genome.fa.s1712.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1712
Parameters: 2 7 7 80 10 50 1000
Length:  71401

Tables:   1   

This is table  1  of  1  ( 55 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
704--959	50	5.2	50	83	8	328	34	17	16	30	1.93
704--959	96	2.6	97	86	4	347	34	17	16	30	1.93
1888--1936	23	2.2	22	85	3	62	59	0	2	38	1.09
1908--1985	35	2.2	36	93	6	133	51	7	0	41	1.31
2027--2075	18	2.9	16	80	11	62	44	0	2	53	1.12
2095--2145	7	6.9	8	77	22	58	64	0	0	35	0.94
2095--2146	15	3.5	15	82	12	72	65	0	0	34	0.93
3097--3139	23	1.9	22	90	4	68	34	0	4	60	1.17
3099--3148	23	2.2	23	82	7	57	38	2	6	54	1.37
5055--5127	20	3.6	20	81	3	101	35	13	19	31	1.91
5055--5149	41	2.3	42	94	1	165	37	12	17	31	1.88
5188--5213	13	2.0	13	100	0	52	38	15	15	30	1.88
9273--9303	15	2.1	15	93	0	53	48	16	22	12	1.80
11309--11387	20	3.7	21	75	15	72	26	13	15	44	1.84
11374--11412	13	3.0	13	96	0	69	30	17	15	35	1.91
13853--13925	20	3.6	20	81	3	101	35	13	19	31	1.91
13871--13946	21	3.7	21	78	3	91	40	11	17	30	1.85
13853--13946	41	2.3	41	96	0	170	38	12	18	30	1.88
15218--15265	13	3.7	13	75	8	53	27	6	6	60	1.45
15216--15259	14	3.2	14	77	6	54	29	4	6	59	1.44
15216--15272	27	2.1	27	87	9	82	28	7	5	59	1.45
15218--15278	26	2.3	26	81	13	72	24	8	6	60	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18698--18753	19	2.9	19	86	2	76	33	17	17	30	1.94
25098--25124	13	2.1	13	100	0	54	29	14	14	40	1.86
25079--25179	32	3.1	32	94	1	166	34	11	16	36	1.86
25077--25174	19	5.8	18	69	28	81	33	12	16	37	1.86
25250--25378	52	2.5	52	97	0	249	35	17	17	28	1.93
28883--28908	13	2.0	13	100	0	52	38	15	15	30	1.88
34639--34857	32	7.0	31	79	9	191	18	15	36	28	1.92
34671--34813	64	2.2	64	97	0	268	13	16	39	31	1.87
34676--36749	27	74.9	28	81	7	361	28	15	30	24	1.96
34935--35126	28	6.9	28	83	4	154	23	17	29	30	1.97
34823--35042	117	1.9	116	84	4	300	25	16	28	29	1.97
34804--35955	54	20.9	56	81	6	400	28	15	30	25	1.96
35102--36746	27	60.4	27	84	2	1794	30	15	30	23	1.95
34845--36746	109	17.4	108	84	3	1876	30	15	29	24	1.96
38068--38130	20	3.3	18	79	16	65	9	9	6	74	1.21
38068--38117	20	2.5	20	87	6	66	10	8	8	74	1.24
44716--44770	22	2.5	22	82	8	60	1	20	0	78	0.85
44726--44772	23	2.1	24	88	11	73	0	19	0	80	0.70
44731--44772	10	4.0	10	84	9	57	0	16	0	83	0.65
44733--44772	11	3.5	11	83	6	53	0	15	0	85	0.61
46633--46681	20	2.4	21	86	3	64	40	8	24	26	1.83
52224--52277	20	2.7	20	91	0	81	29	14	18	37	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54491--54533	21	2.1	20	83	12	52	53	6	13	25	1.65
54491--54533	20	2.1	21	83	12	54	53	6	13	25	1.65
56823--56888	33	2.0	34	88	8	100	33	16	13	36	1.88
59466--59507	13	3.2	13	79	0	57	38	11	14	35	1.83
64996--65052	13	3.9	13	72	24	51	35	15	17	31	1.92
64978--65073	32	3.0	32	93	1	165	35	13	16	34	1.88
64978--65071	19	5.6	18	68	28	73	35	13	17	34	1.89
65114--65138	13	1.9	13	100	0	50	32	16	16	36	1.90
65127--65275	52	2.9	51	89	7	228	34	19	17	28	1.95
69349--69397	13	4.2	13	75	24	63	36	18	12	32	1.88
69349--69418	33	2.1	34	89	7	108	34	20	12	32	1.90

Tables:   1

The End!