Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold171
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 2364178
ACGTcount: A:0.28, C:0.16, G:0.16, T:0.28
Warning! 278680 characters in sequence are not A, C, G, or T
File 9 of 13
Found at i:1467295 original size:20 final size:21
Alignment explanation
Indices: 1467217--1467294 Score: 70
Period size: 20 Copynumber: 3.6 Consensus size: 21
1467207 ATGTCCAAAA
*
1467217 TGTATCGATACATGTTTTTG-
1 TGTATCGATACATCTTTTTGT
** *
1467237 TGTATCGATACATCTGGAAATTCT
1 TGTATCGATACATCT---TTTTGT
1467261 ATGTATCGATACAT-TTTTTGT
1 -TGTATCGATACATCTTTTTGT
1467282 TGTATCGATACAT
1 TGTATCGATACAT
1467295 TGTATCGATA
Statistics
Matches: 46, Mismatches: 7, Indels: 10
0.73 0.11 0.16
Matches are distributed among these distances:
20 27 0.59
21 3 0.07
23 2 0.04
24 1 0.02
25 13 0.28
ACGTcount: A:0.26, C:0.13, G:0.17, T:0.45
Consensus pattern (21 bp):
TGTATCGATACATCTTTTTGT
Found at i:1467299 original size:13 final size:13
Alignment explanation
Indices: 1467281--1467319 Score: 69
Period size: 13 Copynumber: 3.0 Consensus size: 13
1467271 ACATTTTTTG
1467281 TTGTATCGATACA
1 TTGTATCGATACA
1467294 TTGTATCGATACA
1 TTGTATCGATACA
*
1467307 CTGTATCGATACA
1 TTGTATCGATACA
1467320 GGGTGATTAT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 25 1.00
ACGTcount: A:0.31, C:0.18, G:0.15, T:0.36
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:1469794 original size:20 final size:20
Alignment explanation
Indices: 1469771--1469843 Score: 101
Period size: 20 Copynumber: 3.6 Consensus size: 20
1469761 ACAATTCAAA
1469771 GTATCGATACATGTTGCAAT
1 GTATCGATACATGTTGCAAT
****
1469791 GTATCGATACATGAAAAAGAT
1 GTATCGATACATGTTGCA-AT
1469812 GTATCGATACATGTTGCAAT
1 GTATCGATACATGTTGCAAT
1469832 GTATCGATACAT
1 GTATCGATACAT
1469844 AAAAAAGATG
Statistics
Matches: 44, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
20 28 0.64
21 16 0.36
ACGTcount: A:0.36, C:0.14, G:0.19, T:0.32
Consensus pattern (20 bp):
GTATCGATACATGTTGCAAT
Found at i:1469815 original size:21 final size:21
Alignment explanation
Indices: 1469789--1469864 Score: 100
Period size: 21 Copynumber: 3.7 Consensus size: 21
1469779 ACATGTTGCA
1469789 ATGTATCGATACATGAAAAAG
1 ATGTATCGATACATGAAAAAG
****
1469810 ATGTATCGATACATGTTGCA-
1 ATGTATCGATACATGAAAAAG
*
1469830 ATGTATCGATACATAAAAAAG
1 ATGTATCGATACATGAAAAAG
1469851 ATGTATCGATACAT
1 ATGTATCGATACAT
1469865 TTCTTGGCAG
Statistics
Matches: 45, Mismatches: 9, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
20 15 0.33
21 30 0.67
ACGTcount: A:0.42, C:0.12, G:0.17, T:0.29
Consensus pattern (21 bp):
ATGTATCGATACATGAAAAAG
Found at i:1469822 original size:41 final size:41
Alignment explanation
Indices: 1469771--1469864 Score: 179
Period size: 41 Copynumber: 2.3 Consensus size: 41
1469761 ACAATTCAAA
*
1469771 GTATCGATACATGTTGCAATGTATCGATACATGAAAAAGAT
1 GTATCGATACATGTTGCAATGTATCGATACATAAAAAAGAT
1469812 GTATCGATACATGTTGCAATGTATCGATACATAAAAAAGAT
1 GTATCGATACATGTTGCAATGTATCGATACATAAAAAAGAT
1469853 GTATCGATACAT
1 GTATCGATACAT
1469865 TTCTTGGCAG
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 52 1.00
ACGTcount: A:0.39, C:0.13, G:0.18, T:0.30
Consensus pattern (41 bp):
GTATCGATACATGTTGCAATGTATCGATACATAAAAAAGAT
Found at i:1469921 original size:13 final size:13
Alignment explanation
Indices: 1469903--1469928 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
1469893 TACAGCAAGT
1469903 ATGTATCGATACA
1 ATGTATCGATACA
1469916 ATGTATCGATACA
1 ATGTATCGATACA
1469929 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:1472936 original size:13 final size:13
Alignment explanation
Indices: 1472918--1472943 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
1472908 CAATTTTTTG
1472918 TGTATCGATACAT
1 TGTATCGATACAT
1472931 TGTATCGATACAT
1 TGTATCGATACAT
1472944 ACTTGGTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:1472958 original size:32 final size:33
Alignment explanation
Indices: 1472898--1472961 Score: 94
Period size: 32 Copynumber: 2.0 Consensus size: 33
1472888 TACAAGCCAA
** *
1472898 TGTATCGATACAATTTTTTGTGTATCGATACAT
1 TGTATCGATACAATACTTGGTGTATCGATACAT
1472931 TGTATCGATAC-ATACTTGGTGTATCGATACA
1 TGTATCGATACAATACTTGGTGTATCGATACA
1472962 AGTTTGGCTA
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
32 17 0.61
33 11 0.39
ACGTcount: A:0.28, C:0.14, G:0.17, T:0.41
Consensus pattern (33 bp):
TGTATCGATACAATACTTGGTGTATCGATACAT
Found at i:1473361 original size:55 final size:57
Alignment explanation
Indices: 1473281--1473394 Score: 187
Period size: 55 Copynumber: 2.0 Consensus size: 57
1473271 AAATAGTTTC
*
1473281 CGGTTTTATTCAATCCTTTGTTATATCAAAACCAAGATCCTAACACAAAC-ATTTTT
1 CGGTTTTATTCAATCCTTTGTTATATCAAAACCAAGATCCTAACAAAAACGATTTTT
*
1473337 CGGTTTTATTCCAT-CTTTGTTATATCAAAACCAAGATCCTAACAAAAACTGATTTTT
1 CGGTTTTATTCAATCCTTTGTTATATCAAAACCAAGATCCTAACAAAAAC-GATTTTT
1473394 C
1 C
1473395 CAAATCTCTC
Statistics
Matches: 54, Mismatches: 2, Indels: 3
0.92 0.03 0.05
Matches are distributed among these distances:
55 34 0.63
56 13 0.24
57 7 0.13
ACGTcount: A:0.33, C:0.21, G:0.08, T:0.38
Consensus pattern (57 bp):
CGGTTTTATTCAATCCTTTGTTATATCAAAACCAAGATCCTAACAAAAACGATTTTT
Found at i:1475450 original size:50 final size:51
Alignment explanation
Indices: 1475344--1475455 Score: 156
Period size: 50 Copynumber: 2.2 Consensus size: 51
1475334 ACAGTACATG
*
1475344 TATCGATACATTCTGGTTTTTTACCCAGATGTATCAATACATGTATGAATA
1 TATCGATACATTCTGGTTTTTTACCCAGATGTATCAATACATGTATCAATA
* * * *
1475395 TATCGATACATTCT-GTTTTTTACCTAGATGTATCGATACATTTTTCAATGA
1 TATCGATACATTCTGGTTTTTTACCCAGATGTATCAATACATGTATCAAT-A
1475446 -ATCGATACAT
1 TATCGATACAT
1475456 CTAGTTAATT
Statistics
Matches: 55, Mismatches: 5, Indels: 3
0.87 0.08 0.05
Matches are distributed among these distances:
50 40 0.73
51 15 0.27
ACGTcount: A:0.30, C:0.16, G:0.12, T:0.41
Consensus pattern (51 bp):
TATCGATACATTCTGGTTTTTTACCCAGATGTATCAATACATGTATCAATA
Found at i:1480293 original size:56 final size:56
Alignment explanation
Indices: 1480226--1480335 Score: 220
Period size: 56 Copynumber: 2.0 Consensus size: 56
1480216 ACAAAGCAAG
1480226 GCACAAACATTTTAGGAGCATATAAAAGTCATTTTTGTTTGAAAAATCATGTGTAC
1 GCACAAACATTTTAGGAGCATATAAAAGTCATTTTTGTTTGAAAAATCATGTGTAC
1480282 GCACAAACATTTTAGGAGCATATAAAAGTCATTTTTGTTTGAAAAATCATGTGT
1 GCACAAACATTTTAGGAGCATATAAAAGTCATTTTTGTTTGAAAAATCATGTGT
1480336 TTGAACTCAT
Statistics
Matches: 54, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
56 54 1.00
ACGTcount: A:0.37, C:0.12, G:0.16, T:0.35
Consensus pattern (56 bp):
GCACAAACATTTTAGGAGCATATAAAAGTCATTTTTGTTTGAAAAATCATGTGTAC
Found at i:1481542 original size:20 final size:20
Alignment explanation
Indices: 1481517--1481629 Score: 183
Period size: 20 Copynumber: 5.7 Consensus size: 20
1481507 AAAAAAAGAT
1481517 AGAATGTATCGATACATTGA
1 AGAATGTATCGATACATTGA
1481537 AGAATGTATCGATACATTGA
1 AGAATGTATCGATACATTGA
1481557 AGAATGTATCGATACATTGA
1 AGAATGTATCGATACATTGA
* *
1481577 AGAATGTATCGATACAGTCA
1 AGAATGTATCGATACATTGA
*
1481597 TA-CATGTATCGATACATTGA
1 -AGAATGTATCGATACATTGA
1481617 AGAATGTATCGAT
1 AGAATGTATCGAT
1481630 TCATCTGGGT
Statistics
Matches: 85, Mismatches: 6, Indels: 4
0.89 0.06 0.04
Matches are distributed among these distances:
19 1 0.01
20 83 0.98
21 1 0.01
ACGTcount: A:0.39, C:0.12, G:0.19, T:0.30
Consensus pattern (20 bp):
AGAATGTATCGATACATTGA
Found at i:1481572 original size:40 final size:41
Alignment explanation
Indices: 1481515--1481804 Score: 221
Period size: 40 Copynumber: 6.7 Consensus size: 41
1481505 GGAAAAAAAG
* *
1481515 ATAGAATGTATCGATACATTGAAGAATGTATCGATACATTG
1 ATAGAATGTATCGATACATTGAAGAATGTATCGATACAGTC
1481556 A-AGAATGTATCGATACATTGAAGAATGTATCGATACAGTC
1 ATAGAATGTATCGATACATTGAAGAATGTATCGATACAGTC
* * *
1481596 ATA-CATGTATCGATACATTGAAGAATGTATCGATTCATCTGGGTAAAAAG
1 ATAGAATGTATCGATACATTGAAGAATGTATCGA-T-A-C--AGT-----C
* * *
1481646 ATAGAATGTATCAATACATGGAAGAATGTATCGATATAGTC
1 ATAGAATGTATCGATACATTGAAGAATGTATCGATACAGTC
* * * **
1481687 ATA-CATGTATCAATACATTGAAAAATGTATCGATATATCTAAGGAAAAAG
1 ATAGAATGTATCGATACATTGAAGAATGTATCG--ATA-C--A-G----TC
*
1481737 ATAGAATGTATCAATACATTGAAGAATGTATCGATACA-TCC
1 ATAGAATGTATCGATACATTGAAGAATGTATCGATACAGT-C
*
1481778 ATA-CATGTATCGATACATTGAAGAATG
1 ATAGAATGTATCGATACATTGAAGAATG
1481805 ATCCTCTACC
Statistics
Matches: 202, Mismatches: 23, Indels: 49
0.74 0.08 0.18
Matches are distributed among these distances:
40 115 0.57
41 9 0.04
42 4 0.02
43 1 0.00
45 3 0.01
46 4 0.02
48 1 0.00
49 4 0.02
50 7 0.03
51 54 0.27
ACGTcount: A:0.41, C:0.11, G:0.18, T:0.29
Consensus pattern (41 bp):
ATAGAATGTATCGATACATTGAAGAATGTATCGATACAGTC
Found at i:1481673 original size:20 final size:20
Alignment explanation
Indices: 1481648--1481717 Score: 61
Period size: 20 Copynumber: 3.5 Consensus size: 20
1481638 GTAAAAAGAT
1481648 AGAATGTATCAATACATGGA
1 AGAATGTATCAATACATGGA
* * **
1481668 AGAATGTATCGATATA-GTC
1 AGAATGTATCAATACATGGA
* *
1481687 ATACATGTATCAATACATTGA
1 AGA-ATGTATCAATACATGGA
*
1481708 AAAATGTATC
1 AGAATGTATC
1481718 GATATATCTA
Statistics
Matches: 37, Mismatches: 11, Indels: 4
0.71 0.21 0.08
Matches are distributed among these distances:
19 3 0.08
20 32 0.86
21 2 0.05
ACGTcount: A:0.43, C:0.11, G:0.16, T:0.30
Consensus pattern (20 bp):
AGAATGTATCAATACATGGA
Found at i:1481673 original size:91 final size:91
Alignment explanation
Indices: 1481557--1481804 Score: 394
Period size: 91 Copynumber: 2.7 Consensus size: 91
1481547 GATACATTGA
*
1481557 AGAATGTATCGATACATTGAAGAATGTATCGATACAGTCATACATGTATCGATACATTGAAGAAT
1 AGAATGTATCAATACATTGAAGAATGTATCGATACAGTCATACATGTATCGATACATTGAAGAAT
*
1481622 GTATCGAT-TCATCT-GGGTAAAAAGAT
66 GTATCGATAT-ATCTAAGG-AAAAAGAT
* * * *
1481648 AGAATGTATCAATACATGGAAGAATGTATCGATATAGTCATACATGTATCAATACATTGAAAAAT
1 AGAATGTATCAATACATTGAAGAATGTATCGATACAGTCATACATGTATCGATACATTGAAGAAT
1481713 GTATCGATATATCTAAGGAAAAAGAT
66 GTATCGATATATCTAAGGAAAAAGAT
1481739 AGAATGTATCAATACATTGAAGAATGTATCGATACA-TCCATACATGTATCGATACATTGAAGAA
1 AGAATGTATCAATACATTGAAGAATGTATCGATACAGT-CATACATGTATCGATACATTGAAGAA
1481803 TG
65 TG
1481805 ATCCTCTACC
Statistics
Matches: 144, Mismatches: 10, Indels: 6
0.90 0.06 0.04
Matches are distributed among these distances:
90 1 0.01
91 140 0.97
92 3 0.02
ACGTcount: A:0.42, C:0.12, G:0.18, T:0.29
Consensus pattern (91 bp):
AGAATGTATCAATACATTGAAGAATGTATCGATACAGTCATACATGTATCGATACATTGAAGAAT
GTATCGATATATCTAAGGAAAAAGAT
Found at i:1481676 original size:51 final size:49
Alignment explanation
Indices: 1481600--1481771 Score: 175
Period size: 51 Copynumber: 3.6 Consensus size: 49
1481590 ACAGTCATAC
*
1481600 ATGTATCGATACATTGAAGAATGTATCGATTCATCTGGGTAAAAAGATAGA
1 ATGTATCAATACATTGAAGAATGTATCGATT-ATCT-GGTAAAAAGATAGA
* * * *
1481651 ATGTATCAATACATGGAAGAATGTATCGA-TA--TAGT-----CATA-C
1 ATGTATCAATACATTGAAGAATGTATCGATTATCTGGTAAAAAGATAGA
*
1481691 ATGTATCAATACATTGAAAAATGTATCGATATATCTAAGG-AAAAAGATAGA
1 ATGTATCAATACATTGAAGAATGTATCGAT-TATCT--GGTAAAAAGATAGA
1481742 ATGTATCAATACATTGAAGAATGTATCGAT
1 ATGTATCAATACATTGAAGAATGTATCGAT
1481772 ACATCCATAC
Statistics
Matches: 98, Mismatches: 11, Indels: 24
0.74 0.08 0.18
Matches are distributed among these distances:
40 27 0.28
41 3 0.03
42 2 0.02
44 1 0.01
46 3 0.03
47 1 0.01
49 1 0.01
50 4 0.04
51 56 0.57
ACGTcount: A:0.42, C:0.10, G:0.18, T:0.30
Consensus pattern (49 bp):
ATGTATCAATACATTGAAGAATGTATCGATTATCTGGTAAAAAGATAGA
Found at i:1481703 original size:131 final size:132
Alignment explanation
Indices: 1481468--1481721 Score: 377
Period size: 131 Copynumber: 1.9 Consensus size: 132
1481458 TTTTAACTAG
*
1481468 ATGTATCGATACATTGAAAAATATATCGATACATCTGGGAAAAAAAGATAGAATGTATCGATACA
1 ATGTATCGATACATTGAAAAATATATCGATACATCTGGGAAAAAAAGATAGAATGTATCAATACA
* * * * *
1481533 TTGAAGAATGTATCGATACATTGAAGAATGTATCGATACATTGAAGAATGTATCGATACAGTCAT
66 TGGAAGAATGTATCGATACAGTCAAGAATGTATCAATACATTGAAAAATGTATCGATACAGTCAT
1481598 AC
131 AC
* * * *
1481600 ATGTATCGATACATTGAAGAATGTATCGATTCATCTGGG-TAAAAAGATAGAATGTATCAATACA
1 ATGTATCGATACATTGAAAAATATATCGATACATCTGGGAAAAAAAGATAGAATGTATCAATACA
* *
1481664 TGGAAGAATGTATCGATATAGTCATA-CATGTATCAATACATTGAAAAATGTATCGATA
66 TGGAAGAATGTATCGATACAGTCA-AGAATGTATCAATACATTGAAAAATGTATCGATA
1481722 TATCTAAGGA
Statistics
Matches: 109, Mismatches: 12, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
131 72 0.66
132 37 0.34
ACGTcount: A:0.42, C:0.11, G:0.18, T:0.29
Consensus pattern (132 bp):
ATGTATCGATACATTGAAAAATATATCGATACATCTGGGAAAAAAAGATAGAATGTATCAATACA
TGGAAGAATGTATCGATACAGTCAAGAATGTATCAATACATTGAAAAATGTATCGATACAGTCAT
AC
Found at i:1481764 original size:20 final size:20
Alignment explanation
Indices: 1481739--1481804 Score: 80
Period size: 20 Copynumber: 3.3 Consensus size: 20
1481729 GGAAAAAGAT
*
1481739 AGAATGTATCAATACATTGA
1 AGAATGTATCGATACATTGA
**
1481759 AGAATGTATCGATACATCCA
1 AGAATGTATCGATACATTGA
*
1481779 TA-CATGTATCGATACATTGA
1 -AGAATGTATCGATACATTGA
1481799 AGAATG
1 AGAATG
1481805 ATCCTCTACC
Statistics
Matches: 37, Mismatches: 7, Indels: 4
0.77 0.15 0.08
Matches are distributed among these distances:
19 1 0.03
20 35 0.95
21 1 0.03
ACGTcount: A:0.41, C:0.14, G:0.17, T:0.29
Consensus pattern (20 bp):
AGAATGTATCGATACATTGA
Found at i:1482377 original size:21 final size:21
Alignment explanation
Indices: 1482353--1482393 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
1482343 GCCAATTCAA
1482353 GGCCAGCAACATTGGGCTAAG
1 GGCCAGCAACATTGGGCTAAG
*
1482374 GGCCAGCGACATTGGGCTAA
1 GGCCAGCAACATTGGGCTAA
1482394 TAAAGGGCTA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.27, C:0.24, G:0.34, T:0.15
Consensus pattern (21 bp):
GGCCAGCAACATTGGGCTAAG
Found at i:1482661 original size:85 final size:85
Alignment explanation
Indices: 1482560--1483284 Score: 905
Period size: 85 Copynumber: 8.6 Consensus size: 85
1482550 AAAAGAGTTA
* *
1482560 CCACTGGCTTGTGGGCTTTGAAAAGAGTGTCACTGACTTGTGGGCTTTAAAAGGGTGCCACTGAC
1 CCACTGACTTGTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGCTTTAAAAGGGTGCCACTGAC
*
1482625 TTGTGGGCTTTGAAAGGATG
66 TTGTGGGCTTTGAAAGGGTG
* * * *
1482645 TCACTAACTTGTGGGCTTTGAAAAGAGTGCCACTAACTTGTGGGCTTTGAAAGGGTGCCACTGAC
1 CCACTGACTTGTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGCTTTAAAAGGGTGCCACTGAC
*
1482710 CTGTGGGCTTTGAAAGGGTG
66 TTGTGGGCTTTGAAAGGGTG
* * * * * *
1482730 CCACTAACTTGTGGGCTTTGAAAGGA-TGCCACTGACTTATGAGTTTTGAAAAGAGTGCCACTGA
1 CCACTGACTTGTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGCTTT-AAAAGGGTGCCACTGA
1482794 CTTGTGGGCTTTGAAAGGGTG
65 CTTGTGGGCTTTGAAAGGGTG
** * *
1482815 CCACTGACTCATGGGCTTT-AAAAG-GATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTGA
1 CCACTGACTTGTGGGCTTTGAAAAGAG-TGCCACTGACTTGTGGGCTTTAAAAGGGTGCCACTGA
*
1482878 CTTGTGGGCTTTGAAAGGATG
65 CTTGTGGGCTTTGAAAGGGTG
* * * * *
1482899 CCACTGACTTGTGGGCTTTGAAAGGA-TGCCACTGACTTGTGAGTTTTGAAAGAGTGCCACTGAC
1 CCACTGACTTGTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGCTTTAAAAGGGTGCCACTGAC
1482963 TTGTGGGCTTTGAAAGGGTG
66 TTGTGGGCTTTGAAAGGGTG
** * *
1482983 CCACTGACTCATGGGCTTT-AAAAG-GATGCCACTGACTTATGGGCTTTAAAAAGGATGCCACTG
1 CCACTGACTTGTGGGCTTTGAAAAGAG-TGCCACTGACTTGTGGGCTTT-AAAAGGGTGCCACTG
*
1483046 ACTTGTGGGCTTTGAAAAGAGTTG
64 ACTTGTGGGCTTTG-AAAG-GGTG
* * * * * ** *
1483070 CCACCGACTTGTAGGCTTTAAAAAGA-TACCATTGACTTGTGGGCTTTGTAAGGATGCCACTGAC
1 CCACTGACTTGTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGCTTTAAAAGGGTGCCACTGAC
*
1483134 TTGTGGGCTTTGAAAAGAGTG
66 TTGTGGGCTTTG-AAAGGGTG
* * **
1483155 CCACTAACTTGTGGGCTTTGAAAAG-GTGCCACTGGCTTGTGGG-TTTGAAAA-GGTGCCGTTGA
1 CCACTGACTTGTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGCTTT-AAAAGGGTGCCACTGA
1483217 CTTGTGGGCTTTGAAAGGGTG
65 CTTGTGGGCTTTGAAAGGGTG
* *
1483238 TCACTGACTTGTGGGCTTTG-AAAGGGTGCCACTGACTTGTGGGCTTT
1 CCACTGACTTGTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGCTTT
1483285 GAAGAGATGA
Statistics
Matches: 551, Mismatches: 73, Indels: 33
0.84 0.11 0.05
Matches are distributed among these distances:
82 4 0.01
83 46 0.08
84 186 0.34
85 238 0.43
86 36 0.07
87 36 0.07
88 5 0.01
ACGTcount: A:0.23, C:0.17, G:0.31, T:0.29
Consensus pattern (85 bp):
CCACTGACTTGTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGCTTTAAAAGGGTGCCACTGAC
TTGTGGGCTTTGAAAGGGTG
Found at i:1483285 original size:28 final size:28
Alignment explanation
Indices: 1482492--1483287 Score: 928
Period size: 28 Copynumber: 27.9 Consensus size: 28
1482482 TTATAAAAAT
*
1482492 GGTGCCACTAACTTGTGCGGGCTTTGAAAAG
1 GGTGCCACTGACTTGT--GGGCTTTG-AAAG
* * * *
1482523 AGTTGCCACCGACTCATATTGGCTTTGAAAAG
1 -GGTGCCACTGACT--TGTGGGCTTTG-AAAG
* * *
1482555 AGTTACCACTGGCTTGTGGGCTTTGAAAAG
1 -GGTGCCACTGACTTGTGGGCTTTG-AAAG
* * *
1482585 AGTGTCACTGACTTGTGGGCTTTAAAAG
1 GGTGCCACTGACTTGTGGGCTTTGAAAG
1482613 GGTGCCACTGACTTGTGGGCTTTGAAAG
1 GGTGCCACTGACTTGTGGGCTTTGAAAG
* * *
1482641 GATGTCACTAACTTGTGGGCTTTGAAAAG
1 GGTGCCACTGACTTGTGGGCTTTG-AAAG
* *
1482670 AGTGCCACTAACTTGTGGGCTTTGAAAG
1 GGTGCCACTGACTTGTGGGCTTTGAAAG
*
1482698 GGTGCCACTGACCTGTGGGCTTTGAAAG
1 GGTGCCACTGACTTGTGGGCTTTGAAAG
*
1482726 GGTGCCACTAACTTGTGGGCTTTGAAAG
1 GGTGCCACTGACTTGTGGGCTTTGAAAG
* * * *
1482754 GATGCCACTGACTTATGAGTTTTGAAAAG
1 GGTGCCACTGACTTGTGGGCTTTG-AAAG
*
1482783 AGTGCCACTGACTTGTGGGCTTTGAAAG
1 GGTGCCACTGACTTGTGGGCTTTGAAAG
** *
1482811 GGTGCCACTGACTCATGGGCTTTAAAAG
1 GGTGCCACTGACTTGTGGGCTTTGAAAG
*
1482839 GATGCCACTGACTTGTGGGCTTTGAAAG
1 GGTGCCACTGACTTGTGGGCTTTGAAAG
*
1482867 GATGCCACTGACTTGTGGGCTTTGAAAG
1 GGTGCCACTGACTTGTGGGCTTTGAAAG
*
1482895 GATGCCACTGACTTGTGGGCTTTGAAAG
1 GGTGCCACTGACTTGTGGGCTTTGAAAG
* * *
1482923 GATGCCACTGACTTGTGAGTTTTGAAAG
1 GGTGCCACTGACTTGTGGGCTTTGAAAG
*
1482951 AGTGCCACTGACTTGTGGGCTTTGAAAG
1 GGTGCCACTGACTTGTGGGCTTTGAAAG
** *
1482979 GGTGCCACTGACTCATGGGCTTTAAAAG
1 GGTGCCACTGACTTGTGGGCTTTGAAAG
* * *
1483007 GATGCCACTGACTTATGGGCTTTAAAAAG
1 GGTGCCACTGACTTGTGGGCTTT-GAAAG
*
1483036 GATGCCACTGACTTGTGGGCTTTGAAAAG
1 GGTGCCACTGACTTGTGGGCTTTG-AAAG
* * * * *
1483065 AGTTGCCACCGACTTGTAGGCTTTAAAAA
1 -GGTGCCACTGACTTGTGGGCTTTGAAAG
* * * *
1483094 GATACCATTGACTTGTGGGCTTTGTAAG
1 GGTGCCACTGACTTGTGGGCTTTGAAAG
*
1483122 GATGCCACTGACTTGTGGGCTTTGAAAAG
1 GGTGCCACTGACTTGTGGGCTTTG-AAAG
* * *
1483151 AGTGCCACTAACTTGTGGGCTTTGAAAA
1 GGTGCCACTGACTTGTGGGCTTTGAAAG
* *
1483179 GGTGCCACTGGCTTGTGGG-TTTGAAAA
1 GGTGCCACTGACTTGTGGGCTTTGAAAG
**
1483206 GGTGCCGTTGACTTGTGGGCTTTGAAAG
1 GGTGCCACTGACTTGTGGGCTTTGAAAG
*
1483234 GGTGTCACTGACTTGTGGGCTTTGAAAG
1 GGTGCCACTGACTTGTGGGCTTTGAAAG
1483262 GGTGCCACTGACTTGTGGGCTTTGAA
1 GGTGCCACTGACTTGTGGGCTTTGAA
1483288 GAGATGAACG
Statistics
Matches: 662, Mismatches: 93, Indels: 22
0.85 0.12 0.03
Matches are distributed among these distances:
27 24 0.04
28 445 0.67
29 124 0.19
30 34 0.05
32 33 0.05
34 2 0.00
ACGTcount: A:0.23, C:0.17, G:0.30, T:0.29
Consensus pattern (28 bp):
GGTGCCACTGACTTGTGGGCTTTGAAAG
Found at i:1484513 original size:8 final size:8
Alignment explanation
Indices: 1484500--1484579 Score: 56
Period size: 9 Copynumber: 9.6 Consensus size: 8
1484490 ATCTAGACCC
1484500 TTTTTTGT
1 TTTTTTGT
1484508 TTTTTTG-
1 TTTTTTGT
*
1484515 TTATTT-T
1 TTTTTTGT
* *
1484522 TTTCTTGG
1 TTTTTTGT
1484530 TTTTTTGTT
1 TTTTTTG-T
1484539 TTTTTTGGT
1 TTTTTT-GT
1484548 TTTTTCTGT
1 TTTTT-TGT
*
1484557 TTCTTTTTT
1 TT-TTTTGT
*
1484566 ATTTTTTAT
1 -TTTTTTGT
1484575 TTTTT
1 TTTTT
1484580 AGGTATGAAG
Statistics
Matches: 57, Mismatches: 8, Indels: 14
0.72 0.10 0.18
Matches are distributed among these distances:
7 9 0.16
8 18 0.32
9 23 0.40
10 7 0.12
ACGTcount: A:0.04, C:0.04, G:0.10, T:0.82
Consensus pattern (8 bp):
TTTTTTGT
Found at i:1484523 original size:11 final size:10
Alignment explanation
Indices: 1484507--1484572 Score: 53
Period size: 11 Copynumber: 6.4 Consensus size: 10
1484497 CCCTTTTTTG
1484507 TTTTTTTGTT
1 TTTTTTTGTT
*
1484517 ATTTTTTTCTT
1 -TTTTTTTGTT
*
1484528 GGTTTTTTG-T
1 -TTTTTTTGTT
*
1484538 TTTTTTTGGT
1 TTTTTTTGTT
*
1484548 TTTTTCTGTT
1 TTTTTTTGTT
*
1484558 TCTTTTTTATT
1 T-TTTTTTGTT
1484569 TTTT
1 TTTT
1484573 ATTTTTTAGG
Statistics
Matches: 44, Mismatches: 9, Indels: 5
0.76 0.16 0.09
Matches are distributed among these distances:
9 7 0.16
10 14 0.32
11 23 0.52
ACGTcount: A:0.03, C:0.05, G:0.11, T:0.82
Consensus pattern (10 bp):
TTTTTTTGTT
Found at i:1484536 original size:22 final size:20
Alignment explanation
Indices: 1484500--1484544 Score: 63
Period size: 22 Copynumber: 2.1 Consensus size: 20
1484490 ATCTAGACCC
*
1484500 TTTTTTGTTTTTTTGTTATTT
1 TTTTTTGGTTTTTTGTT-TTT
1484521 TTTTCTTGGTTTTTTGTTTTT
1 TTTT-TTGGTTTTTTGTTTTT
1484542 TTT
1 TTT
1484545 GGTTTTTTCT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 10 0.45
22 12 0.55
ACGTcount: A:0.02, C:0.02, G:0.11, T:0.84
Consensus pattern (20 bp):
TTTTTTGGTTTTTTGTTTTT
Found at i:1484564 original size:30 final size:31
Alignment explanation
Indices: 1484499--1484572 Score: 80
Period size: 30 Copynumber: 2.5 Consensus size: 31
1484489 CATCTAGACC
* *
1484499 CTTTTTTG-TTTTTTTGTTATTTTTTTCTTG
1 CTTTTTTGTTTTTTTTGGTATTTTTCTCTTG
* * *
1484529 GTTTTTTGTTTTTTTTGGT-TTTTTCTGTTT
1 CTTTTTTGTTTTTTTTGGTATTTTTCTCTTG
*
1484559 CTTTTTTATTTTTT
1 CTTTTTTGTTTTTT
1484573 ATTTTTTAGG
Statistics
Matches: 36, Mismatches: 7, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
30 27 0.75
31 9 0.25
ACGTcount: A:0.03, C:0.05, G:0.11, T:0.81
Consensus pattern (31 bp):
CTTTTTTGTTTTTTTTGGTATTTTTCTCTTG
Found at i:1484578 original size:28 final size:28
Alignment explanation
Indices: 1484500--1484579 Score: 83
Period size: 28 Copynumber: 2.8 Consensus size: 28
1484490 ATCTAGACCC
1484500 TTTTTTGTTTTTTTGTTATTTTTTTCTTGG
1 TTTTTTG-TTTTTT-TTATTTTTTTCTTGG
**
1484530 TTTTTTGTTTTTTTTGGTTTTTTC-T-G
1 TTTTTTGTTTTTTTTATTTTTTTCTTGG
*
1484556 TTTCTTTTTTATTTTTTATTTTTT
1 TTT-TTTGTT-TTTTTTATTTTTT
1484580 AGGTATGAAG
Statistics
Matches: 43, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
26 4 0.09
27 6 0.14
28 20 0.47
29 6 0.14
30 7 0.16
ACGTcount: A:0.04, C:0.04, G:0.10, T:0.82
Consensus pattern (28 bp):
TTTTTTGTTTTTTTTATTTTTTTCTTGG
Found at i:1486537 original size:19 final size:15
Alignment explanation
Indices: 1486510--1486591 Score: 71
Period size: 19 Copynumber: 5.1 Consensus size: 15
1486500 ATACAAACAG
1486510 AAATTGTATCGATAC
1 AAATTGTATCGATAC
1486525 ATAAATGTTGTATCGATAC
1 --AAA--TTGTATCGATAC
1486544 --ATTGTATCGATAC
1 AAATTGTATCGATAC
1486557 -AATTGTATCGATAC
1 AAATTGTATCGATAC
1486571 ATAAGTGTTGTATCGATAC
1 A-AA---TTGTATCGATAC
1486590 AA
1 AA
1486592 TGTATCGCTA
Statistics
Matches: 57, Mismatches: 0, Indels: 15
0.79 0.00 0.21
Matches are distributed among these distances:
13 12 0.21
14 13 0.23
15 1 0.02
16 2 0.04
17 3 0.05
18 1 0.02
19 25 0.44
ACGTcount: A:0.37, C:0.12, G:0.16, T:0.35
Consensus pattern (15 bp):
AAATTGTATCGATAC
Found at i:1486550 original size:13 final size:13
Alignment explanation
Indices: 1486532--1486572 Score: 73
Period size: 13 Copynumber: 3.1 Consensus size: 13
1486522 TACATAAATG
1486532 TTGTATCGATACA
1 TTGTATCGATACA
1486545 TTGTATCGATACAA
1 TTGTATCGATAC-A
1486559 TTGTATCGATACA
1 TTGTATCGATACA
1486572 T
1 T
1486573 AAGTGTTGTA
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
13 14 0.52
14 13 0.48
ACGTcount: A:0.32, C:0.15, G:0.15, T:0.39
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:1486580 original size:46 final size:46
Alignment explanation
Indices: 1486511--1486598 Score: 158
Period size: 46 Copynumber: 1.9 Consensus size: 46
1486501 TACAAACAGA
*
1486511 AATTGTATCGATACATAAATGTTGTATCGATACATTGTATCGATAC
1 AATTGTATCGATACATAAATGTTGTATCGATACAATGTATCGATAC
*
1486557 AATTGTATCGATACATAAGTGTTGTATCGATACAATGTATCG
1 AATTGTATCGATACATAAATGTTGTATCGATACAATGTATCG
1486599 CTATGAAGCT
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
46 40 1.00
ACGTcount: A:0.34, C:0.12, G:0.17, T:0.36
Consensus pattern (46 bp):
AATTGTATCGATACATAAATGTTGTATCGATACAATGTATCGATAC
Found at i:1486661 original size:13 final size:13
Alignment explanation
Indices: 1486643--1486667 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1486633 ATTACTCAAA
1486643 TGTATCGATACAT
1 TGTATCGATACAT
1486656 TGTATCGATACA
1 TGTATCGATACA
1486668 CTGATCTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:1500343 original size:21 final size:21
Alignment explanation
Indices: 1500313--1500356 Score: 79
Period size: 21 Copynumber: 2.1 Consensus size: 21
1500303 GTTGATAATA
1500313 TGCCTAGGGTCGGTTATTTTG
1 TGCCTAGGGTCGGTTATTTTG
*
1500334 TGCCTGGGGTCGGTTATTTTG
1 TGCCTAGGGTCGGTTATTTTG
1500355 TG
1 TG
1500357 GTGGACGCAA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.07, C:0.14, G:0.36, T:0.43
Consensus pattern (21 bp):
TGCCTAGGGTCGGTTATTTTG
Found at i:1502108 original size:21 final size:21
Alignment explanation
Indices: 1502084--1502130 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
1502074 AAAATAATGG
*
1502084 GAATGAATAGCAAGAAAAAAA
1 GAATGAACAGCAAGAAAAAAA
* *
1502105 GAATGAACATCAATAAAAAAA
1 GAATGAACAGCAAGAAAAAAA
*
1502126 AAATG
1 GAATG
1502131 GCCCTTTCTC
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.66, C:0.06, G:0.15, T:0.13
Consensus pattern (21 bp):
GAATGAACAGCAAGAAAAAAA
Found at i:1506459 original size:71 final size:71
Alignment explanation
Indices: 1506376--1506554 Score: 207
Period size: 71 Copynumber: 2.5 Consensus size: 71
1506366 GATACATTGA
* *
1506376 AGAATGTATCAATAAAGTCATA-CATATATCGATATATTGAAAAATATATCGATACATCTGGGTA
1 AGAATGTATCAATAAAGTCA-AGAATATATCGATACATTGAAAAATATATCGATACATCTGGGTA
1506440 AAAAGAC
65 AAAAGAC
* * * * * * *
1506447 ATAATGTATCAATACATTGAAGAATGTGTCGATACATTGAAAAATATATCGATGCATCTGGGTAA
1 AGAATGTATCAATAAAGTCAAGAATATATCGATACATTGAAAAATATATCGATACATCTGGGTAA
*
1506512 AAAGAT
66 AAAGAC
* * * * *
1506518 AGAATGTATCAATACATTGAAGAATGTATTGATACAT
1 AGAATGTATCAATAAAGTCAAGAATATATCGATACAT
1506555 GCATACATGT
Statistics
Matches: 94, Mismatches: 13, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
70 1 0.01
71 93 0.99
ACGTcount: A:0.44, C:0.10, G:0.16, T:0.30
Consensus pattern (71 bp):
AGAATGTATCAATAAAGTCAAGAATATATCGATACATTGAAAAATATATCGATACATCTGGGTAA
AAAGAC
Found at i:1506496 original size:91 final size:92
Alignment explanation
Indices: 1506310--1506499 Score: 274
Period size: 91 Copynumber: 2.1 Consensus size: 92
1506300 TAACTAGATG
*
1506310 TATCGATATATTGAAAAATATATCGATAAATCTGGGAAAAAAAGACAGAATGTATCGATACATTG
1 TATCGATATATTGAAAAATATATCGATAAATCTGGGAAAAAAAGACAGAATGTATCAATACATTG
* *
1506375 AAGAATGTATCAATAAAGTCATACATA
66 AAGAATGTATCAATAAAGTCAAAAATA
* * *
1506402 TATCGATATATTGAAAAATATATCGATACATCTGGG-TAAAAAGACATAATGTATCAATACATTG
1 TATCGATATATTGAAAAATATATCGATAAATCTGGGAAAAAAAGACAGAATGTATCAATACATTG
* * * * *
1506466 AAGAATGTGTCGATACATTGAAAAATA
66 AAGAATGTATCAATAAAGTCAAAAATA
1506493 TATCGAT
1 TATCGAT
1506500 GCATCTGGGT
Statistics
Matches: 87, Mismatches: 11, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
91 52 0.60
92 35 0.40
ACGTcount: A:0.46, C:0.10, G:0.15, T:0.29
Consensus pattern (92 bp):
TATCGATATATTGAAAAATATATCGATAAATCTGGGAAAAAAAGACAGAATGTATCAATACATTG
AAGAATGTATCAATAAAGTCAAAAATA
Found at i:1506498 original size:20 final size:20
Alignment explanation
Indices: 1506453--1506499 Score: 58
Period size: 20 Copynumber: 2.4 Consensus size: 20
1506443 AGACATAATG
* * *
1506453 TATCAATACATTGAAGAATG
1 TATCGATACATTGAAAAATA
*
1506473 TGTCGATACATTGAAAAATA
1 TATCGATACATTGAAAAATA
1506493 TATCGAT
1 TATCGAT
1506500 GCATCTGGGT
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.43, C:0.11, G:0.15, T:0.32
Consensus pattern (20 bp):
TATCGATACATTGAAAAATA
Found at i:1506543 original size:20 final size:20
Alignment explanation
Indices: 1506518--1506583 Score: 80
Period size: 20 Copynumber: 3.3 Consensus size: 20
1506508 GTAAAAAGAT
*
1506518 AGAATGTATCAATACATTGA
1 AGAATGTATCGATACATTGA
* *
1506538 AGAATGTATTGATACA-TGC
1 AGAATGTATCGATACATTGA
*
1506557 ATACATGTATCGATACATTGA
1 AGA-ATGTATCGATACATTGA
1506578 AGAATG
1 AGAATG
1506584 ATCCTCTTCC
Statistics
Matches: 37, Mismatches: 7, Indels: 4
0.77 0.15 0.08
Matches are distributed among these distances:
19 4 0.11
20 29 0.78
21 4 0.11
ACGTcount: A:0.41, C:0.11, G:0.18, T:0.30
Consensus pattern (20 bp):
AGAATGTATCGATACATTGA
Found at i:1506570 original size:71 final size:71
Alignment explanation
Indices: 1506402--1506554 Score: 252
Period size: 71 Copynumber: 2.2 Consensus size: 71
1506392 GTCATACATA
* *
1506402 TATCGATATATTGAAAAATATATCGATACATCTGGGTAAAAAGACATAATGTATCAATACATTGA
1 TATCGATACATTGAAAAATATATCGATACATCTGGGTAAAAAGACAGAATGTATCAATACATTGA
1506467 AGAATG
66 AGAATG
* * *
1506473 TGTCGATACATTGAAAAATATATCGATGCATCTGGGTAAAAAGATAGAATGTATCAATACATTGA
1 TATCGATACATTGAAAAATATATCGATACATCTGGGTAAAAAGACAGAATGTATCAATACATTGA
1506538 AGAATG
66 AGAATG
*
1506544 TATTGATACAT
1 TATCGATACAT
1506555 GCATACATGT
Statistics
Matches: 75, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
71 75 1.00
ACGTcount: A:0.43, C:0.10, G:0.17, T:0.30
Consensus pattern (71 bp):
TATCGATACATTGAAAAATATATCGATACATCTGGGTAAAAAGACAGAATGTATCAATACATTGA
AGAATG
Found at i:1507104 original size:20 final size:19
Alignment explanation
Indices: 1507079--1507147 Score: 77
Period size: 20 Copynumber: 3.5 Consensus size: 19
1507069 CAGTTTCATA
**
1507079 TATCGATACAATTGAGTATG
1 TATCGATACAA-TGAACATG
1507099 TATCGATACAATGAACATG
1 TATCGATACAATGAACATG
*
1507118 TATCGATACAAAGCATA-ATG
1 TATCGATACAATG-A-ACATG
1507138 TATCGATACA
1 TATCGATACA
1507148 TCTGGATATG
Statistics
Matches: 44, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
19 18 0.41
20 25 0.57
21 1 0.02
ACGTcount: A:0.41, C:0.14, G:0.16, T:0.29
Consensus pattern (19 bp):
TATCGATACAATGAACATG
Found at i:1514663 original size:20 final size:19
Alignment explanation
Indices: 1514638--1514690 Score: 70
Period size: 19 Copynumber: 2.7 Consensus size: 19
1514628 TGCCAGTTTA
**
1514638 ATGTATCGATACAATTGAGT
1 ATGTATCGATACAA-TGAAC
*
1514658 ATGTATTGATACAATGAAC
1 ATGTATCGATACAATGAAC
1514677 ATGTATCGATACAA
1 ATGTATCGATACAA
1514691 AGCATATTGT
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
19 16 0.55
20 13 0.45
ACGTcount: A:0.40, C:0.11, G:0.17, T:0.32
Consensus pattern (19 bp):
ATGTATCGATACAATGAAC
Found at i:1514682 original size:19 final size:19
Alignment explanation
Indices: 1514638--1514728 Score: 76
Period size: 20 Copynumber: 4.6 Consensus size: 19
1514628 TGCCAGTTTA
*
1514638 ATGTATCGATACAATTGAGT
1 ATGTATCGATACAA-TGAAT
* *
1514658 ATGTATTGATACAATGAAC
1 ATGTATCGATACAATGAAT
* *
1514677 ATGTATCGATACAAAGCAT
1 ATGTATCGATACAATGAAT
* *
1514696 ATTGTATTGATAC-ATCTAGAT
1 A-TGTATCGATACAAT-GA-AT
1514717 ATGTATCGATAC
1 ATGTATCGATAC
1514729 TTTCAAGTGT
Statistics
Matches: 56, Mismatches: 12, Indels: 6
0.76 0.16 0.08
Matches are distributed among these distances:
19 20 0.36
20 33 0.59
21 3 0.05
ACGTcount: A:0.37, C:0.12, G:0.16, T:0.34
Consensus pattern (19 bp):
ATGTATCGATACAATGAAT
Found at i:1514707 original size:20 final size:19
Alignment explanation
Indices: 1514658--1514709 Score: 59
Period size: 19 Copynumber: 2.7 Consensus size: 19
1514648 ACAATTGAGT
*
1514658 ATGTATTGATACAATGAAC
1 ATGTATTGATACAAAGAAC
* * *
1514677 ATGTATCGATACAAAGCAT
1 ATGTATTGATACAAAGAAC
1514696 ATTGTATTGATACA
1 A-TGTATTGATACA
1514710 TCTAGATATG
Statistics
Matches: 27, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
19 16 0.59
20 11 0.41
ACGTcount: A:0.40, C:0.12, G:0.15, T:0.33
Consensus pattern (19 bp):
ATGTATTGATACAAAGAAC
Found at i:1523777 original size:165 final size:163
Alignment explanation
Indices: 1523585--1524278 Score: 608
Period size: 165 Copynumber: 4.2 Consensus size: 163
1523575 AGGGGAGTTT
* * * * *
1523585 AATAATAATATTAGATGAATTTTAAAAATTAGAAACCAAGAAAAGTCCCCCTAAAAATATTTATG
1 AATAATGATATTTGATGAATTTTAAAAATTAAAAACCAAGAAAAATCCCCCTAAAAA-ATTTACG
* * * *
1523650 GAATAAAAAATTTCGTATTTCAAAAATAAGGGAATTTCAAAGAAAAATTCAAAACTCATGAAAAT
65 GAATAAAAAACTCCATATTTCAAAAA-AAGGGAATTTCAAAGAAAAAATCAAAACTCATGAAAAT
* * * *
1523715 GATTGAATTTTTCAAAACTGA-TGTATCATGAATCA
129 GAATGAATTTTTAAAAACTGATTTTAT-ATGAATTA
* * * * *
1523750 AATAATGATATTTGATGAATATTAAAAATTAAAAACCAAAAAAAATCCCCCCAAAAAAATTATGG
1 AATAATGATATTTGATGAATTTTAAAAATTAAAAACCAAGAAAAATCCCCCTAAAAAATTTACGG
* * *
1523815 AGA-AGAAAACTCCATATTT-AGGAAACAAAGGGAATTTCAAA-AAAAAATCAAAAATGAATGAA
66 A-ATAAAAAACTCCATATTTCA--AAA-AAAGGGAATTTCAAAGAAAAAATCAAAACT-CATGAA
* * *
1523877 AAGGAATGAATTTTTGAAAACTGATTTTATTTGAATTA
126 AATGAATGAATTTTTAAAAACTGATTTTATATGAATTA
* * * **
1523915 AATGATGATATTTTATGAGTTTTAAAAATTAAAAACCAAGAAAAAT-CCTTTCAAAAAATTTACG
1 AATAATGATATTTGATGAATTTTAAAAATTAAAAACCAAGAAAAATCCCCCT-AAAAAATTTACG
** * * * ** *
1523979 GAATTGAAAACTCCGTATTTTGGAAACAAAGATAATTTCAAAGAAAAAAATAAATAACTCATGAA
65 GAATAAAAAACTCCATA-TTT-CAAAAAAAGGGAATTTCAAAG-AAAAAATCAA-AACTCATGAA
* *
1524044 AATGAATGAATTTTTAAAAACTCATTTTATGTGAATTA
126 AATGAATGAATTTTTAAAAACTGATTTTATATGAATTA
** * *
1524082 AATGCTGATATTTTATGAATTTTAAAAATTAAAAACCAAGAAAAATCCTTCC-AAAAATATTTAC
1 AATAATGATATTTGATGAATTTTAAAAATTAAAAACCAAGAAAAATCC-CCCTAAAAA-ATTTAC
* * * * * * * * *
1524146 GCAGTAAAAAACTCTATATTTCAGAAATAGGGGAATTTCAAGGAAAAAATTAAAAAATTACTGAA
64 GGAATAAAAAACTCCATATTTCA-AAAAAAGGGAATTTCAAAGAAAAAA-TCAAAACTCA-TGAA
*** ** * * *
1524211 AATTTGTGAATTTTTGCAAACTAATTTAATATAAATTA
126 AATGAATGAATTTTTAAAAACTGATTTTATATGAATTA
* * * *
1524249 AATAATAATATTTAACGAATTTTACAAATT
1 AATAATGATATTTGATGAATTTTAAAAATT
1524279 TGAAATCGAT
Statistics
Matches: 431, Mismatches: 78, Indels: 38
0.79 0.14 0.07
Matches are distributed among these distances:
163 1 0.00
164 35 0.08
165 177 0.41
166 21 0.05
167 174 0.40
168 23 0.05
ACGTcount: A:0.50, C:0.09, G:0.11, T:0.30
Consensus pattern (163 bp):
AATAATGATATTTGATGAATTTTAAAAATTAAAAACCAAGAAAAATCCCCCTAAAAAATTTACGG
AATAAAAAACTCCATATTTCAAAAAAAGGGAATTTCAAAGAAAAAATCAAAACTCATGAAAATGA
ATGAATTTTTAAAAACTGATTTTATATGAATTA
Found at i:1524107 original size:167 final size:167
Alignment explanation
Indices: 1523599--1524278 Score: 637
Period size: 167 Copynumber: 4.1 Consensus size: 167
1523589 ATAATATTAG
* * * * * *
1523599 ATGAATTTTAAAAATTAGAAACCAAGAAAAGTCC-CCCTAAAAATATTTATGGAATAAAAAATTT
1 ATGAATTTTAAAAATTAAAAACCAAGAAAAATCCTCCC-AAAAATATTTACGGAATAGAAAACTC
* * * * *
1523663 CGTA-TTT-CAAAAATAAGGGAATTTCAAAG-AAAAATTCAAAACTCATGAAAATGATTGAATTT
65 CGTATTTTGGAAACA-AAGGGAATTTCAAAGAAAAAAATAAAAACTCATGAAAATGAATGAATTT
* * * * *
1523725 TTCAAAACTGA-TGTATCATGAATCAAATAATGATATTTG
129 TTAAAAACTGATTTTAT-ATGAATTAAATGATGATATTTT
* * * * *
1523764 ATGAATATTAAAAATTAAAAACCAAAAAAAATCCCCCCAAAAA-AATTATGGAGA-AGAAAACTC
1 ATGAATTTTAAAAATTAAAAACCAAGAAAAATCCTCCCAAAAATATTTACGGA-ATAGAAAACTC
* * * *
1523827 CATATTTAGGAAACAAAGGGAATTTC-AA-AAAAAAATCAAAAA-TGAATGAAAAGGAATGAATT
65 CGTATTTTGGAAACAAAGGGAATTTCAAAGAAAAAAAT-AAAAACT-CATGAAAATGAATGAATT
* *
1523889 TTTGAAAACTGATTTTATTTGAATTAAATGATGATATTTT
128 TTTAAAAACTGATTTTATATGAATTAAATGATGATATTTT
* ** *
1523929 ATGAGTTTTAAAAATTAAAAACCAAGAAAAATCCTTTCAAAAA-ATTTACGGAATTGAAAACTCC
1 ATGAATTTTAAAAATTAAAAACCAAGAAAAATCCTCCCAAAAATATTTACGGAATAGAAAACTCC
**
1523993 GTATTTTGGAAACAAAGATAATTTCAAAGAAAAAAATAAATAACTCATGAAAATGAATGAATTTT
66 GTATTTTGGAAACAAAGGGAATTTCAAAGAAAAAAATAAA-AACTCATGAAAATGAATGAATTTT
* * *
1524058 TAAAAACTCATTTTATGTGAATTAAATGCTGATATTTT
130 TAAAAACTGATTTTATATGAATTAAATGATGATATTTT
* * * * *
1524096 ATGAATTTTAAAAATTAAAAACCAAGAAAAATCCTTCCAAAAATATTTACGCAGTAAAAAACTCT
1 ATGAATTTTAAAAATTAAAAACCAAGAAAAATCCTCCCAAAAATATTTACGGAATAGAAAACTCC
* ** * * * * * * ***
1524161 ATATTTCAGAAA-TAGGGGAATTTCAAGGAAAAAATTAAAAAATTACTGAAAATTTGTGAATTTT
66 GTATTTTGGAAACAAAGGGAATTTCAAAGAAAAAAATAAAAACTCA-TGAAAATGAATGAATTTT
** * * * * * *
1524225 TGCAAACTAATTTAATATAAATTAAATAATAATATTTA
130 TAAAAACTGATTTTATATGAATTAAATGATGATATTTT
* *
1524263 ACGAATTTTACAAATT
1 ATGAATTTTAAAAATT
1524279 TGAAATCGAT
Statistics
Matches: 425, Mismatches: 75, Indels: 28
0.80 0.14 0.05
Matches are distributed among these distances:
164 27 0.06
165 171 0.40
166 20 0.05
167 181 0.43
168 26 0.06
ACGTcount: A:0.49, C:0.10, G:0.11, T:0.30
Consensus pattern (167 bp):
ATGAATTTTAAAAATTAAAAACCAAGAAAAATCCTCCCAAAAATATTTACGGAATAGAAAACTCC
GTATTTTGGAAACAAAGGGAATTTCAAAGAAAAAAATAAAAACTCATGAAAATGAATGAATTTTT
AAAAACTGATTTTATATGAATTAAATGATGATATTTT
Found at i:1524369 original size:332 final size:330
Alignment explanation
Indices: 1523585--1524377 Score: 750
Period size: 332 Copynumber: 2.4 Consensus size: 330
1523575 AGGGGAGTTT
* * * **
1523585 AATAATAATA-TTAGATGAATTTTAAAAATTAGAAACCAAGAAAAGTCC-CCCTAAAAATATTTA
1 AATAATAATATTTA-ACGAATTTTAAAAATTAAAAACCAAGAAAAATCCTTTC-AAAAA-ATTTA
* * * * * * * *
1523648 TGGAATAAAAAATTTCGTA-TTT-CAAAAATAAGGGAATTTCAAAGAA-AAATTCAA-AACTCAT
63 AGGAAT-GAAAACTCCGTATTTTGGAAACA-AAGAGAATTTCAAA-AAGAAAATCAATAACTCAT
* * *
1523709 GAAAATGATTGAATTTTTCAAAACTGATGTATCATGAATCAAATAATGATATTTGATGAATATTA
125 GAAAATGAATGAATTTTTAAAAACTCATGTATCATGAATCAAATAATGATATTTGATGAATATTA
* *
1523774 AAAATTAAAAACCAAAAAAAATCCCCCCAAAAAAATTATGGAGAAGAAAACTCCATATTTAGGAA
190 AAAATTAAAAACCAAAAAAAATCCCCCCAAAAAAATTACGCAGAAGAAAACTCCATATTTAGGAA
* *
1523839 ACAAAGGGAATTTCAAAAAAAAATCAAAAATGAATGAAAAGGAATGAATTTTTGAAAACTGATTT
255 ACAAAGGGAATTTCAAAAAAAAATAAAAAATGAATGAAAAGGAATGAATTTTTGAAAACTAATTT
* * *
1523904 TATTTGAATTA
320 AATATAAATTA
* * * * * *
1523915 AATGATGATATTTTATGAGTTTTAAAAATTAAAAACCAAGAAAAATCCTTTCAAAAAATTTACGG
1 AATAATAATATTTAACGAATTTTAAAAATTAAAAACCAAGAAAAATCCTTTCAAAAAATTTAAGG
* * *
1523980 AATTGAAAACTCCGTATTTTGGAAACAAAGATAATTTCAAAGAAAAAAATAAATAACTCATGAAA
66 AA-TGAAAACTCCGTATTTTGGAAACAAAGAGAATTTCAAA-AAGAAAATCAATAACTCATGAAA
* * * ** * *
1524045 ATGAATGAATTTTTAAAAACTCATTTTAT-GTGAATTAAATGCTGATATTTTATGAATTTTAAAA
129 ATGAATGAATTTTTAAAAACTCA-TGTATCATGAATCAAATAATGATATTTGATGAATATTAAAA
* ** * *
1524109 ATTAAAAACCAAGAAAAATCCTTCCAAAAATATTTACGCAGTAA-AAAACTCTATATTTCA-GAA
193 ATTAAAAACCAAAAAAAATCCCCCCAAAAA-AATTACGCAG-AAGAAAACTCCATATTT-AGGAA
* * * * * **** *
1524172 A-TAGGGGAATTTCAAGGAAAAAATTAAAAAATTACTGAAAATTTGTGAATTTTTGCAAACTAAT
255 ACAAAGGGAATTTCAA--AAAAAAATAAAAAATGAATGAAAAGGAATGAATTTTTGAAAACTAAT
1524236 TTAATATAAATTA
318 TTAATATAAATTA
* ** * * ** *
1524249 AATAATAATATTTAACGAATTTTACAAATTTGAAATCGATTAAAATCCTCTTGAAAAAATTTATA
1 AATAATAATATTTAACGAATTTTAAAAATTAAAAACCAAGAAAAATCCT-TTCAAAAAATTTA-A
* * *
1524314 GAGAA-GAAAACTCTGTATTTTGGAAAC-AAGAGGA-TTCTAAAAGAAAATCAATAACTCAT-AA
64 G-GAATGAAAACTCCGTATTTTGGAAACAAAGAGAATTTCAAAAAGAAAATCAATAACTCATGAA
1524375 AAT
128 AAT
1524378 AAGAGGAATT
Statistics
Matches: 377, Mismatches: 70, Indels: 31
0.79 0.15 0.06
Matches are distributed among these distances:
329 18 0.05
330 63 0.17
331 18 0.05
332 116 0.31
333 33 0.09
334 92 0.24
335 33 0.09
336 1 0.00
337 3 0.01
ACGTcount: A:0.49, C:0.10, G:0.11, T:0.30
Consensus pattern (330 bp):
AATAATAATATTTAACGAATTTTAAAAATTAAAAACCAAGAAAAATCCTTTCAAAAAATTTAAGG
AATGAAAACTCCGTATTTTGGAAACAAAGAGAATTTCAAAAAGAAAATCAATAACTCATGAAAAT
GAATGAATTTTTAAAAACTCATGTATCATGAATCAAATAATGATATTTGATGAATATTAAAAATT
AAAAACCAAAAAAAATCCCCCCAAAAAAATTACGCAGAAGAAAACTCCATATTTAGGAAACAAAG
GGAATTTCAAAAAAAAATAAAAAATGAATGAAAAGGAATGAATTTTTGAAAACTAATTTAATATA
AATTA
Found at i:1526291 original size:84 final size:83
Alignment explanation
Indices: 1525633--1526745 Score: 532
Period size: 84 Copynumber: 13.3 Consensus size: 83
1525623 GAGCCGACTA
* * * * * *
1525633 GCAGACAAAGGATAAAGAAA-TTTCCTAGGTCTTAGCCAATAGGTAGACAAAGGATAAAGAAGTC
1 GCAGACAAAAGATAAA-AAAGTCTCCTAGGTCTGAGCCGA-CGGTAGACAAAAGATAAAGAAGTC
* ** **
1525697 TC-CTAGGTCTGAGCTAACAG
64 TCTC-GGGTCTGAGCCGATGG
** * * * * * * * *
1525717 GCAGACAAAAGACGAAGAAGTCTCCTAGGTCTAAACTGACGAGTTGACAAATGGTAAAGAAGTTT
1 GCAGACAAAAGATAAAAAAGTCTCCTAGGTCTGAGCCGACG-GTAGACAAAAGATAAAGAAGTCT
* *
1525782 C-CTAGGTCTGAGCCGACGG
65 CTC-GGGTCTGAGCCGATGG
* * ** * *
1525801 GCTGACAAAAGATAAAAAAGTCTCCCAGGTCTGAGTTGACTGGTAAACAAAGGATAAAGAAGTCT
1 GCAGACAAAAGATAAAAAAGTCTCCTAGGTCTGAGCCGAC-GGTAGACAAAAGATAAAGAAGTCT
** **
1525866 C-CAAG-CTTGAGCCGACAG
65 CTCGGGTC-TGAGCCGATGG
* * * *
1525884 GCAGACAAAAGATAAAAAAGTCTACC-AGG-CTTGAGCCGACGGGTAAATAAAAGATGAAGAAAT
1 GCAGACAAAAGATAAAAAAGTCT-CCTAGGTC-TGAGCCGAC-GGTAGACAAAAGATAAAGAAGT
* * * * *
1525947 CTTTTGGGTCTAAGCCAATGA
63 CTCTCGGGTCTGAGCCGATGG
** * * * ** *
1525968 GTTGTCAAATGATAAAAAAGTCACCTAGGTCTGAGCCGACAGACAGACAAAAGATGAAGAAGTCT
1 GCAGACAAAAGATAAAAAAGTCTCCTAGGTCTGAGCCGAC-GGTAGACAAAAGATAAAGAAGTCT
* * *
1526033 CCTAGGCT-TGAGCCGACGG
65 -CTCGGGTCTGAGCCGATGG
** * * * ** * *
1526052 GTTGACAAAGGATATAGAAGTCTTCC-AGGTCTGAGCTAACGAGCAGACAAAAGATAAAGAAATC
1 GCAGACAAAAGATAAAAAAGTC-TCCTAGGTCTGAGCCGACG-GTAGACAAAAGATAAAGAAGTC
** *
1526116 TCTTAGGTCTGAGTCGATGG
64 TCTCGGGTCTGAGCCGATGG
* * ** * *
1526136 GCAGACAAAAGATGAAGAAGTCTCCTAGGTCTGAGTTGACGTTTAGACAAAAGATATAGAAGTCT
1 GCAGACAAAAGATAAAAAAGTCTCCTAGGTCTGAGCCGACG-GTAGACAAAAGATAAAGAAGTCT
*
1526201 CCCGGGTCTGAGCCGATGG
65 CTCGGGTCTGAGCCGATGG
* * *
1526220 GTAGACAAAAGATAAAGAAGTCTCCTAGGTCTGAGCCGACAGGTAGACAAAGGATAAAGAAGTCT
1 GCAGACAAAAGATAAAAAAGTCTCCTAGGTCTGAGCCGAC-GGTAGACAAAAGATAAAGAAGTCT
* *
1526285 CTCGGGTCTAAGTCGATGG
65 CTCGGGTCTGAGCCGATGG
* * * * *** * * * *
1526304 GCCGACAAATGATAAAAAAGTCT-CTCGAGTCTAAATTGATGGGAAAACAAAAGATGAAGAAGTC
1 GCAGACAAAAGATAAAAAAGTCTCCTAG-GTCTGAGCCGA-CGGTAGACAAAAGATAAAGAAGTC
* ** **
1526368 TTTCATG-CTTGAGTTGATGG
64 TCTCGGGTC-TGAGCCGATGG
* * * * * ** * * *
1526388 CCAGACAAAGGATATAGAAGTCTCC-AGAGTTTGAGCTAATGGGTAAACAAAAGATAAAAAAGTC
1 GCAGACAAAAGATAAAAAAGTCTCCTAG-GTCTGAGCCGA-CGGTAGACAAAAGATAAAGAAGTC
** * *
1526452 TC-CTAGACTGAGCCGACGG
64 TCTCGGGTCTGAGCCGATGG
* * * * * * * * * *
1526471 CCAGATAAAGGATAAAACAGTCT-TTCGAGCCTAAACCGACGAGCAGACAAAAGATAAAGAAGTC
1 GCAGACAAAAGATAAAAAAGTCTCCTAG-GTCTGAGCCGACG-GTAGACAAAAGATAAAGAAGTC
*
1526535 TCT-GAGG-CTTGAGCTGATGG
64 TCTCG-GGTC-TGAGCCGATGG
* * * * * * * * * * *
1526555 GAAAACAAAAGATAAAAAAGTCTCC-CGAATTTAAGCCAATGGGCAAACAAAAGATATAGAAGTC
1 GCAGACAAAAGATAAAAAAGTCTCCTAG-GTCTGAGCCGA-CGGTAGACAAAAGATAAAGAAGTC
* * *
1526619 TCTCGGGTCTGAGCTGACGA
64 TCTCGGGTCTGAGCCGATGG
* * * * * * * * *
1526639 GTAGACAAAAGATAAATAAGTCTCCCAAGTCTAAGTCGATGGATAGACAAAGGATAGAGAAGTCT
1 GCAGACAAAAGATAAAAAAGTCTCCTAGGTCTGAGCCGACGG-TAGACAAAAGATAAAGAAGTCT
* * *
1526704 TTCGAGTCTGAGTCGATGG
65 CTCGGGTCTGAGCCGATGG
* * *
1526723 GTAAACAAAAAATAAAAAAGTCT
1 GCAGACAAAAGATAAAAAAGTCT
1526746 GGAGTAAGAC
Statistics
Matches: 790, Mismatches: 207, Indels: 64
0.74 0.20 0.06
Matches are distributed among these distances:
82 3 0.00
83 141 0.18
84 632 0.80
85 14 0.02
ACGTcount: A:0.38, C:0.17, G:0.25, T:0.20
Consensus pattern (83 bp):
GCAGACAAAAGATAAAAAAGTCTCCTAGGTCTGAGCCGACGGTAGACAAAAGATAAAGAAGTCTC
TCGGGTCTGAGCCGATGG
Found at i:1526293 original size:42 final size:41
Alignment explanation
Indices: 1525605--1526285 Score: 421
Period size: 42 Copynumber: 16.2 Consensus size: 41
1525595 CAAAGAGGTG
* * *
1525605 AAGAAGTCTCCCAAG-CTTGAGCCGACTA-GCAGACAAAGGATA
1 AAGAAGTCT-CCAGGTC-TGAGCCGAC-AGGTAGACAAAAGATA
* * * * * *
1525647 AAGAAATTTCCTAGGTCTTAGCCAATAGGTAGACAAAGGATA
1 AAGAAGTCTCC-AGGTCTGAGCCGACAGGTAGACAAAAGATA
** * **
1525689 AAGAAGTCTCCTAGGTCTGAGCTAACAGGCAGACAAAAGACG
1 AAGAAGTCTCC-AGGTCTGAGCCGACAGGTAGACAAAAGATA
* * * * * *
1525731 AAGAAGTCTCCTAGGTCTAAACTGAC-GAGTTGACAAATGGTA
1 AAGAAGTCTCC-AGGTCTGAGCCGACAG-GTAGACAAAAGATA
* *
1525773 AAGAAGTTTCCTAGGTCTGAGCCGACGGGCT-GACAAAAGATA
1 AAGAAGTCTCC-AGGTCTGAGCCGACAGG-TAGACAAAAGATA
* ** * * *
1525815 AAAAAGTCTCCCAGGTCTGAGTTGACTGGTAAACAAAGGATA
1 AAGAAGTCT-CCAGGTCTGAGCCGACAGGTAGACAAAAGATA
* *
1525857 AAGAAGTCTCCAAG-CTTGAGCCGACAGGCAGACAAAAGATA
1 AAGAAGTCTCCAGGTC-TGAGCCGACAGGTAGACAAAAGATA
* * * * *
1525898 AAAAAGTCTACCAGG-CTTGAGCCGACGGGTAAATAAAAGATG
1 AAGAAGTCT-CCAGGTC-TGAGCCGACAGGTAGACAAAAGATA
* *** * * * *
1525940 AAGAAATCTTTTGGGTCTAAGCC-A-ATGAGTTGTCAAATGATA
1 AAGAAGTC-TCCAGGTCTGAGCCGACA-G-GTAGACAAAAGATA
* * ** *
1525982 AAAAAGTCACCTAGGTCTGAGCCGACAGACAGACAAAAGATG
1 AAGAAGTCTCC-AGGTCTGAGCCGACAGGTAGACAAAAGATA
* * *
1526024 AAGAAGTCTCCTAGG-CTTGAGCCGACGGGTTGACAAAGGATA
1 AAGAAGTCTCC-AGGTC-TGAGCCGACAGGTAGACAAAAGATA
* ** *
1526066 TAGAAGTCTTCCAGGTCTGAGCTAAC-GAGCAGACAAAAGATA
1 AAGAAGTC-TCCAGGTCTGAGCCGACAG-GTAGACAAAAGATA
* * * ** * *
1526108 AAGAAATCTCTTAGGTCTGAGTCGATGGGCAGACAAAAGATG
1 AAGAAGTCTC-CAGGTCTGAGCCGACAGGTAGACAAAAGATA
** *
1526150 AAGAAGTCTCCTAGGTCTGAGTTGAC-GTTTAGACAAAAGATA
1 AAGAAGTCTCC-AGGTCTGAGCCGACAG-GTAGACAAAAGATA
* * **
1526192 TAGAAGTCTCCCGGGTCTGAGCCGATGGGTAGACAAAAGATA
1 AAGAAGTCT-CCAGGTCTGAGCCGACAGGTAGACAAAAGATA
*
1526234 AAGAAGTCTCCTAGGTCTGAGCCGACAGGTAGACAAAGGATA
1 AAGAAGTCTCC-AGGTCTGAGCCGACAGGTAGACAAAAGATA
1526276 AAGAAGTCTC
1 AAGAAGTCTC
1526286 TCGGGTCTAA
Statistics
Matches: 492, Mismatches: 119, Indels: 56
0.74 0.18 0.08
Matches are distributed among these distances:
40 1 0.00
41 45 0.09
42 428 0.87
43 17 0.03
44 1 0.00
ACGTcount: A:0.37, C:0.18, G:0.26, T:0.19
Consensus pattern (41 bp):
AAGAAGTCTCCAGGTCTGAGCCGACAGGTAGACAAAAGATA
Found at i:1526311 original size:42 final size:42
Alignment explanation
Indices: 1525674--1526745 Score: 388
Period size: 42 Copynumber: 25.6 Consensus size: 42
1525664 TTAGCCAATA
* * **
1525674 GGTAGACAAAGGATAAAGAAGTCTC-CTAGGTCTGAG-CTAACA
1 GGTAGACAAAAGATAAAGAAGTCTCTC-AGGTCTGAGTC-GATG
* ** ** *
1525716 GGCAGACAAAAGACGAAGAAGTCTC-CTAGGTCT-AAACTGACG
1 GGTAGACAAAAGATAAAGAAGTCTCTC-AGGTCTGAGTC-GATG
* * * * * * *
1525758 AGTTGACAAATGGTAAAGAAGTTTC-CTAGGTCTGAGCCGACG
1 GGTAGACAAAAGATAAAGAAGTCTCTC-AGGTCTGAGTCGATG
* * *
1525800 GGCT-GACAAAAGATAAAAAAGTCTCCCAGGTCTGAGTTGACT-
1 GG-TAGACAAAAGATAAAGAAGTCTCTCAGGTCTGAGTCGA-TG
* * * * **
1525842 GGTAAACAAAGGATAAAGAAGTCTC-CAAG-CTTGAGCCGACA
1 GGTAGACAAAAGATAAAGAAGTCTCTCAGGTC-TGAGTCGATG
* * * *
1525883 GGCAGACAAAAGATAAAAAAGTCTAC-CAGG-CTTGAGCCGACG
1 GGTAGACAAAAGATAAAGAAGTCT-CTCAGGTC-TGAGTCGATG
* * * * * ** * * *
1525925 GGTAAATAAAAGATGAAGAAATCTTTTGGGTCTAAGCCAATG
1 GGTAGACAAAAGATAAAGAAGTCTCTCAGGTCTGAGTCGATG
* * * * * * * **
1525967 AGTTGTCAAATGATAAAAAAGTCAC-CTAGGTCTGAGCCGACA
1 GGTAGACAAAAGATAAAGAAGTCTCTC-AGGTCTGAGTCGATG
** * * *
1526009 GACAGACAAAAGATGAAGAAGTCTC-CTAGG-CTTGAGCCGACG
1 GGTAGACAAAAGATAAAGAAGTCTCTC-AGGTC-TGAGTCGATG
* * * * *
1526051 GGTTGACAAAGGATATAGAAGTCT-TCCAGGTCTGAG-CTAACG
1 GGTAGACAAAAGATAAAGAAGTCTCT-CAGGTCTGAGTC-GATG
* * * *
1526093 AGCAGACAAAAGATAAAGAAATCTCTTAGGTCTGAGTCGATG
1 GGTAGACAAAAGATAAAGAAGTCTCTCAGGTCTGAGTCGATG
* * * *
1526135 GGCAGACAAAAGATGAAGAAGTCTC-CTAGGTCTGAGTTGACG
1 GGTAGACAAAAGATAAAGAAGTCTCTC-AGGTCTGAGTCGATG
** * * * *
1526177 TTTAGACAAAAGATATAGAAGTCTCCCGGGTCTGAGCCGATG
1 GGTAGACAAAAGATAAAGAAGTCTCTCAGGTCTGAGTCGATG
* **
1526219 GGTAGACAAAAGATAAAGAAGTCTC-CTAGGTCTGAGCCGACA
1 GGTAGACAAAAGATAAAGAAGTCTCTC-AGGTCTGAGTCGATG
* * *
1526261 GGTAGACAAAGGATAAAGAAGTCTCTCGGGTCTAAGTCGATG
1 GGTAGACAAAAGATAAAGAAGTCTCTCAGGTCTGAGTCGATG
** * * * * *
1526303 GGCCGACAAATGATAAAAAAGTCTCTC-GAGTCTAAATTGATG
1 GGTAGACAAAAGATAAAGAAGTCTCTCAG-GTCTGAGTCGATG
* * * * * *
1526345 GGAAAACAAAAGATGAAGAAGTCTTTCATG-CTTGAGTTGATG
1 GGTAGACAAAAGATAAAGAAGTCTCTCAGGTC-TGAGTCGATG
** * * * *
1526387 GCCAGACAAAGGATATAGAAGTCTC-CAGAGTTTGAG-CTAATG
1 GGTAGACAAAAGATAAAGAAGTCTCTCAG-GTCTGAGTC-GATG
* * * * *
1526429 GGTAAACAAAAGATAAAAAAGTCTC-CTA-GACTGAGCCGACG
1 GGTAGACAAAAGATAAAGAAGTCTCTC-AGGTCTGAGTCGATG
** * * * * * ** *
1526470 GCCAGATAAAGGATAAA-ACAGTCTTTC-GAGCCTAAACCGACG
1 GGTAGACAAAAGATAAAGA-AGTCTCTCAG-GTCTGAGTCGATG
* * *
1526512 AGCAGACAAAAGATAAAGAAGTCTCTGAGG-CTTGAG-CTGATG
1 GGTAGACAAAAGATAAAGAAGTCTCTCAGGTC-TGAGTC-GATG
* * * * * * * * *
1526554 GGAAAACAAAAGATAAAAAAGTCTC-CCGAATTTAAGCCAATG
1 GGTAGACAAAAGATAAAGAAGTCTCTCAG-GTCTGAGTCGATG
* * * * *
1526596 GGCAAACAAAAGATATAGAAGTCTCTCGGGTCTGAG-CTGACG
1 GGTAGACAAAAGATAAAGAAGTCTCTCAGGTCTGAGTC-GATG
* * * * *
1526638 AGTAGACAAAAGATAAATAAGTCTCCCAAGTCTAAGTCGATG
1 GGTAGACAAAAGATAAAGAAGTCTCTCAGGTCTGAGTCGATG
* * * *
1526680 GATAGACAAAGGATAGAGAAGTCTTTC-GAGTCTGAGTCGATG
1 GGTAGACAAAAGATAAAGAAGTCTCTCAG-GTCTGAGTCGATG
* * *
1526722 GGTAAACAAAAAATAAAAAAGTCT
1 GGTAGACAAAAGATAAAGAAGTCT
1526746 GGAGTAAGAC
Statistics
Matches: 765, Mismatches: 219, Indels: 92
0.71 0.20 0.09
Matches are distributed among these distances:
40 2 0.00
41 66 0.09
42 679 0.89
43 18 0.02
ACGTcount: A:0.38, C:0.17, G:0.25, T:0.20
Consensus pattern (42 bp):
GGTAGACAAAAGATAAAGAAGTCTCTCAGGTCTGAGTCGATG
Found at i:1526311 original size:126 final size:125
Alignment explanation
Indices: 1525605--1526703 Score: 555
Period size: 126 Copynumber: 8.7 Consensus size: 125
1525595 CAAAGAGGTG
* * * * * *
1525605 AAGAAGTCTCCCAAG-CTTGAGCCGACTA-GCAGACAAAGGATAAAGAAATTTCCTAGGTCTTAG
1 AAGAAGTCTCCTAGGTC-TGAGCCGAC-AGGCAGACAAAAGATAAAGAAGTCTCC-AGGTCTGAG
* ** * * ** * **
1525668 CCAATAGGTAGACAAAGGATAAAGAAGTCTCCTAGGTCTGAGCTAACAGGCAGACAAAAGACG
63 CCGACGGGTAGACAAAAGATAAAGAAGTCTCCCAGGTCTGAGCTAATGGGTAGACAAAAGATA
* * * ** * * *
1525731 AAGAAGTCTCCTAGGTCTAAACTGAC-GAGTTGACAAATGGTAAAGAAGTTTCCTAGGTCTGAGC
1 AAGAAGTCTCCTAGGTCTGAGCCGACAG-GCAGACAAAAGATAAAGAAGTCTCC-AGGTCTGAGC
* * * * *
1525795 CGACGGGCT-GACAAAAGATAAAAAAGTCTCCCAGGTCTGAGTTGACT-GGTAAACAAAGGATA
64 CGACGGG-TAGACAAAAGATAAAGAAGTCTCCCAGGTCTGAGCT-AATGGGTAGACAAAAGATA
* * *
1525857 AAGAAGTCTCCAAGCT-TGAGCCGACAGGCAGACAAAAGATAAAAAAGTCTACCAGG-CTTGAGC
1 AAGAAGTCTCCTAGGTCTGAGCCGACAGGCAGACAAAAGATAAAGAAGTCT-CCAGGTC-TGAGC
* * * * **** * * * * * *
1525920 CGACGGGTAAATAAAAGATGAAGAAATCTTTTGGGTCTAAGCCAATGAGTTGTCAAATGATA
64 CGACGGGTAGACAAAAGATAAAGAAGTCTCCCAGGTCTGAGCTAATGGGTAGACAAAAGATA
* * * *
1525982 AAAAAGTCACCTAGGTCTGAGCCGACAGACAGACAAAAGATGAAGAAGTCTCCTAGG-CTTGAGC
1 AAGAAGTCTCCTAGGTCTGAGCCGACAGGCAGACAAAAGATAAAGAAGTCTCC-AGGTC-TGAGC
* * * * * * *
1526046 CGACGGGTTGACAAAGGATATAGAAGTCTTCCAGGTCTGAGCTAACGAGCAGACAAAAGATA
64 CGACGGGTAGACAAAAGATAAAGAAGTCTCCCAGGTCTGAGCTAATGGGTAGACAAAAGATA
* * * ** * **
1526108 AAGAAATCTCTTAGGTCTGAGTCGATGGGCAGACAAAAGATGAAGAAGTCTCCTAGGTCTGAGTT
1 AAGAAGTCTCCTAGGTCTGAGCCGACAGGCAGACAAAAGATAAAGAAGTCTCC-AGGTCTGAGCC
** * * **
1526173 GACGTTTAGACAAAAGATATAGAAGTCTCCCGGGTCTGAGCCGATGGGTAGACAAAAGATA
65 GACGGGTAGACAAAAGATAAAGAAGTCTCCCAGGTCTGAGCTAATGGGTAGACAAAAGATA
* * * * *
1526234 AAGAAGTCTCCTAGGTCTGAGCCGACAGGTAGACAAAGGATAAAGAAGTCTCTCGGGTCTAAGTC
1 AAGAAGTCTCCTAGGTCTGAGCCGACAGGCAGACAAAAGATAAAGAAGTCTC-CAGGTCTGAGCC
* ** * * * * ** * * * *
1526299 GATGGGCCGACAAATGATAAAAAAGTCTCTC-GAGTCTAAATTGATGGGAAAACAAAAGATG
65 GACGGGTAGACAAAAGATAAAGAAGTCTCCCAG-GTCTGAGCTAATGGGTAGACAAAAGATA
* * ** * * * *
1526360 AAGAAGTCT-TTCATG-CTTGAGTTGA-TGGCCAGACAAAGGATATAGAAGTCTCCAGAGTTTGA
1 AAGAAGTCTCCT-AGGTC-TGAGCCGACAGG-CAGACAAAAGATAAAGAAGTCTCCAG-GTCTGA
** * * * * * ** * ** * *
1526422 GCTAATGGGTAAACAAAAGATAAAAAAGTCTCCTA-GACTGAGCCGACGGCCAGATAAAGGATA
62 GCCGACGGGTAGACAAAAGATAAAGAAGTCTCCCAGGTCTGAGCTAATGGGTAGACAAAAGATA
* * * * * *
1526485 AA-ACAGTCT-TTCGAGCCTAAACCGAC-GAGCAGACAAAAGATAAAGAAGTCTCTGAGG-CTTG
1 AAGA-AGTCTCCTAG-GTCTGAGCCGACAG-GCAGACAAAAGATAAAGAAGTCTC-CAGGTC-TG
* * * * * * * * * * *
1526546 AGCTGATGGGAAAACAAAAGATAAAAAAGTCTCCC-GAATTTAAGCCAATGGGCAAACAAAAGAT
61 AGCCGACGGGTAGACAAAAGATAAAGAAGTCTCCCAG-GTCTGAGCTAATGGGTAGACAAAAGAT
1526610 A
125 A
* * * * * * *
1526611 TAGAAGTCT-CTCGGGTCTGAGCTGAC-GAGTAGACAAAAGATAAATAAGTCTCCCAAGTCTAAG
1 AAGAAGTCTCCT-AGGTCTGAGCCGACAG-GCAGACAAAAGATAAAGAAGTCT-CCAGGTCTGAG
* * * * *
1526674 TCGATGGATAGACAAAGGATAGAGAAGTCT
63 CCGACGGGTAGACAAAAGATAAAGAAGTCT
1526704 TTCGAGTCTG
Statistics
Matches: 740, Mismatches: 200, Indels: 66
0.74 0.20 0.07
Matches are distributed among these distances:
124 5 0.01
125 178 0.24
126 548 0.74
127 9 0.01
ACGTcount: A:0.38, C:0.17, G:0.25, T:0.20
Consensus pattern (125 bp):
AAGAAGTCTCCTAGGTCTGAGCCGACAGGCAGACAAAAGATAAAGAAGTCTCCAGGTCTGAGCCG
ACGGGTAGACAAAAGATAAAGAAGTCTCCCAGGTCTGAGCTAATGGGTAGACAAAAGATA
Found at i:1527055 original size:18 final size:17
Alignment explanation
Indices: 1527025--1527058 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
1527015 ATTTTCTTAA
*
1527025 TTTTTTTTTTGTTTTTC
1 TTTTTTTTGTGTTTTTC
1527042 TTTTGTTTTGTGTTTTT
1 TTTT-TTTTGTGTTTTT
1527059 TTGTGATCAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 4 0.27
18 11 0.73
ACGTcount: A:0.00, C:0.03, G:0.12, T:0.85
Consensus pattern (17 bp):
TTTTTTTTGTGTTTTTC
Found at i:1527350 original size:78 final size:80
Alignment explanation
Indices: 1527268--1527423 Score: 226
Period size: 78 Copynumber: 2.0 Consensus size: 80
1527258 ACATGTAGGG
* * * ** *
1527268 AGTGCCCCTCATGGCCATTTGATGCATCAATACCATTTAGTATTTGAGAATGAGGGATATGACT-
1 AGTGCCCCTCATAGCCATGTAATGCATCAATACCATTTAGTATTTGAGAAAAAGAGATATGACTA
1527332 AGAA-GTGTGTGGGA
66 AGAATGTGTGTGGGA
* *
1527346 AGTGCCCCTCTTAGCTATGTAATGCATCAATACCATTTAGTATTTGAGAAAAAGAGATATGACTA
1 AGTGCCCCTCATAGCCATGTAATGCATCAATACCATTTAGTATTTGAGAAAAAGAGATATGACTA
1527411 AGAATGTGTGTGG
66 AGAATGTGTGTGG
1527424 TCGGGCTGTT
Statistics
Matches: 68, Mismatches: 8, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
78 56 0.82
79 4 0.06
80 8 0.12
ACGTcount: A:0.31, C:0.15, G:0.24, T:0.30
Consensus pattern (80 bp):
AGTGCCCCTCATAGCCATGTAATGCATCAATACCATTTAGTATTTGAGAAAAAGAGATATGACTA
AGAATGTGTGTGGGA
Found at i:1527570 original size:92 final size:89
Alignment explanation
Indices: 1527438--1527642 Score: 293
Period size: 92 Copynumber: 2.3 Consensus size: 89
1527428 GCTGTTCTTA
* * *
1527438 CCCCAAGGAAATCAGGTTTTGTGACGCATCAATACCATCTAGTGGTTGGATGAAGGGGATATGAT
1 CCCCAAGGAAATCAGGCTTTATGACGCATCAATACCATCTAGTGGTTAGATGAAGGGGATATGA-
*
1527503 TTGAAGGGATGTGTGGGCTACACCTTG
65 TTG--GGGATGTATGGGCTACACCTTG
* * * * *
1527530 CCCTAAGTAGATCAGGCTTTATGATGCATCAATACGATCTAGTGGTTAGATGAAGGGGATATGAT
1 CCCCAAGGAAATCAGGCTTTATGACGCATCAATACCATCTAGTGGTTAGATGAAGGGGATATGAT
1527595 TGGGGATGTATGGGCTACACCTTG
66 TGGGGATGTATGGGCTACACCTTG
1527619 CCCCAAGGAAATCAAGGCTTTATG
1 CCCCAAGGAAATC-AGGCTTTATG
1527643 GTTATATGAA
Statistics
Matches: 100, Mismatches: 12, Indels: 4
0.86 0.10 0.03
Matches are distributed among these distances:
89 31 0.31
90 10 0.10
91 3 0.03
92 56 0.56
ACGTcount: A:0.27, C:0.17, G:0.29, T:0.27
Consensus pattern (89 bp):
CCCCAAGGAAATCAGGCTTTATGACGCATCAATACCATCTAGTGGTTAGATGAAGGGGATATGAT
TGGGGATGTATGGGCTACACCTTG
Found at i:1528284 original size:20 final size:19
Alignment explanation
Indices: 1528235--1528289 Score: 65
Period size: 19 Copynumber: 2.8 Consensus size: 19
1528225 TGTGTCGATG
***
1528235 CATTGTATCGATACATGTT
1 CATTGTATCGATACATAAA
*
1528254 CATTATATCGATACATAAA
1 CATTGTATCGATACATAAA
1528273 CAATTGTATCGATACAT
1 C-ATTGTATCGATACAT
1528290 GAAATTGGCA
Statistics
Matches: 30, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
19 16 0.53
20 14 0.47
ACGTcount: A:0.36, C:0.16, G:0.11, T:0.36
Consensus pattern (19 bp):
CATTGTATCGATACATAAA
Found at i:1528345 original size:20 final size:20
Alignment explanation
Indices: 1528320--1528374 Score: 76
Period size: 20 Copynumber: 2.8 Consensus size: 20
1528310 TACTACTATT
1528320 TGTATCGATACATGGT-ACAA
1 TGTATCGATACATGGTGA-AA
* *
1528340 TGTATCGATACATGATGAAT
1 TGTATCGATACATGGTGAAA
1528360 TGTATCGATACATGG
1 TGTATCGATACATGG
1528375 CTACGGGAAT
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
20 30 0.97
21 1 0.03
ACGTcount: A:0.33, C:0.13, G:0.22, T:0.33
Consensus pattern (20 bp):
TGTATCGATACATGGTGAAA
Found at i:1530563 original size:20 final size:21
Alignment explanation
Indices: 1530522--1530564 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
1530512 TATGAAAAAG
1530522 TTAGCTAATGAAAATAATGAA
1 TTAGCTAATGAAAATAATGAA
1530543 TTAGCTAA-GAAAAATAA-GAA
1 TTAGCTAATG-AAAATAATGAA
1530563 TT
1 TT
1530565 TGCATGATTC
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
20 6 0.29
21 15 0.71
ACGTcount: A:0.53, C:0.05, G:0.14, T:0.28
Consensus pattern (21 bp):
TTAGCTAATGAAAATAATGAA
Found at i:1535913 original size:22 final size:22
Alignment explanation
Indices: 1535885--1535936 Score: 77
Period size: 22 Copynumber: 2.4 Consensus size: 22
1535875 AGATTTGGCA
*
1535885 AAGGGGGAGAAATGCCTTGATT
1 AAGGGGGAGAAATGCCTTAATT
* *
1535907 AAGGGGGAGAAATTCTTTAATT
1 AAGGGGGAGAAATGCCTTAATT
1535929 AAGGGGGA
1 AAGGGGGA
1535937 AAAAAGAAAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 27 1.00
ACGTcount: A:0.35, C:0.06, G:0.37, T:0.23
Consensus pattern (22 bp):
AAGGGGGAGAAATGCCTTAATT
Found at i:1536506 original size:19 final size:20
Alignment explanation
Indices: 1536463--1536513 Score: 70
Period size: 19 Copynumber: 2.6 Consensus size: 20
1536453 CTCACCCAGA
*
1536463 TGTATCGATACATTATGCTT
1 TGTATCGATACATTATGCAT
1536483 TGTATCGATACATGT-T-CAT
1 TGTATCGATACAT-TATGCAT
1536502 TGTATCGATACA
1 TGTATCGATACA
1536514 CGGACAATTG
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
19 14 0.48
20 14 0.48
21 1 0.03
ACGTcount: A:0.27, C:0.16, G:0.16, T:0.41
Consensus pattern (20 bp):
TGTATCGATACATTATGCAT
Found at i:1536525 original size:20 final size:19
Alignment explanation
Indices: 1536482--1536533 Score: 59
Period size: 19 Copynumber: 2.7 Consensus size: 19
1536472 ACATTATGCT
* **
1536482 TTGTATCGATACATGTTCA
1 TTGTATCGATACACGGACA
1536501 TTGTATCGATACACGGACAA
1 TTGTATCGATACACGGAC-A
*
1536521 TTGTATTGATACA
1 TTGTATCGATACA
1536534 TGAAATTGGC
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
19 15 0.54
20 13 0.46
ACGTcount: A:0.31, C:0.15, G:0.17, T:0.37
Consensus pattern (19 bp):
TTGTATCGATACACGGACA
Found at i:1536601 original size:13 final size:12
Alignment explanation
Indices: 1536584--1536630 Score: 57
Period size: 13 Copynumber: 4.2 Consensus size: 12
1536574 ACATGGTACA
1536584 ATGTATCGATAC
1 ATGTATCGATAC
1536596 ATTGTATCGATAC
1 A-TGTATCGATAC
1536609 ATG-AT-GA-AC
1 ATGTATCGATAC
1536618 -TGTATCGATAC
1 ATGTATCGATAC
1536629 AT
1 AT
1536631 TGCTTGTAAC
Statistics
Matches: 30, Mismatches: 0, Indels: 10
0.75 0.00 0.25
Matches are distributed among these distances:
8 2 0.07
9 4 0.13
10 4 0.13
11 4 0.13
12 4 0.13
13 12 0.40
ACGTcount: A:0.34, C:0.15, G:0.17, T:0.34
Consensus pattern (12 bp):
ATGTATCGATAC
Found at i:1536606 original size:33 final size:33
Alignment explanation
Indices: 1536564--1536632 Score: 104
Period size: 33 Copynumber: 2.1 Consensus size: 33
1536554 TTACCACTGT
*
1536564 TTGTATCGATACATGGT-ACAATGTATCGATACA
1 TTGTATCGATACATGATGA-AATGTATCGATACA
*
1536597 TTGTATCGATACATGATGAACTGTATCGATACA
1 TTGTATCGATACATGATGAAATGTATCGATACA
1536630 TTG
1 TTG
1536633 CTTGTAACGG
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
33 32 0.97
34 1 0.03
ACGTcount: A:0.32, C:0.14, G:0.19, T:0.35
Consensus pattern (33 bp):
TTGTATCGATACATGATGAAATGTATCGATACA
Found at i:1538596 original size:20 final size:20
Alignment explanation
Indices: 1538567--1538611 Score: 58
Period size: 20 Copynumber: 2.2 Consensus size: 20
1538557 TTCCTCATCT
1538567 TTTTTATTTTTC-TTTTTTC
1 TTTTTATTTTTCGTTTTTTC
1538586 TTTCTT-TTTTTCGTTTTTTC
1 TTT-TTATTTTTCGTTTTTTC
1538606 TCTTTT
1 T-TTTT
1538612 TCTAAAATTT
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
19 9 0.39
20 12 0.52
21 2 0.09
ACGTcount: A:0.02, C:0.13, G:0.02, T:0.82
Consensus pattern (20 bp):
TTTTTATTTTTCGTTTTTTC
Found at i:1539853 original size:32 final size:33
Alignment explanation
Indices: 1539794--1539857 Score: 94
Period size: 32 Copynumber: 2.0 Consensus size: 33
1539784 ACACCCAGAA
* *
1539794 GTATCGATACATATTGCTTAGTATCGATACATT
1 GTATCAATACATATTGCATAGTATCGATACATT
*
1539827 GTATCAATACATGTT-CATAGTATCGATACAT
1 GTATCAATACATATTGCATAGTATCGATACAT
1539858 CTTTAAATGT
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
32 15 0.54
33 13 0.46
ACGTcount: A:0.33, C:0.16, G:0.14, T:0.38
Consensus pattern (33 bp):
GTATCAATACATATTGCATAGTATCGATACATT
Found at i:1539855 original size:19 final size:20
Alignment explanation
Indices: 1539826--1539878 Score: 63
Period size: 19 Copynumber: 2.7 Consensus size: 20
1539816 ATCGATACAT
* *
1539826 TGTATCAATACATGTTCATA
1 TGTATCGATACATGTTCAAA
* *
1539846 -GTATCGATACATCTTTAAA
1 TGTATCGATACATGTTCAAA
1539865 TGTATCGATACATG
1 TGTATCGATACATG
1539879 AAACTGGCAA
Statistics
Matches: 27, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
19 15 0.56
20 12 0.44
ACGTcount: A:0.34, C:0.15, G:0.13, T:0.38
Consensus pattern (20 bp):
TGTATCGATACATGTTCAAA
Found at i:1540164 original size:20 final size:19
Alignment explanation
Indices: 1540123--1540166 Score: 52
Period size: 20 Copynumber: 2.3 Consensus size: 19
1540113 CCAACAGCTA
* *
1540123 AAGAACAATAAGAAAGAAC
1 AAGAACAACAAGAAACAAC
*
1540142 AAGAACCAACAAGAAACATC
1 AAGAA-CAACAAGAAACAAC
1540162 AAGAA
1 AAGAA
1540167 ATCTAAGCAA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
19 5 0.24
20 16 0.76
ACGTcount: A:0.66, C:0.16, G:0.14, T:0.05
Consensus pattern (19 bp):
AAGAACAACAAGAAACAAC
Found at i:1541528 original size:3 final size:3
Alignment explanation
Indices: 1541520--1541553 Score: 50
Period size: 3 Copynumber: 11.3 Consensus size: 3
1541510 TCAACCGTCA
* *
1541520 ATG ATG ATG AAG ATG ATG ATG ATA ATG ATG ATG A
1 ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG A
1541554 AGTTGGCTCG
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.41, C:0.00, G:0.29, T:0.29
Consensus pattern (3 bp):
ATG
Found at i:1541535 original size:12 final size:12
Alignment explanation
Indices: 1541520--1541555 Score: 56
Period size: 12 Copynumber: 3.0 Consensus size: 12
1541510 TCAACCGTCA
1541520 ATGATGATGAAG
1 ATGATGATGAAG
1541532 ATGATGATGATA-
1 ATGATGATGA-AG
1541544 ATGATGATGAAG
1 ATGATGATGAAG
1541556 TTGGCTCGAA
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
11 1 0.05
12 20 0.91
13 1 0.05
ACGTcount: A:0.42, C:0.00, G:0.31, T:0.28
Consensus pattern (12 bp):
ATGATGATGAAG
Found at i:1545762 original size:20 final size:20
Alignment explanation
Indices: 1545719--1545762 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
1545709 TTCAAGTGCA
*
1545719 TGTATCGATACATTACGAAT
1 TGTATCGATACATTACGAAG
1545739 TGTATCGATACATTA-GAGAG
1 TGTATCGATACATTACGA-AG
1545759 TGTA
1 TGTA
1545763 AGTGCAGAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 2 0.09
20 20 0.91
ACGTcount: A:0.34, C:0.11, G:0.20, T:0.34
Consensus pattern (20 bp):
TGTATCGATACATTACGAAG
Found at i:1547191 original size:13 final size:13
Alignment explanation
Indices: 1547173--1547197 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1547163 AAAGTTTTTA
1547173 GTATCGATACATT
1 GTATCGATACATT
1547186 GTATCGATACAT
1 GTATCGATACAT
1547198 GGGTACTATT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
GTATCGATACATT
Found at i:1549949 original size:21 final size:21
Alignment explanation
Indices: 1549920--1549960 Score: 66
Period size: 20 Copynumber: 2.0 Consensus size: 21
1549910 AAAGGTCAAA
1549920 ACCCTAGAAAGTATCGATACAC
1 ACCCTAG-AAGTATCGATACAC
1549942 ACCC-AGAAGTATCGATACA
1 ACCCTAGAAGTATCGATACA
1549961 TATTGCTTAG
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 13 0.68
21 2 0.11
22 4 0.21
ACGTcount: A:0.41, C:0.27, G:0.15, T:0.17
Consensus pattern (21 bp):
ACCCTAGAAGTATCGATACAC
Found at i:1550301 original size:10 final size:10
Alignment explanation
Indices: 1550283--1550324 Score: 57
Period size: 10 Copynumber: 4.2 Consensus size: 10
1550273 ACAGCTGAAG
1550283 AACAACAAGA
1 AACAACAAGA
*
1550293 AAGAACAAGA
1 AACAACAAGA
*
1550303 ACCAACAAGA
1 AACAACAAGA
*
1550313 AACATCAAGA
1 AACAACAAGA
1550323 AA
1 AA
1550325 TCCTAGCAAT
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
10 27 1.00
ACGTcount: A:0.67, C:0.19, G:0.12, T:0.02
Consensus pattern (10 bp):
AACAACAAGA
Found at i:1551291 original size:22 final size:21
Alignment explanation
Indices: 1551263--1551304 Score: 59
Period size: 23 Copynumber: 2.0 Consensus size: 21
1551253 GATAAGTATA
1551263 AATG-TTTTCAAGGCTTAAAATG
1 AATGTTTTTCAA-GC-TAAAATG
1551285 AATGTTTTTCAAGCTAAAAT
1 AATGTTTTTCAAGCTAAAAT
1551305 ATATCAAAGT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
21 6 0.32
22 6 0.32
23 7 0.37
ACGTcount: A:0.38, C:0.10, G:0.14, T:0.38
Consensus pattern (21 bp):
AATGTTTTTCAAGCTAAAATG
Found at i:1551463 original size:20 final size:20
Alignment explanation
Indices: 1551438--1551487 Score: 64
Period size: 20 Copynumber: 2.5 Consensus size: 20
1551428 CGATACATTT
***
1551438 TATCGATACATGGCTAAATG
1 TATCGATACATGAAAAAATG
*
1551458 TATCGATACTTGAAAAAATG
1 TATCGATACATGAAAAAATG
1551478 TATCGATACA
1 TATCGATACA
1551488 GGTCATTGGC
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.40, C:0.14, G:0.16, T:0.30
Consensus pattern (20 bp):
TATCGATACATGAAAAAATG
Found at i:1551544 original size:19 final size:20
Alignment explanation
Indices: 1551520--1551568 Score: 82
Period size: 20 Copynumber: 2.5 Consensus size: 20
1551510 TAGCTAAATT
*
1551520 TGTATCGATACA-CACAATA
1 TGTATCGATACATCACAAAA
1551539 TGTATCGATACATCACAAAA
1 TGTATCGATACATCACAAAA
1551559 TGTATCGATA
1 TGTATCGATA
1551569 TATTGGCTTG
Statistics
Matches: 28, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
19 12 0.43
20 16 0.57
ACGTcount: A:0.41, C:0.18, G:0.12, T:0.29
Consensus pattern (20 bp):
TGTATCGATACATCACAAAA
Found at i:1553401 original size:21 final size:21
Alignment explanation
Indices: 1553375--1553421 Score: 94
Period size: 21 Copynumber: 2.2 Consensus size: 21
1553365 TTTGAAGAAA
1553375 AAGAATGTGAGCAAACCGAAG
1 AAGAATGTGAGCAAACCGAAG
1553396 AAGAATGTGAGCAAACCGAAG
1 AAGAATGTGAGCAAACCGAAG
1553417 AAGAA
1 AAGAA
1553422 AGCCATGGTA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.51, C:0.13, G:0.28, T:0.09
Consensus pattern (21 bp):
AAGAATGTGAGCAAACCGAAG
Found at i:1553419 original size:24 final size:24
Alignment explanation
Indices: 1553368--1553421 Score: 78
Period size: 21 Copynumber: 2.4 Consensus size: 24
1553358 GTCCTAATTT
*
1553368 GAAGAAAAAGAATGTGAGCAAACC
1 GAAGAAGAAGAATGTGAGCAAACC
1553392 ---GAAGAAGAATGTGAGCAAACC
1 GAAGAAGAAGAATGTGAGCAAACC
1553413 GAAGAAGAA
1 GAAGAAGAA
1553422 AGCCATGGTA
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
21 20 0.77
24 6 0.23
ACGTcount: A:0.54, C:0.11, G:0.28, T:0.07
Consensus pattern (24 bp):
GAAGAAGAAGAATGTGAGCAAACC
Found at i:1557752 original size:13 final size:13
Alignment explanation
Indices: 1557730--1557767 Score: 58
Period size: 13 Copynumber: 2.9 Consensus size: 13
1557720 CAGTATTCTC
*
1557730 TGTATCGATACAT
1 TGTATCGATACAG
*
1557743 TGTGTCGATACAG
1 TGTATCGATACAG
1557756 TGTATCGATACA
1 TGTATCGATACA
1557768 AGGGGATTAT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
13 22 1.00
ACGTcount: A:0.29, C:0.16, G:0.21, T:0.34
Consensus pattern (13 bp):
TGTATCGATACAG
Found at i:1558240 original size:20 final size:21
Alignment explanation
Indices: 1558200--1558251 Score: 61
Period size: 20 Copynumber: 2.4 Consensus size: 21
1558190 CCCCTAGGCA
*
1558200 GCACCCACCAAGTCGCGACC-G
1 GCACCC-CCAAGTCGCAACCGG
*
1558221 GCACCCCCAGGTCGCAACCGG
1 GCACCCCCAAGTCGCAACCGG
1558242 GCAGCCCCCA
1 GCA-CCCCCA
1558252 CACTAGCAGC
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
20 11 0.41
21 10 0.37
22 6 0.22
ACGTcount: A:0.21, C:0.50, G:0.25, T:0.04
Consensus pattern (21 bp):
GCACCCCCAAGTCGCAACCGG
Found at i:1559430 original size:16 final size:16
Alignment explanation
Indices: 1559392--1559440 Score: 50
Period size: 16 Copynumber: 3.1 Consensus size: 16
1559382 CCTAGGAATT
1559392 ATTGTATTT-TC-TTG
1 ATTGTATTTATCTTTG
1559406 ACTTGGTATTTATCTTTG
1 A-TT-GTATTTATCTTTG
1559424 ATTGTATTGTA-CTTTG
1 ATTGTATT-TATCTTTG
1559440 A
1 A
1559441 CGTTTTATCT
Statistics
Matches: 30, Mismatches: 0, Indels: 8
0.79 0.00 0.21
Matches are distributed among these distances:
14 1 0.03
15 2 0.07
16 17 0.57
17 6 0.20
18 4 0.13
ACGTcount: A:0.18, C:0.08, G:0.16, T:0.57
Consensus pattern (16 bp):
ATTGTATTTATCTTTG
Found at i:1559661 original size:21 final size:22
Alignment explanation
Indices: 1559621--1559665 Score: 74
Period size: 22 Copynumber: 2.0 Consensus size: 22
1559611 CGAAAGTGTT
1559621 AAATTATTTTATTAAGGGGGAG
1 AAATTATTTTATTAAGGGGGAG
1559643 AAATT-TTTTGATTAAGGGGGAG
1 AAATTATTTT-ATTAAGGGGGAG
1559665 A
1 A
1559666 GAAAAGAAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
21 4 0.18
22 18 0.82
ACGTcount: A:0.36, C:0.00, G:0.29, T:0.36
Consensus pattern (22 bp):
AAATTATTTTATTAAGGGGGAG
Found at i:1560358 original size:20 final size:20
Alignment explanation
Indices: 1560319--1560368 Score: 84
Period size: 20 Copynumber: 2.5 Consensus size: 20
1560309 GCTAAATTTA
*
1560319 TATCGATACA-CACAATATG
1 TATCGATACATCACAAAATG
1560338 TATCGATACATCACAAAATG
1 TATCGATACATCACAAAATG
1560358 TATCGATACAT
1 TATCGATACAT
1560369 TGGCTTGTAA
Statistics
Matches: 29, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
19 10 0.34
20 19 0.66
ACGTcount: A:0.42, C:0.20, G:0.10, T:0.28
Consensus pattern (20 bp):
TATCGATACATCACAAAATG
Found at i:1563838 original size:157 final size:155
Alignment explanation
Indices: 1563653--1564022 Score: 388
Period size: 155 Copynumber: 2.4 Consensus size: 155
1563643 TGCTAAGATG
* * *
1563653 AACCTATCCTAAATACCTACCTTTGGCATAAAAGCAAACTCGGTGACAACCTAGGACTCATTTTT
1 AACCTATCCTAAATACCCACCTTCGGCATAAAAGCAAACTCGGTGACAACCTAGGACTCAATTTT
* * * * * * *
1563718 GAAAAAATAACGAAAATGCCCTTATAGGTATACCTTCGACGT-GAAAGTCTCCTGATAAC-CTTG
66 -AAAAAATAACAAAAATACCCCTA-AGGGATACCTTCGACGTAGAAA-T-GCCTGAT-ACTCGTA
* *
1563781 AACGACTTAAAAA-TGTTAGAGAT-GGGATA
126 AAAGACTTAAAAAGGGTTAGAGATAGGG-TA
* * ** *
1563810 AACCTATCCTAAATGCCCACCTTCGGCATATAAGCGGACTCGGTGACAACCTAAGACTCAATTTT
1 AACCTATCCTAAATACCCACCTTCGGCATAAAAGCAAACTCGGTGACAACCTAGGACTCAATTTT
* * * *
1563875 AAAAAATTACAAAAATACCCCTAGGGGATACTTTCGATGTAGAAATGCCTGATACTCGTAAAAGA
66 AAAAAATAACAAAAATACCCCTAAGGGATACCTTCGACGTAGAAATGCCTGATACTCGTAAAAGA
* *
1563940 CTTAAAAAGGGTTATAGATAGGGTG
131 CTTAAAAAGGGTTAGAGATAGGGTA
* ** * * * *
1563965 ACCCTATCCTAAATACCCAGTTTCGGCATAAAAGCTAGCCCGGTGACATCCTAGGACT
1 AACCTATCCTAAATACCCACCTTCGGCATAAAAGCAAACTCGGTGACAACCTAGGACT
1564023 AGGTTATGAA
Statistics
Matches: 175, Mismatches: 34, Indels: 10
0.80 0.16 0.05
Matches are distributed among these distances:
153 2 0.01
154 20 0.11
155 70 0.40
156 26 0.15
157 57 0.33
ACGTcount: A:0.36, C:0.22, G:0.18, T:0.25
Consensus pattern (155 bp):
AACCTATCCTAAATACCCACCTTCGGCATAAAAGCAAACTCGGTGACAACCTAGGACTCAATTTT
AAAAAATAACAAAAATACCCCTAAGGGATACCTTCGACGTAGAAATGCCTGATACTCGTAAAAGA
CTTAAAAAGGGTTAGAGATAGGGTA
Found at i:1565623 original size:20 final size:19
Alignment explanation
Indices: 1565580--1565635 Score: 76
Period size: 19 Copynumber: 2.9 Consensus size: 19
1565570 GTATTGATAC
**
1565580 ATTGTATCGATACATGTTA
1 ATTGTATCGATACATGACA
1565599 ATTGTATCGATACATAGACA
1 ATTGTATCGATACAT-GACA
*
1565619 ATTGTATCGACACATGA
1 ATTGTATCGATACATGA
1565636 GATTGGTAGT
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
19 17 0.52
20 16 0.48
ACGTcount: A:0.36, C:0.14, G:0.16, T:0.34
Consensus pattern (19 bp):
ATTGTATCGATACATGACA
Found at i:1566638 original size:11 final size:11
Alignment explanation
Indices: 1566622--1566659 Score: 51
Period size: 11 Copynumber: 3.4 Consensus size: 11
1566612 TGCCTTATTT
1566622 TTTCTTTTTTC
1 TTTCTTTTTTC
1566633 TTTCTTTTTT-
1 TTTCTTTTTTC
1566643 TTGTCTATTTTTC
1 TT-TCT-TTTTTC
1566656 TTTC
1 TTTC
1566660 ACTTTCCCAT
Statistics
Matches: 24, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
10 2 0.08
11 13 0.54
12 7 0.29
13 2 0.08
ACGTcount: A:0.03, C:0.16, G:0.03, T:0.79
Consensus pattern (11 bp):
TTTCTTTTTTC
Found at i:1566954 original size:14 final size:15
Alignment explanation
Indices: 1566923--1566954 Score: 57
Period size: 14 Copynumber: 2.2 Consensus size: 15
1566913 AAAAAGGATT
1566923 AAATTATAAAAATTA
1 AAATTATAAAAATTA
1566938 AAATT-TAAAAATTA
1 AAATTATAAAAATTA
1566952 AAA
1 AAA
1566955 CAAAATTTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 12 0.71
15 5 0.29
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (15 bp):
AAATTATAAAAATTA
Found at i:1572893 original size:164 final size:162
Alignment explanation
Indices: 1572397--1573200 Score: 1004
Period size: 164 Copynumber: 4.9 Consensus size: 162
1572387 TTAGTTTTAT
* ** * * * *
1572397 TTTTTAAAATTCATAAAATATTATTATTTAACTCACATTAAATCAGTTTTCAAAGATTTATTCA-
1 TTTTTAAAATTCATCAAATATTATTATTTATTTCATATTAATTCAGTTTTCAAAAATTCATTCAT
* * * * *
1572461 TCCTCATAAAATTTTGAGTTTTTTGCCTTGAAATCCCTTTTTTCTAAAATACGGAATATTCTACT
66 TTC-CAT-AAATTTTGAATTTTTT-CCTTGAAAT--CTTTTTTTTAAAATACGGAGTTTTCTACT
* * *
1572526 CCGTAAATT-TTTCGAGGGGATTTTTCTTATTTTTTGA
126 CCGTAAATTCTTTTG-GGGGAATTTTCTTGTTTTTTGA
* * * *
1572563 TTTTTAAAATTTATCAAATATTATTATTTATTTTATATTAATTCAGATTTAAAAAATTCATTCAT
1 TTTTTAAAATTCATCAAATATTATTATTTATTTCATATTAATTCAGTTTTCAAAAATTCATTCAT
**
1572628 TTCCATAAATTTTGAATTTTTTCCTTGAAATCCCTTTTTTTTTCTAAAATACAAAGTTTTCTACT
66 TTCCATAAATTTTGAATTTTTTCCTTGAAAT--C--TTTTTTT-TAAAATACGGAGTTTTCTACT
1572693 CCGTAAATTCTTTTGGGGGAATTTTTCTTGTTTTTTGA
126 CCGTAAATTCTTTTGGGGGAA-TTTTCTTGTTTTTTGA
** *
1572731 TTTTTAAAATTCATCAAATATTATTATTTATTTTGTATTAATTTAGTTTTCAAAAATTCATTCAT
1 TTTTTAAAATTCATCAAATATTATTATTTATTTCATATTAATTCAGTTTTCAAAAATTCATTCAT
*
1572796 TTCCATAAATTTTGAATTTTTTTCCTTGAAATCTTTTTTTTAAAATACGGAGTTTTCTGCTCCGT
66 TTCCATAAATTTTGAA-TTTTTTCCTTGAAATCTTTTTTTTAAAATACGGAGTTTTCTACTCCGT
1572861 AAATTCTTTTGGGGGAAATTTTCTTGTTTTTTGA
130 AAATTCTTTTGGGGG-AATTTTCTTGTTTTTTGA
* * * * *
1572895 TTTTTAAAAATCATAAAATTTTATTATTTATTTCATATTAATTTAGTATTCAAAAATTCATTCAT
1 TTTTTAAAATTCATCAAATATTATTATTTATTTCATATTAATTCAGTTTTCAAAAATTCATTCAT
* * ** *
1572960 TTTCAAAAATTTTGAATTTTTTCCTTGAAATCTCTTTTTTCGAAATACGGAGTTTTCTACTTCGT
66 TTCCATAAATTTTGAATTTTTTCCTTGAAATCT-TTTTTTTAAAATACGGAGTTTTCTACTCCGT
* * * *
1573025 AATTTCTTTCAGGGGG-ATTTTCCTTTTTTTTTTA
130 AAATTCTTT-TGGGGGAATTTT-CTTGTTTTTTGA
*
1573059 TTTTTAAAATTCATCAAATATTATTATTTATTTCATATTAATTCAGTTTTCAAAAATTCATTCCT
1 TTTTTAAAATTCATCAAATATTATTATTTATTTCATATTAATTCAGTTTTCAAAAATTCATTCAT
* *
1573124 TTCCATGAATTTTTGAATTTTTTCCTTGAAATTCTCTTTTTTCTAAAATACGGAGTTTTCTATTC
66 TTCCAT-AAATTTTGAATTTTTTCCTTGAAA-TCT-TTTTTT-TAAAATACGGAGTTTTCTACTC
*
1573189 CATAAATT-TTTT
127 CGTAAATTCTTTT
1573201 CGAAGGGATT
Statistics
Matches: 563, Mismatches: 61, Indels: 29
0.86 0.09 0.04
Matches are distributed among these distances:
163 22 0.04
164 246 0.44
165 52 0.09
166 75 0.13
167 58 0.10
168 95 0.17
169 15 0.03
ACGTcount: A:0.29, C:0.12, G:0.08, T:0.51
Consensus pattern (162 bp):
TTTTTAAAATTCATCAAATATTATTATTTATTTCATATTAATTCAGTTTTCAAAAATTCATTCAT
TTCCATAAATTTTGAATTTTTTCCTTGAAATCTTTTTTTTAAAATACGGAGTTTTCTACTCCGTA
AATTCTTTTGGGGGAATTTTCTTGTTTTTTGA
Found at i:1573305 original size:496 final size:498
Alignment explanation
Indices: 1572397--1573314 Score: 1192
Period size: 496 Copynumber: 1.8 Consensus size: 498
1572387 TTAGTTTTAT
* * * *
1572397 TTTTTAAAATTCATAAAATATTATTATTTAACTCACATTAAATCAGTTTTCAAAGATTTATTCAT
1 TTTTTAAAAATCATAAAATATTATTATTTAACTCACATTAAATCAGTATTCAAAAATTCATTCAT
*
1572462 CCTCATAAAATTTTGAGTTTTTTGCCTTGAAATCCCTTTTTTCTAAAATACGGAATATTCTACTC
66 CCTCATAAAATTTTGAATTTTTTGCCTTGAAATCCCTTTTTTCTAAAATACGGAATATTCTACTC
* *
1572527 CGTAAATTTTTCGAGGGGATTTTTCTTATTTTTTGATTTTTAAAATTTATCAAATATTATTATTT
131 CGTAAATTTTTCGAGGGGATTTTCCTTATTTTTTGATTTTTAAAATTCATCAAATATTATTATTT
*
1572592 ATTTTATATTAATTCAGATTTAAAAAATTCATTCATTTCCATAAATTTTGAATTTTTTCCTTGAA
196 ATTTCATATTAATTCAGATTTAAAAAATTCATTCATTTCCATAAATTTTGAATTTTTTCCTTGAA
* * *
1572657 ATCCCTTTTTTTTTCTAAAATACAAAGTTTTCTACTCCGTAAATTCTTTTGGGGGAATTTTTCTT
261 ATCCCTTCTTTTTTCTAAAATACAAAGTTTTCTACTCCATAAATTCTTTTGAGGGAATTTTTCTT
**** * * ** * * * *
1572722 GTTTTTTGATTTTTAAAATTCATCAAATATTATTATTTATTTTGTATTAATTTAGTTTTCAAAAA
326 GTTTAAAAATTTTTAAAATTCATCAAATATTATCATTGAACTCGCATTAATTCAATTTTCAAAAA
*
1572787 TTCATTCATTTCCATAAATTTTGAATTTTTTTCCTTGAAATCTTTTTTTTAAAATACGGAGTTTT
391 TTAATTCATTTCCATAAATTTTGAATTTTTTTCCTTGAAATCTTTTTTTTAAAATACGGAGTTTT
1572852 CTGCTCCGTAAATTCTTTTGGGGGAAATTTTCTTGTTTTTTGA
456 CTGCTCCGTAAATTCTTTTGGGGGAAATTTTCTTGTTTTTTGA
* ** * * *
1572895 TTTTTAAAAATCATAAAATTTTATTATTTATTTCATATTAATTTAGTATTCAAAAATTCATTCAT
1 TTTTTAAAAATCATAAAATATTATTATTTAACTCACATTAAATCAGTATTCAAAAATTCATTCAT
** * * * * *
1572960 TTTCA-AAAATTTTGAATTTTTT-CCTTGAAATCTCTTTTTTC-GAAATACGGAGTTTTCTACTT
66 CCTCATAAAATTTTGAATTTTTTGCCTTGAAATCCCTTTTTTCTAAAATACGGAATATTCTACTC
* * *
1573022 CGTAATTTCTTTC-AGGGGGATTTTCCTTTTTTTTTTATTTTTAAAATTCATCAAATATTATTAT
131 CGTAAATT-TTTCGA-GGGGATTTTCCTTATTTTTTGATTTTTAAAATTCATCAAATATTATTAT
* * * *
1573086 TTATTTCATATTAATTCAGTTTTCAAAAATTCATTCCTTTCCATGAATTTTTGAATTTTTTCCTT
194 TTATTTCATATTAATTCAGATTTAAAAAATTCATTCATTTCCAT-AAATTTTGAATTTTTTCCTT
* ** *
1573151 GAAAT-TC-TCTTTTTTCTAAAATACGGAGTTTTCTATTCCATAAATT-TTTTCGAAGGG-ATTT
258 GAAATCCCTTCTTTTTTCTAAAATACAAAGTTTTCTACTCCATAAATTCTTTT-G-AGGGAATTT
* *
1573212 TTCTTGATTTAAAAATATTTT-AAATTCAT-ATAGTATTGTCATTGAACTCGCATTAATTCAATT
321 TTCTTG-TTTAAAAAT-TTTTAAAATTCATCA-AATATTATCATTGAACTCGCATTAATTCAATT
* * * *
1573275 TTGAAAATTTTAATTTATTT-CATTAATTTTGAATTTTTTT
383 TTCAAAA-ATTAATTCATTTCCATAAATTTTGAATTTTTTT
1573315 TGTATATAGT
Statistics
Matches: 357, Mismatches: 54, Indels: 20
0.83 0.13 0.05
Matches are distributed among these distances:
494 4 0.01
495 71 0.20
496 171 0.48
497 53 0.15
498 58 0.16
ACGTcount: A:0.30, C:0.12, G:0.08, T:0.51
Consensus pattern (498 bp):
TTTTTAAAAATCATAAAATATTATTATTTAACTCACATTAAATCAGTATTCAAAAATTCATTCAT
CCTCATAAAATTTTGAATTTTTTGCCTTGAAATCCCTTTTTTCTAAAATACGGAATATTCTACTC
CGTAAATTTTTCGAGGGGATTTTCCTTATTTTTTGATTTTTAAAATTCATCAAATATTATTATTT
ATTTCATATTAATTCAGATTTAAAAAATTCATTCATTTCCATAAATTTTGAATTTTTTCCTTGAA
ATCCCTTCTTTTTTCTAAAATACAAAGTTTTCTACTCCATAAATTCTTTTGAGGGAATTTTTCTT
GTTTAAAAATTTTTAAAATTCATCAAATATTATCATTGAACTCGCATTAATTCAATTTTCAAAAA
TTAATTCATTTCCATAAATTTTGAATTTTTTTCCTTGAAATCTTTTTTTTAAAATACGGAGTTTT
CTGCTCCGTAAATTCTTTTGGGGGAAATTTTCTTGTTTTTTGA
Found at i:1573793 original size:21 final size:21
Alignment explanation
Indices: 1573760--1573809 Score: 57
Period size: 21 Copynumber: 2.4 Consensus size: 21
1573750 AAAAGGAGAG
*
1573760 AGAAAAGAGAGAAAGAAAA-AA
1 AGAAAAAAGAG-AAGAAAATAA
* *
1573781 AGAAAAAATAGAAGAAAATAT
1 AGAAAAAAGAGAAGAAAATAA
1573802 AGAAAAAA
1 AGAAAAAA
1573810 AAAACAGAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
20 7 0.28
21 18 0.72
ACGTcount: A:0.76, C:0.00, G:0.18, T:0.06
Consensus pattern (21 bp):
AGAAAAAAGAGAAGAAAATAA
Found at i:1575283 original size:158 final size:158
Alignment explanation
Indices: 1574898--1575358 Score: 571
Period size: 158 Copynumber: 2.9 Consensus size: 158
1574888 TAAAATTAAA
* *
1574898 TAATATTTA-TTTTTCTAATATTTTATATTCCTATTGGCATCCGTAGGGGTATAAAAGGTTTCAA
1 TAATATTTATTTTTTCTAATCTTTTATATTCCTA-TGGCATCCGTAGGGGTATAAAAGATTTCAA
* * * *
1574962 AAACTTTTCGTATTCTTTCGGGCTTCCATTAGGG-TAGAAATAGTATTTTCAAAAATAAGTAAAA
65 AAACCTTTCGTATTCTTTCGGGCTTCCATTAGGGTTCGAAATGGTATTTTC-AAAATAA--ATAA
1575026 TTAAATTAAATTGATATTATCACGACAAATTC
127 TTAAATTAAATTGATATTATCACGACAAATTC
* * ***
1575058 TAATATTTATTTTTTTTCTAATCTTTTATATTCCTATAGGCATCCATAGGGTTATAAAA-A-AAA
1 TAATATTTA--TTTTTTCTAATCTTTTATATTCCTAT-GGCATCCGTAGGGGTATAAAAGATTTC
* * *
1575121 AAAAACCTTTCATACTCTTTTGGGCTTCCATTAGGGTTCGAAATGGTATTTTC-AAATAAATAAT
63 AAAAACCTTTCGTATTCTTTCGGGCTTCCATTAGGGTTCGAAATGGTATTTTCAAAATAAATAAT
* * * *
1575185 TAAATTAAATTGGTATTATTAGGATAAATTC
128 TAAATTAAATTGATATTATCACGACAAATTC
*
1575216 TAATATTTATTTTTTCAAATCTTTTATATTCCTATGGACATCCGTAGGGGTATAAAAGATTTCAA
1 TAATATTTATTTTTTCTAATCTTTTATATTCCTATGG-CATCCGTAGGGGTATAAAAGATTTCAA
* * * *
1575281 AAACCTTTCGTATTCTTTCAGGCTTCCATTAGGGTACAAAATGATATTTTCAAAATTAAAT-A--
65 AAACCTTTCGTATTCTTTCGGGCTTCCATTAGGGTTCGAAATGGTATTTTCAAAA-TAAATAATT
1575343 AAATTAAATTGA-ATTA
129 AAATTAAATTGATATTA
1575359 ATACTTTCGA
Statistics
Matches: 259, Mismatches: 32, Indels: 24
0.82 0.10 0.08
Matches are distributed among these distances:
155 2 0.01
156 46 0.18
157 12 0.05
158 86 0.33
159 4 0.02
160 20 0.08
161 32 0.12
162 15 0.06
163 42 0.16
ACGTcount: A:0.36, C:0.12, G:0.12, T:0.41
Consensus pattern (158 bp):
TAATATTTATTTTTTCTAATCTTTTATATTCCTATGGCATCCGTAGGGGTATAAAAGATTTCAAA
AACCTTTCGTATTCTTTCGGGCTTCCATTAGGGTTCGAAATGGTATTTTCAAAATAAATAATTAA
ATTAAATTGATATTATCACGACAAATTC
Found at i:1575970 original size:154 final size:155
Alignment explanation
Indices: 1575637--1575975 Score: 349
Period size: 154 Copynumber: 2.2 Consensus size: 155
1575627 GCATTATCCC
* * * * * * *
1575637 AAGTCCTTTAGAGGTATCAAGTAGTTTTACGTCGAAGGAATCCCCTAGGGGTATTTTCATAATTT
1 AAGTCCTTTAGGGGTATCAGGTACTTTTACATCGAAGGAATCCCCTAGAGGCATTTTCATAATCT
* * * * *
1575702 TTTAAAATCAAGTCCTAGGTTGTCAGCGAGTCCACTTTTATGCCGAAGGTAGATATTTAGGATAG
66 CTTAAAATCAAGTCCTAAGTTATCACCGAGTCCACTTTCATGCCGAAGGTAGATATTTAGGATAG
* **
1575767 GTTCATCTCATCTATTATCCCCTTT
131 GTTCATCCCATCTAAAATCCCCTTT
* * * * * **
1575792 AAGTTCTTTAGGGATA-CCGAGTACTTTTGCATCGAAGGTAT-CCCTAGAGGCATTTTGGTAATC
1 AAGTCCTTTAGGGGTATCAG-GTACTTTTACATCGAAGGAATCCCCTAGAGGCATTTTCATAATC
* * * * * * *
1575855 TCTTAAAATCGAGTCTTAAGTTATCACCGGGTCCGCTTTCATGCTGAAGGTGGGTATTTAGGATA
65 TCTTAAAATCAAGTCCTAAGTTATCACCGAGTCCACTTTCATGCCGAAGGTAGATATTTAGGATA
* * ***
1575920 GGTTCATCCCTTTTAAAATCTTTTTT
130 GGTTCATCCCATCTAAAATCCCCTTT
1575946 AAGTCCTTTAGGGGTATCAGGTACTTTTAC
1 AAGTCCTTTAGGGGTATCAGGTACTTTTAC
1575976 GTTGAATGTA
Statistics
Matches: 144, Mismatches: 38, Indels: 5
0.77 0.20 0.03
Matches are distributed among these distances:
154 112 0.78
155 32 0.22
ACGTcount: A:0.25, C:0.18, G:0.21, T:0.37
Consensus pattern (155 bp):
AAGTCCTTTAGGGGTATCAGGTACTTTTACATCGAAGGAATCCCCTAGAGGCATTTTCATAATCT
CTTAAAATCAAGTCCTAAGTTATCACCGAGTCCACTTTCATGCCGAAGGTAGATATTTAGGATAG
GTTCATCCCATCTAAAATCCCCTTT
Found at i:1580885 original size:6 final size:6
Alignment explanation
Indices: 1580874--1580906 Score: 52
Period size: 6 Copynumber: 5.8 Consensus size: 6
1580864 CAAATTTTCT
1580874 AAAAGA AAAAG- AAAAGA AAAA-A AAAAGA AAAAG
1 AAAAGA AAAAGA AAAAGA AAAAGA AAAAGA AAAAG
1580907 GGTAAAAACA
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
5 10 0.40
6 15 0.60
ACGTcount: A:0.85, C:0.00, G:0.15, T:0.00
Consensus pattern (6 bp):
AAAAGA
Found at i:1580890 original size:11 final size:11
Alignment explanation
Indices: 1580874--1580906 Score: 57
Period size: 11 Copynumber: 3.0 Consensus size: 11
1580864 CAAATTTTCT
1580874 AAAAGAAAAAG
1 AAAAGAAAAAG
*
1580885 AAAAGAAAAAA
1 AAAAGAAAAAG
1580896 AAAAGAAAAAG
1 AAAAGAAAAAG
1580907 GGTAAAAACA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.85, C:0.00, G:0.15, T:0.00
Consensus pattern (11 bp):
AAAAGAAAAAG
Found at i:1580898 original size:16 final size:16
Alignment explanation
Indices: 1580874--1580904 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
1580864 CAAATTTTCT
*
1580874 AAAAGAAAAAGAAAAG
1 AAAAAAAAAAGAAAAG
1580890 AAAAAAAAAAGAAAA
1 AAAAAAAAAAGAAAA
1580905 AGGGTAAAAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.87, C:0.00, G:0.13, T:0.00
Consensus pattern (16 bp):
AAAAAAAAAAGAAAAG
Found at i:1583042 original size:47 final size:47
Alignment explanation
Indices: 1582871--1583629 Score: 519
Period size: 47 Copynumber: 16.2 Consensus size: 47
1582861 TGACTATATT
* * *
1582871 TGGTCAAACTTTT-TCCACCCTTATTTGACTGTATTGGCGTTAGGACC
1 TGGTCAAACTTTTCT-TACCATTGTTTGACTGTATTGGCGTTAGGACC
**** *
1582918 TGGTCAAACTCAAATT-CCATCCTCGTTTGGCTGTATTGGCGTTAGGACC
1 TGGTCAAACTTTTCTTACCAT--T-GTTTGACTGTATTGGCGTTAGGACC
* * * *
1582967 TAGTTAAACACTTTCTTACCATTGTTTGACTATATTGGCGTTAGGACC
1 TGGTCAAAC-TTTTCTTACCATTGTTTGACTGTATTGGCGTTAGGACC
* * * *
1583015 TGCTCAAATTTTTCTTACGATTGTTTGACTGTATTGGCATTAGGACC
1 TGGTCAAACTTTTCTTACCATTGTTTGACTGTATTGGCGTTAGGACC
* * * **
1583062 TGGTCAAACTCTTCTCACC-TTGTTTGACTGTATCGATGTTAGGACC
1 TGGTCAAACTTTTCTTACCATTGTTTGACTGTATTGGCGTTAGGACC
* * *
1583108 TGGTCAAACTTTTCTCACCTTTGTTTGACTGTATTGGCATTAGGACC
1 TGGTCAAACTTTTCTTACCATTGTTTGACTGTATTGGCGTTAGGACC
* * * * ** * *
1583155 TGGTTAAACTCTTC-CACCCTCATTTGACTATATTGGCGTTAAGACC
1 TGGTCAAACTTTTCTTACCATTGTTTGACTGTATTGGCGTTAGGACC
* * * *
1583201 TAGTCAAACTCTTTCCATT--C-TCGTTTGATTGTATTGGCATTAGGACC
1 TGGTCAAACT-TTT-C-TTACCATTGTTTGACTGTATTGGCGTTAGGACC
* * * *
1583248 TAGTCAAACTCTTT-TCATCATTGTTTGACTGTATTGGCATTAGGACC
1 TGGTCAAACT-TTTCTTACCATTGTTTGACTGTATTGGCGTTAGGACC
** * * * *
1583295 TGACCAAA-TTCTTCTCACC-TTATTTGACTGTATTGGTGTTATGACC
1 TGGTCAAACTT-TTCTTACCATTGTTTGACTGTATTGGCGTTAGGACC
** * * **
1583341 TATTCAAACACTTT-TTACCCTCATTTGACTGTATTGGCGTTAGGACC
1 TGGTCAAAC-TTTTCTTACCATTGTTTGACTGTATTGGCGTTAGGACC
** * *
1583388 TGGTCAAACTTTTCTTACCATTGTTTGACTACATTGGTGTTAGGACT
1 TGGTCAAACTTTTCTTACCATTGTTTGACTGTATTGGCGTTAGGACC
* * * * * *
1583435 TAGTCAAACTTTTCTCACCTTTGTTTGACTATATTGGCATTAAGACC
1 TGGTCAAACTTTTCTTACCATTGTTTGACTGTATTGGCGTTAGGACC
* * * * ** * * *
1583482 TGGTCAAAATCTTTC-TATC-TTCATTTGGCCATATTGGCATTA-GTCT
1 TGGTCAAACT-TTTCTTACCATT-GTTTGACTGTATTGGCGTTAGGACC
* * *
1583528 TGGTCAAACTCTTT-TCACC-TTGTTTGGCTGTATTGGCATTAGGACC
1 TGGTCAAACT-TTTCTTACCATTGTTTGACTGTATTGGCGTTAGGACC
* * * ** * * *
1583574 TAGTCAAACTCTTTC-CACCGTCATTTGACCGTATTGGCATTA-GTCC
1 TGGTCAAACT-TTTCTTACCATTGTTTGACTGTATTGGCGTTAGGACC
1583620 TGGTCAAACT
1 TGGTCAAACT
1583630 CTTTTAATCT
Statistics
Matches: 570, Mismatches: 116, Indels: 53
0.77 0.16 0.07
Matches are distributed among these distances:
44 1 0.00
45 18 0.03
46 169 0.30
47 308 0.54
48 37 0.06
49 31 0.05
50 2 0.00
51 4 0.01
ACGTcount: A:0.22, C:0.22, G:0.18, T:0.39
Consensus pattern (47 bp):
TGGTCAAACTTTTCTTACCATTGTTTGACTGTATTGGCGTTAGGACC
Found at i:1583115 original size:93 final size:91
Alignment explanation
Indices: 1582889--1583581 Score: 539
Period size: 93 Copynumber: 7.4 Consensus size: 91
1582879 CTTTTTCCAC
* * * * * * *
1582889 CCTTATTTGACTGTATTGGCGTTAGGACCTGGTCAAACTCAAATTCCATCCTCGTTTGGCTGTAT
1 CCTTGTTTGACTGTATTGGCGTTAGGACCTGGTCAAA-T---TTTTCTTACTTGTTTGACTGTAT
* * * *
1582954 TGGCGTTAGGACCTAGTTAAACACTTTCTTA
62 TGGCATTAGGACCTAGTCAAACTC-TTCTCA
* *
1582985 CCATTGTTTGACTATATTGGCGTTAGGACCTGCTCAAATTTTTCTTACGATTGTTTGACTGTATT
1 CC-TTGTTTGACTGTATTGGCGTTAGGACCTGGTCAAATTTTTCTTAC--TTGTTTGACTGTATT
*
1583050 GGCATTAGGACCTGGTCAAACTCTTCTCA
63 GGCATTAGGACCTAGTCAAACTCTTCTCA
* ** * *
1583079 CCTTGTTTGACTGTATCGATGTTAGGACCTGGTCAAACTTTTCTCACCTTTGTTTGACTGTATTG
1 CCTTGTTTGACTGTATTGGCGTTAGGACCTGGTCAAATTTTTCTTA-C-TTGTTTGACTGTATTG
* *
1583144 GCATTAGGACCTGGTTAAACTCTTC-CA
64 GCATTAGGACCTAGTCAAACTCTTCTCA
** * * * * * *
1583171 CCCTCATTTGACTATATTGGCGTTAAGACCTAGTCAAACTCTTTCCATT-CTCGTTTGATTGTAT
1 -CCTTGTTTGACTGTATTGGCGTTAGGACCTGGTCAAA-T-TTTTC-TTACTTGTTTGACTGTAT
*
1583235 TGGCATTAGGACCTAGTCAAACTCTTTTCA
62 TGGCATTAGGACCTAGTCAAACTCTTCTCA
* * ** * * *
1583265 TCATTGTTTGACTGTATTGGCATTAGGACCTGACCAAATTCTTCTCACCTTATTTGACTGTATTG
1 -CCTTGTTTGACTGTATTGGCGTTAGGACCTGGTCAAATTTTTCTTA-CTTGTTTGACTGTATTG
** * * * * *
1583330 GTGTTATGACCTATTCAAACACTTTTTA
64 GCATTAGGACCTAGTCAAACTCTTCTCA
** * **
1583358 CCCTCATTTGACTGTATTGGCGTTAGGACCTGGTCAAACTTTTCTTACCATTGTTTGACTACATT
1 -CCTTGTTTGACTGTATTGGCGTTAGGACCTGGTCAAATTTTTCTTA-C-TTGTTTGACTGTATT
** * *
1583423 GGTGTTAGGACTTAGTCAAACTTTTCTCA
63 GGCATTAGGACCTAGTCAAACTCTTCTCA
* * * * * * **
1583452 CCTTTGTTTGACTATATTGGCATTAAGACCTGGTCAAAATCTTTC-TATCTTCATTTGGCCATAT
1 CC-TTGTTTGACTGTATTGGCGTTAGGACCTGGTC-AAATTTTTCTTA-CTT-GTTTGACTGTAT
* * * *
1583516 TGGCATTA-GTCTTGGTCAAACTCTTTTCA
62 TGGCATTAGGACCTAGTCAAACTCTTCTCA
* * *
1583545 CCTTGTTTGGCTGTATTGGCATTAGGACCTAGTCAAA
1 CCTTGTTTGACTGTATTGGCGTTAGGACCTGGTCAAA
1583582 CTCTTTCCAC
Statistics
Matches: 479, Mismatches: 103, Indels: 35
0.78 0.17 0.06
Matches are distributed among these distances:
91 4 0.01
92 33 0.07
93 246 0.51
94 117 0.24
95 43 0.09
96 4 0.01
97 32 0.07
ACGTcount: A:0.22, C:0.21, G:0.18, T:0.39
Consensus pattern (91 bp):
CCTTGTTTGACTGTATTGGCGTTAGGACCTGGTCAAATTTTTCTTACTTGTTTGACTGTATTGGC
ATTAGGACCTAGTCAAACTCTTCTCA
Found at i:1583227 original size:140 final size:140
Alignment explanation
Indices: 1582871--1583633 Score: 691
Period size: 140 Copynumber: 5.4 Consensus size: 140
1582861 TGACTATATT
* * * *
1582871 TGGTCAAACT-TTTTCCACCCTTATTTGACTGTATTGGCGTTAGGACCTGGTCAAACTCAAATTC
1 TGGTCAAACTCTTCT-CACCCTTATTTGACTGTATTGGCATTAAGACCTGGTCAAACTC--TTTC
* * * * * *
1582935 CATCCTCGTTTGGCTGTATTGGCGTTAGGACCTAGTTAAACACTTTCTTACCATTGTTTGACTAT
63 CA-CCTCGTTTGACTGTATTGGCGTTAGGACCTGGTCAAAC-TTTTCTCACCATTGTTTGACTGT
*
1583000 ATTGGCGTTAGGACC
126 ATTGGCATTAGGACC
* * * * ** * *
1583015 TGCTCAAATTTTTCTTACGATTGTTTGACTGTATTGGCATTAGGACCTGGTCAAACTC-TTCTCA
1 TGGTCAAACTCTTCTCACCCTTATTTGACTGTATTGGCATTAAGACCTGGTCAAACTCTTTC-CA
* * ** *
1583079 CCTTGTTTGACTGTATCGATGTTAGGACCTGGTCAAACTTTTCTCACCTTTGTTTGACTGTATTG
65 CCTCGTTTGACTGTATTGGCGTTAGGACCTGGTCAAACTTTTCTCACCATTGTTTGACTGTATTG
1583144 GCATTAGGACC
130 GCATTAGGACC
* * * * *
1583155 TGGTTAAACTCTTC-CACCCTCATTTGACTATATTGGCGTTAAGACCTAGTCAAACTCTTTCCAT
1 TGGTCAAACTCTTCTCACCCTTATTTGACTGTATTGGCATTAAGACCTGGTCAAACTCTTTCCA-
* * * * *
1583219 TCTCGTTTGATTGTATTGGCATTAGGACCTAGTCAAACTCTTT-TCATCATTGTTTGACTGTATT
65 CCTCGTTTGACTGTATTGGCGTTAGGACCTGGTCAAACT-TTTCTCACCATTGTTTGACTGTATT
1583283 GGCATTAGGACC
129 GGCATTAGGACC
** * ** * ** * **
1583295 TGACCAAATTCTTCTCA-CCTTATTTGACTGTATTGGTGTTATGACCTATTCAAACACTTTTTAC
1 TGGTCAAACTCTTCTCACCCTTATTTGACTGTATTGGCATTAAGACCTGGTCAAACTCTTTCCA-
* * **
1583359 CCTCATTTGACTGTATTGGCGTTAGGACCTGGTCAAACTTTTCTTACCATTGTTTGACTACATTG
65 CCTCGTTTGACTGTATTGGCGTTAGGACCTGGTCAAACTTTTCTCACCATTGTTTGACTGTATTG
** *
1583424 GTGTTAGGACT
130 GCATTAGGACC
* * * * * * *
1583435 TAGTCAAACTTTTCTCACCTTTGTTTGACTATATTGGCATTAAGACCTGGTCAAAATCTTTCTAT
1 TGGTCAAACTCTTCTCACCCTTATTTGACTGTATTGGCATTAAGACCTGGTCAAACTCTTTCCA-
* * * ** * * * *
1583500 CTTCATTTGGCCATATTGGCATTA-GTCTTGGTCAAACTCTTT-TCACC-TTGTTTGGCTGTATT
65 CCTCGTTTGACTGTATTGGCGTTAGGACCTGGTCAAACT-TTTCTCACCATTGTTTGACTGTATT
1583562 GGCATTAGGACC
129 GGCATTAGGACC
* * * * *
1583574 TAGTCAAACTCTT-TCCACCGTCATTTGACCGTATTGGCATT-AGTCCTGGTCAAACTCTTT
1 TGGTCAAACTCTTCT-CACCCTTATTTGACTGTATTGGCATTAAGACCTGGTCAAACTCTTT
1583634 TAATCTTCAC
Statistics
Matches: 502, Mismatches: 107, Indels: 26
0.79 0.17 0.04
Matches are distributed among these distances:
138 18 0.04
139 93 0.19
140 244 0.49
141 96 0.19
142 2 0.00
144 46 0.09
145 3 0.01
ACGTcount: A:0.22, C:0.22, G:0.17, T:0.39
Consensus pattern (140 bp):
TGGTCAAACTCTTCTCACCCTTATTTGACTGTATTGGCATTAAGACCTGGTCAAACTCTTTCCAC
CTCGTTTGACTGTATTGGCGTTAGGACCTGGTCAAACTTTTCTCACCATTGTTTGACTGTATTGG
CATTAGGACC
Found at i:1583541 original size:46 final size:46
Alignment explanation
Indices: 1583465--1583642 Score: 171
Period size: 46 Copynumber: 3.8 Consensus size: 46
1583455 TTGTTTGACT
* *
1583465 ATATTGGCATTAAGACCTGGTCAAAATCTTTCT-ATCTTCATTTGGCC
1 ATATTGGCATT-AGACCTGGTCAAACTCTTT-TAACCTTCATTTGGCC
* * * * *
1583512 ATATTGGCATTAGTCTTGGTCAAACTCTTTTCACCTT-GTTTGGCT
1 ATATTGGCATTAGACCTGGTCAAACTCTTTTAACCTTCATTTGGCC
* * ** * *
1583557 GTATTGGCATTAGGACCTAGTCAAACTCTTTCCACCGTCATTTGACC
1 ATATTGGCATTA-GACCTGGTCAAACTCTTTTAACCTTCATTTGGCC
* * *
1583604 GTATTGGCATTAGTCCTGGTCAAACTCTTTTAATCTTCA
1 ATATTGGCATTAGACCTGGTCAAACTCTTTTAACCTTCA
1583643 CTTGACAAGA
Statistics
Matches: 107, Mismatches: 21, Indels: 7
0.79 0.16 0.05
Matches are distributed among these distances:
45 18 0.17
46 61 0.57
47 28 0.26
ACGTcount: A:0.22, C:0.22, G:0.16, T:0.39
Consensus pattern (46 bp):
ATATTGGCATTAGACCTGGTCAAACTCTTTTAACCTTCATTTGGCC
Found at i:1583866 original size:85 final size:84
Alignment explanation
Indices: 1583693--1584308 Score: 473
Period size: 85 Copynumber: 7.3 Consensus size: 84
1583683 TTTTTCAACG
* * * * * * * *
1583693 TTGTTTACCTATCGGCTTAGTCCTCAATAAACCCTT-TATCCCTTATGGTGACCTGTGAGATCAG
1 TTGTTTACCTGTCGGCTCAGTCCCCGATAAACCCTTCTCT-CC-T-TGGTGACCTGTCAGCTTAG
1583757 TCTCCGGTCAACCTTT-ATCCA
63 TCTCCGGTCAACCTTTCATCCA
* * * * * *
1583778 TCGTTTA-CTAGTTGGCTTAGTCCCCAATAAACTTCTTCTCTCCTTGGTGACCTGTCAGATTAGT
1 TTGTTTACCT-GTCGGCTCAGTCCCCGATAAAC-CCTTCTCTCCTTGGTGACCTGTCAGCTTAGT
* * *
1583842 TTTCGGTCAACCTTTCATCTA
64 CTCCGGTCAACCTTTCATCCA
* * * * * * *
1583863 TCGTTTACTTGTCAGCTCAATCCCCGATAAACCCTTTCTCTCCTTGATGACTTATCAGCTTAGTC
1 TTGTTTACCTGTCGGCTCAGTCCCCGATAAACCC-TTCTCTCCTTGGTGACCTGTCAGCTTAGTC
** *
1583928 TCTAGTCAACGTTTCAT-CA
65 TCCGGTCAACCTTTCATCCA
* * * * * *
1583947 TTTATTTACCTGTCAGCTCAGTCCCCGGTAAACCCCTTCTCTCCTTGGTTACTTGTCAG-TTCAA
1 -TTGTTTACCTGTCGGCTCAGTCCCCGATAAA-CCCTTCTCTCCTTGGTGACCTGTCAGCTT-AG
*
1584011 TCTTCGGTCAACC-TTCATCCA
63 TCTCCGGTCAACCTTTCATCCA
* * * * * * * * *
1584032 TTGTTTATCTATCGACTCAGTCCTCGGTAAACCCTTTCTCTCCTTGGTGACCTATTAGCTCAGCC
1 TTGTTTACCTGTCGGCTCAGTCCCCGATAAACCC-TTCTCTCCTTGGTGACCTGTCAGCTTAGTC
1584097 TCCGGTCAA-CTTTCATCCA
65 TCCGGTCAACCTTTCATCCA
* *
1584116 TTGTTTACCTGTCGGCTCAATCCCCAATAAACCCCTT-TCTCCTTGGTGACCTGTCAGCTTAGTC
1 TTGTTTACCTGTCGGCTCAGTCCCCGATAAA-CCCTTCTCTCCTTGGTGACCTGTCAGCTTAGTC
* *
1584180 TCCGATCAACCTTTCATCAA
65 TCCGGTCAACCTTTCATCCA
* * * * * * * * *
1584200 TTGTTTACCTGTTGGCTTAGTCCTCGGTAAACCCATTAC-C-CTTATGGTGACTTATCAGCTCAT
1 TTGTTTACCTGTCGGCTCAGTCCCCGATAAACCC-TT-CTCTCCT-TGGTGACCTGTCAGCTTAG
* *
1584263 TCTTCGGTCAACCCTTT-ATCCC
63 TCTCCGGTCAA-CCTTTCATCCA
*
1584285 TTGTTTA-CTAGTCGGCTTAGTCCC
1 TTGTTTACCT-GTCGGCTCAGTCCC
1584309 TAGAGAACTC
Statistics
Matches: 425, Mismatches: 85, Indels: 42
0.77 0.15 0.08
Matches are distributed among these distances:
83 38 0.09
84 170 0.40
85 201 0.47
86 14 0.03
87 2 0.00
ACGTcount: A:0.19, C:0.30, G:0.14, T:0.37
Consensus pattern (84 bp):
TTGTTTACCTGTCGGCTCAGTCCCCGATAAACCCTTCTCTCCTTGGTGACCTGTCAGCTTAGTCT
CCGGTCAACCTTTCATCCA
Found at i:1584005 original size:43 final size:43
Alignment explanation
Indices: 1583952--1584179 Score: 134
Period size: 43 Copynumber: 5.4 Consensus size: 43
1583942 CATCATTTAT
1583952 TTACCTGTCAGCTCAGTCCCCGGTAAACCCCTTCTCTCCTTGG
1 TTACCTGTCAGCTCAGTCCCCGGTAAACCCCTTCTCTCCTTGG
* * * ** * * *
1583995 TTACTTGTCAGTTCAATCTTCGGTCAA--CCTTCATC-CATTGT
1 TTACCTGTCAGCTCAGTCCCCGGTAAACCCCTTC-TCTCCTTGG
* * * *
1584036 TTATCTATC-GACTCAGTCCTCGGTAAACCCTTTCTCTCCTTGG
1 TTACCTGTCAG-CTCAGTCCCCGGTAAACCCCTTCTCTCCTTGG
* * * * *
1584079 TGACCTATTAGCTCAG-CCTCCGGTCAA---CTT-TCATCCATTGT
1 TTACCTGTCAGCTCAGTCC-CCGGTAAACCCCTTCTC-TCC-TTGG
* * **
1584120 TTACCTGTCGGCTCAATCCCCAATAAACCCCTT-TCTCCTTGG
1 TTACCTGTCAGCTCAGTCCCCGGTAAACCCCTTCTCTCCTTGG
* *
1584162 TGACCTGTCAGCTTAGTC
1 TTACCTGTCAGCTCAGTC
1584180 TCCGATCAAC
Statistics
Matches: 134, Mismatches: 38, Indels: 27
0.67 0.19 0.14
Matches are distributed among these distances:
39 2 0.01
40 6 0.04
41 46 0.34
42 25 0.19
43 49 0.37
44 6 0.04
ACGTcount: A:0.18, C:0.33, G:0.14, T:0.35
Consensus pattern (43 bp):
TTACCTGTCAGCTCAGTCCCCGGTAAACCCCTTCTCTCCTTGG
Found at i:1586017 original size:164 final size:163
Alignment explanation
Indices: 1585545--1586279 Score: 813
Period size: 165 Copynumber: 4.5 Consensus size: 163
1585535 ATTTTTAAAT
* * *** *
1585545 TACAGGGTTTTCTTCTTCGTAAATTTTTTCAAAAGGATTTTTCTCATTTTTTATTTTTTAAAATT
1 TACAGAGTTTTCTACTTCGTAAATTTTTT-AGGGGGATTTTTCTTATTTTTTA-TTTTTAAAATT
** * * * *
1585610 CATCAAATATTATTATTTAACTTATATTAAATCAGTTTTTAAAAATTTATTCATCTT-CATAAAA
64 CATCAAATATTATTATTTATTTTATAGTAATTCAGTTTTCAAAAATTCATTCAT-TTCCAT-AAA
* *
1585674 TTTTGAATTTTTTCCTTGAAATTTCCCTTTTTTTGAAA
127 TTTTGAATTTTTTCCTTGAAATCT-CCTTTTTTCGAAA
* * * *
1585712 TAC-GAAGTTTTCTACTCCGTAAATTTGTTAGGGGGATTTTTCTTGTTTTTTATTTTTAAAATTT
1 TACAG-AGTTTTCTACTTCGTAAATTTTTTAGGGGGATTTTTCTTATTTTTTATTTTTAAAATTC
* * * * *
1585776 ATCAAATAGTATTATTTATTTTATATTAATTTAGTTTTCAAAAATTCATTCATTCCCATGAATTT
65 ATCAAATATTATTATTTATTTTATAGTAATTCAGTTTTCAAAAATTCATTCATTTCCATAAATTT
* *
1585841 TGAATGTTTTTCCTTTAAATCTCATTTTTTCGAAA
130 TGAAT-TTTTTCCTTGAAATCTCCTTTTTTCGAAA
*
1585876 TACAGAGTTTTCTACTTCGTAAATTTTTTTGGGGGATTTTTCTTATTTTTTGATTTTTAAAATTC
1 TACAGAGTTTTCTACTTCGTAAATTTTTTAGGGGGATTTTTCTTATTTTTT-ATTTTTAAAATTC
* * * * *
1585941 ATCAAATATTATTATTTATTTCATAGTAATTTA-TCTTTCAAAAGTTCTTTCATTTTCATAAATT
65 ATCAAATATTATTATTTATTTTATAGTAATTCAGT-TTTCAAAAATTCATTCATTTCCATAAATT
1586005 TTGAATTTTTTCCTTGAAATC-CCTTTTTTCGAAA
129 TTGAATTTTTTCCTTGAAATCTCCTTTTTTCGAAA
* *
1586039 TACAGAGTTTTCTAC-TCTGTAAATTCTTTT-GGGGAGATTTTTATT-TTTTTCCATTTTTTAAA
1 TACAGAGTTTTCTACTTC-GTAAATT-TTTTAGGGG-GATTTTTCTTATTTTT-TA-TTTTTAAA
* * * * *
1586101 ATTCATAAAATATTATTATTTATTTTATAGAAATTCATTTTTCAAAAATTCATTAATTTCCATTA
61 ATTCATCAAATATTATTATTTATTTTATAGTAATTCAGTTTTCAAAAATTCATTCATTTCCATAA
* * *
1586166 ATTTTGAATTTTTTCCTTAAAATTTCTCTTTTTTCAAAA
126 ATTTTGAATTTTTTCCTTGAAATCTC-CTTTTTTCGAAA
* ** ** *
1586205 TAC-GAAGTTTTCTACTCCGTAAATTTTTCGGGGGGATTTTTCTTGA-TTTAAAGTTTTTTAAAT
1 TACAG-AGTTTTCTACTTCGTAAATTTTTTAGGGGGATTTTTCTT-ATTTTTTA-TTTTTAAAAT
*
1586268 TCATCTAATATT
63 TCATCAAATATT
1586280 GCCATTGAAC
Statistics
Matches: 488, Mismatches: 61, Indels: 40
0.83 0.10 0.07
Matches are distributed among these distances:
162 2 0.00
163 44 0.09
164 179 0.37
165 182 0.37
166 57 0.12
167 24 0.05
ACGTcount: A:0.29, C:0.11, G:0.08, T:0.52
Consensus pattern (163 bp):
TACAGAGTTTTCTACTTCGTAAATTTTTTAGGGGGATTTTTCTTATTTTTTATTTTTAAAATTCA
TCAAATATTATTATTTATTTTATAGTAATTCAGTTTTCAAAAATTCATTCATTTCCATAAATTTT
GAATTTTTTCCTTGAAATCTCCTTTTTTCGAAA
Found at i:1586149 original size:329 final size:328
Alignment explanation
Indices: 1585525--1586279 Score: 895
Period size: 329 Copynumber: 2.3 Consensus size: 328
1585515 TTTTTTTTAG
* * * * *** *
1585525 AATTCCTCTTATTTTTAAATTACAGGGTTTTCTTCTTCGTAAATTTTTTCAAAAGGATTTTTCTC
1 AATT-CTCTT-TTTTCAAAATACAGAGTTTTCTACTTCGTAAATTTTTT-AGGGGGATTTTTCTT
* *
1585590 ATTTTTT-ATTTTTTAAAATTCATCAAATATTATTATTTAACTTATATTAAATCAGTTTTTAAAA
63 ATTTTTTGA-TTTTTAAAATTCATCAAATATTATTATTTAACTTATAGTAAATCAGTTTTCAAAA
*
1585654 ATTTATTCATCTTCATAAAATTTTGAATTTTTTCCTTGAAATTTCCCTTTTTTTGAAATACGAAG
127 ATTTATTCATCTTCATAAAATTTTGAATTTTTTCCTTGAAA-TTCCCTTTTTTCGAAATACGAAG
* * * *
1585719 TTTTCTACTCCGTAAATTTGTTAGGGGGATTTTTCTTGTTTTTTATTTTTAAAATTTATCAAATA
191 TTTTCTACTCCGTAAATTTGTTAGGGGGATTTTTATTGTTTTTCATTTTTAAAATTCATAAAATA
** * *
1585784 GTATTATTTATTTTATATTAATTTAGTTTTCAAAAATTCATTCATTCCCATGAATTTTGAATGTT
256 GTATTATTTATTTTATAGAAATTCAGTTTTCAAAAATTCATTAATTCCCATGAATTTTGAAT-TT
*
1585849 TTTCCTTTA
320 TTTCCTTAA
* *
1585858 AA-TCTCATTTTTTCGAAATACAGAGTTTTCTACTTCGTAAATTTTTTTGGGGGATTTTTCTTAT
1 AATTCTC-TTTTTTCAAAATACAGAGTTTTCTACTTCGTAAATTTTTTAGGGGGATTTTTCTTAT
* * * *
1585922 TTTTTGATTTTTAAAATTCATCAAATATTATTATTT-ATTTCATAGTAATTTA-TCTTTCAAAAG
65 TTTTTGATTTTTAAAATTCATCAAATATTATTATTTAACTT-ATAGTAAATCAGT-TTTCAAAAA
*
1585985 TTCT-TTCATTTTCAT-AAATTTTGAATTTTTTCCTTGAAA-TCCCTTTTTTCGAAATAC-AGAG
128 TT-TATTCATCTTCATAAAATTTTGAATTTTTTCCTTGAAATTCCCTTTTTTCGAAATACGA-AG
* *
1586046 TTTTCTACTCTGTAAATTCT-TTTGGGGAGATTTTTATT-TTTTTCCATTTTTTAAAATTCATAA
191 TTTTCTACTCCGTAAATT-TGTTAGGGG-GATTTTTATTGTTTTT-CA-TTTTTAAAATTCATAA
* * * *
1586109 AATATTATTATTTATTTTATAGAAATTCATTTTTCAAAAATTCATTAATTTCCATTAATTTTGAA
252 AATAGTATTATTTATTTTATAGAAATTCAGTTTTCAAAAATTCATTAATTCCCATGAATTTTGAA
1586174 TTTTTTCCTTAA
317 TTTTTTCCTTAA
* **
1586186 AATTTCTCTTTTTTCAAAATAC-GAAGTTTTCTACTCCGTAAATTTTTCGGGGGGATTTTTCTTG
1 AA-TTCTCTTTTTTCAAAATACAG-AGTTTTCTACTTCGTAAATTTTTTAGGGGGATTTTTCTT-
*** * *
1586250 ATTTAAAG-TTTTTTAAATTCATCTAATATT
63 ATTTTTTGATTTTTAAAATTCATCAAATATT
1586280 GCCATTGAAC
Statistics
Matches: 366, Mismatches: 42, Indels: 32
0.83 0.10 0.07
Matches are distributed among these distances:
326 1 0.00
327 47 0.13
328 24 0.07
329 169 0.46
330 82 0.22
331 38 0.10
332 3 0.01
333 2 0.01
ACGTcount: A:0.29, C:0.11, G:0.08, T:0.52
Consensus pattern (328 bp):
AATTCTCTTTTTTCAAAATACAGAGTTTTCTACTTCGTAAATTTTTTAGGGGGATTTTTCTTATT
TTTTGATTTTTAAAATTCATCAAATATTATTATTTAACTTATAGTAAATCAGTTTTCAAAAATTT
ATTCATCTTCATAAAATTTTGAATTTTTTCCTTGAAATTCCCTTTTTTCGAAATACGAAGTTTTC
TACTCCGTAAATTTGTTAGGGGGATTTTTATTGTTTTTCATTTTTAAAATTCATAAAATAGTATT
ATTTATTTTATAGAAATTCAGTTTTCAAAAATTCATTAATTCCCATGAATTTTGAATTTTTTCCT
TAA
Found at i:1586841 original size:12 final size:10
Alignment explanation
Indices: 1586820--1586855 Score: 54
Period size: 10 Copynumber: 3.4 Consensus size: 10
1586810 GAGAGAAAGA
1586820 AAAAAAATAG
1 AAAAAAATAG
1586830 AAGAAAATATAG
1 AA-AAAA-ATAG
1586842 AAAAAAATAG
1 AAAAAAATAG
1586852 AAAA
1 AAAA
1586856 GCTAGGCCAG
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
10 10 0.42
11 8 0.33
12 6 0.25
ACGTcount: A:0.78, C:0.00, G:0.11, T:0.11
Consensus pattern (10 bp):
AAAAAAATAG
Found at i:1588401 original size:22 final size:22
Alignment explanation
Indices: 1588373--1588415 Score: 86
Period size: 22 Copynumber: 2.0 Consensus size: 22
1588363 CTTGGGCTCC
1588373 TCTAACTCCAAATTAGGTCTAT
1 TCTAACTCCAAATTAGGTCTAT
1588395 TCTAACTCCAAATTAGGTCTA
1 TCTAACTCCAAATTAGGTCTA
1588416 CTTTCAAATA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.33, C:0.23, G:0.09, T:0.35
Consensus pattern (22 bp):
TCTAACTCCAAATTAGGTCTAT
Found at i:1592317 original size:20 final size:20
Alignment explanation
Indices: 1592294--1592358 Score: 81
Period size: 20 Copynumber: 3.6 Consensus size: 20
1592284 ACTTTCAGAT
1592294 GTATCGATACATAATGCACA
1 GTATCGATACATAATGCACA
1592314 GTATCGATACAT--T-----
1 GTATCGATACATAATGCACA
1592327 GTATCGATACATAATGCACA
1 GTATCGATACATAATGCACA
1592347 GTATCGATACAT
1 GTATCGATACAT
1592359 TGTATCGATA
Statistics
Matches: 38, Mismatches: 0, Indels: 14
0.73 0.00 0.27
Matches are distributed among these distances:
13 12 0.32
15 1 0.03
18 1 0.03
20 24 0.63
ACGTcount: A:0.37, C:0.18, G:0.15, T:0.29
Consensus pattern (20 bp):
GTATCGATACATAATGCACA
Found at i:1592332 original size:13 final size:13
Alignment explanation
Indices: 1592314--1592371 Score: 56
Period size: 13 Copynumber: 4.9 Consensus size: 13
1592304 ATAATGCACA
1592314 GTATCGATACATT
1 GTATCGATACATT
1592327 GTATCGATACA-T
1 GTATCGATACATT
* *
1592339 -AAT-G-CACA--
1 GTATCGATACATT
1592347 GTATCGATACATT
1 GTATCGATACATT
1592360 GTATCGATACAT
1 GTATCGATACAT
1592372 GACCAAATGT
Statistics
Matches: 36, Mismatches: 4, Indels: 10
0.72 0.08 0.20
Matches are distributed among these distances:
9 5 0.14
10 2 0.06
11 5 0.14
12 1 0.03
13 23 0.64
ACGTcount: A:0.34, C:0.17, G:0.16, T:0.33
Consensus pattern (13 bp):
GTATCGATACATT
Found at i:1592335 original size:33 final size:33
Alignment explanation
Indices: 1592293--1592371 Score: 158
Period size: 33 Copynumber: 2.4 Consensus size: 33
1592283 CACTTTCAGA
1592293 TGTATCGATACATAATGCACAGTATCGATACAT
1 TGTATCGATACATAATGCACAGTATCGATACAT
1592326 TGTATCGATACATAATGCACAGTATCGATACAT
1 TGTATCGATACATAATGCACAGTATCGATACAT
1592359 TGTATCGATACAT
1 TGTATCGATACAT
1592372 GACCAAATGT
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 46 1.00
ACGTcount: A:0.35, C:0.18, G:0.15, T:0.32
Consensus pattern (33 bp):
TGTATCGATACATAATGCACAGTATCGATACAT
Found at i:1592384 original size:20 final size:21
Alignment explanation
Indices: 1592359--1592411 Score: 65
Period size: 20 Copynumber: 2.6 Consensus size: 21
1592349 ATCGATACAT
*
1592359 TGTATCGATACATG-ACCA-AA
1 TGTATCGATACATGTA-AAGAA
*
1592379 TGTATCGATACTTGTAAAGAA
1 TGTATCGATACATGTAAAGAA
1592400 TGTATCGATACA
1 TGTATCGATACA
1592412 GGTGATTGGC
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
20 14 0.50
21 14 0.50
ACGTcount: A:0.38, C:0.15, G:0.17, T:0.30
Consensus pattern (21 bp):
TGTATCGATACATGTAAAGAA
Found at i:1592384 original size:33 final size:33
Alignment explanation
Indices: 1592293--1592394 Score: 136
Period size: 33 Copynumber: 3.1 Consensus size: 33
1592283 CACTTTCAGA
* *
1592293 TGTATCGATACATAATGCACAGTATCGATACAT
1 TGTATCGATACATAATCCAAAGTATCGATACAT
* *
1592326 TGTATCGATACATAATGCACAGTATCGATACAT
1 TGTATCGATACATAATCCAAAGTATCGATACAT
*
1592359 TGTATCGATACATGA-CCAAATGTATCGATAC-T
1 TGTATCGATACATAATCCAAA-GTATCGATACAT
1592391 TGTA
1 TGTA
1592395 AAGAATGTAT
Statistics
Matches: 65, Mismatches: 3, Indels: 3
0.92 0.04 0.04
Matches are distributed among these distances:
32 8 0.12
33 57 0.88
ACGTcount: A:0.35, C:0.18, G:0.16, T:0.31
Consensus pattern (33 bp):
TGTATCGATACATAATCCAAAGTATCGATACAT
Found at i:1592479 original size:19 final size:21
Alignment explanation
Indices: 1592455--1592505 Score: 72
Period size: 21 Copynumber: 2.5 Consensus size: 21
1592445 TAACTGTTTA
1592455 TATCGATACAT-A-CAAGA-TG
1 TATCGATACATGACCAA-ATTG
1592474 TATCGATACATGACCAAATTG
1 TATCGATACATGACCAAATTG
1592495 TATCGATACAT
1 TATCGATACAT
1592506 TGGCTTGTAA
Statistics
Matches: 29, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
19 11 0.38
20 2 0.07
21 16 0.55
ACGTcount: A:0.39, C:0.18, G:0.14, T:0.29
Consensus pattern (21 bp):
TATCGATACATGACCAAATTG
Found at i:1598269 original size:8 final size:8
Alignment explanation
Indices: 1598256--1598281 Score: 52
Period size: 8 Copynumber: 3.2 Consensus size: 8
1598246 ATTTGATTAA
1598256 ATTTTGTG
1 ATTTTGTG
1598264 ATTTTGTG
1 ATTTTGTG
1598272 ATTTTGTG
1 ATTTTGTG
1598280 AT
1 AT
1598282 GTTGAAAATG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 18 1.00
ACGTcount: A:0.15, C:0.00, G:0.23, T:0.62
Consensus pattern (8 bp):
ATTTTGTG
Found at i:1600352 original size:22 final size:25
Alignment explanation
Indices: 1600324--1600372 Score: 77
Period size: 25 Copynumber: 2.1 Consensus size: 25
1600314 GTGATTAAAG
1600324 GAAA-TTTT-TTT-ATTAAGGGGGA
1 GAAATTTTTATTTGATTAAGGGGGA
1600346 GAAATTTTTATTTGATTAAGGGGGA
1 GAAATTTTTATTTGATTAAGGGGGA
1600371 GA
1 GA
1600373 GAAAAGGAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
22 4 0.17
23 4 0.17
24 3 0.12
25 13 0.54
ACGTcount: A:0.33, C:0.00, G:0.29, T:0.39
Consensus pattern (25 bp):
GAAATTTTTATTTGATTAAGGGGGA
Found at i:1600965 original size:20 final size:21
Alignment explanation
Indices: 1600940--1600992 Score: 65
Period size: 20 Copynumber: 2.6 Consensus size: 21
1600930 ATCGATATAT
*
1600940 TGTATCGATACATG-ACTA-AA
1 TGTATCGATACATGCA-AAGAA
*
1600960 TGTATCGATACTTGCAAAGAA
1 TGTATCGATACATGCAAAGAA
1600981 TGTATCGATACA
1 TGTATCGATACA
1600993 GGTGATTGGT
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
20 14 0.50
21 14 0.50
ACGTcount: A:0.38, C:0.15, G:0.17, T:0.30
Consensus pattern (21 bp):
TGTATCGATACATGCAAAGAA
Found at i:1601054 original size:15 final size:14
Alignment explanation
Indices: 1601034--1601066 Score: 50
Period size: 13 Copynumber: 2.4 Consensus size: 14
1601024 GTATCGATAC
1601034 ATACAAGATGTATCG
1 ATACAA-ATGTATCG
1601049 ATAC-AATGTATCG
1 ATACAAATGTATCG
1601062 ATACA
1 ATACA
1601067 TGACCAAATT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
13 12 0.71
14 1 0.06
15 4 0.24
ACGTcount: A:0.42, C:0.15, G:0.15, T:0.27
Consensus pattern (14 bp):
ATACAAATGTATCG
Found at i:1601059 original size:13 final size:13
Alignment explanation
Indices: 1601041--1601066 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
1601031 TACATACAAG
1601041 ATGTATCGATACA
1 ATGTATCGATACA
1601054 ATGTATCGATACA
1 ATGTATCGATACA
1601067 TGACCAAATT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:1601085 original size:34 final size:32
Alignment explanation
Indices: 1601023--1601087 Score: 96
Period size: 34 Copynumber: 2.0 Consensus size: 32
1601013 CTTAACTGTT
1601023 TGTATCGATACATACAAGATGTATCGATACAA
1 TGTATCGATACATACAAGATGTATCGATACAA
1601055 TGTATCGATACATGACCAA-ATTGTATCGATACA
1 TGTATCGATACAT-A-CAAGA-TGTATCGATACA
1601088 TTGGTTTGTA
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
32 13 0.43
33 2 0.07
34 15 0.50
ACGTcount: A:0.38, C:0.17, G:0.15, T:0.29
Consensus pattern (32 bp):
TGTATCGATACATACAAGATGTATCGATACAA
Found at i:1602728 original size:12 final size:12
Alignment explanation
Indices: 1602713--1602779 Score: 65
Period size: 12 Copynumber: 6.1 Consensus size: 12
1602703 TCATATCTCT
1602713 CCTCCTATCATC
1 CCTCCTATCATC
1602725 CCTCCTATC-T-
1 CCTCCTATCATC
*
1602735 -CTACTATC-T-
1 CCTCCTATCATC
* *
1602744 -CTCCTATCTTT
1 CCTCCTATCATC
1602755 CCTCCTATCATC
1 CCTCCTATCATC
1602767 CCTCCTATCATC
1 CCTCCTATCATC
1602779 C
1 C
1602780 TCTTCTCTCT
Statistics
Matches: 48, Mismatches: 4, Indels: 6
0.83 0.07 0.10
Matches are distributed among these distances:
9 15 0.31
10 1 0.02
11 1 0.02
12 31 0.65
ACGTcount: A:0.15, C:0.46, G:0.00, T:0.39
Consensus pattern (12 bp):
CCTCCTATCATC
Found at i:1602788 original size:42 final size:42
Alignment explanation
Indices: 1602669--1602775 Score: 151
Period size: 42 Copynumber: 2.5 Consensus size: 42
1602659 TTCTTCTCTC
* * * * *
1602669 CTCCTCCTGTCATCCCTCCTCTCTCTATTGTTTCTCATATCT
1 CTCCTCCTATCATCCCTCCTATCTCTACTATCTCTCATATCT
*
1602711 CTCCTCCTATCATCCCTCCTATCTCTACTATCTCTCCTATCT
1 CTCCTCCTATCATCCCTCCTATCTCTACTATCTCTCATATCT
*
1602753 TTCCTCCTATCATCCCTCCTATC
1 CTCCTCCTATCATCCCTCCTATC
1602776 ATCCTCTTCT
Statistics
Matches: 58, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
42 58 1.00
ACGTcount: A:0.12, C:0.44, G:0.02, T:0.42
Consensus pattern (42 bp):
CTCCTCCTATCATCCCTCCTATCTCTACTATCTCTCATATCT
Found at i:1605604 original size:155 final size:156
Alignment explanation
Indices: 1605340--1605913 Score: 543
Period size: 156 Copynumber: 3.7 Consensus size: 156
1605330 AATGAAAAGC
* * * ** * * * *
1605340 TGAACCTATCCCTAAATACCCACCTTCAACATCAAAGCGGACTTGGTGACTACTTAGAACTC-AG
1 TGAACCTAT-CCTAAATACCCACCTTTAGCATAAAAGTAGACCTGGTGACAACCTAGGACTCGA-
* * * *
1605404 TTCTAGAAAAATTAAGAAAATACCCCTAT-GGGATACCTTCAACTTAGAAGTGC-CTGATACCCC
64 TTCTA-AAAAATTACGAAAATGCCCTTATGGGGATACCTTCGACTTAGAAGTGCTC-GATACCCC
*
1605467 TAAAGGACTTGAAAAGGATTATAGCTAGGA
127 TAAAGGACTTAAAAAGGATTATAGCTAGGA
** * * * *
1605497 TGAACCTATCCTAAATACCCATTTTTCGCATAAAAATAGTCCTGGTGACAACGTAGGACTCGATT
1 TGAACCTATCCTAAATACCCACCTTTAGCATAAAAGTAGACCTGGTGACAACCTAGGACTCGATT
* *
1605562 TTAAAAAATTATGAAAATGCCCTTA-GGGGATACCTTCGACTTAGAAGTGCTCGATACCTCC-AA
66 CTAAAAAATTACGAAAATGCCCTTATGGGGATACCTTCGACTTAGAAGTGCTCGATACC-CCTAA
* ** *
1605625 AGGACTTAAAAAGGATTACAAATGGGA
130 AGGACTTAAAAAGGATTATAGCTAGGA
* * * *
1605652 TGAACCTATCCTAAATGCCCACCTTTAGCATAAAAGCAGACCTAGTGACATCCTAGGACTC-AGT
1 TGAACCTATCCTAAATACCCACCTTTAGCATAAAAGTAGACCTGGTGACAACCTAGGACTCGA-T
* * * * * * *
1605716 TCTATAAAATTACAAAAATGCCCGTATGGGTG-TACCTTCGACATAAAAGTATCTCGATAACCCT
65 TCTAAAAAATTACGAAAATGCCCTTATGGG-GATACCTTCGACTTAGAAGT-GCTCGATACCCCT
** * *
1605780 AAAAAACTTAAAAAGGA-TATAGCTCGGG
128 AAAGGACTTAAAAAGGATTATAGCTAGGA
* * * * * * * *
1605808 TAAACCTATCCTAAATAACCACCCTTGGCATAAAAGTAAACCCGATAACAACCTAGGACTCGATT
1 TGAACCTATCCTAAATACCCACCTTTAGCATAAAAGTAGACCTGGTGACAACCTAGGACTCGATT
* * * *
1605873 GTAAAAAAATACGAAAATGCCCTTATGGGTATATCTTCGAC
66 CTAAAAAATTACGAAAATGCCCTTATGGGGATACCTTCGAC
1605914 ATGAAATATC
Statistics
Matches: 337, Mismatches: 69, Indels: 23
0.79 0.16 0.05
Matches are distributed among these distances:
154 1 0.00
155 145 0.43
156 156 0.46
157 35 0.10
ACGTcount: A:0.37, C:0.22, G:0.16, T:0.25
Consensus pattern (156 bp):
TGAACCTATCCTAAATACCCACCTTTAGCATAAAAGTAGACCTGGTGACAACCTAGGACTCGATT
CTAAAAAATTACGAAAATGCCCTTATGGGGATACCTTCGACTTAGAAGTGCTCGATACCCCTAAA
GGACTTAAAAAGGATTATAGCTAGGA
Found at i:1609492 original size:167 final size:164
Alignment explanation
Indices: 1609259--1609733 Score: 533
Period size: 167 Copynumber: 2.9 Consensus size: 164
1609249 AATAAAAATT
* * * * * *
1609259 TAAAACTCATGAAAATGAATGAATTTTTCAAAATTGATTTAATGTGAATCAAGTGATAATATTTG
1 TAAAACTCATGGAAATGAATGAATTTTTCAAAAATGATTTAATATGAATTAAATAATAATATTTG
* * * *
1609324 ATGAATTTTAAAAATTAAAAACCAAGAAAAAACCCCTGAAAACATTTACGGAGTAGAAAACTCCA
66 ATGAATTTTAAAAATTAAAAA-CAAGAAAAATCCCCTAAAAAAATTTACGAAGTAGAAAACTCCA
*
1609389 TATTTTGAAAATAGAAAAATTTCAAGGAAAAAACTG
130 TATTTTGAAAATAGAAAAATTTCAAGGAAAAAA-AG
* * * * *
1609425 TAAAACTAATGGAAATGAATGATTTTTTTTAAAAATAATTTAATATGAATTAAATAAGAATATTT
1 TAAAACTCATGGAAATGAATGA-ATTTTTCAAAAATGATTTAATATGAATTAAATAATAATATTT
* * ** * *
1609490 GATGAATTTTTAAAATTAAAAACAAGAAAAATTCTTTCAAAAATATTTACGAAGTATAAAACTCC
65 GATGAATTTTAAAAATTAAAAACAAGAAAAATCCCCT-AAAAAAATTTACGAAGTAGAAAACTCC
* * ** * *
1609555 TTA-ATCAAAAATAGAAGAGTTTCAAGGAAAAAAAG
129 ATATTTTGAAAATAGAAAAATTTCAAGGAAAAAAAG
* * * * *
1609590 AAAAACTCAT-GAAGATGAGTGAATTTTTGAAAACTGATTTAAAATGAATTAAATAATAATATTT
1 TAAAACTCATGGAA-ATGAATGAATTTTTCAAAAATGATTTAATATGAATTAAATAATAATATTT
* * *
1609654 GATGAATTTTAAAAATTTTAAATCAATG-AAAATCCTCCCAAAAAAATTTACGAAGTAGAAAACT
65 GATGAATTTTAAAAA-TTAAAAACAA-GAAAAATCC-CCTAAAAAAATTTACGAAGTAGAAAACT
1609718 CCATATTTTGAAAATA
127 CCATATTTTGAAAATA
1609734 TGAGGAATTC
Statistics
Matches: 253, Mismatches: 49, Indels: 14
0.80 0.16 0.04
Matches are distributed among these distances:
164 53 0.21
165 57 0.23
166 64 0.25
167 79 0.31
ACGTcount: A:0.50, C:0.08, G:0.11, T:0.31
Consensus pattern (164 bp):
TAAAACTCATGGAAATGAATGAATTTTTCAAAAATGATTTAATATGAATTAAATAATAATATTTG
ATGAATTTTAAAAATTAAAAACAAGAAAAATCCCCTAAAAAAATTTACGAAGTAGAAAACTCCAT
ATTTTGAAAATAGAAAAATTTCAAGGAAAAAAAG
Found at i:1609817 original size:166 final size:165
Alignment explanation
Indices: 1609145--1609829 Score: 533
Period size: 165 Copynumber: 4.1 Consensus size: 165
1609135 ATGGAAGTTT
** * * * * *
1609145 AATAATAATATTACATGAATTTTAAAAATTT-TAAACTGAAG-AAAATCCCCCCGAAAATACTTA
1 AATAATAATATTTGATGAATTTTAAAAATTTAAAAAC--AAGAAAAATCCTCCCAAAAAAATTTA
* * * * * *
1609208 TGAATTAAAAAACT-TAGT-TTTTCGAAAACAAGAA-AATTTTAA-ATAAAAATTTAAAACTCAT
64 CGAAGTAGAAAACTCCA-TATTTT-GAAAA-TAGAAGAATTTCAAGA-AAAAA-TTAAAACTCAT
* * * * * *
1609269 GAAAATGAATGAATTTTTCAAAATTGATTTAAT-GTGAATCA
124 GAAAATGAATGATTTTTTTAAAACTGATTTTATAATGAATTA
* * * ** *
1609310 AGTGATAATATTTGATGAATTTTAAAAA-TTAAAAACCAAGAAAAAACC-CCTGAAAACATTTAC
1 AATAATAATATTTGATGAATTTTAAAAATTTAAAAA-CAAGAAAAATCCTCCCAAAAAAATTTAC
* * * *
1609373 GGAGTAGAAAACTCCATATTTTGAAAATAGAAAAATTTCAAGGAAAAAACTGTAAAACTAATGGA
65 GAAGTAGAAAACTCCATATTTTGAAAATAGAAGAATTTCAA-GAAAAAA-T-TAAAACTCATGAA
* * *
1609438 AATGAATGATTTTTTTTAAAAATAATTTAAT-ATGAATTA
127 AATGAATGA-TTTTTTTAAAACTGATTTTATAATGAATTA
* * * ** *
1609477 AATAAGAATATTTGATGAATTTTTAAAA-TTAAAAACAAGAAAAATTCTTTCAAAAATATTTACG
1 AATAATAATATTTGATGAATTTTAAAAATTTAAAAACAAGAAAAATCCTCCCAAAAAAATTTACG
* * * ** * ** *
1609541 AAGTATAAAACTCCTTA-ATCAAAAATAGAAGAGTTTCAAGGAAAAAAAGAAAAACTCATGAAGA
66 AAGTAGAAAACTCCATATTTTGAAAATAGAAGAATTTCAA-G-AAAAAATTAAAACTCATGAAAA
* * * *
1609605 TGAGTGAATTTTTGAAAACTGA-TTTAAAATGAATTA
129 TGAATGATTTTTTTAAAACTGATTTTATAATGAATTA
* *
1609641 AATAATAATATTTGATGAATTTTAAAAATTTTAAATCAATG-AAAATCCTCCCAAAAAAATTTAC
1 AATAATAATATTTGATGAATTTTAAAAATTTAAAAACAA-GAAAAATCCTCCCAAAAAAATTTAC
* *
1609705 GAAGTAGAAAACTCCATATTTTGAAAATATGAGGAA-TTCTAA-AAGAAAATTAACAAGTCAT-A
65 GAAGTAGAAAACTCCATATTTTGAAAATA-GAAGAATTTC-AAGAA-AAAATTAA-AACTCATGA
*
1609767 AAATGAAAAGATTTTTTTAAAACTGATTTTATAATG-ATTA
126 AAATG-AATGATTTTTTTAAAACTGATTTTATAATGAATTA
* * *
1609807 AATGATAATATTTAAAGAATTTT
1 AATAATAATATTTGATGAATTTT
1609830 GATGTTAAAA
Statistics
Matches: 415, Mismatches: 83, Indels: 43
0.77 0.15 0.08
Matches are distributed among these distances:
163 7 0.02
164 86 0.21
165 115 0.28
166 108 0.26
167 99 0.24
ACGTcount: A:0.50, C:0.08, G:0.11, T:0.32
Consensus pattern (165 bp):
AATAATAATATTTGATGAATTTTAAAAATTTAAAAACAAGAAAAATCCTCCCAAAAAAATTTACG
AAGTAGAAAACTCCATATTTTGAAAATAGAAGAATTTCAAGAAAAAATTAAAACTCATGAAAATG
AATGATTTTTTTAAAACTGATTTTATAATGAATTA
Found at i:1613035 original size:18 final size:18
Alignment explanation
Indices: 1612996--1613034 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
1612986 ATTAAATTAG
1612996 TTTTCAAAAATTCATTCA
1 TTTTCAAAAATTCATTCA
* *
1613014 TTTTCATAAATT-TTTCA
1 TTTTCAAAAATTCATTCA
1613031 TTTT
1 TTTT
1613035 TTCTTGAATT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
17 8 0.42
18 11 0.58
ACGTcount: A:0.31, C:0.13, G:0.00, T:0.56
Consensus pattern (18 bp):
TTTTCAAAAATTCATTCA
Found at i:1615495 original size:149 final size:151
Alignment explanation
Indices: 1615290--1615579 Score: 342
Period size: 150 Copynumber: 1.9 Consensus size: 151
1615280 ATTTGATTTA
* * * * * *
1615290 TTTTTTTAAAAATTAACTTCAAAGTATTGAAAATTATGTTTCGTACCCGATCG-AAAACTAGGGG
1 TTTTTTTAAAAATTAACTTCAAAGTATTCAAAATTATGTATCGCACCCGAACGAAAAACCAGGAG
1615354 ATACAAAA-GATATT-AAAATTTTTCATACCCCTACGAAAAACCATAGGAA-TATGAAAACATGA
66 ATACAAAATG-TATTAAAAATTTTT-ATACCCCTACGAAAAACCAT-GGAAGTATGAAAACATGA
1615416 CTCGAGTGAGCATAGCGGACCACG
128 CTCGAGTGAGCATAGCGGACCACG
* * *
1615440 TTTTTTTAAAATTTAACTTCTAA-T-TTCAAAAGTTATGTATCGCA-CCTAACGGAAAAACCAGG
1 TTTTTTTAAAAATTAACTTCAAAGTATTCAAAA-TTATGTATCGCACCCGAAC-GAAAAACCAGG
* * * * *
1615502 AGATGCAAAATGTGTTAAAAATTTTTATACCCCTACGGAAAACTATGGAAGTATGAAAGCATGAC
64 AGATACAAAATGTATTAAAAATTTTTATACCCCTACGAAAAACCATGGAAGTATGAAAACATGAC
* *
1615567 TTGAGTGGGCATA
129 TCGAGTGAGCATA
1615580 AAAAGACCAT
Statistics
Matches: 118, Mismatches: 16, Indels: 12
0.81 0.11 0.08
Matches are distributed among these distances:
148 10 0.08
149 16 0.14
150 82 0.69
151 10 0.08
ACGTcount: A:0.39, C:0.16, G:0.17, T:0.29
Consensus pattern (151 bp):
TTTTTTTAAAAATTAACTTCAAAGTATTCAAAATTATGTATCGCACCCGAACGAAAAACCAGGAG
ATACAAAATGTATTAAAAATTTTTATACCCCTACGAAAAACCATGGAAGTATGAAAACATGACTC
GAGTGAGCATAGCGGACCACG
Done.