * *
871384 AGAAATCTCCCAAGTTTAAGCTGA-CAGGCAGACAAAG-ATAA
1 AGAAGTCTCTCGGGTCTAAGCTGATGA-GCAGACAAAGAATAA
* * * * *
871425 AAAAGTCAT-TCGGGTCTGAGTTAATGGGCAGACAAA-AGATAA
1 AGAAGTC-TCTCGGGTCTAAGCTGATGAGCAGACAAAGA-ATAA
** * * *
871467 AGAAGTCTCTCAAGTCTAA---GAT-AACAGGCAAATGATGGTAA
1 AGAAGTCTCTCGGGTCTAAGCTGATGAGCAGACAAA-GA--ATAA
* * * * *
871508 AGAAGTCTCTCGGGTCTACGAC-GATGGGTAAACAAAGGATAA
1 AGAAGTCTCTCGGGTCTAAG-CTGATGAGCAGACAAAGAATAA
* * * * * * *
871550 AAAAGTCTTTCGTGTCTAAG-TCGATGGGCAAACGAAGGATAA
1 AGAAGTCTCTCGGGTCTAAGCT-GATGAGCAGACAAAGAATAA
* * * * *
871592 AGAAGTCTCCCAGGTCTAAGCCGATGGGCAGACAAAGGATAA
1 AGAAGTCTCTCGGGTCTAAGCTGATGAGCAGACAAAGAATAA
* * * * * **
871634 AAAAGTCTC-CTGGTCTAAGCTGATGGGTAGATAAAGAGATGG
1 AGAAGTCTCTCGGGTCTAAGCTGATGAGCAGACAAAGA-ATAA
* ** * * *
871676 AGAAGTCTCCCTAGTTTAAGCTAACGAGCAGACAAAGA
1 AGAAGTCTCTCGGGTCTAAGCTGATGAGCAGACAAAGA
871714 GGTAGAGAAG
Statistics
Matches: 523, Mismatches: 142, Indels: 89
0.69 0.19 0.12
Matches are distributed among these distances:
38 7 0.01
39 2 0.00
40 1 0.00
41 90 0.17
42 308 0.59
43 104 0.20
44 6 0.01
45 5 0.01
ACGTcount: A:0.39, C:0.16, G:0.25, T:0.20
Consensus pattern (42 bp):
AGAAGTCTCTCGGGTCTAAGCTGATGAGCAGACAAAGAATAA
Found at i:871535 original size:83 final size:84
Alignment explanation
Indices: 871448--871642 Score: 223
Period size: 84 Copynumber: 2.3 Consensus size: 84
871438 GTCTGAGTTA
* * * *
871448 ATGGGCAGACAAAAGATAAAGAAGTCTCTCAAGTCTAAGAT-AACAGGCAAATGATGG-TAAAGA
1 ATGGGCAGACAAAGGATAAAAAAGTCTCTCAAGTCTAAG-TCAACAGGCAAACGAAGGATAAAGA
* * *
871511 AGTCTCTCGGGTCTACGACG
65 AGTCTCCCAGGTCTAAGACG
* * * ** * **
871531 ATGGGTAAACAAAGGATAAAAAAGTCTTTCGTGTCTAAGTCGATGGGCAAACGAAGGATAAAGAA
1 ATGGGCAGACAAAGGATAAAAAAGTCTCTCAAGTCTAAGTCAACAGGCAAACGAAGGATAAAGAA
*
871596 GTCTCCCAGGTCTAAGCCG
66 GTCTCCCAGGTCTAAGACG
871615 ATGGGCAGACAAAGGATAAAAAAGTCTC
1 ATGGGCAGACAAAGGATAAAAAAGTCTC
871643 CTGGTCTAAG
Statistics
Matches: 91, Mismatches: 19, Indels: 3
0.81 0.17 0.03
Matches are distributed among these distances:
82 1 0.01
83 43 0.47
84 47 0.52
ACGTcount: A:0.39, C:0.16, G:0.26, T:0.19
Consensus pattern (84 bp):
ATGGGCAGACAAAGGATAAAAAAGTCTCTCAAGTCTAAGTCAACAGGCAAACGAAGGATAAAGAA
GTCTCCCAGGTCTAAGACG
Found at i:873046 original size:47 final size:47
Alignment explanation
Indices: 872968--873126 Score: 174
Period size: 57 Copynumber: 3.1 Consensus size: 47
872958 TTTTTATCCA
* * * *
872968 ATTTTTTTGTACTTGGATGCCTTTTCAGGTTTTCATCGAAGCATTGTC
1 ATTTTTTAG-ACTTGGATGCCCTTTCGGGTTTTCATCCAAGCATTGTC
873016 ATTTTTTAGACTTGGATGCCCTTTCGGGTTTTCATCCAAGCATTGTC
1 ATTTTTTAGACTTGGATGCCCTTTCGGGTTTTCATCCAAGCATTGTC
*
873063 ATTTTTTATTTTGTTTTCGACTTGGATGCTCTTTCGGGTTTTCATCCAAGCATTGTC
1 ATTTTTTA----------GACTTGGATGCCCTTTCGGGTTTTCATCCAAGCATTGTC
873120 ATTTTTT
1 ATTTTTT
873127 TCTTTCTTTC
Statistics
Matches: 96, Mismatches: 5, Indels: 11
0.86 0.04 0.10
Matches are distributed among these distances:
47 43 0.45
48 8 0.08
57 45 0.47
ACGTcount: A:0.16, C:0.18, G:0.18, T:0.49
Consensus pattern (47 bp):
ATTTTTTAGACTTGGATGCCCTTTCGGGTTTTCATCCAAGCATTGTC
Found at i:873087 original size:57 final size:57
Alignment explanation
Indices: 873019--873126 Score: 198
Period size: 57 Copynumber: 1.9 Consensus size: 57
873009 CATTGTCATT
873019 TTTTAGACTTGGATGCCCTTTCGGGTTTTCATCCAAGCATTGTCATTTTTTATTTTG
1 TTTTAGACTTGGATGCCCTTTCGGGTTTTCATCCAAGCATTGTCATTTTTTATTTTG
* *
873076 TTTTCGACTTGGATGCTCTTTCGGGTTTTCATCCAAGCATTGTCATTTTTT
1 TTTTAGACTTGGATGCCCTTTCGGGTTTTCATCCAAGCATTGTCATTTTTT
873127 TCTTTCTTTC
Statistics
Matches: 49, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
57 49 1.00
ACGTcount: A:0.15, C:0.19, G:0.18, T:0.49
Consensus pattern (57 bp):
TTTTAGACTTGGATGCCCTTTCGGGTTTTCATCCAAGCATTGTCATTTTTTATTTTG
Found at i:885080 original size:161 final size:159
Alignment explanation
Indices: 884805--885383 Score: 669
Period size: 161 Copynumber: 3.6 Consensus size: 159
884795 TCAAAAATAT
* * * * * * *
884805 CATTTCGTACCTTAATGAAAACTCAGAAAGATATGAAAAG-TTTTAAAATCCTTTATACCTCTAT
1 CATTTTGTACCTTAATGGAAACCCA-AAAAATACGAAAAGTTTTTGAAATCCTTTATACCCCTAT
*
884869 GGATCCCCATAGGAATATAAAAGATTAAAAAAGATTAATATTTATTTCAATTTTGCAAGTGTTAA
65 GGATCCCCATAGGAATATAAAAGA-TAAAAAAGATTAA-ATTTATTTCAATTATGCAAGTGTTAA
884934 TTTAATTTTATTTATTTATTTTTGAAAAATGG
128 TTTAATTTTATTTATTTATTTTTGAAAAATGG
* * * * *
884966 CATTTTGTACCTTAATAGAAACCCAAACAAATATGAAAAGTTTTTGAATTCTTTTATACCCTTAT
1 CATTTTGTACCTTAATGGAAACCCAAA-AAATACGAAAAGTTTTTGAAATCCTTTATACCCCTAT
* * * * * *
885031 GGATCCCAATAGGAATATAAAAGATTAAAAAGATTAAAGTTTCTTTCAATTGTGTAAGTATTAAT
65 GGATCCCCATAGGAATATAAAAGATAAAAAAGATTAAA-TTTATTTCAATTATGCAAGTGTTAAT
* **
885096 TTTATTTTATTTATTCGTTTTT-AAAAAT-G
129 TTAATTTTATTTATTTATTTTTGAAAAATGG
* * * ** * *
885125 CCTTTTCTTACCTTAATGGAGACATGAAAAGATACGAAAAGTTTTTGAAATCCTTTACACCCCTA
1 CATTTT-GTACCTTAATGGAAAC-CCAAAAAATACGAAAAGTTTTTGAAATCCTTTATACCCCTA
* * * * * **
885190 CGGATCCCCATAGAAATATAAAAGATAAAAAATAATTAATTTTTATTTTAATTATGGGAGTGTTA
64 TGGATCCCCATAGGAATATAAAAGATAAAAAA-GATTAA-ATTTATTTCAATTATGCAAGTGTTA
* *
885255 ATTTAACTTTATTTATTTATTTTTGAAAAATGT
127 ATTTAATTTTATTTATTTATTTTTGAAAAATGG
* * * *
885288 CATTTTATACCTTAATGGAAACCCAAAAAGATACAAAAAGTTTTTGAATTCTTTTATACCCCTAT
1 CATTTTGTACCTTAATGGAAACCCAAAAA-ATACGAAAAGTTTTTGAAATCCTTTATACCCCTAT
885353 GGATCCCCATAGGAATATAAAAGATAAAAAA
65 GGATCCCCATAGGAATATAAAAGATAAAAAA
885384 TAATTAATAT
Statistics
Matches: 348, Mismatches: 60, Indels: 19
0.81 0.14 0.04
Matches are distributed among these distances:
159 6 0.02
160 80 0.23
161 135 0.39
162 122 0.35
163 5 0.01
ACGTcount: A:0.39, C:0.12, G:0.11, T:0.38
Consensus pattern (159 bp):
CATTTTGTACCTTAATGGAAACCCAAAAAATACGAAAAGTTTTTGAAATCCTTTATACCCCTATG
GATCCCCATAGGAATATAAAAGATAAAAAAGATTAAATTTATTTCAATTATGCAAGTGTTAATTT
AATTTTATTTATTTATTTTTGAAAAATGG
Found at i:885329 original size:162 final size:161
Alignment explanation
Indices: 884797--885393 Score: 709
Period size: 162 Copynumber: 3.7 Consensus size: 161
884787 TTTCATTCTC
* * * * * * *
884797 AAAAATATCATTTCGTACCTTAATGAAAACTCAGAAAGATATGAAAAG-TTTTAAAATCCTTTAT
1 AAAAATGTCATTTTGTACCTTAATGGAAACCCAAAAAGATACGAAAAGTTTTTGAAATCCTTTAT
* * *
884861 ACCTCTATGGATCCCCATAGGAATATAAAAGATTAAAAAAGATTAATATTTATTTCAATTTTGCA
66 ACCCCTATGGATCCCCATAGGAATATAAAAGA-TAAAAAAAATTAATATTTATTTCAATTATGCA
884926 AGTGTTAATTTAATTTTATTTATTTATTTTTG
130 AGTGTTAATTTAATTTTATTTATTTATTTTTG
* * * * *
884958 AAAAATGGCATTTTGTACCTTAATAGAAACCCAAACAA-ATATGAAAAGTTTTTGAATTCTTTTA
1 AAAAATGTCATTTTGTACCTTAATGGAAACCCAAA-AAGATACGAAAAGTTTTTGAAATCCTTTA
* * * * * * *
885022 TACCCTTATGGATCCCAATAGGAATATAAAAGATTAAAAAGATTAA-AGTTTCTTTCAATTGTGT
65 TACCCCTATGGATCCCCATAGGAATATAAAAGATAAAAAAAATTAATA-TTTATTTCAATTATGC
* * **
885086 AAGTATTAATTTTATTTTATTTATTCGTTTTT-
129 AAGTGTTAATTTAATTTTATTTATTTATTTTTG
* * * ***
885118 AAAAATG-CCTTTTCTTACCTTAATGGAGACATGAAAAGATACGAAAAGTTTTTGAAATCCTTTA
1 AAAAATGTCATTTT-GTACCTTAATGGAAACCCAAAAAGATACGAAAAGTTTTTGAAATCCTTTA
* * * * * *
885182 CACCCCTACGGATCCCCATAGAAATATAAAAGATAAAAAATAATTAATTTTTATTTTAATTATGG
65 TACCCCTATGGATCCCCATAGGAATATAAAAGATAAAAAA-AATTAATATTTATTTCAATTATGC
* *
885247 GAGTGTTAATTTAACTTTATTTATTTATTTTTG
129 AAGTGTTAATTTAATTTTATTTATTTATTTTTG
* * * *
885280 AAAAATGTCATTTTATACCTTAATGGAAACCCAAAAAGATACAAAAAGTTTTTGAATTCTTTTAT
1 AAAAATGTCATTTTGTACCTTAATGGAAACCCAAAAAGATACGAAAAGTTTTTGAAATCCTTTAT
885345 ACCCCTATGGATCCCCATAGGAATATAAAAGATAAAAAATAATTAATAT
66 ACCCCTATGGATCCCCATAGGAATATAAAAGATAAAAAA-AATTAATAT
885394 GGAAATATCT
Statistics
Matches: 365, Mismatches: 62, Indels: 17
0.82 0.14 0.04
Matches are distributed among these distances:
159 7 0.02
160 80 0.22
161 134 0.37
162 139 0.38
163 5 0.01
ACGTcount: A:0.40, C:0.12, G:0.11, T:0.38
Consensus pattern (161 bp):
AAAAATGTCATTTTGTACCTTAATGGAAACCCAAAAAGATACGAAAAGTTTTTGAAATCCTTTAT
ACCCCTATGGATCCCCATAGGAATATAAAAGATAAAAAAAATTAATATTTATTTCAATTATGCAA
GTGTTAATTTAATTTTATTTATTTATTTTTG
Found at i:886165 original size:13 final size:13
Alignment explanation
Indices: 886147--886185 Score: 53
Period size: 12 Copynumber: 3.0 Consensus size: 13
886137 TCCTTATATT
886147 TTTCTCTTTTTTC
1 TTTCTCTTTTTTC
886160 TTTCTCCTTTTTTC
1 TTTCT-CTTTTTTC
*
886174 -CTCTCTTTTTTC
1 TTTCTCTTTTTTC
886186 AGCTGACCAT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
12 8 0.33
13 8 0.33
14 8 0.33
ACGTcount: A:0.00, C:0.28, G:0.00, T:0.72
Consensus pattern (13 bp):
TTTCTCTTTTTTC
Found at i:887121 original size:162 final size:163
Alignment explanation
Indices: 886811--887122 Score: 443
Period size: 162 Copynumber: 1.9 Consensus size: 163
886801 AATTCGATTT
* *
886811 TTTCAAAAAAGAGGAATTTCAAGGAAAAAATCAAAACCTCATGAAAATGAATTAATTTTTGAAAA
1 TTTCAAAAAAGA-GAATTTCAAGGAAAAAATCAAAAACTCATGAAAATAAATTAATTTTTGAAAA
* * *
886876 CTGATTAATATGAAATAAATAATAATGTTTGATAAATTTTAAAAATTAAAAACCAAGAAAAACCT
65 CTAATTAATATAAAATAAATAATAATATTTGATAAATTTTAAAAATTAAAAACCAAGAAAAACCT
*
886941 CTCCGAAAAAATTTATGAAGTAGAAAACAACGTA
130 CTCCGAAAAAAATTATGAAGTAGAAAACAACGTA
* *
886975 TTTCAAAAAA-A-AATTT-AAGGAAAAAATTTAAAAACTCATGAAAATAAATTAATTTTTGAAAG
1 TTTCAAAAAAGAGAATTTCAAGGAAAAAA-TCAAAAACTCATGAAAATAAATTAATTTTTGAAAA
* * * *
887037 CTAATTTAATATAAAATAAATGATAATATTTGATGAATTTTAAAAATTTAAAAACTAAGAAAAAT
65 CTAA-TTAATATAAAATAAATAATAATATTTGATAAATTTTAAAAA-TTAAAAACCAAGAAAAAC
*
887102 CTC-CCTAAAAAAATTATGAAG
128 CTCTCCGAAAAAAATTATGAAG
887123 AAAATAAGAG
Statistics
Matches: 132, Mismatches: 13, Indels: 8
0.86 0.08 0.05
Matches are distributed among these distances:
160 10 0.08
161 39 0.30
162 53 0.40
163 20 0.15
164 10 0.08
ACGTcount: A:0.54, C:0.08, G:0.09, T:0.29
Consensus pattern (163 bp):
TTTCAAAAAAGAGAATTTCAAGGAAAAAATCAAAAACTCATGAAAATAAATTAATTTTTGAAAAC
TAATTAATATAAAATAAATAATAATATTTGATAAATTTTAAAAATTAAAAACCAAGAAAAACCTC
TCCGAAAAAAATTATGAAGTAGAAAACAACGTA
Found at i:887150 original size:162 final size:161
Alignment explanation
Indices: 886825--887148 Score: 424
Period size: 161 Copynumber: 2.0 Consensus size: 161
886815 AAAAAAGAGG
* * * *
886825 AATTTCAAGGAAAAAATCAAAACCTCATGAAAATGAATTAATTTTTGAAAACTGATTAATATGAA
1 AATTTCAAGGAAAAAATCAAAAACTCATGAAAATAAATTAATTTTTGAAAACTAATTAATATAAA
* *
886890 ATAAATAATAATGTTTGATAAATTTTAAAAATTAAAAACCAAGAAAAACCTCTCCGAAAAAATTT
66 ATAAATAATAATATTTGATAAATTTTAAAAATTAAAAACCAAGAAAAACCTCTCCGAAAAAAATT
* *
886955 ATGAAGTAGAAAACAACGTATTTCAAAAAAA
131 ATGAAGTAGAAAACAACGAATTCCAAAAAAA
* *
886986 AATTT-AAGGAAAAAATTTAAAAACTCATGAAAATAAATTAATTTTTGAAAGCTAATTTAATATA
1 AATTTCAAGGAAAAAA-TCAAAAACTCATGAAAATAAATTAATTTTTGAAAACTAA-TTAATATA
* * * * *
887050 AAATAAATGATAATATTTGATGAATTTTAAAAATTTAAAAACTAAGAAAAATCTC-CCTAAAAAA
64 AAATAAATAATAATATTTGATAAATTTTAAAAA-TTAAAAACCAAGAAAAACCTCTCCGAAAAAA
*
887114 ATTATGAAG-A-AAATA-AGAGGAATTCCAAAAAAA
128 ATTATGAAGTAGAAA-ACA-ACGAATTCCAAAAAAA
887147 AA
1 AA
887149 ATCAGTAACT
Statistics
Matches: 142, Mismatches: 16, Indels: 10
0.85 0.10 0.06
Matches are distributed among these distances:
160 14 0.10
161 56 0.39
162 53 0.37
163 19 0.13
ACGTcount: A:0.55, C:0.08, G:0.09, T:0.28
Consensus pattern (161 bp):
AATTTCAAGGAAAAAATCAAAAACTCATGAAAATAAATTAATTTTTGAAAACTAATTAATATAAA
ATAAATAATAATATTTGATAAATTTTAAAAATTAAAAACCAAGAAAAACCTCTCCGAAAAAAATT
ATGAAGTAGAAAACAACGAATTCCAAAAAAA
Found at i:891066 original size:52 final size:52
Alignment explanation
Indices: 891009--891152 Score: 184
Period size: 52 Copynumber: 2.8 Consensus size: 52
890999 TGCAAAATTG
* * *
891009 CCAACATGTGTCGATACATTGAAGAATGTCTCAATACATTTGGGTCAAAAAC
1 CCAACATGTATCGATACAATGAAGAATGTATCAATACATTTGGGTCAAAAAC
*
891061 CCAACATGTATCGATACAATGAAGAATGTATGAATACATTTGGGTC-AAAAC
1 CCAACATGTATCGATACAATGAAGAATGTATCAATACATTTGGGTCAAAAAC
* * * * *
891112 CTAGA-ATGTATCAATACAATGAAAAATGTATCGATATATTT
1 CCA-ACATGTATCGATACAATGAAGAATGTATCAATACATTT
891153 TCATTCCAAA
Statistics
Matches: 81, Mismatches: 10, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
51 38 0.47
52 43 0.53
ACGTcount: A:0.40, C:0.15, G:0.16, T:0.28
Consensus pattern (52 bp):
CCAACATGTATCGATACAATGAAGAATGTATCAATACATTTGGGTCAAAAAC
Found at i:891598 original size:20 final size:20
Alignment explanation
Indices: 891573--891628 Score: 78
Period size: 20 Copynumber: 2.8 Consensus size: 20
891563 CTGCTAAGGA
891573 AATGTATCGATACATT-ACTC
1 AATGTATCGATACATTGA-TC
891593 AATGTATCGATACATTGATC
1 AATGTATCGATACATTGATC
**
891613 TTTGTATCGATACATT
1 AATGTATCGATACATT
891629 TGGGAATTTC
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
20 32 0.97
21 1 0.03
ACGTcount: A:0.32, C:0.16, G:0.12, T:0.39
Consensus pattern (20 bp):
AATGTATCGATACATTGATC
Found at i:899841 original size:19 final size:19
Alignment explanation
Indices: 899796--899869 Score: 85
Period size: 20 Copynumber: 3.8 Consensus size: 19
899786 ACTGCCAGTT
* *
899796 TCATGTATCGATACATTTA
1 TCATGTATCGATACAATGA
899815 TGCATGTATCGATACAATGA
1 T-CATGTATCGATACAATGA
*
899835 TCATGTATCGATACAAAGCA
1 TCATGTATCGATACAATG-A
* *
899855 TAATGTATTGATACA
1 TCATGTATCGATACA
899870 TCTGGATGTG
Statistics
Matches: 48, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
19 17 0.35
20 31 0.65
ACGTcount: A:0.36, C:0.15, G:0.15, T:0.34
Consensus pattern (19 bp):
TCATGTATCGATACAATGA
Found at i:902692 original size:39 final size:39
Alignment explanation
Indices: 902657--902777 Score: 190
Period size: 39 Copynumber: 3.1 Consensus size: 39
902647 CAAAAACATG
*
902657 AAAAATCACAAAATGACAAGTTTAACCAAATAAAACACC
1 AAAAATCACAAAATCACAAGTTTAACCAAATAAAACACC
902696 AAAAATCACAAGAA-CACAAGTTTAACCAAATAAAACACC
1 AAAAATCACAA-AATCACAAGTTTAACCAAATAAAACACC
* * *
902735 AAAAATCACAAGATTACAAGTTCAACCAAATAAAACACC
1 AAAAATCACAAAATCACAAGTTTAACCAAATAAAACACC
902774 AAAA
1 AAAA
902778 GTGCAACATG
Statistics
Matches: 76, Mismatches: 4, Indels: 4
0.90 0.05 0.05
Matches are distributed among these distances:
38 1 0.01
39 73 0.96
40 2 0.03
ACGTcount: A:0.60, C:0.21, G:0.05, T:0.14
Consensus pattern (39 bp):
AAAAATCACAAAATCACAAGTTTAACCAAATAAAACACC
Found at i:907784 original size:111 final size:111
Alignment explanation
Indices: 907585--907814 Score: 451
Period size: 111 Copynumber: 2.1 Consensus size: 111
907575 TGATGCTCGT
907585 TGGATAAAAATCTTAAGCTTATGTTAATCCTCATTGATTGAGGCTAACATGCTTACTTGAGGGAT
1 TGGA-AAAAATCTTAAGCTTATGTTAATCCTCATTGATTGAGGCTAACATGCTTACTTGAGGGAT
907650 GTTTTGGAAAATCAATTTTCAAATGCAAACAAGCATGCATCTTGACA
65 GTTTTGGAAAATCAATTTTCAAATGCAAACAAGCATGCATCTTGACA
907697 TGGAAAAAATCTTAAGCTTATGTTAATCCTCATTGATTGAGGCTAACATGCTTACTTGAGGGATG
1 TGGAAAAAATCTTAAGCTTATGTTAATCCTCATTGATTGAGGCTAACATGCTTACTTGAGGGATG
907762 TTTTGGAAAATCAATTTTCAAATGCAAACAAGCATGCATCTTGACA
66 TTTTGGAAAATCAATTTTCAAATGCAAACAAGCATGCATCTTGACA
907808 TGGAAAA
1 TGGAAAA
907815 TGTGAATACC
Statistics
Matches: 118, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
111 114 0.97
112 4 0.03
ACGTcount: A:0.35, C:0.15, G:0.18, T:0.32
Consensus pattern (111 bp):
TGGAAAAAATCTTAAGCTTATGTTAATCCTCATTGATTGAGGCTAACATGCTTACTTGAGGGATG
TTTTGGAAAATCAATTTTCAAATGCAAACAAGCATGCATCTTGACA
Found at i:909300 original size:33 final size:33
Alignment explanation
Indices: 909238--909303 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
909228 GCCGTTACAA
*
909238 GCAATGTATCGATACAATTCATCACGTATCGAT
1 GCAATGTATCGATACAATTCACCACGTATCGAT
*
909271 GCAATGTATCGATACAATGT-ACCATGTATCGAT
1 GCAATGTATCGATACAAT-TCACCACGTATCGAT
909304 ACAAATAGTG
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
33 29 0.97
34 1 0.03
ACGTcount: A:0.33, C:0.20, G:0.17, T:0.30
Consensus pattern (33 bp):
GCAATGTATCGATACAATTCACCACGTATCGAT
Found at i:909384 original size:19 final size:20
Alignment explanation
Indices: 909340--909384 Score: 56
Period size: 19 Copynumber: 2.3 Consensus size: 20
909330 CAGTTTCATG
** *
909340 TATCGATACAATTGTCCATG
1 TATCGATACAATTGAACATA
909360 TATCGATACAA-TGAACATA
1 TATCGATACAATTGAACATA
909379 TATCGA
1 TATCGA
909385 GGCAATGTTT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
19 11 0.50
20 11 0.50
ACGTcount: A:0.38, C:0.18, G:0.13, T:0.31
Consensus pattern (20 bp):
TATCGATACAATTGAACATA
Found at i:918117 original size:13 final size:13
Alignment explanation
Indices: 918077--918129 Score: 55
Period size: 13 Copynumber: 4.5 Consensus size: 13
918067 CCATTACAAG
918077 CAATGTATCGATA
1 CAATGTATCGATA
918090 CAA--T-TC-AT-
1 CAATGTATCGATA
918098 C-ATGTATCGATA
1 CAATGTATCGATA
918110 CAATGTATCGATA
1 CAATGTATCGATA
*
918123 TAATGTA
1 CAATGTA
918130 CCATGTATCG
Statistics
Matches: 33, Mismatches: 1, Indels: 12
0.72 0.02 0.26
Matches are distributed among these distances:
7 1 0.03
8 1 0.03
9 3 0.09
10 4 0.12
11 3 0.09
12 1 0.03
13 20 0.61
ACGTcount: A:0.38, C:0.15, G:0.13, T:0.34
Consensus pattern (13 bp):
CAATGTATCGATA
Found at i:918117 original size:33 final size:33
Alignment explanation
Indices: 918077--918145 Score: 104
Period size: 33 Copynumber: 2.1 Consensus size: 33
918067 CCATTACAAG
*
918077 CAATGTATCGATACAAT-TCATCATGTATCGATA
1 CAATGTATCGATACAATGT-ACCATGTATCGATA
*
918110 CAATGTATCGATATAATGTACCATGTATCGATA
1 CAATGTATCGATACAATGTACCATGTATCGATA
918143 CAA
1 CAA
918146 GCAGTGGTAG
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
33 32 0.97
34 1 0.03
ACGTcount: A:0.38, C:0.17, G:0.13, T:0.32
Consensus pattern (33 bp):
CAATGTATCGATACAATGTACCATGTATCGATA
Found at i:918835 original size:20 final size:19
Alignment explanation
Indices: 918810--918883 Score: 85
Period size: 20 Copynumber: 3.7 Consensus size: 19
918800 AAGAGACAAG
918810 ATGTATCGATACATTGAAGA
1 ATGTATCGATACATTGAA-A
* * *
918830 ATGTATCAATACATTCATAC
1 ATGTATCGATACATTGA-AA
918850 ATGTATCGATACATTGAAAA
1 ATGTATCGATACATTG-AAA
*
918870 ATGTATTGATACAT
1 ATGTATCGATACAT
918884 CTGGGTAAAA
Statistics
Matches: 45, Mismatches: 7, Indels: 4
0.80 0.12 0.07
Matches are distributed among these distances:
20 43 0.96
21 2 0.04
ACGTcount: A:0.41, C:0.12, G:0.14, T:0.34
Consensus pattern (19 bp):
ATGTATCGATACATTGAAA
Found at i:918910 original size:51 final size:51
Alignment explanation
Indices: 918850--918996 Score: 240
Period size: 51 Copynumber: 2.9 Consensus size: 51
918840 ACATTCATAC
*
918850 ATGTATCGATACATTGAAAAATGTATTGATACATCTGGGTAAAAAGACAAA
1 ATGTATCGATACATTGAAAAATGTATCGATACATCTGGGTAAAAAGACAAA
* * * *
918901 ATGTATCGATACATTGAAAAACGTATCAATACATCTGGGTAAAAAGATAGA
1 ATGTATCGATACATTGAAAAATGTATCGATACATCTGGGTAAAAAGACAAA
*
918952 ATGTATCGATACATTAAAAAATGTATCGATACATCTGGGTAAAAA
1 ATGTATCGATACATTGAAAAATGTATCGATACATCTGGGTAAAAA
918997 TCTGACTTTT
Statistics
Matches: 88, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
51 88 1.00
ACGTcount: A:0.45, C:0.11, G:0.17, T:0.27
Consensus pattern (51 bp):
ATGTATCGATACATTGAAAAATGTATCGATACATCTGGGTAAAAAGACAAA
Found at i:919947 original size:31 final size:31
Alignment explanation
Indices: 919908--919969 Score: 99
Period size: 32 Copynumber: 2.0 Consensus size: 31
919898 CCAGCGACAT
*
919908 TGGGTTTAGA-AGGGTTGCCACCAACTTGTG
1 TGGGTTTAGAGAAGGTTGCCACCAACTTGTG
919938 TGGGCTTTAGAGAAGGTTGCCACCAACTTGTG
1 TGGG-TTTAGAGAAGGTTGCCACCAACTTGTG
919970 AGCTTTAAAA
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
30 4 0.14
31 6 0.21
32 19 0.66
ACGTcount: A:0.21, C:0.18, G:0.32, T:0.29
Consensus pattern (31 bp):
TGGGTTTAGAGAAGGTTGCCACCAACTTGTG
Found at i:920031 original size:56 final size:57
Alignment explanation
Indices: 919936--920207 Score: 239
Period size: 56 Copynumber: 4.8 Consensus size: 57
919926 CACCAACTTG
* * * ** * * *
919936 TGTGGGCTTTAGAGAAGGTTGCCACCAACTTGTGAGCTTTAAAAGGATGCCACTGATT
1 TGTGGGCTTCA-AAAAGGATGCCACTGACTTGTGGGCTTTAAAAGGGTGCCACTGACT
* *
919994 TGTGGGCTTCAAAAAGG-TGTCACTGACTTGTGGGCTTTAAAAGGGTGCTACTGACT
1 TGTGGGCTTCAAAAAGGATGCCACTGACTTGTGGGCTTTAAAAGGGTGCCACTGACT
* * * *
920050 TGTGGGCTTCGAGAGAA-GTTGCCACCGACTTGTATGGGC-TTAAAGGGGTGCCACTGACT
1 TGTGGGCTTC-A-AAAAGGATGCCACTGACTTG--TGGGCTTTAAAAGGGTGCCACTGACT
** * * * *
920109 TGTGGGCTTTGAGAAGGATGCCACTGACTCGTGGGCTTTGAAAA-TGTGCAACTGACT
1 TGTGGGCTTCAAAAAGGATGCCACTGACTTGTGGGCTTT-AAAAGGGTGCCACTGACT
** * *
920166 TGTGGGCTT-TGAAAGGATGCCACTGACTTGTGGACTCTAAAA
1 TGTGGGCTTCAAAAAGGATGCCACTGACTTGTGGGCTTTAAAA
920208 AAGGTCGTTT
Statistics
Matches: 178, Mismatches: 28, Indels: 19
0.79 0.12 0.08
Matches are distributed among these distances:
55 4 0.02
56 70 0.39
57 33 0.19
58 39 0.22
59 27 0.15
60 5 0.03
ACGTcount: A:0.24, C:0.18, G:0.31, T:0.28
Consensus pattern (57 bp):
TGTGGGCTTCAAAAAGGATGCCACTGACTTGTGGGCTTTAAAAGGGTGCCACTGACT
Found at i:920108 original size:29 final size:28
Alignment explanation
Indices: 919907--920196 Score: 148
Period size: 28 Copynumber: 10.0 Consensus size: 28
919897 GCCAGCGACA
* * **
919907 TTGGGTTTAGAAGGGTTGCCACCAACTTG
1 TTGGGCTTAAAAGGG-TGCCACTGACTTG
* **
919936 TGTGGGCTTTAGAGAAGGTTGCCACCAACTTG
1 T-TGGGC-TTA-A-AAGGGTGCCACTGACTTG
* * *
919968 -TGAGCTTTAAAAGGATGCCACTGATTTG
1 TTGGGC-TTAAAAGGGTGCCACTGACTTG
* *
919996 -TGGGCTTCAAAAAGGTGTCACTGACTTG
1 TTGGGCTT-AAAAGGGTGCCACTGACTTG
*
920024 -TGGGCTTTAAAAGGGTGCTACTGACTTG
1 TTGGGC-TTAAAAGGGTGCCACTGACTTG
* *
920052 -TGGGCTTCGAGAGAA-GTTGCCACCGACTTG
1 TTGGGCTT--A-A-AAGGGTGCCACTGACTTG
*
920082 TATGGGCTTAAAGGGGTGCCACTGACTTG
1 T-TGGGCTTAAAAGGGTGCCACTGACTTG
* * *
920111 -TGGGCTTTGAGAAGGATGCCACTGACTCG
1 TTGGGC-TT-AAAAGGGTGCCACTGACTTG
* *
920140 -TGGGCTTTGAAAA-TGTGCAACTGACTTG
1 TTGGGC-TT-AAAAGGGTGCCACTGACTTG
* *
920168 -TGGGCTTTGAAAGGATGCCACTGACTTG
1 TTGGGC-TTAAAAGGGTGCCACTGACTTG
920196 T
1 T
920197 GGACTCTAAA
Statistics
Matches: 209, Mismatches: 35, Indels: 34
0.75 0.13 0.12
Matches are distributed among these distances:
27 12 0.06
28 95 0.45
29 47 0.22
30 26 0.12
31 5 0.02
32 20 0.10
33 4 0.02
ACGTcount: A:0.22, C:0.18, G:0.31, T:0.29
Consensus pattern (28 bp):
TTGGGCTTAAAAGGGTGCCACTGACTTG
Found at i:920165 original size:116 final size:114
Alignment explanation
Indices: 919936--920174 Score: 295
Period size: 116 Copynumber: 2.1 Consensus size: 114
919926 CACCAACTTG
* *
919936 TGTGGGCTTTAGAGAAGGTTGCCACCAACTTGTGAGCTTTAAAAGGATGCCACTGATTTGTGGGC
1 TGTGGGCTTGAGAGAAGGTTGCCACCAACTTGTGAGCTTTAAAAGGATGCCACTGACTTGTGGGC
* * *
920001 TTCAAAAAGGTGTCACTGACTTGTGGGCTTTAAAAGGGTGCTACTGACT
66 TTCAAAAAGGTGCCACTGACTCGTGGGCTTTAAAAGGGTGCAACTGACT
* * * *
920050 TGTGGGCTTCGAGAGAA-GTTGCCACCGACTTGTATGGGC-TTAAAGGGGTGCCACTGACTTGTG
1 TGTGGGCTT-GAGAGAAGGTTGCCACCAACTTG--TGAGCTTTAAAAGGATGCCACTGACTTGTG
** * *
920113 GGCTTTGAGAAGGATGCCACTGACTCGTGGGCTTTGAAAA-TGTGCAACTGACT
63 GGCTTCAAAAAGG-TGCCACTGACTCGTGGGCTTT-AAAAGGGTGCAACTGACT
920166 TGTGGGCTT
1 TGTGGGCTT
920175 TGAAAGGATG
Statistics
Matches: 107, Mismatches: 13, Indels: 8
0.84 0.10 0.06
Matches are distributed among these distances:
114 23 0.21
115 37 0.35
116 43 0.40
117 4 0.04
ACGTcount: A:0.22, C:0.18, G:0.31, T:0.29
Consensus pattern (114 bp):
TGTGGGCTTGAGAGAAGGTTGCCACCAACTTGTGAGCTTTAAAAGGATGCCACTGACTTGTGGGC
TTCAAAAAGGTGCCACTGACTCGTGGGCTTTAAAAGGGTGCAACTGACT
Found at i:920191 original size:144 final size:146
Alignment explanation
Indices: 919921--920198 Score: 366
Period size: 144 Copynumber: 1.9 Consensus size: 146
919911 GTTTAGAAGG
* *
919921 GTTGCCACCAACTTGTGTGGGCTTTAGAGAAGGTTGCCACCAACTTGTGAGCTTTAAAAGGATGC
1 GTTGCCACCAACTTGTATGGGCTTTAGAGAAGGGTGCCACCAACTTGTGAGCTTTAAAAGGATGC
* * * *
919986 CACTGATTTGTGGGCTTCAAAAAGGTGTCACTGACTTGTGGGCTTTAAAAGGGTGCTACTGACTT
66 CACTGACTCGTGGGCTTCAAAAAGGTGTCACTGACTTGTGGGCTTTAAAAGGATGCCACTGACTT
920051 GTGGGCTTCGAGAGAA
131 GTGGGCTTCGAGAGAA
* * ** * *
920067 GTTGCCACCGACTTGTATGGGC-TTA-A-AGGGGTGCCACTGACTTGTGGGCTTTGAGAAGGATG
1 GTTGCCACCAACTTGTATGGGCTTTAGAGAAGGGTGCCACCAACTTGTGAGCTTT-AAAAGGATG
** * *
920129 CCACTGACTCGTGGGCTTTGAAAATGTG-CAACTGACTTGTGGGCTTTGAAAGGATGCCACTGAC
65 CCACTGACTCGTGGGCTTCAAAAAGGTGTC-ACTGACTTGTGGGCTTTAAAAGGATGCCACTGAC
920193 TTGTGG
129 TTGTGG
920199 ACTCTAAAAA
Statistics
Matches: 114, Mismatches: 16, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
143 22 0.19
144 69 0.61
145 3 0.03
146 20 0.18
ACGTcount: A:0.22, C:0.18, G:0.31, T:0.28
Consensus pattern (146 bp):
GTTGCCACCAACTTGTATGGGCTTTAGAGAAGGGTGCCACCAACTTGTGAGCTTTAAAAGGATGC
CACTGACTCGTGGGCTTCAAAAAGGTGTCACTGACTTGTGGGCTTTAAAAGGATGCCACTGACTT
GTGGGCTTCGAGAGAA
Found at i:920211 original size:116 final size:114
Alignment explanation
Indices: 919936--920206 Score: 268
Period size: 116 Copynumber: 2.4 Consensus size: 114
919926 CACCAACTTG
* * * * * *
919936 TGTGGGCTT-TAGAGAAGGTTGCCACCAACTTG-T-GAGCTTTAAAAGGATGCCACTGATTTGTG
1 TGTGGGCTTCGAGAGAA-GATGCCACCGACTTGATGGA-C-TTAAAGGGGTGCCACTGACTTGTG
* * *
919998 GGCTTCAAAAAGGTGTCACTGACTTGTGGGCTTTAAAAGGGTGCTACTGACT
63 GGCTTCAAAAAGGTGCCACTGACTCGTGGGCTTTAAAAGGGTGCAACTGACT
* *
920050 TGTGGGCTTCGAGAGAAGTTGCCACCGACTTGTATGGGCTTAAAGGGGTGCCACTGACTTGTGGG
1 TGTGGGCTTCGAGAGAAGATGCCACCGACTTG-ATGGACTTAAAGGGGTGCCACTGACTTGTGGG
** * *
920115 CTTTGAGAAGGATGCCACTGACTCGTGGGCTTTGAAAA-TGTGCAACTGACT
65 CTTCAAAAAGG-TGCCACTGACTCGTGGGCTTT-AAAAGGGTGCAACTGACT
* * *
920166 TGTGGGCTTTGA-A-AGGATGCCACTGACTTG-TGGACTCTAAA
1 TGTGGGCTTCGAGAGAAGATGCCACCGACTTGATGGACT-TAAA
920207 AAAGGTCGTT
Statistics
Matches: 132, Mismatches: 18, Indels: 15
0.80 0.11 0.09
Matches are distributed among these distances:
112 5 0.04
113 4 0.03
114 37 0.28
115 38 0.29
116 43 0.33
117 5 0.04
ACGTcount: A:0.23, C:0.18, G:0.31, T:0.28
Consensus pattern (114 bp):
TGTGGGCTTCGAGAGAAGATGCCACCGACTTGATGGACTTAAAGGGGTGCCACTGACTTGTGGGC
TTCAAAAAGGTGCCACTGACTCGTGGGCTTTAAAAGGGTGCAACTGACT
Found at i:920236 original size:14 final size:14
Alignment explanation
Indices: 920217--920304 Score: 58
Period size: 14 Copynumber: 6.6 Consensus size: 14
920207 AAAGGTCGTT
920217 TTGACAAAAATTTC
1 TTGACAAAAATTTC
*
920231 TTGAC-AAAGTTTC
1 TTGACAAAAATTTC
* *
920244 -TAACAAACA-TTC
1 TTGACAAAAATTTC
* * *
920256 TCGAC-AGAAGTTC
1 TTGACAAAAATTTC
* *
920269 TTGACGATAATTTC
1 TTGACAAAAATTTC
**
920283 TTGACAACCATTTC
1 TTGACAAAAATTTC
920297 TTGACAAA
1 TTGACAAA
920305 TGGTGAATTA
Statistics
Matches: 55, Mismatches: 15, Indels: 8
0.71 0.19 0.10
Matches are distributed among these distances:
12 8 0.15
13 18 0.33
14 29 0.53
ACGTcount: A:0.36, C:0.19, G:0.11, T:0.33
Consensus pattern (14 bp):
TTGACAAAAATTTC
Found at i:926179 original size:13 final size:13
Alignment explanation
Indices: 926161--926186 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
926151 CAATTTTTTG
926161 TGTATCGATACAT
1 TGTATCGATACAT
926174 TGTATCGATACAT
1 TGTATCGATACAT
926187 ACTTGCTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:935518 original size:20 final size:20
Alignment explanation
Indices: 935493--935566 Score: 78
Period size: 20 Copynumber: 3.7 Consensus size: 20
935483 AAAAAGACAG
935493 ATGTATCGATACATTAAAGA
1 ATGTATCGATACATTAAAGA
* * * *
935513 ATGTATCGATATATTTATGC
1 ATGTATCGATACATTAAAGA
*
935533 ATGTATCGATAAATTGAAA-A
1 ATGTATCGATACATT-AAAGA
*
935553 ATGTATCAATACAT
1 ATGTATCGATACAT
935567 CTGGGTAAAA
Statistics
Matches: 43, Mismatches: 10, Indels: 2
0.78 0.18 0.04
Matches are distributed among these distances:
20 42 0.98
21 1 0.02
ACGTcount: A:0.42, C:0.09, G:0.14, T:0.35
Consensus pattern (20 bp):
ATGTATCGATACATTAAAGA
Found at i:939408 original size:13 final size:13
Alignment explanation
Indices: 939390--939416 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
939380 TATAATGATC
939390 ATGTATCGATACA
1 ATGTATCGATACA
939403 ATGTATCGATACA
1 ATGTATCGATACA
939416 A
1 A
939417 AGCATAATAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.41, C:0.15, G:0.15, T:0.30
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:941266 original size:33 final size:33
Alignment explanation
Indices: 941207--941276 Score: 88
Period size: 33 Copynumber: 2.1 Consensus size: 33
941197 GCCGTTACAA
*
941207 GCAATGTATCGATACAATTCATCATGTATCGAT
1 GCAATGTATCGATACAATTCACCATGTATCGAT
* * *
941240 GCAATGTATCGGTAC-ATTGTACCATGTATTGAT
1 GCAATGTATCGATACAATT-CACCATGTATCGAT
941273 GCAA
1 GCAA
941277 ATAATGGTAG
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
32 3 0.09
33 29 0.91
ACGTcount: A:0.31, C:0.17, G:0.19, T:0.33
Consensus pattern (33 bp):
GCAATGTATCGATACAATTCACCATGTATCGAT
Found at i:941349 original size:19 final size:19
Alignment explanation
Indices: 941305--941360 Score: 76
Period size: 19 Copynumber: 2.9 Consensus size: 19
941295 CTGCCAAATT
**
941305 CATGTATCGATACAATTGCC
1 CATGTATCGATACAA-TGAA
941325 CATGTATCGATACAATGAA
1 CATGTATCGATACAATGAA
*
941344 CATGTATCGATATAATG
1 CATGTATCGATACAATG
941361 TATCGATACA
Statistics
Matches: 33, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
19 18 0.55
20 15 0.45
ACGTcount: A:0.36, C:0.18, G:0.16, T:0.30
Consensus pattern (19 bp):
CATGTATCGATACAATGAA
Found at i:941367 original size:32 final size:33
Alignment explanation
Indices: 941326--941388 Score: 94
Period size: 32 Copynumber: 1.9 Consensus size: 33
941316 ACAATTGCCC
*
941326 ATGTATCGATACAATG-A-ACATGTATCGATATA
1 ATGTATCGATACAAAGCATA-ATGTATCGATATA
941358 ATGTATCGATACAAAGCATAATGTATCGATA
1 ATGTATCGATACAAAGCATAATGTATCGATA
941389 CATCTGGGTG
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
32 15 0.54
33 12 0.43
34 1 0.04
ACGTcount: A:0.41, C:0.13, G:0.16, T:0.30
Consensus pattern (33 bp):
ATGTATCGATACAAAGCATAATGTATCGATATA
Found at i:941763 original size:14 final size:14
Alignment explanation
Indices: 941744--941774 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
941734 TGGGGACGAA
941744 TCCATTTCCCATCG
1 TCCATTTCCCATCG
941758 TCCATTTCCCATCG
1 TCCATTTCCCATCG
941772 TCC
1 TCC
941775 TTAGTCAAGA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.13, C:0.45, G:0.06, T:0.35
Consensus pattern (14 bp):
TCCATTTCCCATCG
Found at i:942026 original size:13 final size:13
Alignment explanation
Indices: 942008--942033 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
941998 CATTATTCAA
942008 TGTATCGATACAT
1 TGTATCGATACAT
942021 TGTATCGATACAT
1 TGTATCGATACAT
942034 CGATCTTTGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:942097 original size:20 final size:19
Alignment explanation
Indices: 942072--942146 Score: 96
Period size: 20 Copynumber: 3.8 Consensus size: 19
942062 TTTACCCAGA
942072 TGTATCGATACATTTTGCAT
1 TGTATCGATACATTTT-CAT
*
942092 TGTATCGATACATTGCTCAT
1 TGTATCGATACATT-TTCAT
* *
942112 TGTATCGATACATTTAACAA
1 TGTATCGATACATTT-TCAT
942132 TGTATCGATACATTT
1 TGTATCGATACATTT
942147 AGGCATTTTT
Statistics
Matches: 49, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
20 48 0.98
21 1 0.02
ACGTcount: A:0.29, C:0.16, G:0.13, T:0.41
Consensus pattern (19 bp):
TGTATCGATACATTTTCAT
Found at i:944505 original size:51 final size:50
Alignment explanation
Indices: 944440--944608 Score: 205
Period size: 51 Copynumber: 3.3 Consensus size: 50
944430 ATTTTTCATC
* * *
944440 TCGGGGATACTCCAA-TCCCGGTTTCATTTCCAAAACATCAATTTTTCTTAA
1 TCGGGGATACTCCAACT-CCGATTTTATTTCCAAAACACCAA-TTTTCTTAA
* *
944491 TCGGGGATACTCCAACTCCGATTTTATTTCTAAAACACCCATTTTCTATAA
1 TCGGGGATACTCCAACTCCGATTTTATTTCCAAAACACCAATTTTCT-TAA
* * * **
944542 TCGGGGATACTCCAACTCTGATTTTATTTTCAAAACACCGACTTTTCACAA
1 TCGGGGATACTCCAACTCCGATTTTATTTCCAAAACACC-AATTTTCTTAA
944593 TCGGGGATACTCCAAC
1 TCGGGGATACTCCAAC
944609 CTCGTTATTT
Statistics
Matches: 103, Mismatches: 12, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
50 6 0.06
51 91 0.88
52 6 0.06
ACGTcount: A:0.28, C:0.26, G:0.12, T:0.33
Consensus pattern (50 bp):
TCGGGGATACTCCAACTCCGATTTTATTTCCAAAACACCAATTTTCTTAA
Found at i:944703 original size:28 final size:28
Alignment explanation
Indices: 944671--944743 Score: 119
Period size: 28 Copynumber: 2.6 Consensus size: 28
944661 AATTTTCATC
* **
944671 GGGGATACTCCAATCCCGTTATTTTTGA
1 GGGGATACTCCAACCCCGTTATTTCCGA
944699 GGGGATACTCCAACCCCGTTATTTCCGA
1 GGGGATACTCCAACCCCGTTATTTCCGA
944727 GGGGATACTCCAACCCC
1 GGGGATACTCCAACCCC
944744 TGTTTTATTT
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 42 1.00
ACGTcount: A:0.22, C:0.30, G:0.22, T:0.26
Consensus pattern (28 bp):
GGGGATACTCCAACCCCGTTATTTCCGA
Found at i:944791 original size:51 final size:51
Alignment explanation
Indices: 944726--944846 Score: 163
Period size: 51 Copynumber: 2.4 Consensus size: 51
944716 GTTATTTCCG
*
944726 AGGGGATACTCCAACCCCTG-TTTTATTTCTAAAACACCAATTCTCCACAAT
1 AGGGGATACTCCAACCCC-GATTTTATTTCCAAAACACCAATTCTCCACAAT
* * * * * *
944777 CGGGGATATTCCAACTCCGATTTTATTTCCAAAACACTAATTTTTCACAAT
1 AGGGGATACTCCAACCCCGATTTTATTTCCAAAACACCAATTCTCCACAAT
944828 AGGGGATACTCCAACCCCG
1 AGGGGATACTCCAACCCCG
944847 TTATTCTCGA
Statistics
Matches: 59, Mismatches: 10, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
50 1 0.02
51 58 0.98
ACGTcount: A:0.31, C:0.28, G:0.12, T:0.29
Consensus pattern (51 bp):
AGGGGATACTCCAACCCCGATTTTATTTCCAAAACACCAATTCTCCACAAT
Found at i:953706 original size:20 final size:20
Alignment explanation
Indices: 953678--953737 Score: 86
Period size: 20 Copynumber: 3.0 Consensus size: 20
953668 TTGCCAATCT
*
953678 CATGGATCGATACAATTATC
1 CATGTATCGATACAATTATC
*
953698 CATGTATCGATACAATTA-A
1 CATGTATCGATACAATTATC
953717 CATGTATCGATACAATGTATC
1 CATGTATCGATACAAT-TATC
953738 GATACAAAGC
Statistics
Matches: 35, Mismatches: 3, Indels: 3
0.85 0.07 0.07
Matches are distributed among these distances:
19 16 0.46
20 19 0.54
ACGTcount: A:0.37, C:0.18, G:0.13, T:0.32
Consensus pattern (20 bp):
CATGTATCGATACAATTATC
Found at i:953736 original size:13 final size:13
Alignment explanation
Indices: 953718--953744 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
953708 TACAATTAAC
953718 ATGTATCGATACA
1 ATGTATCGATACA
953731 ATGTATCGATACA
1 ATGTATCGATACA
953744 A
1 A
953745 AGCATAATGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.41, C:0.15, G:0.15, T:0.30
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:959318 original size:52 final size:52
Alignment explanation
Indices: 959212--959327 Score: 135
Period size: 52 Copynumber: 2.2 Consensus size: 52
959202 CTGCATGAAA
* * **
959212 TGTATCGATACATCTAGGCAAATTTGCCTGTATGTATCGATACATTTCATAG
1 TGTATCGATACATCTAGGCAAATTTACCTGCATGTATCGATACATAACATAG
* * * * *
959264 TGTATCAATACATCTGGGCAAGTTTACTTGCATGTATCGATACA-AAGATCAG
1 TGTATCGATACATCTAGGCAAATTTACCTGCATGTATCGATACATAACAT-AG
959316 TGTATCGATACA
1 TGTATCGATACA
959328 ATGTATCGAT
Statistics
Matches: 53, Mismatches: 10, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
51 2 0.04
52 51 0.96
ACGTcount: A:0.31, C:0.17, G:0.18, T:0.34
Consensus pattern (52 bp):
TGTATCGATACATCTAGGCAAATTTACCTGCATGTATCGATACATAACATAG
Found at i:959334 original size:13 final size:13
Alignment explanation
Indices: 959316--959340 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
959306 CAAAGATCAG
959316 TGTATCGATACAA
1 TGTATCGATACAA
959329 TGTATCGATACA
1 TGTATCGATACA
959341 TTTGAGTAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:959965 original size:51 final size:51
Alignment explanation
Indices: 959733--959966 Score: 274
Period size: 51 Copynumber: 4.6 Consensus size: 51
959723 AAATTTCTAG
* * * *
959733 ATTTTTCAT-CTCGGGGATACTCCAATCCCGGTTTCATTTCCAAAACATCA
1 ATTTTTCATAATCGGGGATACTCCAACCCCGATTTTATTTCCAAAACATCA
* * * * *
959783 ATTTTTCTTAATCGGGGATACTCCAACTCCGATTTTATTTCTAAAACACCC
1 ATTTTTCATAATCGGGGATACTCCAACCCCGATTTTATTTCCAAAACATCA
* * * * *
959834 ATTTTCCATAATCGGGGATACTCTAACTCCGATTTTTTTTCCAAAACA-CTG
1 ATTTTTCATAATCGGGGATACTCCAACCCCGATTTTATTTCCAAAACATC-A
* * * *
959885 ACTTTTCACAATCGGGGATACTCCAACCCCGGTTTTATTTCTAAAACATCA
1 ATTTTTCATAATCGGGGATACTCCAACCCCGATTTTATTTCCAAAACATCA
*
959936 ATTTTTCATAATCGGGGATGCTCCAACCCCG
1 ATTTTTCATAATCGGGGATACTCCAACCCCG
959967 TTATTTCTGA
Statistics
Matches: 154, Mismatches: 27, Indels: 5
0.83 0.15 0.03
Matches are distributed among these distances:
50 9 0.06
51 144 0.94
52 1 0.01
ACGTcount: A:0.27, C:0.26, G:0.12, T:0.34
Consensus pattern (51 bp):
ATTTTTCATAATCGGGGATACTCCAACCCCGATTTTATTTCCAAAACATCA
Found at i:960131 original size:130 final size:129
Alignment explanation
Indices: 959847--960382 Score: 420
Period size: 130 Copynumber: 4.1 Consensus size: 129
959837 TTCCATAATC
* * * * * * * *
959847 GGGGATACTCTAACTCCGATTTTTTTTCCAAAACACTGACTTT-TCACAATCGGGGATACTCCAA
1 GGGGATACTCCAACCCCAACTTTATTTCCAAAACA-TCAATTTCTCACAATCGGGGATACTTCAA
* *
959911 CCCCGGTTTTATTTCTAAAACATCAATTTTTCATAATCGGGGATGCTCCAACCCCGTTATTTCTG
65 CCCCGGTTTTATTTCTAAAACAT-AATTTTTCATAATCGGGGATACTCCAACCCCATTATTTCTG
959976 A
129 A
* * * *
959977 GGGGATACTCCAACCTCAATTTTATTTCTAAAACATCAA-TTCTCCACAATCGGGGATATTTCAA
1 GGGGATACTCCAACCCCAACTTTATTTCCAAAACATCAATTTCT-CACAATCGGGGATACTTCAA
* * * *
960041 CTCCGATTTTATTTCCAAAACACTAATTTTTCACAATCGGGGATACTCCAACCCCATTATTTCAT
65 CCCCGGTTTTATTTCTAAAACA-TAATTTTTCATAATCGGGGATACTCCAACCCCATTATTTC-T
*
960106 -C
128 GA
* ** * * * *
960107 GGGGCTACTCCAACCCCGGCTTTATTTCCAAAATATTAATTTCTTACAATC-GAGATACTTCAAC
1 GGGGATACTCCAACCCCAACTTTATTTCCAAAACATCAATTTCTCACAATCGGGGATACTTCAAC
** * * * * * *
960171 CCCGGCCTTATTTCTATAATATTGATTTCTCATAATTGGGGATACTCCAACCCCATTATTT-TCA
66 CCCGGTTTTATTTCTAAAACA-TAATTTTTCATAATCGGGGATACTCCAACCCCATTATTTCTGA
** * * * *** * * *
960235 CATGGATACTCCAATCCCGATTTTATTTTTGAAACATCTATTT-TCTATAATCGGGGACACTTCA
1 -GGGGATACTCCAACCCCAACTTTATTTCCAAAACATCAATTTCTC-ACAATCGGGGATACTTCA
** ** * * * ** * *
960299 ACCCTTGCCTTATTTCTAAATCATCGATTTTTCACAATCAAGGATACTTCAACCCCGTTATTT-T
64 ACCCCGGTTTTATTTCTAAAACAT-AATTTTTCATAATCGGGGATACTCCAACCCCATTATTTCT
960363 CGA
128 -GA
*
960366 GGGGATACTCCGACCCC
1 GGGGATACTCCAACCCC
960383 GTTATTATCT
Statistics
Matches: 321, Mismatches: 74, Indels: 22
0.77 0.18 0.05
Matches are distributed among these distances:
127 1 0.00
128 3 0.01
129 99 0.31
130 211 0.66
131 7 0.02
ACGTcount: A:0.28, C:0.26, G:0.12, T:0.34
Consensus pattern (129 bp):
GGGGATACTCCAACCCCAACTTTATTTCCAAAACATCAATTTCTCACAATCGGGGATACTTCAAC
CCCGGTTTTATTTCTAAAACATAATTTTTCATAATCGGGGATACTCCAACCCCATTATTTCTGA
Found at i:960398 original size:259 final size:259
Alignment explanation
Indices: 959892--960410 Score: 561
Period size: 259 Copynumber: 2.0 Consensus size: 259
959882 CTGACTTTTC
* ** * *
959892 ACAATCGGGGATACTCCAACCCCGGTTTTATTTCTAAAACATCAATTTTTCATAATCGGGGATGC
1 ACAATCGGAGATACTCCAACCCCGGCCTTATTTCTAAAACATCAATTTCTCATAATCGGGGATAC
* * *
959957 TCCAACCCCGTTATTTCTGAGGGGATACTCCAACCTCAATTTTATTTCTAAAACATCAATTCTCC
66 TCCAACCCCATTATTTCTCAAGGGATACTCCAACCTCAATTTTATTTCTAAAACATCAATTCTCC
* * **
960022 ACAATCGGGGATATTTCAACTCCGATTTTATTTCCAAAACACTAATTTTTCACAATCGGGGATAC
131 ACAATCGGGGACACTTCAACTCC-ATTTTATTTCCAAAACACTAATTTTTCACAATCAAGGATAC
* *
960087 TCCAACCCCATTATTTCATCGGGGCTACTCCAACCCCGGCTTTATTTCCAAAATATT-AATTTCT
195 TCCAACCCCATTATTTCA-CGGGGATACTCCAACCCCGGCTTTATCTCCAAAATATTAAATTTCT
960151 T
259 T
* * * ** *
960152 ACAATC-GAGATACTTCAACCCCGGCCTTATTTCTATAATATTGATTTCTCATAATTGGGGATAC
1 ACAATCGGAGATACTCCAACCCCGGCCTTATTTCTAAAACATCAATTTCTCATAATCGGGGATAC
* * * * * *
960216 TCCAACCCCATTATTT-TCACATGGATACTCCAATCC-CGATTTTATTTTTGAAACATCTATTTT
66 TCCAACCCCATTATTTCTCA-AGGGATACTCCAA-CCTCAATTTTATTTCTAAAACATCAATTCT
* * * * *
960279 CTATAATCGGGGACACTTCAAC-CC-TTGCCTTATTTCTAAATCA-TCGATTTTTCACAATCAAG
129 CCACAATCGGGGACACTTCAACTCCATT---TTATTTCCAAAACACT-AATTTTTCACAATCAAG
* * * *
960341 GATACTTCAACCCCGTTATTTTCGA-GGGGATACTCCGACCCC-GTTATTATCTCCAAAATATTA
190 GATACTCCAACCCCATTA-TTTC-ACGGGGATACTCCAACCCCGGCT-TTATCTCCAAAATATTA
960404 AATTTCT
252 AATTTCT
960411 CGTTGGGAGA
Statistics
Matches: 214, Mismatches: 35, Indels: 20
0.80 0.13 0.07
Matches are distributed among these distances:
256 2 0.01
258 7 0.03
259 185 0.86
260 19 0.09
261 1 0.00
ACGTcount: A:0.28, C:0.25, G:0.12, T:0.34
Consensus pattern (259 bp):
ACAATCGGAGATACTCCAACCCCGGCCTTATTTCTAAAACATCAATTTCTCATAATCGGGGATAC
TCCAACCCCATTATTTCTCAAGGGATACTCCAACCTCAATTTTATTTCTAAAACATCAATTCTCC
ACAATCGGGGACACTTCAACTCCATTTTATTTCCAAAACACTAATTTTTCACAATCAAGGATACT
CCAACCCCATTATTTCACGGGGATACTCCAACCCCGGCTTTATCTCCAAAATATTAAATTTCTT
Found at i:961774 original size:46 final size:46
Alignment explanation
Indices: 961721--961812 Score: 184
Period size: 46 Copynumber: 2.0 Consensus size: 46
961711 CAATTAATGA
961721 TTTGGTATTAGAATTTAAGTCAATGAACTCTAAGCATAAGAAAACT
1 TTTGGTATTAGAATTTAAGTCAATGAACTCTAAGCATAAGAAAACT
961767 TTTGGTATTAGAATTTAAGTCAATGAACTCTAAGCATAAGAAAACT
1 TTTGGTATTAGAATTTAAGTCAATGAACTCTAAGCATAAGAAAACT
961813 ATCTCTAAAC
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
46 46 1.00
ACGTcount: A:0.41, C:0.11, G:0.15, T:0.33
Consensus pattern (46 bp):
TTTGGTATTAGAATTTAAGTCAATGAACTCTAAGCATAAGAAAACT
Found at i:964298 original size:13 final size:13
Alignment explanation
Indices: 964280--964305 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
964270 CAATTTTTTG
964280 TGTATCGATACAT
1 TGTATCGATACAT
964293 TGTATCGATACAT
1 TGTATCGATACAT
964306 ACTTTGTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Done.