genome.fa.s1710.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1710
Parameters: 2 7 7 80 10 50 1000
Length:  97758

Tables:   1   

This is table  1  of  1  ( 63 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1--920	62	15.1	62	82	5	1004	31	18	24	24	1.98
1--920	123	7.5	122	82	5	1015	31	18	24	24	1.98
1--922	244	3.8	245	83	5	1068	31	18	24	24	1.98
7066--7485	77	5.5	77	74	11	310	35	13	22	28	1.92
7135--7488	157	2.3	150	80	10	392	35	13	22	28	1.92
7607--7803	65	3.0	65	97	0	376	26	16	34	23	1.95
10502--10913	150	2.7	150	81	5	474	24	20	18	36	1.95
13823--14100	89	3.1	86	76	9	240	31	22	12	33	1.92
13823--14136	89	3.5	88	74	8	228	29	23	13	33	1.93
14909--14975	37	1.9	35	88	11	102	29	25	11	32	1.92
15541--15597	21	2.6	22	88	5	98	36	8	24	29	1.86
15585--15615	10	3.1	10	90	0	53	41	6	29	22	1.78
15745--15782	20	1.9	20	94	0	67	28	10	18	42	1.83
15639--15829	54	3.6	54	95	2	341	26	17	18	37	1.93
15910--15950	21	2.0	21	85	9	57	39	9	12	39	1.76
16449--16508	13	5.1	13	69	22	51	31	18	13	36	1.89
16429--16506	33	2.4	33	89	4	113	32	16	14	37	1.89
16535--16587	19	2.7	20	91	2	90	35	15	18	30	1.92
21390--21445	20	2.8	20	77	0	67	41	10	14	33	1.80
22418--22648	28	8.0	31	81	11	133	25	19	28	27	1.98
22439--23345	29	31.6	29	84	5	921	24	17	30	27	1.97
24594--24631	8	4.9	8	83	3	51	0	2	13	84	0.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38560--38684	20	5.7	20	71	18	97	42	10	14	32	1.79
38560--38734	90	1.9	90	89	1	269	43	10	14	30	1.80
38667--38748	24	3.3	24	67	29	64	46	10	15	26	1.79
39934--39985	20	2.6	21	76	14	56	40	0	23	36	1.55
48833--48858	13	2.0	13	100	0	52	30	15	15	38	1.88
51115--51152	13	2.9	13	100	0	76	36	15	15	31	1.90
53213--53243	15	2.1	15	93	0	53	12	22	16	48	1.80
55048--55092	21	2.1	21	84	8	56	22	20	4	53	1.63
57305--57329	13	1.9	13	100	0	50	32	16	16	36	1.90
58923--59302	165	2.3	166	90	4	579	27	12	7	52	1.66
59900--59926	11	2.5	11	100	0	54	85	0	14	0	0.61
60502--60557	25	2.2	25	96	0	103	21	12	19	46	1.83
69605--69659	22	2.5	22	100	0	110	61	9	10	18	1.54
70572--70646	20	3.8	20	78	3	71	40	13	13	33	1.83
70569--70646	40	2.0	39	84	2	102	39	14	12	33	1.84
79483--79654	31	5.4	31	70	5	128	21	17	27	33	1.96
79483--79626	33	4.5	33	72	8	109	22	16	27	33	1.95
79472--79643	64	2.7	64	82	3	211	22	18	26	33	1.96
79653--79829	35	5.3	33	79	9	182	36	10	30	22	1.88
80824--80853	14	2.2	14	94	5	53	0	16	0	83	0.65
86349--86469	52	2.3	52	97	0	224	28	18	18	34	1.94
86349--86489	52	2.7	51	90	4	212	30	17	18	33	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
86478--86502	13	1.9	13	100	0	50	36	16	16	32	1.90
86568--86592	13	1.9	13	100	0	50	32	16	16	36	1.90
86546--86612	33	2.0	33	88	0	98	40	13	11	34	1.81
87554--87622	22	3.2	22	63	19	54	30	17	26	26	1.97
87488--88096	49	12.7	49	82	6	750	30	17	25	25	1.97
87483--88101	98	6.5	98	92	3	869	30	17	26	25	1.97
88096--88165	33	2.1	35	91	5	117	21	17	35	25	1.95
88170--89046	34	27.1	32	77	16	600	32	13	34	20	1.91
88170--89045	61	13.5	67	77	15	707	32	13	34	20	1.91
88279--88332	27	2.0	27	92	0	90	22	14	40	22	1.90
88202--89073	98	9.1	97	77	15	495	32	13	33	20	1.91
88335--89045	98	7.4	94	80	13	633	31	13	34	20	1.92
88603--88654	27	1.9	27	96	0	95	17	17	40	25	1.90
88626--88825	104	1.9	107	91	4	334	33	13	34	20	1.90
88804--89005	27	7.0	26	73	20	152	28	15	34	21	1.94
88770--88943	88	2.0	88	88	2	260	28	15	35	21	1.94
91232--91295	27	2.4	27	97	0	119	26	32	12	28	1.93
94544--94597	20	2.7	20	91	5	83	37	18	12	31	1.89
94647--94673	13	2.1	13	100	0	54	40	14	14	29	1.86

Tables:   1

The End!