Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold1716
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 82479
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Found at i:46 original size:19 final size:19
Alignment explanation
Indices: 5--49 Score: 56
Period size: 20 Copynumber: 2.3 Consensus size: 19
1 TTTG
5 CAAAATACTTGTTTTCACTT
1 CAAAATACTTGTTTTCAC-T
*
25 CAAATTACTTCGTTTTCA-T
1 CAAAATACTT-GTTTTCACT
44 CAAAAT
1 CAAAAT
50 CAGCATCAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
19 6 0.27
20 9 0.41
21 7 0.32
ACGTcount: A:0.33, C:0.20, G:0.04, T:0.42
Consensus pattern (19 bp):
CAAAATACTTGTTTTCACT
Found at i:6036 original size:19 final size:19
Alignment explanation
Indices: 6012--6112 Score: 124
Period size: 19 Copynumber: 5.6 Consensus size: 19
6002 TAGCTTACAT
*
6012 TGTATCGATACAAAACTTA
1 TGTATCGATACAACACTTA
*
6031 TGTATCGATACAACACTTG
1 TGTATCGATACAACACTTA
6050 TGTATCGAT---ACA--T-
1 TGTATCGATACAACACTTA
*
6063 TGTATCGATACAACACTCA
1 TGTATCGATACAACACTTA
6082 TGTATCGATACAACACTTTA
1 TGTATCGATACAACAC-TTA
6102 TGTATCGATAC
1 TGTATCGATAC
6113 GAATCGTTGA
Statistics
Matches: 71, Mismatches: 4, Indels: 13
0.81 0.05 0.15
Matches are distributed among these distances:
13 9 0.13
14 1 0.01
16 6 0.08
19 42 0.59
20 13 0.18
ACGTcount: A:0.35, C:0.20, G:0.13, T:0.33
Consensus pattern (19 bp):
TGTATCGATACAACACTTA
Found at i:6068 original size:13 final size:13
Alignment explanation
Indices: 6050--6074 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
6040 ACAACACTTG
6050 TGTATCGATACAT
1 TGTATCGATACAT
6063 TGTATCGATACA
1 TGTATCGATACA
6075 ACACTCATGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:6070 original size:51 final size:52
Alignment explanation
Indices: 6007--6112 Score: 178
Period size: 51 Copynumber: 2.1 Consensus size: 52
5997 GGCAGTAGCT
* *
6007 TACATTGTATCGATACAAAACTTATGTATCGATACAACAC-TTGTGTATCGA
1 TACATTGTATCGATACAAAACTCATGTATCGATACAACACTTTATGTATCGA
*
6058 TACATTGTATCGATACAACACTCATGTATCGATACAACACTTTATGTATCGA
1 TACATTGTATCGATACAAAACTCATGTATCGATACAACACTTTATGTATCGA
6110 TAC
1 TAC
6113 GAATCGTTGA
Statistics
Matches: 51, Mismatches: 3, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
51 38 0.75
52 13 0.25
ACGTcount: A:0.35, C:0.20, G:0.12, T:0.33
Consensus pattern (52 bp):
TACATTGTATCGATACAAAACTCATGTATCGATACAACACTTTATGTATCGA
Found at i:6072 original size:32 final size:32
Alignment explanation
Indices: 6031--6093 Score: 108
Period size: 32 Copynumber: 2.0 Consensus size: 32
6021 ACAAAACTTA
**
6031 TGTATCGATACAACACTTGTGTATCGATACAT
1 TGTATCGATACAACACTCATGTATCGATACAT
6063 TGTATCGATACAACACTCATGTATCGATACA
1 TGTATCGATACAACACTCATGTATCGATACA
6094 ACACTTTATG
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 29 1.00
ACGTcount: A:0.33, C:0.21, G:0.14, T:0.32
Consensus pattern (32 bp):
TGTATCGATACAACACTCATGTATCGATACAT
Found at i:6947 original size:155 final size:155
Alignment explanation
Indices: 6647--6944 Score: 381
Period size: 155 Copynumber: 1.9 Consensus size: 155
6637 CAGATTTGAG
* * * *
6647 TCCTAGGTTGTCATTGGGTTCGCTTTTATGTCGAAGGTAGATATTTAGGATAGGTTCATCTCATC
1 TCCTAGGTTGTCACTAGGTTCGCTTTCATGTCGAAGGTAGATATTTAGGATAGGTTCATCCCATC
*
6712 TATTATCCTTTTTAAATCTTTTAAGGGTACCGGGTACTTTTACATCGAAGGTATCCCCTAGAGGC
66 TATAATCCTTTTTAAATCTTTTAAGGGTACCGGGTACTTTTACATCGAAGGTATCCCCTAGAGGC
*
6777 ATTTTGGTAATTTTTTAGAACCGAA
131 ATTTTCGTAATTTTTTAGAACCGAA
* *
6802 TCCTAGGTTGTCACTAGG-TCTGCTTTCATGTCGAAGGTAGGTATTTAGGATAGGTTCATCCCTT
1 TCCTAGGTTGTCACTAGGTTC-GCTTTCATGTCGAAGGTAGATATTTAGGATAGGTTCATCCCAT
* * * * * * * * *
6866 TTA-AAT-TTTTTTAAGTCTTTTAGGGGTA-TGGGTACTTTTACGTCGAAGTTATTCCTTA-AGA
65 CTATAATCCTTTTTAAATCTTTTAAGGGTACCGGGTACTTTTACATCGAAGGTATCCCCTAGAG-
*
6927 GTATTTTCGTAATTTTTT
129 GCATTTTCGTAATTTTTT
6945 TTTGAATTTA
Statistics
Matches: 123, Mismatches: 18, Indels: 7
0.83 0.12 0.05
Matches are distributed among these distances:
151 2 0.02
152 41 0.33
153 19 0.15
154 4 0.03
155 57 0.46
ACGTcount: A:0.22, C:0.15, G:0.21, T:0.42
Consensus pattern (155 bp):
TCCTAGGTTGTCACTAGGTTCGCTTTCATGTCGAAGGTAGATATTTAGGATAGGTTCATCCCATC
TATAATCCTTTTTAAATCTTTTAAGGGTACCGGGTACTTTTACATCGAAGGTATCCCCTAGAGGC
ATTTTCGTAATTTTTTAGAACCGAA
Found at i:10036 original size:10 final size:10
Alignment explanation
Indices: 10021--10055 Score: 52
Period size: 10 Copynumber: 3.5 Consensus size: 10
10011 AAGAGAAGGA
*
10021 AAAAAAAAAC
1 AAAAAAAAAG
10031 AAAAAAAAAG
1 AAAAAAAAAG
*
10041 AAACAAAAAG
1 AAAAAAAAAG
10051 AAAAA
1 AAAAA
10056 GGAAATTCTG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
10 22 1.00
ACGTcount: A:0.89, C:0.06, G:0.06, T:0.00
Consensus pattern (10 bp):
AAAAAAAAAG
Found at i:10037 original size:14 final size:14
Alignment explanation
Indices: 10020--10055 Score: 54
Period size: 14 Copynumber: 2.5 Consensus size: 14
10010 AAAGAGAAGG
10020 AAAAAAAAAACAAA
1 AAAAAAAAAACAAA
*
10034 AAAAAAGAAACAAA
1 AAAAAAAAAACAAA
10048 AAGAAAAA
1 AA-AAAAA
10056 GGAAATTCTG
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
14 15 0.79
15 4 0.21
ACGTcount: A:0.89, C:0.06, G:0.06, T:0.00
Consensus pattern (14 bp):
AAAAAAAAAACAAA
Found at i:10409 original size:17 final size:17
Alignment explanation
Indices: 10381--10427 Score: 69
Period size: 17 Copynumber: 2.8 Consensus size: 17
10371 TCTCTAAATA
10381 AGAAAAATAAGAAAAAAG
1 AGAAAAA-AAGAAAAAAG
10399 AGAAAAAAAGAAAAAAG
1 AGAAAAAAAGAAAAAAG
*
10416 A-AAAAGAAGAAA
1 AGAAAAAAAGAAA
10428 GAAAAATCAT
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
16 10 0.36
17 11 0.39
18 7 0.25
ACGTcount: A:0.81, C:0.00, G:0.17, T:0.02
Consensus pattern (17 bp):
AGAAAAAAAGAAAAAAG
Found at i:10421 original size:13 final size:13
Alignment explanation
Indices: 10403--10433 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
10393 AAAAAGAGAA
10403 AAAAAGAAAAAAG
1 AAAAAGAAAAAAG
*
10416 AAAAAGAAGAAAG
1 AAAAAGAAAAAAG
10429 AAAAA
1 AAAAA
10434 TCATGAAAAG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.84, C:0.00, G:0.16, T:0.00
Consensus pattern (13 bp):
AAAAAGAAAAAAG
Found at i:10453 original size:9 final size:8
Alignment explanation
Indices: 10380--10432 Score: 63
Period size: 9 Copynumber: 6.2 Consensus size: 8
10370 TTCTCTAAAT
10380 AAGAAAAA
1 AAGAAAAA
10388 TAAGAAAAA
1 -AAGAAAAA
10397 AGAGAAAAA
1 A-AGAAAAA
10406 AAG-AAAA
1 AAGAAAAA
10413 AAGAAAAA
1 AAGAAAAA
10421 GAAGAAAGAA
1 -AAGAAA-AA
10431 AA
1 AA
10433 ATCATGAAAA
Statistics
Matches: 40, Mismatches: 0, Indels: 8
0.83 0.00 0.17
Matches are distributed among these distances:
7 7 0.17
8 7 0.17
9 24 0.60
10 2 0.05
ACGTcount: A:0.81, C:0.00, G:0.17, T:0.02
Consensus pattern (8 bp):
AAGAAAAA
Found at i:10738 original size:18 final size:18
Alignment explanation
Indices: 10715--10757 Score: 59
Period size: 18 Copynumber: 2.3 Consensus size: 18
10705 AAATAAAAAA
10715 AAAAAAGAGAAAAGAAAAGG
1 AAAAAAGAG-AAA-AAAAGG
*
10735 AAAAAAGAGAAAAAATGG
1 AAAAAAGAGAAAAAAAGG
10753 AAAAA
1 AAAAA
10758 GTGAAGCTCT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 10 0.45
19 3 0.14
20 9 0.41
ACGTcount: A:0.77, C:0.00, G:0.21, T:0.02
Consensus pattern (18 bp):
AAAAAAGAGAAAAAAAGG
Found at i:12756 original size:20 final size:20
Alignment explanation
Indices: 12714--12764 Score: 68
Period size: 20 Copynumber: 2.5 Consensus size: 20
12704 GTTGGGCATA
*
12714 ATGTATTGATACAATTCTTC
1 ATGTATTGATACAATTCTCC
12734 ATGTATTGATACAATGTC-CC
1 ATGTATTGATACAAT-TCTCC
*
12754 ATGTATCGATA
1 ATGTATTGATA
12765 TATTTCACTT
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
20 26 0.93
21 2 0.07
ACGTcount: A:0.31, C:0.16, G:0.14, T:0.39
Consensus pattern (20 bp):
ATGTATTGATACAATTCTCC
Found at i:12843 original size:19 final size:20
Alignment explanation
Indices: 12795--12847 Score: 63
Period size: 19 Copynumber: 2.7 Consensus size: 20
12785 CTGCCAGTTT
*
12795 CATGTATCAATACAATTGAG
1 CATGTATCGATACAATTGAG
** *
12815 TGTGTCTCGATACAA-TGAG
1 CATGTATCGATACAATTGAG
12834 CATGTATCGATACA
1 CATGTATCGATACA
12848 TTATATCGAT
Statistics
Matches: 26, Mismatches: 7, Indels: 1
0.76 0.21 0.03
Matches are distributed among these distances:
19 15 0.58
20 11 0.42
ACGTcount: A:0.34, C:0.17, G:0.19, T:0.30
Consensus pattern (20 bp):
CATGTATCGATACAATTGAG
Found at i:13573 original size:17 final size:17
Alignment explanation
Indices: 13551--13584 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
13541 GTTTAAAACA
*
13551 ATTTTCTCCCCCTTTGT
1 ATTTTCTCCCCCATTGT
13568 ATTTTCTCCCCCATTGT
1 ATTTTCTCCCCCATTGT
13585 CAAATGTCAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.09, C:0.35, G:0.06, T:0.50
Consensus pattern (17 bp):
ATTTTCTCCCCCATTGT
Found at i:15801 original size:20 final size:20
Alignment explanation
Indices: 15776--15828 Score: 81
Period size: 20 Copynumber: 2.6 Consensus size: 20
15766 ATTGGGCATA
*
15776 ATGTATCGATACAAT-TCTT
1 ATGTATCGATACAATGTCCT
15795 CATGTATCGATACAATGTCCT
1 -ATGTATCGATACAATGTCCT
15816 ATGTATCGATACA
1 ATGTATCGATACA
15829 TTTCACTTAG
Statistics
Matches: 31, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
20 28 0.90
21 3 0.10
ACGTcount: A:0.32, C:0.19, G:0.13, T:0.36
Consensus pattern (20 bp):
ATGTATCGATACAATGTCCT
Found at i:15900 original size:19 final size:20
Alignment explanation
Indices: 15857--15909 Score: 90
Period size: 19 Copynumber: 2.7 Consensus size: 20
15847 CCGCCAGTTT
15857 CATGTATCGATACAATTGAG
1 CATGTATCGATACAATTGAG
*
15877 TATGTATCGATACAA-TGAG
1 CATGTATCGATACAATTGAG
15896 CATGTATCGATACA
1 CATGTATCGATACA
15910 TTGTATCAAT
Statistics
Matches: 31, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
19 17 0.55
20 14 0.45
ACGTcount: A:0.36, C:0.15, G:0.19, T:0.30
Consensus pattern (20 bp):
CATGTATCGATACAATTGAG
Found at i:16381 original size:81 final size:82
Alignment explanation
Indices: 16246--16408 Score: 247
Period size: 81 Copynumber: 2.0 Consensus size: 82
16236 GTGTTGATGC
* * *
16246 ATCACCAAGCCTAATTTCCTTGAGGCAAGGTGCAGCCCACACATTCTCAATCATATCCCCTTCAT
1 ATCACCAAGCCTAATTTCCTTGAGGCAAGGTGCAACCCACACATTCCCAATCATATCCCCTTCAC
*
16311 CCAACCA-TTGATGGTA
66 CCAACCACTAGATGGTA
* * * *
16327 ATCACTAAGCCTAATTTCCTTGAGGCAAGTTGCAACTCACACATTCCCAATCATATTCCCTTCAC
1 ATCACCAAGCCTAATTTCCTTGAGGCAAGGTGCAACCCACACATTCCCAATCATATCCCCTTCAC
16392 CCAACCACTAGATGGTA
66 CCAACCACTAGATGGTA
16409 CTGATACATC
Statistics
Matches: 73, Mismatches: 8, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
81 65 0.89
82 8 0.11
ACGTcount: A:0.29, C:0.32, G:0.12, T:0.26
Consensus pattern (82 bp):
ATCACCAAGCCTAATTTCCTTGAGGCAAGGTGCAACCCACACATTCCCAATCATATCCCCTTCAC
CCAACCACTAGATGGTA
Found at i:17185 original size:20 final size:20
Alignment explanation
Indices: 17162--17234 Score: 101
Period size: 20 Copynumber: 3.6 Consensus size: 20
17152 ACAATTCAAA
17162 GTATCGATACATGTTGCAAT
1 GTATCGATACATGTTGCAAT
****
17182 GTATCGATACATGAAAAAGAT
1 GTATCGATACATGTTGCA-AT
17203 GTATCGATACATGTTGCAAT
1 GTATCGATACATGTTGCAAT
17223 GTATCGATACAT
1 GTATCGATACAT
17235 AAAAAAAGAT
Statistics
Matches: 44, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
20 28 0.64
21 16 0.36
ACGTcount: A:0.36, C:0.14, G:0.19, T:0.32
Consensus pattern (20 bp):
GTATCGATACATGTTGCAAT
Found at i:17213 original size:41 final size:42
Alignment explanation
Indices: 17162--17256 Score: 174
Period size: 41 Copynumber: 2.3 Consensus size: 42
17152 ACAATTCAAA
*
17162 GTATCGATACATGTTGCAATGTATCGATACAT-GAAAAAGAT
1 GTATCGATACATGTTGCAATGTATCGATACATAAAAAAAGAT
17203 GTATCGATACATGTTGCAATGTATCGATACATAAAAAAAGAT
1 GTATCGATACATGTTGCAATGTATCGATACATAAAAAAAGAT
17245 GTATCGATACAT
1 GTATCGATACAT
17257 TTCTTGGCAG
Statistics
Matches: 52, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
41 32 0.62
42 20 0.38
ACGTcount: A:0.40, C:0.13, G:0.18, T:0.29
Consensus pattern (42 bp):
GTATCGATACATGTTGCAATGTATCGATACATAAAAAAAGAT
Found at i:17313 original size:13 final size:13
Alignment explanation
Indices: 17295--17320 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
17285 TACAGCAAGT
17295 ATGTATCGATACA
1 ATGTATCGATACA
17308 ATGTATCGATACA
1 ATGTATCGATACA
17321 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:19568 original size:21 final size:21
Alignment explanation
Indices: 19535--19579 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
19525 TTGCAAGTTG
*
19535 AAATAAAGAAGTTGGCTAATGA
1 AAATAAAGAAGTTAGCTAA-GA
*
19557 AAATAATG-AGTTAGCTAAGA
1 AAATAAAGAAGTTAGCTAAGA
19577 AAA
1 AAA
19580 ATGAAAACTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 5 0.24
21 9 0.43
22 7 0.33
ACGTcount: A:0.53, C:0.04, G:0.20, T:0.22
Consensus pattern (21 bp):
AAATAAAGAAGTTAGCTAAGA
Found at i:23511 original size:13 final size:13
Alignment explanation
Indices: 23493--23530 Score: 67
Period size: 13 Copynumber: 2.9 Consensus size: 13
23483 CATTTTTATT
23493 TGTATCGATACAA
1 TGTATCGATACAA
*
23506 TGTATCGATACAC
1 TGTATCGATACAA
23519 TGTATCGATACA
1 TGTATCGATACA
23531 GGGTGTTTAT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 24 1.00
ACGTcount: A:0.34, C:0.18, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:25982 original size:20 final size:20
Alignment explanation
Indices: 25959--26031 Score: 101
Period size: 20 Copynumber: 3.6 Consensus size: 20
25949 ACAATTCAAA
25959 GTATCGATACATGTTGCAAT
1 GTATCGATACATGTTGCAAT
****
25979 GTATCGATACATGAAAAAGAT
1 GTATCGATACATGTTGCA-AT
26000 GTATCGATACATGTTGCAAT
1 GTATCGATACATGTTGCAAT
26020 GTATCGATACAT
1 GTATCGATACAT
26032 AAAAAAAGAT
Statistics
Matches: 44, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
20 28 0.64
21 16 0.36
ACGTcount: A:0.36, C:0.14, G:0.19, T:0.32
Consensus pattern (20 bp):
GTATCGATACATGTTGCAAT
Found at i:26010 original size:41 final size:42
Alignment explanation
Indices: 25959--26053 Score: 174
Period size: 41 Copynumber: 2.3 Consensus size: 42
25949 ACAATTCAAA
*
25959 GTATCGATACATGTTGCAATGTATCGATACAT-GAAAAAGAT
1 GTATCGATACATGTTGCAATGTATCGATACATAAAAAAAGAT
26000 GTATCGATACATGTTGCAATGTATCGATACATAAAAAAAGAT
1 GTATCGATACATGTTGCAATGTATCGATACATAAAAAAAGAT
26042 GTATCGATACAT
1 GTATCGATACAT
26054 TTCTTGGCAG
Statistics
Matches: 52, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
41 32 0.62
42 20 0.38
ACGTcount: A:0.40, C:0.13, G:0.18, T:0.29
Consensus pattern (42 bp):
GTATCGATACATGTTGCAATGTATCGATACATAAAAAAAGAT
Found at i:26110 original size:13 final size:13
Alignment explanation
Indices: 26092--26117 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
26082 TACAGCAAGT
26092 ATGTATCGATACA
1 ATGTATCGATACA
26105 ATGTATCGATACA
1 ATGTATCGATACA
26118 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:27189 original size:88 final size:87
Alignment explanation
Indices: 26958--27229 Score: 314
Period size: 88 Copynumber: 3.1 Consensus size: 87
26948 AAACAAACTC
* * * * **
26958 GCCTCTTTCCTATCTAACGTATGGTTACCACCCTAGTCAGATTCTTCTCATTTTGATTTGACATA
1 GCCTCATTCATATCTAA-GTATGGTTACCACCCTGGTCAGATTCTTTTCATTTTGATTTGATGTA
* *
27023 TGGTTACCACCTTGGTCAAATAT
65 TGGTTACCACCCTGGTCAAATCT
* * * * * *
27046 GCCTCTTTC-T-TATACGTATGGTTACCACCCTCGCCAGATTCTTTTTATTTTGATTTGATGTAT
1 GCCTCATTCATATCTAAGTATGGTTACCACCCTGGTCAGATTCTTTTCATTTTGATTTGATGTAT
*
27109 GGTTACCACCCTGGTCAAGTCT
66 GGTTACCACCCTGGTCAAATCT
* * **
27131 GCATCCTTCATATCTGAAGTATGGTTACCACCCTGGTCAGATTCTTTTCATTCCGATTTGATGTA
1 GCCTCATTCATATCT-AAGTATGGTTACCACCCTGGTCAGATTCTTTTCATTTTGATTTGATGTA
* * *
27196 CGGTTACCACCCTTGTTAAATCT
65 TGGTTACCACCCTGGTCAAATCT
27219 GCCTCATTCAT
1 GCCTCATTCAT
27230 GTTTGCCATA
Statistics
Matches: 155, Mismatches: 26, Indels: 6
0.83 0.14 0.03
Matches are distributed among these distances:
85 68 0.44
86 4 0.03
87 3 0.02
88 80 0.52
ACGTcount: A:0.21, C:0.25, G:0.15, T:0.39
Consensus pattern (87 bp):
GCCTCATTCATATCTAAGTATGGTTACCACCCTGGTCAGATTCTTTTCATTTTGATTTGATGTAT
GGTTACCACCCTGGTCAAATCT
Found at i:27201 original size:44 final size:44
Alignment explanation
Indices: 26976--27208 Score: 158
Period size: 44 Copynumber: 5.4 Consensus size: 44
26966 CCTATCTAAC
* * ** *
26976 GTATGGTTACCACCCTAGTCAGATTCTTCTCATTTTGATTTGAC
1 GTATGGTTACCACCCTGGTCAGATTCTTTTCATTCAGATTTGAT
* * * *
27020 ATATGGTTACCACCTTGGTCAAATATGCCTCTTTC-TT---A--T-AC
1 GTATGGTTACCACCCTGGTCAGAT-T--CT-TTTCATTCAGATTTGAT
* * * **
27061 GTATGGTTACCACCCTCGCCAGATTCTTTTTATTTTGATTTGAT
1 GTATGGTTACCACCCTGGTCAGATTCTTTTCATTCAGATTTGAT
* ** * * * *
27105 GTATGGTTACCACCCTGGTCA-AGTCTGCATCCTTCATATCTGAA
1 GTATGGTTACCACCCTGGTCAGATTCT-TTTCATTCAGATTTGAT
*
27149 GTATGGTTACCACCCTGGTCAGATTCTTTTCATTCCGATTTGAT
1 GTATGGTTACCACCCTGGTCAGATTCTTTTCATTCAGATTTGAT
*
27193 GTACGGTTACCACCCT
1 GTATGGTTACCACCCT
27209 TGTTAAATCT
Statistics
Matches: 143, Mismatches: 33, Indels: 26
0.71 0.16 0.13
Matches are distributed among these distances:
37 3 0.02
38 4 0.03
40 1 0.01
41 22 0.15
42 1 0.01
43 5 0.03
44 95 0.66
45 5 0.03
47 4 0.03
48 3 0.02
ACGTcount: A:0.21, C:0.24, G:0.16, T:0.39
Consensus pattern (44 bp):
GTATGGTTACCACCCTGGTCAGATTCTTTTCATTCAGATTTGAT
Found at i:27226 original size:44 final size:44
Alignment explanation
Indices: 27097--27259 Score: 141
Period size: 44 Copynumber: 3.7 Consensus size: 44
27087 TTTTTATTTT
* *
27097 GATTTGATGTATGGTTACCACCCTGGTCAAGTCTGCATCCTTCA
1 GATTTGATGTATGGTTACCACCCTGGTCAAATCTGCATCATTCA
* * * * ** *
27141 TATCTGAAGTATGGTTACCACCCTGGTCAGATTCT-TTTCATTCC
1 GATTTGATGTATGGTTACCACCCTGGTCA-AATCTGCATCATTCA
* * * *
27185 GATTTGATGTACGGTTACCACCCTTGTTAAATCTGCCTCATTCA
1 GATTTGATGTATGGTTACCACCCTGGTCAAATCTGCATCATTCA
*** *
27229 TG-TTTGCCATATGGTTACCGCCCTGGTCAAA
1 -GATTTGATGTATGGTTACCACCCTGGTCAAA
27260 GGATTTGCAT
Statistics
Matches: 91, Mismatches: 25, Indels: 6
0.75 0.20 0.05
Matches are distributed among these distances:
43 4 0.04
44 82 0.90
45 5 0.05
ACGTcount: A:0.21, C:0.25, G:0.18, T:0.36
Consensus pattern (44 bp):
GATTTGATGTATGGTTACCACCCTGGTCAAATCTGCATCATTCA
Found at i:27271 original size:88 final size:88
Alignment explanation
Indices: 27097--27271 Score: 199
Period size: 88 Copynumber: 2.0 Consensus size: 88
27087 TTTTTATTTT
* * *
27097 GATTTGATGTATGGTTACCACCCTGGTCAAGTCTGCATCCTTCATATCTGAAGTATGGTTACCAC
1 GATTTGATGTACGGTTACCACCCTGGTCAAATCTGCATCATTCATATCTGAAGTATGGTTACCAC
* *** *
27162 CCTGGTCAGATTCTTTTCATTCC
66 CCTGGTCAAAGGATTTGCATTCC
* * * * * * *
27185 GATTTGATGTACGGTTACCACCCTTGTTAAATCTGCCTCATTCATGTTTGCCA-TATGGTTACCG
1 GATTTGATGTACGGTTACCACCCTGGTCAAATCTGCATCATTCATATCTG-AAGTATGGTTACCA
27249 CCCTGGTCAAAGGATTTGCATTC
65 CCCTGGTCAAAGGATTTGCATTC
27272 TTGTCCGATG
Statistics
Matches: 71, Mismatches: 15, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
88 70 0.99
89 1 0.01
ACGTcount: A:0.21, C:0.25, G:0.19, T:0.36
Consensus pattern (88 bp):
GATTTGATGTACGGTTACCACCCTGGTCAAATCTGCATCATTCATATCTGAAGTATGGTTACCAC
CCTGGTCAAAGGATTTGCATTCC
Found at i:27523 original size:83 final size:83
Alignment explanation
Indices: 27416--27581 Score: 228
Period size: 83 Copynumber: 2.0 Consensus size: 83
27406 TGGGAGACCC
* * * * *
27416 CTTCACCCTTTGCCTGCCTGTCGACTTTGACCCG-GAAGACTCTTTCACCCTTTGTCTGCCCGTC
1 CTTCACCCTTTACCTGCCTATCGACTTTGACCCGAG-AGACTCCTTCACCCTTTATCTGCCCATC
27480 GGCTTTG-CCCAAGAGACT
65 GGCTTTGACCCAAGAGACT
* * *
27498 CTTCTACCCTTTATCTGCCTATCGACTTTGACCCGAGAGACTCCTTCATCCTTTATCTTCCCATC
1 CTTC-ACCCTTTACCTGCCTATCGACTTTGACCCGAGAGACTCCTTCACCCTTTATCTGCCCATC
27563 GGCTTTGACCCAAGAGACT
65 GGCTTTGACCCAAGAGACT
27582 TCATCTTTTG
Statistics
Matches: 73, Mismatches: 8, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
82 4 0.05
83 57 0.78
84 12 0.16
ACGTcount: A:0.16, C:0.36, G:0.16, T:0.32
Consensus pattern (83 bp):
CTTCACCCTTTACCTGCCTATCGACTTTGACCCGAGAGACTCCTTCACCCTTTATCTGCCCATCG
GCTTTGACCCAAGAGACT
Found at i:27620 original size:39 final size:39
Alignment explanation
Indices: 27541--27622 Score: 92
Period size: 39 Copynumber: 2.1 Consensus size: 39
27531 CGAGAGACTC
* *** * *
27541 CTTCATCCTTTATCTTCCCATCGGCTTTGACCCAAGAGA
1 CTTCATCCTTTATCTACCCATCGGCTCAAACACAAAAGA
* *
27580 CTTCATCTTTTGTCTACCCATCGGCTCAAACACAAAAGA
1 CTTCATCCTTTATCTACCCATCGGCTCAAACACAAAAGA
27619 CTTC
1 CTTC
27623 TCTATTTTTG
Statistics
Matches: 35, Mismatches: 8, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
39 35 1.00
ACGTcount: A:0.24, C:0.33, G:0.11, T:0.32
Consensus pattern (39 bp):
CTTCATCCTTTATCTACCCATCGGCTCAAACACAAAAGA
Found at i:27690 original size:42 final size:41
Alignment explanation
Indices: 27417--27719 Score: 202
Period size: 42 Copynumber: 7.3 Consensus size: 41
27407 GGGAGACCCC
* * *
27417 TTCACCCTTTGCCTGCCTGTCGACTTTGACCCG-GAAGACTCT
1 TTCACCCTTTGTCTGCCCGTCGGCTTTGACCCGAG-AGACT-T
* *
27459 TTCACCCTTTGTCTGCCCGTCGGCTTTG-CCCAAGAGACTC
1 TTCACCCTTTGTCTGCCCGTCGGCTTTGACCCGAGAGACTT
* ** * *
27499 TTCTACCCTTTATCTGCCTATCGACTTTGACCCGAGAGACTCC
1 TTC-ACCCTTTGTCTGCCCGTCGGCTTTGACCCGAGAGACT-T
* * * * *
27542 TTCATCCTTTATCTTCCCATCGGCTTTGACCCAAGAGAC--
1 TTCACCCTTTGTCTGCCCGTCGGCTTTGACCCGAGAGACTT
* * * * *** * * *
27581 TTCATCTTTTGTCTACCCATCGGCTCAAACACAAAAGACTT
1 TTCACCCTTTGTCTGCCCGTCGGCTTTGACCCGAGAGACTT
* ** *
27622 CTCTA-TTTTTGTTTGCCCGTCGGCTTTGACCCGAGAGACGTT
1 TTC-ACCCTTTGTCTGCCCGTCGGCTTTGACCCGAGAGAC-TT
* * * *
27664 TTCACCCTTTGTCTGCCCGTCAGCTTTAACCTGGGAGACTT
1 TTCACCCTTTGTCTGCCCGTCGGCTTTGACCCGAGAGACTT
*
27705 CTTCATCCTTTGTCT
1 -TTCACCCTTTGTCT
27720 AATCTTGATC
Statistics
Matches: 208, Mismatches: 43, Indels: 20
0.77 0.16 0.07
Matches are distributed among these distances:
39 31 0.15
40 3 0.01
41 58 0.28
42 112 0.54
43 4 0.02
ACGTcount: A:0.17, C:0.33, G:0.17, T:0.34
Consensus pattern (41 bp):
TTCACCCTTTGTCTGCCCGTCGGCTTTGACCCGAGAGACTT
Found at i:29895 original size:334 final size:331
Alignment explanation
Indices: 29013--30139 Score: 1295
Period size: 334 Copynumber: 3.4 Consensus size: 331
29003 TTTCTTCATT
*** * * * * ** *
29013 GTAAATTTTTTTCGAGAGGATTTTTCTTAATTTTTAATTTTTAAAATTCATAAAATATTTTTATT
1 GTAAA-TTTTTTCGAGA-GATTTTTCTCGGTTTTCAATTTTTAGAATTCATCAAACATCATCATT
* * * *
29078 T-ATTTTATATTAATTCAGTGTTCAAAAATTCGTTCATTTTCAT-ACGCTTTTGATTTTTTTTCT
64 TGA-TTCATATTAATTCAGT-TTCAAAAATTCATTCATTTTCATGA-GTTTTTGATTTTTTTCCT
* *
29141 TGGAA-TT-TTCTTTTT-TGAAATA-CGATGTTTTCTACTCCGTAAATTTTTTT-GAGGGGATTT
126 TGAAACTTCTT-TTTTTCTGAAATATGGA-GTTTTCTACTCCGTAAATTTTTTTCGAGGGGATTT
* * *
29201 TTTTTTGTTTTCAATTTTTAAAATTCATCAAACATTATTATTTATTTCATATTAATTTAGTTTTC
189 TTCTTAGTTTTCAATTTTTAAAATTCATCAAACATCATTATTTATTTCATATTAATTTAGTTTTC
** * * * *
29266 AAAAATTCATTCATTTTCA-AGA-GCTT-TTGATTTTTCCTTGAAATTTCCCTTTTCTCAAAATA
254 AAAAATTCATTCATTTTCATTCATTCTTATT--TTTTTCCTTGAAACTCCCCTTTTC-CTAAATA
* * * *
29328 TGGTACTTTCAACTCC
316 CGGTATTTTCTACTTC
* * * *
29344 GTAAA-TTTTTCTAGGAGATTTTTCTTGGTTTTCAATTTTTAAAATTCATCAAACATTATCA-TT
1 GTAAATTTTTTCGA-GAGATTTTTCTCGGTTTTCAATTTTTAGAATTCATCAAACATCATCATTT
* * * * *
29407 CATTTCATATTTATTCAG-TTCAAAAATTCATTCATTTTCATAAGTTTTGGATTTTTTT-CTTAA
65 GA-TTCATATTAATTCAGTTTCAAAAATTCATTCATTTTCATGAGTTTTTGATTTTTTTCCTTGA
* ** * *
29470 AACTTCTTTTTTCCCAAAATATGGTGTTTTCTACTCCGTAAA-TTATTTCGAGGGGATTTTTCTT
129 AACTTCTTTTTTTCTGAAATATGGAGTTTTCTACTCCGTAAATTTTTTTCGAGGGGATTTTTCTT
* * * * *
29534 GGTTTTCAATTTTTAAAATTTATCAAACATCATTATTTATTTCAAATTAATTCCA-TTTTCCAAA
194 AGTTTTCAATTTTTAAAATTCATCAAACATCATTATTTATTTCATATTAATT-TAGTTTTCAAAA
*
29598 ATTCATTCATTTTCATTCATTCTTAATTTTTTTTCTTGAAACTCCCCTTTTACCTAAATACGGTA
258 ATTCATTCATTTTCATTCATTCTT-ATTTTTTTCCTTGAAACTCCCCTTTT-CCTAAATACGGTA
29663 TTTTCTACTTC
321 TTTTCTACTTC
* * *
29674 GTAAATTTTTTCGATGAGATTTTTCACGG-TTTCAAATTTTAGAATTCATCAAATATCATCATTT
1 GTAAATTTTTTCGA-GAGATTTTTCTCGGTTTTCAATTTTTAGAATTCATCAAACATCATCATTT
* *
29738 GATTCATAGTAATTCAGTTTATAAAAATTCATTCATTTTCATGAGTTTTTGATTTTTTTCCTTGA
65 GATTCATATTAATTCAGTTT-CAAAAATTCATTCATTTTCATGAGTTTTTGATTTTTTTCCTTGA
*
29803 AACTTCTTTTTTTCTGAAATATGGAGTTTTCTACCCCGTAAATTTTTTTCGAGGGGATTTTTCTT
129 AACTTCTTTTTTTCTGAAATATGGAGTTTTCTACTCCGTAAATTTTTTTCGAGGGGATTTTTCTT
*
29868 AGTTTTTAATTTTTAAAATTCATCAAACATCATT-TCTTATTTCATATTAATTTAGTTTTCAAAA
194 AGTTTTCAATTTTTAAAATTCATCAAACATCATTAT-TTATTTCATATTAATTTAGTTTTCAAAA
** * * **
29932 ATTCATTCATTTTCATTTGTTTTTTATTTTTTACCTTGAAACTCCTATTTTTCCTAAATACGGTA
258 ATTCATTCATTTTCA-TTCATTCTTATTTTTTTCCTTGAAACTCC-CCTTTTCCTAAATACGGTA
29997 TTTTCTA-TTCC
321 TTTTCTACTT-C
* *
30008 GTAATTTTTTTCGAGAAGATTTTTCTCGGTTTTCAATTTTTAGAATTCATTAAACATCATCATTT
1 GTAAATTTTTTCGAG-AGATTTTTCTCGGTTTTCAATTTTTAGAATTCATCAAACATCATCATTT
* * *
30073 GATTCATATTAATTCAGTTTTCAAAAATTCATTCTTTTTCATGAGTTTTT-TTATTTTTTCTTTG
65 GATTCATATTAATTCAG-TTTCAAAAATTCATTCATTTTCATGAGTTTTTGAT-TTTTTTCCTTG
30137 AAA
128 AAA
30140 TCTCCATTTT
Statistics
Matches: 684, Mismatches: 83, Indels: 54
0.83 0.10 0.07
Matches are distributed among these distances:
326 5 0.01
327 46 0.07
328 112 0.16
329 63 0.09
330 89 0.13
331 30 0.04
332 37 0.05
333 46 0.07
334 155 0.23
335 98 0.14
336 3 0.00
ACGTcount: A:0.27, C:0.13, G:0.08, T:0.51
Consensus pattern (331 bp):
GTAAATTTTTTCGAGAGATTTTTCTCGGTTTTCAATTTTTAGAATTCATCAAACATCATCATTTG
ATTCATATTAATTCAGTTTCAAAAATTCATTCATTTTCATGAGTTTTTGATTTTTTTCCTTGAAA
CTTCTTTTTTTCTGAAATATGGAGTTTTCTACTCCGTAAATTTTTTTCGAGGGGATTTTTCTTAG
TTTTCAATTTTTAAAATTCATCAAACATCATTATTTATTTCATATTAATTTAGTTTTCAAAAATT
CATTCATTTTCATTCATTCTTATTTTTTTCCTTGAAACTCCCCTTTTCCTAAATACGGTATTTTC
TACTTC
Found at i:30065 original size:167 final size:164
Alignment explanation
Indices: 29016--30149 Score: 1094
Period size: 167 Copynumber: 6.8 Consensus size: 164
29006 CTTCATTGTA
* ** * * * **
29016 AATTTTTTTCGAGAGGATTTTTCTTAATTTTTAATTTTTAAAATTCATAAAATATTTTTATTTAT
1 AATTTTTTTCGAGGGGATTTTTCTTGGTTTTCAATTTTTAAAATTCATCAAACATCATT-TTTAT
* * * * *
29081 TTTATATTAATTCAGTGTTCAAAAATTCGTTCATTTTCAT-ACGCTTTTGATTTTTTTTCTTGGA
65 TTCATATTAATTCAGTTTTCAAAAATTCATTCATTTTCATGA-GTTTTTGA-TTTTTTCCTT-GA
** * * * *
29145 ATTTTCTTTTTT--GAAATACGATGTTTTCTACTCCGT
127 AACTCCTTTTTTCCTAAATACGGTATTTTCTACTCCGT
* * *
29181 AAATTTTTTT-GAGGGGATTTTTTTTTGTTTTCAATTTTTAAAATTCATCAAACATTATTATTTA
1 -AATTTTTTTCGAGGGGATTTTTCTTGGTTTTCAATTTTTAAAATTCATCAAACATCATT-TTTA
* * *
29245 TTTCATATTAATTTAGTTTTCAAAAATTCATTCATTTTCAAGAGCTTTTGA-TTTTTCCTTGAAA
64 TTTCATATTAATTCAGTTTTCAAAAATTCATTCATTTTCATGAGTTTTTGATTTTTTCCTTGAAA
* * * * * *
29309 TTTCC-CTTTTCTCAAAATATGGTACTTTCAACTCCGT
129 -CTCCTTTTTTC-CTAAATACGGTATTTTCTACTCCGT
* * * * * *
29346 AA-ATTTTTCTAGGAGATTTTTCTTGGTTTTCAATTTTTAAAATTCATCAAACATTATCATTCAT
1 AATTTTTTTCGAGGGGATTTTTCTTGGTTTTCAATTTTTAAAATTCATCAAACATCAT-TTTTAT
* * * * *
29410 TTCATATTTATTCAG--TTCAAAAATTCATTCATTTTCATAAGTTTTGGATTTTTTTCTTAAAAC
65 TTCATATTAATTCAGTTTTCAAAAATTCATTCATTTTCATGAGTTTTTGATTTTTTCCTTGAAAC
* * * *
29473 TTCTTTTTTCCCAAAATATGGTGTTTTCTACTCCGT
130 TCCTTTTTT-CCTAAATACGGTATTTTCTACTCCGT
* * *
29509 AAATTATTTCGAGGGGATTTTTCTTGGTTTTCAATTTTTAAAATTTATCAAACATCATTATTTAT
1 AATTTTTTTCGAGGGGATTTTTCTTGGTTTTCAATTTTTAAAATTCATCAAACATCATT-TTTAT
* * * * * *
29574 TTCAAATTAATTCCA-TTTTCCAAAATTCATTCATTTTCATTCA-TTCTTAATTTTTTTTCTTGA
65 TTCATATTAATT-CAGTTTTCAAAAATTCATTCATTTTCA-TGAGTTTTTGA-TTTTTTCCTTGA
* * *
29637 AACTCCCCTTTTACCTAAATACGGTATTTTCTACTTCGT
127 AACT-CCTTTTTTCCTAAATACGGTATTTTCTACTCCGT
* * * ** * * * *
29676 AAATTTTTTCGATGAGATTTTTCACGG-TTTCAAATTTTAGAATTCATCAAATATCATCATTTGA
1 AATTTTTTTCGAGGGGATTTTTCTTGGTTTTCAATTTTTAAAATTCATCAAACATCAT--TTTTA
*
29740 -TTCATAGTAATTCAGTTTAT-AAAAATTCATTCATTTTCATGAGTTTTTGATTTTTTTCCTTGA
64 TTTCATATTAATTCAGTTT-TCAAAAATTCATTCATTTTCATGAGTTTTTGA-TTTTTTCCTTGA
* * * *
29803 AACTTCTTTTTTTCTGAAATATGG-AGTTTTCTACCCCGT
127 AACTCCTTTTTTCCT-AAATACGGTA-TTTTCTACTCCGT
* *
29842 AAATTTTTTTCGAGGGGATTTTTCTTAGTTTTTAATTTTTAAAATTCATCAAACATCATTTCTTA
1 -AATTTTTTTCGAGGGGATTTTTCTTGGTTTTCAATTTTTAAAATTCATCAAACATCATTT-TTA
* ** *
29907 TTTCATATTAATTTAGTTTTCAAAAATTCATTCATTTTCATTTGTTTTTTATTTTTTACCTTGAA
64 TTTCATATTAATTCAGTTTTCAAAAATTCATTCATTTTCATGAGTTTTTGATTTTTT-CCTTGAA
*
29972 ACTCCTATTTTTCCTAAATACGGTATTTTCTATTCCGT
128 ACTCCT-TTTTTCCTAAATACGGTATTTTCTACTCCGT
** * * * *
30010 AATTTTTTTCGAGAAGATTTTTCTCGGTTTTCAATTTTTAGAATTCATTAAACATCATCATTTGA
1 AATTTTTTTCGAGGGGATTTTTCTTGGTTTTCAATTTTTAAAATTCATCAAACATCAT--TTTTA
* * *
30075 -TTCATATTAATTCAGTTTTCAAAAATTCATTCTTTTTCATGAGTTTTTTTATTTTTTCTTTGAA
64 TTTCATATTAATTCAGTTTTCAAAAATTCATTCATTTTCATGAG-TTTTTGATTTTTTCCTTGAA
*
30139 ATCTCCATTTT
128 A-CTCCTTTTT
30150 CCCAAAAATT
Statistics
Matches: 805, Mismatches: 126, Indels: 73
0.80 0.13 0.07
Matches are distributed among these distances:
162 38 0.05
163 55 0.07
164 127 0.16
165 122 0.15
166 133 0.17
167 196 0.24
168 124 0.15
169 10 0.01
ACGTcount: A:0.27, C:0.14, G:0.08, T:0.51
Consensus pattern (164 bp):
AATTTTTTTCGAGGGGATTTTTCTTGGTTTTCAATTTTTAAAATTCATCAAACATCATTTTTATT
TCATATTAATTCAGTTTTCAAAAATTCATTCATTTTCATGAGTTTTTGATTTTTTCCTTGAAACT
CCTTTTTTCCTAAATACGGTATTTTCTACTCCGT
Found at i:30820 original size:10 final size:10
Alignment explanation
Indices: 30807--30851 Score: 54
Period size: 10 Copynumber: 4.2 Consensus size: 10
30797 AAAAGTGAGC
30807 AAAAAAAGAA
1 AAAAAAAGAA
30817 AAAAAAAGAGA
1 AAAAAAAGA-A
30828 GAAAAACAAGAA
1 -AAAAA-AAGAA
*
30840 AAAATAAGAA
1 AAAAAAAGAA
30850 AA
1 AA
30852 TTTGTTAGCA
Statistics
Matches: 31, Mismatches: 1, Indels: 6
0.82 0.03 0.16
Matches are distributed among these distances:
10 16 0.52
11 5 0.16
12 6 0.19
13 4 0.13
ACGTcount: A:0.82, C:0.02, G:0.13, T:0.02
Consensus pattern (10 bp):
AAAAAAAGAA
Found at i:30823 original size:23 final size:23
Alignment explanation
Indices: 30793--30848 Score: 78
Period size: 23 Copynumber: 2.4 Consensus size: 23
30783 AAAACTCAGC
*
30793 AAAAAAAAGTGAGCAAAAA-AAGA
1 AAAAAAAAGAGAG-AAAAACAAGA
30816 AAAAAAAAGAGAGAAAAACAAGA
1 AAAAAAAAGAGAGAAAAACAAGA
*
30839 AAAAATAAGA
1 AAAAAAAAGA
30849 AAATTTGTTA
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
22 5 0.17
23 25 0.83
ACGTcount: A:0.77, C:0.04, G:0.16, T:0.04
Consensus pattern (23 bp):
AAAAAAAAGAGAGAAAAACAAGA
Found at i:32017 original size:147 final size:146
Alignment explanation
Indices: 31749--32021 Score: 342
Period size: 147 Copynumber: 1.9 Consensus size: 146
31739 TTATCACCTG
* * *
31749 AATTTTTCAAAATTTCTAATATTCCAATGGGTACCCGTAGGAGTATTAAAATTTTTAAAACTTTT
1 AATTTTTCAAAATTTCTAATATTCCAATAGGCACCCGTAGGAGTATGAAAATTTTTAAAACTTTT
* *
31814 CGTATTTTTCTGTTCTCCATTAAGGTACGAAATGAATTTTTTAGGACATAAAAAAATTAAATCAA
66 CGTATTTTTCTGTCCTCCATTAAGGTACGAAATGAACTTTTTAGGACATAAAAAAA-TAAATCAA
31879 GTAAAAATTTTGATCCC
130 GTAAAAATTTTGATCCC
* * * *
31896 AATTTTTCAGAATTT-TCAATATTCCTATAGGCATCCGTAAGG-GTATGAAAATTTTTAAAATTT
1 AATTTTTCAAAATTTCT-AATATTCCAATAGGCACCCGT-AGGAGTATGAAAATTTTTAAAACTT
* *
31959 TTCGTGTCTTTTC-GATCCTCTATTAAGGTACGAAATGAAACTTTTTA-GA-A-AAACAAAATAA
64 TTCGTAT-TTTTCTG-TCCTCCATTAAGGTACGAAATG-AACTTTTTAGGACATAAA-AAAATAA
32020 AT
125 AT
32022 ATTTTAATTA
Statistics
Matches: 109, Mismatches: 11, Indels: 13
0.82 0.08 0.10
Matches are distributed among these distances:
146 9 0.08
147 62 0.57
148 30 0.28
149 8 0.07
ACGTcount: A:0.37, C:0.13, G:0.12, T:0.38
Consensus pattern (146 bp):
AATTTTTCAAAATTTCTAATATTCCAATAGGCACCCGTAGGAGTATGAAAATTTTTAAAACTTTT
CGTATTTTTCTGTCCTCCATTAAGGTACGAAATGAACTTTTTAGGACATAAAAAAATAAATCAAG
TAAAAATTTTGATCCC
Found at i:32546 original size:154 final size:153
Alignment explanation
Indices: 32234--32634 Score: 448
Period size: 154 Copynumber: 2.6 Consensus size: 153
32224 ATTTCAACAT
* * * * * *
32234 TTCACCCCATCTATATCATTTTTAAGTCCTTTAGGGTTACCGGGGTA-TTTTCACGTCGAATGTA
1 TTCATCCCATCTATATCCTTTTTAAGTCCTTTAGGGGTA-C-AGATACTTTT-ACGTCGAAGGTA
* * * * * * * *
32298 TACCCATAAAGGTATTTTCATAATTTTCTAGAACCAACTCCTAGGTCGTCACCGAGTCTACTTTT
63 T-CCCCTAGAGGCATTTTCGTAATTTTTTAGAACCAACTCCTAGATCATCACCGAGTCTACCTTT
*
32363 ATGCCGAAGGTAGATATTTGGGATAGG
127 ATGCCGAAGGTAGATATTTAGGATAGG
*
32390 TTCATCCCTTCTATAATCCTTTTTAAGTCCTTTAGGGGTATCAGATACTTTTACGTCGAAGGTAT
1 TTCATCCCATCTAT-ATCCTTTTTAAGTCCTTTAGGGGTA-CAGATACTTTTACGTCGAAGGTAT
* * * *
32455 CCCCTAGAGGCATTTTCGTAATTTTTTAGAACCGAGTCCTAGATTATCATCGAGT-T-CGCTTTA
64 CCCCTAGAGGCATTTTCGTAATTTTTTAGAACCAACTCCTAGATCATCACCGAGTCTAC-CTTTA
*
32518 TGCTGAAGGTAGATATTTAGGATAGG
128 TGCCGAAGGTAGATATTTAGGATAGG
* * * * *
32544 TTCATCTCATCTATTATCCTCTTTAAATCCTTTAGGGGTACCGAGTACTTTTACCTCGAAGGTAT
1 TTCATCCCATCTA-TATCCTTTTTAAGTCCTTTAGGGGTACAGA-TACTTTTACGTCGAAGGTAT
* *
32609 TCCCTGGAGGCATTTTCGTAATTTTT
64 CCCCTAGAGGCATTTTCGTAATTTTT
32635 CTTGAATTTA
Statistics
Matches: 210, Mismatches: 30, Indels: 12
0.83 0.12 0.05
Matches are distributed among these distances:
153 4 0.02
154 106 0.50
155 45 0.21
156 27 0.13
157 28 0.13
ACGTcount: A:0.24, C:0.20, G:0.18, T:0.38
Consensus pattern (153 bp):
TTCATCCCATCTATATCCTTTTTAAGTCCTTTAGGGGTACAGATACTTTTACGTCGAAGGTATCC
CCTAGAGGCATTTTCGTAATTTTTTAGAACCAACTCCTAGATCATCACCGAGTCTACCTTTATGC
CGAAGGTAGATATTTAGGATAGG
Found at i:36407 original size:60 final size:60
Alignment explanation
Indices: 36329--36829 Score: 367
Period size: 60 Copynumber: 8.3 Consensus size: 60
36319 GAGGAGCAGC
* * * * *
36329 TTGACTGAATACAATCAAGCAAGGTAAGATTTGATCAAGTATAGCCTAATGAAGAAAGAT
1 TTGACTGAATACAGTCAAGCAGGGTAAGATTTGATCAAGTACAGTCAAATGAAGAAAGAT
* * * *
36389 TTGACCGAATACAGTCAAGCAGGGTAAGATTTGATCGAGTACAGTTAAACGAAGAAAGAT
1 TTGACTGAATACAGTCAAGCAGGGTAAGATTTGATCAAGTACAGTCAAATGAAGAAAGAT
* * * * * * *
36449 TTGACCGAATATAGTTGAA-CAGGGTAAGATTTAATCGAGTACAGTCAAATAAAGAAAGAC
1 TTGACTGAATACAG-TCAAGCAGGGTAAGATTTGATCAAGTACAGTCAAATGAAGAAAGAT
* * * * *
36509 TTGATTGAATACAGTCAAACAGGGTAAGATTTGATCAAGTACAGTCAAATGAGGATAGTT
1 TTGACTGAATACAGTCAAGCAGGGTAAGATTTGATCAAGTACAGTCAAATGAAGAAAGAT
* * * * * **
36569 TTAACAGAATACAGTCTAG-AGGGATAAGATTTGATCTAGTACAGTCAAATGAGGCTAG-T
1 TTGACTGAATACAGTCAAGCAGGG-TAAGATTTGATCAAGTACAGTCAAATGAAGAAAGAT
* * * * * * *
36628 CTTGACTGAATACAGTCAAG-AGGGGTAAAATTTGA-CTGAGTATAGTTAAATGAGGATAGTT
1 -TTGACTGAATACAGTCAAGCA-GGGTAAGATTTGATC-AAGTACAGTCAAATGAAGAAAGAT
* * * * *
36689 TTGACTGAATATAGTCAAGCAAAGGCG-AA-ATTTGATCAAGTATATTCAAAT-AAGGAAGGT
1 TTGACTGAATACAGTCAAGC--AGG-GTAAGATTTGATCAAGTACAGTCAAATGAAGAAAGAT
* * * * * * * *
36749 CTTTA-TCGAATACAGTCAA-AAGGGGTAAAATTTAAAT-GAGTACAGTAAAATGAGGAAAGAC
1 -TTGACT-GAATACAGTCAAGCA-GGGTAAGATTT-GATCAAGTACAGTCAAATGAAGAAAGAT
* *
36810 TTGACTAAATACAATCAAGC
1 TTGACTGAATACAGTCAAGC
36830 GAAGGTGAAA
Statistics
Matches: 354, Mismatches: 66, Indels: 41
0.77 0.14 0.09
Matches are distributed among these distances:
58 2 0.01
59 13 0.04
60 286 0.81
61 46 0.13
62 5 0.01
63 2 0.01
ACGTcount: A:0.41, C:0.11, G:0.22, T:0.26
Consensus pattern (60 bp):
TTGACTGAATACAGTCAAGCAGGGTAAGATTTGATCAAGTACAGTCAAATGAAGAAAGAT
Found at i:36418 original size:30 final size:29
Alignment explanation
Indices: 36384--36663 Score: 120
Period size: 30 Copynumber: 9.3 Consensus size: 29
36374 CTAATGAAGA
36384 AAGATTTGACCGAATACAGTCAAGCAGGGT
1 AAGATTTGACCGAATACAGTCAAG-AGGGT
* * * * *
36414 AAGATTTGATCGAGTACAGTTAA-ACGAAGA
1 AAGATTTGACCGAATACAGTCAAGA-G-GGT
* * *
36444 AAGATTTGACCGAATATAGTTGAACAGGGT
1 AAGATTTGACCGAATACAG-TCAAGAGGGT
* * * * ** *
36474 AAGATTTAATCGAGTACAGTCAAATAAAGA
1 AAGATTTGACCGAATACAGTC-AAGAGGGT
* ** *
36504 AAGACTTGATTGAATACAGTCAAACAGGGT
1 AAGATTTGACCGAATACAGTC-AAGAGGGT
* *
36534 AAGATTTGATC-AAGTACAGTCAAATGAGGAT
1 AAGATTTGACCGAA-TACAGTC-AA-GAGGGT
* * * *
36565 -AGTTTTAACAGAATACAGTCTAGAGGGAT
1 AAGATTTGACCGAATACAGTCAAGAGGG-T
* * * *
36594 AAGATTTGATCTAGTACAGTCAAATGAGGCT
1 AAGATTTGACCGAATACAGTC-AA-GAGGGT
*
36625 -AG-TCTTGACTGAATACAGTCAAGAGGGGT
1 AAGAT-TTGACCGAATACAGTCAAGA-GGGT
*
36654 AAAATTTGAC
1 AAGATTTGAC
36664 TGAGTATAGT
Statistics
Matches: 182, Mismatches: 52, Indels: 32
0.68 0.20 0.12
Matches are distributed among these distances:
28 7 0.04
29 12 0.07
30 145 0.80
31 13 0.07
32 5 0.03
ACGTcount: A:0.40, C:0.12, G:0.24, T:0.25
Consensus pattern (29 bp):
AAGATTTGACCGAATACAGTCAAGAGGGT
Found at i:36881 original size:121 final size:121
Alignment explanation
Indices: 36626--36883 Score: 288
Period size: 121 Copynumber: 2.1 Consensus size: 121
36616 AATGAGGCTA
* * * * * * **
36626 GTCTTGACTGAATACAGTCAAGAGGGGTAAAATTTGACTGAGTATAGTTAAATGAGGATAGTTTT
1 GTCTTGACTGAATACAGTCAAAAGGGGTAAAATTTAAATGAGTACAGTAAAATGAGGAAAGACTT
* * * * *
36691 GACTGAATATAGTCAAGCAAAGGCGAAATTTGATCAAGTATATTCAAATAAGGAAG
66 GACTAAATACAATCAAGCAAAGGCGAAATTTGATCAAGTACATTCAAATAAGAAAG
*
36747 GTCTTTA-TCGAATACAGTCAAAAGGGGTAAAATTTAAATGAGTACAGTAAAATGAGGAAAGACT
1 GTCTTGACT-GAATACAGTCAAAAGGGGTAAAATTTAAATGAGTACAGTAAAATGAGGAAAGACT
* * * * **
36811 TGACTAAATACAATCAAGCGAAGGTGAAATTTGATTGAA-TACAGTT-GAATGCGAAAG
65 TGACTAAATACAATCAAGCAAAGGCGAAATTTGA-TCAAGTACA-TTCAAATAAGAAAG
36868 GTCTTGACTGAATACA
1 GTCTTGACTGAATACA
36884 ATAAATGAGA
Statistics
Matches: 112, Mismatches: 21, Indels: 8
0.79 0.15 0.06
Matches are distributed among these distances:
120 1 0.01
121 105 0.94
122 6 0.05
ACGTcount: A:0.40, C:0.10, G:0.23, T:0.27
Consensus pattern (121 bp):
GTCTTGACTGAATACAGTCAAAAGGGGTAAAATTTAAATGAGTACAGTAAAATGAGGAAAGACTT
GACTAAATACAATCAAGCAAAGGCGAAATTTGATCAAGTACATTCAAATAAGAAAG
Found at i:36933 original size:30 final size:29
Alignment explanation
Indices: 36899--37007 Score: 76
Period size: 30 Copynumber: 3.7 Consensus size: 29
36889 TGAGAAAGGT
*
36899 TTTGACCGAATATAGTCAAGCAGGGTAAAA
1 TTTGACCGAATACAGTCAA-CAGGGTAAAA
* * * *
36929 TTTGATCGAGTACAGTCAA-ATGAAGAAAAA
1 TTTGACCGAATACAGTCAACA-G-GGTAAAA
* * *
36959 CTTGACCGAATACAGTCGAACATGGTAAGA
1 TTTGACCGAATACAGTC-AACAGGGTAAAA
* * *
36989 TTTGATCGAGTATAGTCAA
1 TTTGACCGAATACAGTCAA
37008 ATAAGGATAG
Statistics
Matches: 59, Mismatches: 16, Indels: 9
0.70 0.19 0.11
Matches are distributed among these distances:
28 1 0.02
29 3 0.05
30 52 0.88
31 2 0.03
32 1 0.02
ACGTcount: A:0.39, C:0.14, G:0.22, T:0.25
Consensus pattern (29 bp):
TTTGACCGAATACAGTCAACAGGGTAAAA
Found at i:36964 original size:60 final size:59
Alignment explanation
Indices: 36900--37585 Score: 551
Period size: 60 Copynumber: 11.4 Consensus size: 59
36890 GAGAAAGGTT
* * * **
36900 TTGACCGAATATAGTCAAGCAGGGTAAAATTTGATCGAGTACAGTCAAATGAA-GAAAAAC
1 TTGACTGAATACAGTCAAG-AGGGTAAGATTTGATCGAGTACAGTCAAAT-AAGGAAAGTC
* * * * *
36960 TTGACCGAATACAGTCGAACATGGTAAGATTTGATCGAGTATAGTCAAATAAGGATAGTC
1 TTGACTGAATACAGTC-AAGAGGGTAAGATTTGATCGAGTACAGTCAAATAAGGAAAGTC
* * * ** * * ** *
37020 TTGATTAAATACAATCAAGAGGGATAAGATTTGCCCGAGTATAGTCAAATATGGATGGCC
1 TTGACTGAATACAGTCAAGAGGG-TAAGATTTGATCGAGTACAGTCAAATAAGGAAAGTC
* * * * *
37080 TTGATTGAATACAGTCAAAAGGGGTAAGATTTGATCGAGTATAGTCAAATGAGGATAGTC
1 TTGACTGAATACAGTCAAGA-GGGTAAGATTTGATCGAGTACAGTCAAATAAGGAAAGTC
* * * *
37140 TTGACTGAATAAAGTCAAGAGGGGTAAAATTTGATCGAGTACAGTCAAATAAGGATAGAC
1 TTGACTGAATACAGTCAAGA-GGGTAAGATTTGATCGAGTACAGTCAAATAAGGAAAGTC
* *
37200 TTGACTGAATATAGTCAAATGAGGGTGAA-ATTTGATCGAATACAGTCAAATAAGGAAAGTC
1 TTGACTGAATACAGTC-AA-GAGGGT-AAGATTTGATCGAGTACAGTCAAATAAGGAAAGTC
* * * *
37261 TTGA-TCGAATACAATCAAGAAAGGTAAGATTTGA-CTAAGTACAGTCAAATAAGGAAAGCC
1 TTGACT-GAATACAGTCAAG-AGGGTAAGATTTGATC-GAGTACAGTCAAATAAGGAAAGTC
* * * * * * *
37321 TTGACTGAATACAGTCAAGCAAAGGTGAA-ATTTGACCGAATACAATCAAATGAGGAAGGTT
1 TTGACTGAATACAGTCAAG--AGGGT-AAGATTTGATCGAGTACAGTCAAATAAGGAAAGTC
* * * * *
37382 TTGACCGAATACAGTCAAGAAAGGTCAGATTTGATCGAGTACAGTCAAACAAGGATAGTC
1 TTGACTGAATACAGTCAAG-AGGGTAAGATTTGATCGAGTACAGTCAAATAAGGAAAGTC
** * * * * * *
37442 TCAATTAAATACAATCAAGAGGGGTAAGATTTGATTGAGTACAGTCAAATGAGGAAAGAC
1 TTGACTGAATACAGTCAAGA-GGGTAAGATTTGATCGAGTACAGTCAAATAAGGAAAGTC
* * * * * *
37502 TTGACTGAATATAGTTAAGAGAGGGTGAA-ATTTGA-CTGAATATAGTCAAATGAGGAAGGTC
1 TTGACTGAATACAG-TCA-AGAGGGT-AAGATTTGATC-GAGTACAGTCAAATAAGGAAAGTC
* *
37563 TCGA-TCGAATACAGTTAAGAGGG
1 TTGACT-GAATACAGTCAAGAGGG
37586 GTGGTTTTCA
Statistics
Matches: 513, Mismatches: 91, Indels: 45
0.79 0.14 0.07
Matches are distributed among these distances:
59 19 0.04
60 340 0.66
61 142 0.28
62 12 0.02
ACGTcount: A:0.40, C:0.12, G:0.24, T:0.24
Consensus pattern (59 bp):
TTGACTGAATACAGTCAAGAGGGTAAGATTTGATCGAGTACAGTCAAATAAGGAAAGTC
Found at i:37326 original size:181 final size:177
Alignment explanation
Indices: 36914--37585 Score: 611
Period size: 181 Copynumber: 3.7 Consensus size: 177
36904 CCGAATATAG
* * * *
36914 TCAAGCAGGGTAAAATTTGATCGAGTACAGTCAAATGAA-GAAAAACTTGACCGAATACAGTCGA
1 TCAAGAAGGGTAAGATTTGAT-GAGTACAGTCAAAT-AAGGAAAGACTTGACTGAATACAGTC-A
* * * * * * *
36978 ACA-TGGTAAGATTTGATCGAGTATAGTCAAATAAGGATAGTCTTGATTAAATACAATCAAGAGG
63 AGAGGGGTAAAATTTGATCGAGTACAGTCAAATAAGGATAGTCTTGACTGAATACAGTCAAGAGG
** * * * * *
37042 GATAAGATTTGCCCGAGTATAGTCAAATATGGATGGCCTTGATTGAATACAG
128 G-TAA-ATTTGATCGAGTACAGTCAAATAAGGATAGTCTTGATTGAATACAA
* * * * *
37094 TCAA-AAGGGGTAAGATTTGATCGAGTATAGTCAAATGAGGATAGTCTTGACTGAATAAAGTCAA
1 TCAAGAA-GGGTAAGATTTGAT-GAGTACAGTCAAATAAGGAAAGACTTGACTGAATACAGTCAA
* *
37158 GAGGGGTAAAATTTGATCGAGTACAGTCAAATAAGGATAGACTTGACTGAATATAGTCAAATGAG
64 GAGGGGTAAAATTTGATCGAGTACAGTCAAATAAGGATAGTCTTGACTGAATACAGTC-AA-GAG
* * *
37223 GGTGAAATTTGATCGAATACAGTCAAATAAGGAAAGTCTTGATCGAATACAA
127 GGT-AAATTTGATCGAGTACAGTCAAATAAGGATAGTCTTGATTGAATACAA
* * *
37275 TCAAGAAAGGTAAGATTTGACTAAGTACAGTCAAATAAGGAAAGCCTTGACTGAATACAGTCAAG
1 TCAAGAAGGGTAAGATTTGA-TGAGTACAGTCAAATAAGGAAAGACTTGACTGAATACAGTCAAG
** * * * * * * * *
37340 CAAAGGTGAAATTTGACCGAATACAATCAAATGAGGA-AGGTTTTGACCGAATACAGTCAAGAAA
65 -AGGGGTAAAATTTGATCGAGTACAGTCAAATAAGGATA-GTCTTGACTGAATACAGTCAAG-AG
* * ** *
37404 GGTCAGATTTGATCGAGTACAGTCAAACAAGGATAGTCTCAATTAAATACAA
127 GGT-AAATTTGATCGAGTACAGTCAAATAAGGATAGTCTTGATTGAATACAA
* * * *
37456 TCAAGAGGGGTAAGATTTGATTGAGTACAGTCAAATGAGGAAAGACTTGACTGAATATAGTTAAG
1 TCAAGAAGGGTAAGATTTGA-TGAGTACAGTCAAATAAGGAAAGACTTGACTGAATACAGTCAAG
* * * * * *
37521 AGAGGGTGAAATTTGA-CTGAATATAGTCAAATGAGGA-AGGTCTCGA-TCGAATACAGTTAAGA
65 AG-GGGTAAAATTTGATC-GAGTACAGTCAAATAAGGATA-GTCTTGACT-GAATACAGTCAAGA
37583 GGG
126 GGG
37586 GTGGTTTTCA
Statistics
Matches: 405, Mismatches: 73, Indels: 28
0.80 0.14 0.06
Matches are distributed among these distances:
179 5 0.01
180 102 0.25
181 244 0.60
182 54 0.13
ACGTcount: A:0.40, C:0.12, G:0.24, T:0.24
Consensus pattern (177 bp):
TCAAGAAGGGTAAGATTTGATGAGTACAGTCAAATAAGGAAAGACTTGACTGAATACAGTCAAGA
GGGGTAAAATTTGATCGAGTACAGTCAAATAAGGATAGTCTTGACTGAATACAGTCAAGAGGGTA
AATTTGATCGAGTACAGTCAAATAAGGATAGTCTTGATTGAATACAA
Found at i:37349 original size:511 final size:511
Alignment explanation
Indices: 36388--37364 Score: 1316
Period size: 511 Copynumber: 1.9 Consensus size: 511
36378 TGAAGAAAGA
* * * *
36388 TTTGACCGAATACAGTCAAGCAGGGTAAGATTTGATCGAGTACAGTTAAACGAAGAAAGATTTGA
1 TTTGACCGAATACAGTCAAGCAGGGTAAAATTTGATCGAGTACAGTCAAACGAAGAAAAACTTGA
* * *
36453 CCGAATATAGTTGAACAGGGTAAGATTTAATCGAGTACAGTCAAATAAAGAAAGACTTGATTGAA
66 CCGAATACAGTCGAACAGGGTAAGATTTAATCGAGTACAGTCAAATAAAGAAAGACTTGATTAAA
* * **
36518 TACAGTCAAACAGGGTAAGATTTGATCAAGTACAGTCAAATGAGGATAGTTTTAACAGAATACAG
131 TACAATCAAACAGGGTAAGATTTGACCAAGTACAGTCAAATGAGGATAGCCTTAACAGAATACAG
* * * * *
36583 TCTAGAGGGATAAGATTTGATCTAGTACAGTCAAATGAGGCTAGTCTTGACTGAATACAGTCAAG
196 TCAAAAGGGATAAGATTTGATCGAGTACAGTCAAATGAGGATAGTCTTGACTGAATAAAGTCAAG
* * * ** *
36648 AGGGGTAAAATTTGACTGAGTATAGTTAAATGAGGATAGTTTTGACTGAATATAGTCAAGCAAAG
261 AGGGGTAAAATTTGACTGAGTACAGTCAAATAAGGATAGACTTGACTGAATATAGTCAAACAAAG
* * * * * *
36713 GCGAAATTTGATCAAGTATATTCAAATAAGGAAGGTCTTTATCGAATACAGTCAAAAGGGGTAAA
326 GCGAAATTTGATCAAGTACAGTCAAATAAGGAAAGTCTTGATCGAATACAATCAAAAGAGGTAAA
* * *
36778 ATTTAAATGAGTACAGTAAAATGAGGAAAGACTTGACTAAATACAATCAAGCGAAGGTGAAATTT
391 ATTTAAATAAGTACAGTAAAATAAGGAAAGACTTGACTAAATACAATCAAGCAAAGGTGAAATTT
**
36843 GATTGAATACAGTTGAATGCGAAAGGTCTTGACTGAATACAATAAATGAGAAAGGT
456 GACCGAATACAGTTGAATGCGAAAGGTCTTGACTGAATACAATAAATGAGAAAGGT
* *
36899 TTTGACCGAATATAGTCAAGCAGGGTAAAATTTGATCGAGTACAGTCAAATGAAGAAAAACTTGA
1 TTTGACCGAATACAGTCAAGCAGGGTAAAATTTGATCGAGTACAGTCAAACGAAGAAAAACTTGA
* * * * * *
36964 CCGAATACAGTCGAACATGGTAAGATTTGATCGAGTATAGTCAAATAAGGATAGTCTTGATTAAA
66 CCGAATACAGTCGAACAGGGTAAGATTTAATCGAGTACAGTCAAATAAAGAAAGACTTGATTAAA
* * * * * * **
37029 TACAATC-AAGAGGGATAAGATTTGCCCGAGTATAGTCAAAT-ATGGATGGCCTTGATTGAATAC
131 TACAATCAAACAGGG-TAAGATTTGACCAAGTACAGTCAAATGA-GGATAGCCTTAACAGAATAC
* *
37092 AGTCAAAAGGGGTAAGATTTGATCGAGTATAGTCAAATGAGGATAGTCTTGACTGAATAAAGTCA
194 AGTCAAAAGGGATAAGATTTGATCGAGTACAGTCAAATGAGGATAGTCTTGACTGAATAAAGTCA
**
37157 AGAGGGGTAAAATTTGA-TCGAGTACAGTCAAATAAGGATAGACTTGACTGAATATAGTCAAATG
259 AGAGGGGTAAAATTTGACT-GAGTACAGTCAAATAAGGATAGACTTGACTGAATATAGTCAAACA
* *
37221 AGGGTGAAATTTGATCGAA-TACAGTCAAATAAGGAAAGTCTTGATCGAATACAATCAAGAA-AG
323 AAGGCGAAATTTGATC-AAGTACAGTCAAATAAGGAAAGTCTTGATCGAATACAATCAA-AAGAG
* * * * * * *
37284 GTAAGATTTGACTAAGTACAGTCAAATAAGGAAAGCCTTGACTGAATACAGTCAAGCAAAGGTGA
386 GTAAAATTTAAATAAGTACAGTAAAATAAGGAAAGACTTGACTAAATACAATCAAGCAAAGGTGA
37349 AATTTGACCGAATACA
451 AATTTGACCGAATACA
37365 ATCAAATGAG
Statistics
Matches: 399, Mismatches: 62, Indels: 10
0.85 0.13 0.02
Matches are distributed among these distances:
510 8 0.02
511 387 0.97
512 4 0.01
ACGTcount: A:0.40, C:0.11, G:0.23, T:0.25
Consensus pattern (511 bp):
TTTGACCGAATACAGTCAAGCAGGGTAAAATTTGATCGAGTACAGTCAAACGAAGAAAAACTTGA
CCGAATACAGTCGAACAGGGTAAGATTTAATCGAGTACAGTCAAATAAAGAAAGACTTGATTAAA
TACAATCAAACAGGGTAAGATTTGACCAAGTACAGTCAAATGAGGATAGCCTTAACAGAATACAG
TCAAAAGGGATAAGATTTGATCGAGTACAGTCAAATGAGGATAGTCTTGACTGAATAAAGTCAAG
AGGGGTAAAATTTGACTGAGTACAGTCAAATAAGGATAGACTTGACTGAATATAGTCAAACAAAG
GCGAAATTTGATCAAGTACAGTCAAATAAGGAAAGTCTTGATCGAATACAATCAAAAGAGGTAAA
ATTTAAATAAGTACAGTAAAATAAGGAAAGACTTGACTAAATACAATCAAGCAAAGGTGAAATTT
GACCGAATACAGTTGAATGCGAAAGGTCTTGACTGAATACAATAAATGAGAAAGGT
Found at i:37535 original size:121 final size:119
Alignment explanation
Indices: 36877--37588 Score: 534
Period size: 121 Copynumber: 5.9 Consensus size: 119
36867 GGTCTTGACT
* * * * * *
36877 GAATACAAT-AAATGA-GAAAGGTTTTGACCGAATATAGTCAAGCAGGGTAAAATTTGATCGAGT
1 GAATACAGTCAAATGAGGAAA-GTCTTGACTGAATACAGTCAAGAAAGGT-AAATTTGATCGAGT
* * * * *
36940 ACAGTCAAATGAA-GAAAAACTTGACCGAATACAGTCGAACA-TGGT-AAGATTTGATC
64 ACAGTCAAAT-AAGGATAGACTTGACTGAATACAGTC-AAGAGGGGTGAA-ATTTGATC
* * * * * * * * **
36996 GAGTATAGTCAAATAAGGATAGTCTTGATTAAATACAATCAAG-AGGGATAAGATTTGCCCGAGT
1 GAATACAGTCAAATGAGGAAAGTCTTGACTGAATACAGTCAAGAAAGG-TAA-ATTTGATCGAGT
* * * * * *
37060 ATAGTCAAATATGGATGGCCTTGATTGAATACAGTCAAAAGGGGT-AAGATTTGATC
64 ACAGTCAAATAAGGATAGACTTGACTGAATACAGTCAAGAGGGGTGAA-ATTTGATC
* * * * **
37116 GAGTATAGTCAAATGAGGATAGTCTTGACTGAATAAAGTCAAGAGGGGTAAAATTTGATCGAGTA
1 GAATACAGTCAAATGAGGAAAGTCTTGACTGAATACAGTCAAGAAAGGT-AAATTTGATCGAGTA
*
37181 CAGTCAAATAAGGATAGACTTGACTGAATATAGTCAA-ATGAGGGTGAAATTTGATC
65 CAGTCAAATAAGGATAGACTTGACTGAATACAGTCAAGA-G-GGGTGAAATTTGATC
* * *
37237 GAATACAGTCAAATAAGGAAAGTCTTGA-TCGAATACAATCAAGAAAGGTAAGATTTGA-CTAAG
1 GAATACAGTCAAATGAGGAAAGTCTTGACT-GAATACAGTCAAGAAAGGTAA-ATTTGATC-GAG
* * ** *
37300 TACAGTCAAATAAGGAAAGCCTTGACTGAATACAGTCAAGCAAAGGTGAAATTTGACC
63 TACAGTCAAATAAGGATAGACTTGACTGAATACAGTCAAG-AGGGGTGAAATTTGATC
* * * * *
37358 GAATACAATCAAATGAGGAAGGTTTTGACCGAATACAGTCAAGAAAGGTCAGATTTGATCGAGTA
1 GAATACAGTCAAATGAGGAAAGTCTTGACTGAATACAGTCAAGAAAGGT-AAATTTGATCGAGTA
* * ** * * * *
37423 CAGTCAAACAAGGATAGTCTCAATTAAATACAATCAAGAGGGGT-AAGATTTGATT
65 CAGTCAAATAAGGATAGACTTGACTGAATACAGTCAAGAGGGGTGAA-ATTTGATC
* * * * * *
37478 GAGTACAGTCAAATGAGGAAAGACTTGACTGAATATAGTTAAGAGAGGGTGAAATTTGA-CTGAA
1 GAATACAGTCAAATGAGGAAAGTCTTGACTGAATACAGTCAAGA-AAGGT-AAATTTGATC-GAG
* * * * *
37542 TATAGTCAAATGAGGA-AGGTCTCGA-TCGAATACAGTTAAGAGGGGTG
63 TACAGTCAAATAAGGATA-GACTTGACT-GAATACAGTCAAGAGGGGTG
37589 GTTTTCAGTG
Statistics
Matches: 477, Mismatches: 91, Indels: 47
0.78 0.15 0.08
Matches are distributed among these distances:
119 19 0.04
120 207 0.43
121 246 0.52
122 4 0.01
123 1 0.00
ACGTcount: A:0.40, C:0.11, G:0.24, T:0.24
Consensus pattern (119 bp):
GAATACAGTCAAATGAGGAAAGTCTTGACTGAATACAGTCAAGAAAGGTAAATTTGATCGAGTAC
AGTCAAATAAGGATAGACTTGACTGAATACAGTCAAGAGGGGTGAAATTTGATC
Found at i:38412 original size:17 final size:19
Alignment explanation
Indices: 38382--38423 Score: 52
Period size: 18 Copynumber: 2.3 Consensus size: 19
38372 TTTTTCATTT
*
38382 TTTTCTTTTACTTTTTCT-A
1 TTTT-TTTTACTTTATCTCA
38401 TTTTTTTT-CTTTATCTCA
1 TTTTTTTTACTTTATCTCA
38419 TTTTT
1 TTTTT
38424 CCTTTTTTCC
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
17 7 0.33
18 10 0.48
19 4 0.19
ACGTcount: A:0.10, C:0.14, G:0.00, T:0.76
Consensus pattern (19 bp):
TTTTTTTTACTTTATCTCA
Found at i:38413 original size:22 final size:22
Alignment explanation
Indices: 38349--38413 Score: 66
Period size: 22 Copynumber: 3.0 Consensus size: 22
38339 CAATATGCCT
38349 CTTTTTCT-TTGTCTTTTTC-TTA
1 CTTTTTCTATT-T-TTTTTCTTTA
*
38371 ATTTTTC-A-TTTTTTTCTTTTA
1 CTTTTTCTATTTTTTTTC-TTTA
38392 CTTTTTCTATTTTTTTTCTTTA
1 CTTTTTCTATTTTTTTTCTTTA
38414 TCTCATTTTT
Statistics
Matches: 36, Mismatches: 2, Indels: 10
0.75 0.04 0.21
Matches are distributed among these distances:
19 6 0.17
20 1 0.03
21 10 0.28
22 11 0.31
23 8 0.22
ACGTcount: A:0.09, C:0.14, G:0.02, T:0.75
Consensus pattern (22 bp):
CTTTTTCTATTTTTTTTCTTTA
Found at i:42839 original size:79 final size:79
Alignment explanation
Indices: 42734--43094 Score: 382
Period size: 79 Copynumber: 4.6 Consensus size: 79
42724 CATTCCCCGA
* * * * * * ** * *
42734 TGAAAAATTTAATATTTTGGAGATAAAAATGGGGTTGGACTATCCCCTCAAAAATGGTAGGGCTA
1 TGAAAAA-TTGATATTTTAGAAATAAAACTAGGGTTGGAGTATCCCCTCAAAAATAATAGGGTTG
*
42799 GAGTATCCCCGATGG
65 GAGTATCCCCGATTG
* ** *
42814 TGAAAAATTGATATTTTGGAAATAAAACCGGGGTTGGAGTATCCCCTCGAAAATAAT-GGGATTG
1 TGAAAAATTGATATTTTAGAAATAAAACTAGGGTTGGAGTATCCCCTCAAAAATAATAGGG-TTG
*
42878 GAGTATCCCCGATTA
65 GAGTATCCCCGATTG
* * * * * *
42893 TGAGAAATTGATGTTTTAGAAATAAAACTAAGATTGGAGTATCCCCTCAGAAATAATGGGGTTGG
1 TGAAAAATTGATATTTTAGAAATAAAACTAGGGTTGGAGTATCCCCTCAAAAATAATAGGGTTGG
*
42958 AGTATCCTCGATTG
66 AGTATCCCCGATTG
* * * * ** **
42972 TGAAAAATCGATGTTTTAGAAATAAAGCCAGGGTTGGAGTATCCCCTCGGAAATAGCAGGGTTGG
1 TGAAAAATTGATATTTTAGAAATAAAACTAGGGTTGGAGTATCCCCTCAAAAATAATAGGGTTGG
*
43037 AGTATCCTCGATTG
66 AGTATCCCCGATTG
** *
43051 TGAAAAATCAATATTTTAAAAATAAAACTAGGGTTGGAGTATCC
1 TGAAAAATTGATATTTTAGAAATAAAACTAGGGTTGGAGTATCC
43095 TCGATTGTAA
Statistics
Matches: 241, Mismatches: 38, Indels: 5
0.85 0.13 0.02
Matches are distributed among these distances:
78 3 0.01
79 228 0.95
80 10 0.04
ACGTcount: A:0.35, C:0.13, G:0.24, T:0.28
Consensus pattern (79 bp):
TGAAAAATTGATATTTTAGAAATAAAACTAGGGTTGGAGTATCCCCTCAAAAATAATAGGGTTGG
AGTATCCCCGATTG
Found at i:43095 original size:51 final size:51
Alignment explanation
Indices: 43029--43145 Score: 162
Period size: 51 Copynumber: 2.3 Consensus size: 51
43019 CGGAAATAGC
* *
43029 AGGGTTGGAGTATCCTCGATTGTGAAAAATCAATATTTTAAAAATAAAACT
1 AGGGTTGGAGTATCCTCGATTGTAAAAAATCAATAGTTTAAAAATAAAACT
* * ** *
43080 AGGGTTGGAGTATCCTCGATTGTAAAAAATCGATGGTTTGGAAATAAAATT
1 AGGGTTGGAGTATCCTCGATTGTAAAAAATCAATAGTTTAAAAATAAAACT
*
43131 GGGGTTGGAGTATCC
1 AGGGTTGGAGTATCC
43146 CCTCGGAAAT
Statistics
Matches: 58, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
51 58 1.00
ACGTcount: A:0.35, C:0.09, G:0.25, T:0.31
Consensus pattern (51 bp):
AGGGTTGGAGTATCCTCGATTGTAAAAAATCAATAGTTTAAAAATAAAACT
Found at i:43188 original size:130 final size:130
Alignment explanation
Indices: 42951--43207 Score: 352
Period size: 130 Copynumber: 2.0 Consensus size: 130
42941 AGAAATAATG
* * *
42951 GGGTTGGAGTATCCTCGATTGTGAAAAATCGATGTTTTAGAAATAAAGCCAGGGTTGGAGTATCC
1 GGGTTGGAGTATCCTCGATTGTAAAAAATCGATGGTTTAGAAATAAAACCAGGGTTGGAGTATCC
* * * * *
43016 CCTCGGAAATAGCAGGGTTGGAGTATCCTCGATTGTGAAAAATCAATATTTTAAAAATAAAACTA
66 CCTCGGAAATAACAGGGTTAGAGTATCCCCAATGGTGAAAAATCAATATTTTAAAAATAAAACTA
* ***
43081 GGGTTGGAGTATCCTCGATTGTAAAAAATCGATGGTTTGGAAATAAAATTGGGGTTGGAGTATCC
1 GGGTTGGAGTATCCTCGATTGTAAAAAATCGATGGTTTAGAAATAAAACCAGGGTTGGAGTATCC
* * *** *
43146 CCTCGGAAATAACGGGGTTAGAGTATCCCCAATGGTGGAAAATTGGTATTTTAGAAATAAAA
66 CCTCGGAAATAACAGGGTTAGAGTATCCCCAATGGTGAAAAATCAATATTTTAAAAATAAAA
43208 ACATGAATGA
Statistics
Matches: 109, Mismatches: 18, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
130 109 1.00
ACGTcount: A:0.34, C:0.12, G:0.26, T:0.28
Consensus pattern (130 bp):
GGGTTGGAGTATCCTCGATTGTAAAAAATCGATGGTTTAGAAATAAAACCAGGGTTGGAGTATCC
CCTCGGAAATAACAGGGTTAGAGTATCCCCAATGGTGAAAAATCAATATTTTAAAAATAAAACTA
Found at i:46315 original size:34 final size:34
Alignment explanation
Indices: 46277--46477 Score: 125
Period size: 34 Copynumber: 5.5 Consensus size: 34
46267 CCTACTTTTT
46277 GAGGACAAAGGAAAAGGAGCACGTCCTGCTCTTC
1 GAGGACAAAGGAAAAGGAGCACGTCCTGCTCTTC
* * * *
46311 GAGGATAAAGAAAAAGAGAATGAAATGGGTCCTGCTCCTT-
1 GAGGACAAAGGAAAAG-G-A-G-CA--CGTCCTGCT-CTTC
* * * *
46351 GAGGACAAAGGAAAAAGGAGTACATCCTACCCTTC
1 GAGGACAAAGG-AAAAGGAGCACGTCCTGCTCTTC
* * * * *
46386 GAGGACAAAAGAAAAAAGGAACCAAAATGCATCCTACTCTTT
1 GAGGAC-AAAG-GAAAAGG-AGC---A--CGTCCTGCTCTTC
*
46428 GAGGACAAAGGAAAAGGAGTACGTCCTGCTCTTC
1 GAGGACAAAGGAAAAGGAGCACGTCCTGCTCTTC
46462 GAGGACAAAGGAAAAG
1 GAGGACAAAGGAAAAG
46478 AGAATGAAAT
Statistics
Matches: 128, Mismatches: 22, Indels: 34
0.70 0.12 0.18
Matches are distributed among these distances:
34 43 0.34
35 12 0.09
36 12 0.09
37 3 0.02
38 2 0.02
39 2 0.02
40 25 0.20
41 12 0.09
42 17 0.13
ACGTcount: A:0.40, C:0.18, G:0.26, T:0.15
Consensus pattern (34 bp):
GAGGACAAAGGAAAAGGAGCACGTCCTGCTCTTC
Found at i:46386 original size:75 final size:75
Alignment explanation
Indices: 46263--46594 Score: 355
Period size: 75 Copynumber: 4.4 Consensus size: 75
46253 AAAAGAAAGA
** * * *
46263 GCATCCTACTTTTTGAGGACAAAGG-AAAAGGAGCACGTCCTGCTCTTCGAGGATAAAGAAAAAG
1 GCATCCTACTCCTTGAGGACAAAGGAAAAAGGAGTACATCCTGCTCTTCGAGGACAAAGAAAAAG
*
46327 AGAATGAAAT
66 AGAATAAAAT
** * * *
46337 GGGTCCTGCTCCTTGAGGACAAAGGAAAAAGGAGTACATCCTACCCTTCGAGGACAAAAGAAAAA
1 GCATCCTACTCCTTGAGGACAAAGGAAAAAGGAGTACATCCTGCTCTTCGAGGAC-AAAGAAAAA
*
46402 -AGGAACCAAAAT
65 GA-GAA-TAAAAT
* * *
46414 GCATCCTACTCTTTGAGGACAAAGG-AAAAGGAGTACGTCCTGCTCTTCGAGGACAAAGGAAAAG
1 GCATCCTACTCCTTGAGGACAAAGGAAAAAGGAGTACATCCTGCTCTTCGAGGACAAAGAAAAAG
*
46478 AGAATGAAAT
66 AGAATAAAAT
*** * * *
46488 GGGCCCTACTCCTTGAGGACAAAGGAAAAAGAAGTAAATCCTGCTTTTCGAGGACAAAGGAAAAA
1 GCATCCTACTCCTTGAGGACAAAGGAAAAAGGAGTACATCCTGCTCTTCGAGGACAAA-G-AAAA
*
46553 AGGGAAATAAAAT
64 AGAG-AATAAAAT
* * *
46566 GCATCATGCTCTTTGAGGACAAAGGAAAA
1 GCATCCTACTCCTTGAGGACAAAGGAAAA
46595 GAAGGAAATT
Statistics
Matches: 210, Mismatches: 39, Indels: 14
0.80 0.15 0.05
Matches are distributed among these distances:
74 45 0.21
75 64 0.30
76 40 0.19
77 31 0.15
78 30 0.14
ACGTcount: A:0.40, C:0.17, G:0.24, T:0.18
Consensus pattern (75 bp):
GCATCCTACTCCTTGAGGACAAAGGAAAAAGGAGTACATCCTGCTCTTCGAGGACAAAGAAAAAG
AGAATAAAAT
Found at i:46538 original size:151 final size:152
Alignment explanation
Indices: 46263--46595 Score: 515
Period size: 151 Copynumber: 2.2 Consensus size: 152
46253 AAAAGAAAGA
* *
46263 GCATCCTACTTTTTGAGGACAAAGGAAAAGGAGCACGTCCTGCTCTTCGAGGATAAAGAAAAAGA
1 GCATCCTACTCTTTGAGGACAAAGGAAAAGGAGCACGTCCTGCTCTTCGAGGACAAAGAAAAAGA
* * * *
46328 GAATGAAATGGGTCCTGCTCCTTGAGGACAAAGGAAAAAGGAGTACATCCTACCCTTCGAGGACA
66 GAATGAAATGGGCCCTACTCCTTGAGGACAAAGGAAAAAGAAGTAAATCCTACCCTTCGAGGACA
*
46393 AAAGAAAAAA-GGAACCAAAAT
131 AAAGAAAAAAGGGAAACAAAAT
* *
46414 GCATCCTACTCTTTGAGGACAAAGGAAAAGGAGTACGTCCTGCTCTTCGAGGACAAAGGAAAAGA
1 GCATCCTACTCTTTGAGGACAAAGGAAAAGGAGCACGTCCTGCTCTTCGAGGACAAAGAAAAAGA
* **
46479 GAATGAAATGGGCCCTACTCCTTGAGGACAAAGGAAAAAGAAGTAAATCCTGCTTTTCGAGGACA
66 GAATGAAATGGGCCCTACTCCTTGAGGACAAAGGAAAAAGAAGTAAATCCTACCCTTCGAGGACA
* *
46544 AAGGAAAAAAGGGAAATAAAAT
131 AAAGAAAAAAGGGAAACAAAAT
* *
46566 GCATCATGCTCTTTGAGGACAAAGGAAAAG
1 GCATCCTACTCTTTGAGGACAAAGGAAAAG
46596 AAGGAAATTA
Statistics
Matches: 165, Mismatches: 16, Indels: 1
0.91 0.09 0.01
Matches are distributed among these distances:
151 128 0.78
152 37 0.22
ACGTcount: A:0.40, C:0.17, G:0.25, T:0.18
Consensus pattern (152 bp):
GCATCCTACTCTTTGAGGACAAAGGAAAAGGAGCACGTCCTGCTCTTCGAGGACAAAGAAAAAGA
GAATGAAATGGGCCCTACTCCTTGAGGACAAAGGAAAAAGAAGTAAATCCTACCCTTCGAGGACA
AAAGAAAAAAGGGAAACAAAAT
Found at i:46548 original size:35 final size:35
Alignment explanation
Indices: 46416--46552 Score: 127
Period size: 35 Copynumber: 3.8 Consensus size: 35
46406 ACCAAAATGC
* * * *
46416 ATCCTACTCTTTGAGGACAAAGG-AAAAGGAGTAC
1 ATCCTGCTCTTCGAGGACAAAGGAAAAAGAAGTAA
*
46450 GTCCTGCTCTTCGAGGACAAAGGAAAAGAGAA-TGAA
1 ATCCTGCTCTTCGAGGACAAAGGAAAA-AGAAGT-AA
*
46486 ATGGGCCCTACTCCTT-GAGGACAAAGGAAAAAGAAGTAA
1 AT----CCTGCT-CTTCGAGGACAAAGGAAAAAGAAGTAA
*
46525 ATCCTGCTTTTCGAGGACAAAGGAAAAA
1 ATCCTGCTCTTCGAGGACAAAGGAAAAA
46553 AGGGAAATAA
Statistics
Matches: 84, Mismatches: 9, Indels: 19
0.75 0.08 0.17
Matches are distributed among these distances:
34 22 0.26
35 25 0.30
36 5 0.06
39 8 0.10
40 21 0.25
41 3 0.04
ACGTcount: A:0.39, C:0.18, G:0.25, T:0.18
Consensus pattern (35 bp):
ATCCTGCTCTTCGAGGACAAAGGAAAAAGAAGTAA
Found at i:46584 original size:43 final size:43
Alignment explanation
Indices: 46529--46625 Score: 126
Period size: 43 Copynumber: 2.3 Consensus size: 43
46519 AAGTAAATCC
*
46529 TGCT-TTTCGAGGACAAAGGAAAA-AAGGGAAATAAAATGCATCA
1 TGCTCTTT-GAGGACAAAGGAAAAGAA-GGAAATAAAACGCATCA
* *
46572 TGCTCTTTGAGGACAAAGGAAAAGAAGGAAATTAAACGCATCC
1 TGCTCTTTGAGGACAAAGGAAAAGAAGGAAATAAAACGCATCA
*
46615 TACTCTTTGAG
1 TGCTCTTTGAG
46626 AACTAAAAGG
Statistics
Matches: 48, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
43 43 0.90
44 5 0.10
ACGTcount: A:0.41, C:0.14, G:0.23, T:0.22
Consensus pattern (43 bp):
TGCTCTTTGAGGACAAAGGAAAAGAAGGAAATAAAACGCATCA
Found at i:46762 original size:61 final size:60
Alignment explanation
Indices: 46666--47117 Score: 537
Period size: 61 Copynumber: 7.5 Consensus size: 60
46656 TTTAAGAGGA
* *
46666 AAAAGG-AAAGTGTCCTGTTCTTTG-GGAACTAGAAGGTGCCACCAACTTATGTGGGCTTT
1 AAAAGGAAAAGTGTCCTGCTCTTTGAGG-ACTAGAAGGTGCCACCAACTTGTGTGGGCTTT
** *
46725 GCAAGGAGAAAGTGTCCTGCTCTTTGAGGACTAGAAGGTGCCACCAACTTGTGTAGGCTTT
1 AAAAGGA-AAAGTGTCCTGCTCTTTGAGGACTAGAAGGTGCCACCAACTTGTGTGGGCTTT
* * * * *
46786 GAAAGG-AAAGCGTCCTACTCTTTGAGGACTGGAAGGTGCCACCAACTTGTGTGGGCTTC
1 AAAAGGAAAAGTGTCCTGCTCTTTGAGGACTAGAAGGTGCCACCAACTTGTGTGGGCTTT
46845 AAAAGGAAAAG-GCATCCTGCTCTTTGAGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTT
1 AAAAGGAAAAGTG--TCCTGCTCTTTGAGGACTAG-AAGGTGCCACCAACTTGTGTGGGCTTT
* * *
46906 AAAAAGAAAAGGTGTCATGCTCTTTGAGGACT-GAAAGGTGCCACCAACTTTTGTGGGCTTT
1 AAAAGGAAAA-GTGTCCTGCTCTTTGAGGACTAG-AAGGTGCCACCAACTTGTGTGGGCTTT
* * * * * *
46967 AAAAAGAAAAGGCGTCCTGCTCTTTGAGGACTGGAAAGTGCCACCCACTTGTGTAGG-TTT
1 AAAAGGAAAA-GTGTCCTGCTCTTTGAGGACTAGAAGGTGCCACCAACTTGTGTGGGCTTT
* *
47027 AAAAGGAAAAG-GCATCCTGCTCTTTGAGGACTAGAAAGTGCCACCAACCTGTGTGGGCTTT
1 AAAAGGAAAAGTG--TCCTGCTCTTTGAGGACTAGAAGGTGCCACCAACTTGTGTGGGCTTT
*
47088 GAAAA-GAAAA-TGTCCTGCTCTTTAAGGACT
1 -AAAAGGAAAAGTGTCCTGCTCTTTGAGGACT
47118 GAAAAGATAA
Statistics
Matches: 349, Mismatches: 29, Indels: 30
0.86 0.07 0.07
Matches are distributed among these distances:
58 1 0.00
59 76 0.22
60 56 0.16
61 207 0.59
62 8 0.02
63 1 0.00
ACGTcount: A:0.28, C:0.19, G:0.27, T:0.26
Consensus pattern (60 bp):
AAAAGGAAAAGTGTCCTGCTCTTTGAGGACTAGAAGGTGCCACCAACTTGTGTGGGCTTT
Found at i:46839 original size:120 final size:121
Alignment explanation
Indices: 46612--47117 Score: 566
Period size: 120 Copynumber: 4.1 Consensus size: 121
46602 ATTAAACGCA
* * *
46612 TCCTACTCTTTGAGAACTAAAAGGTGCCACCAACTTGTGTAGGCTTTAAGAGGAAAAAGGAAA-G
1 TCCTGCTCTTTGAGGACTAGAAGGTGCCACCAACTTGTGTAGGCTTT------AAAAAGGAAAGG
* * * **
46676 TGTCCTGTTCTTTG-GGAACTAGAAGGTGCCACCAACTTATGTGGGCTTTGCAAGGAGAAAGTG
60 CGTCCTGCTCTTTGAGG-ACTAGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGA-AAAGTG
*
46739 TCCTGCTCTTTGAGGACTAGAAGGTGCCACCAACTTGTGTAGGCTTT-GAAAGGAAA-GCGTCCT
1 TCCTGCTCTTTGAGGACTAGAAGGTGCCACCAACTTGTGTAGGCTTTAAAAAGGAAAGGCGTCCT
* * *
46802 ACTCTTTGAGGACTGGAAGGTGCCACCAACTTGTGTGGGCTTCAAAAGGAAAAG-G
66 GCTCTTTGAGGACTAGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGTG
* * *
46857 CATCCTGCTCTTTGAGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAAGAAAAGGTGT
1 --TCCTGCTCTTTGAGGACTAG-AAGGTGCCACCAACTTGTGTAGGCTTTAAAAAGGAAAGGCGT
* * * *
46921 CATGCTCTTTGAGGACT-GAAAGGTGCCACCAACTTTTGTGGGCTTTAAAAAGAAAAGGCG
63 CCTGCTCTTTGAGGACTAG-AAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAA-GTG
* * * *
46981 TCCTGCTCTTTGAGGACTGGAAAGTGCCACCCACTTGTGTAGG-TTT-AAAAGGAAAAGGCATCC
1 TCCTGCTCTTTGAGGACTAGAAGGTGCCACCAACTTGTGTAGGCTTTAAAAAGG-AAAGGCGTCC
* *
47044 TGCTCTTTGAGGACTAGAAAGTGCCACCAACCTGTGTGGGCTTTGAAAA-GAAAA-TG
65 TGCTCTTTGAGGACTAGAAGGTGCCACCAACTTGTGTGGGCTTT-AAAAGGAAAAGTG
*
47100 TCCTGCTCTTTAAGGACT
1 TCCTGCTCTTTGAGGACT
47118 GAAAAGATAA
Statistics
Matches: 333, Mismatches: 33, Indels: 34
0.83 0.08 0.09
Matches are distributed among these distances:
118 1 0.00
119 23 0.07
120 103 0.31
121 64 0.19
122 95 0.29
123 2 0.01
124 1 0.00
127 44 0.13
ACGTcount: A:0.28, C:0.19, G:0.27, T:0.26
Consensus pattern (121 bp):
TCCTGCTCTTTGAGGACTAGAAGGTGCCACCAACTTGTGTAGGCTTTAAAAAGGAAAGGCGTCCT
GCTCTTTGAGGACTAGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGTG
Found at i:46976 original size:122 final size:121
Alignment explanation
Indices: 46612--47121 Score: 572
Period size: 122 Copynumber: 4.2 Consensus size: 121
46602 ATTAAACGCA
* * * * * *
46612 TCCTACTCTTTGAGAACTAAAAGGTGCCACCAACTTGTGTAGGCTTTAAGAGGAAAAAGGAAAGT
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTAGGCTTTAA-A--AAGAA--AAGGC
* * ** *
46677 GTCCTGTTCTTTG-GGAACT-AGAAGGTGCCACCAACTTATGTGGGCTTTGCAAGGAGAAAGTG-
61 GTCCTGCTCTTTGAGG-ACTGA-AAGGTGCCACCAACTTGTGTGGGCTTTAAAAAGA-AAAG-GC
* *
46739 TCCTGCTCTTTGAGGACT-AGAAGGTGCCACCAACTTGTGTAGGCTTT-GAAAGGAAA-GCGTCC
1 TCCTGCTCTTTGAGGACTGA-AAGGTGCCACCAACTTGTGTAGGCTTTAAAAAGAAAAGGCGTCC
* * * *
46801 TACTCTTTGAGGACTGGAAGGTGCCACCAACTTGTGTGGGCTTCAAAAGGAAAAGGC
65 TGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAAGAAAAGGC
* * *
46858 ATCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAAGAAAAGGTGTCA
1 -TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTAGGCTTTAAAAAGAAAAGGCGTCC
*
46923 TGCTCTTTGAGGACTGAAAGGTGCCACCAACTTTTGTGGGCTTTAAAAAGAAAAGGC
65 TGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAAGAAAAGGC
* * *
46980 GTCCTGCTCTTTGAGGACTGGAAA-GTGCCACCCACTTGTGTAGG-TTTAAAAGGAAAAGGCATC
1 -TCCTGCTCTTTGAGGACT-GAAAGGTGCCACCAACTTGTGTAGGCTTTAAAAAGAAAAGGCGTC
* * *
47043 CTGCTCTTTGAGGACTAGAAA-GTGCCACCAACCTGTGTGGGCTTTGAAAAGAAAATG-
64 CTGCTCTTTGAGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAAGAAAAGGC
*
47100 TCCTGCTCTTTAAGGACTGAAA
1 TCCTGCTCTTTGAGGACTGAAA
47122 AGATAAAAGG
Statistics
Matches: 338, Mismatches: 35, Indels: 29
0.84 0.09 0.07
Matches are distributed among these distances:
118 5 0.01
119 21 0.06
120 89 0.26
121 75 0.22
122 96 0.28
123 7 0.02
125 1 0.00
126 1 0.00
127 43 0.13
ACGTcount: A:0.28, C:0.19, G:0.27, T:0.26
Consensus pattern (121 bp):
TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTAGGCTTTAAAAAGAAAAGGCGTCCT
GCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAAGAAAAGGC
Found at i:48104 original size:9 final size:9
Alignment explanation
Indices: 48078--48115 Score: 58
Period size: 9 Copynumber: 4.2 Consensus size: 9
48068 CTTAGGCAGG
48078 TTCTTTTTT
1 TTCTTTTTT
* *
48087 TCCTCTTTT
1 TTCTTTTTT
48096 TTCTTTTTT
1 TTCTTTTTT
48105 TTCTTTTTT
1 TTCTTTTTT
48114 TT
1 TT
48116 TGAGTTGTTT
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
9 25 1.00
ACGTcount: A:0.00, C:0.16, G:0.00, T:0.84
Consensus pattern (9 bp):
TTCTTTTTT
Found at i:48114 original size:12 final size:12
Alignment explanation
Indices: 48092--48150 Score: 64
Period size: 12 Copynumber: 4.7 Consensus size: 12
48082 TTTTTTCCTC
*
48092 TTTTTTCTTTTTT
1 TTTTTT-TTTTTG
48105 TTCTTTTTTTTTG
1 TT-TTTTTTTTTG
* *
48118 AGTTGTTTTTTTG
1 -TTTTTTTTTTTG
48131 TTTTTTTTTTTG
1 TTTTTTTTTTTG
48143 TTTTTTTT
1 TTTTTTTT
48151 GTTTTTATTG
Statistics
Matches: 39, Mismatches: 5, Indels: 5
0.80 0.10 0.10
Matches are distributed among these distances:
12 18 0.46
13 16 0.41
14 5 0.13
ACGTcount: A:0.02, C:0.03, G:0.08, T:0.86
Consensus pattern (12 bp):
TTTTTTTTTTTG
Found at i:48134 original size:23 final size:21
Alignment explanation
Indices: 48092--48172 Score: 83
Period size: 21 Copynumber: 3.8 Consensus size: 21
48082 TTTTTTCCTC
* *
48092 TTTTTTCTTTTTTTTCTTTTT
1 TTTTTTGTTTTTTTTGTTTTT
48113 TTTTGAGTTG-TTTTTTTGTTTTT
1 TTTT---TTGTTTTTTTTGTTTTT
48136 TTTTTTGTTTTTTTTGTTTTT
1 TTTTTTGTTTTTTTTGTTTTT
* **
48157 ATTGATGTTTTTTTTG
1 TTTTTTGTTTTTTTTG
48173 AAAAAAAGGA
Statistics
Matches: 51, Mismatches: 5, Indels: 8
0.80 0.08 0.12
Matches are distributed among these distances:
20 3 0.06
21 30 0.59
23 16 0.31
24 2 0.04
ACGTcount: A:0.04, C:0.02, G:0.11, T:0.83
Consensus pattern (21 bp):
TTTTTTGTTTTTTTTGTTTTT
Found at i:60438 original size:13 final size:13
Alignment explanation
Indices: 60420--60444 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
60410 TTCAACGATT
60420 TGTATCGATACAA
1 TGTATCGATACAA
60433 TGTATCGATACA
1 TGTATCGATACA
60445 TAAGTTTTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:60513 original size:13 final size:13
Alignment explanation
Indices: 60495--60520 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
60485 GCCAAGAAAA
60495 TGTATCGATACAT
1 TGTATCGATACAT
60508 TGTATCGATACAT
1 TGTATCGATACAT
60521 CACCCAAATG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:60592 original size:52 final size:52
Alignment explanation
Indices: 60523--60677 Score: 231
Period size: 52 Copynumber: 3.0 Consensus size: 52
60513 CGATACATCA
* *** *
60523 CCCAAATGTATCGATACACTGAT-CTTTGTATCGATACATGCAGGAAAATTTG
1 CCCAGATGTATCGATACACT-ATGAAATGTATCGATACATGCAGGCAAATTTG
* *
60575 CCCAGATGTATCGATACACTATGAAATGTATCGATATATACAGGCAAATTTG
1 CCCAGATGTATCGATACACTATGAAATGTATCGATACATGCAGGCAAATTTG
60627 CCCAGATGTATCGATACACTATGAAATGTATCGATACATGCAGGCAAATTT
1 CCCAGATGTATCGATACACTATGAAATGTATCGATACATGCAGGCAAATTT
60678 TCATATTTCG
Statistics
Matches: 93, Mismatches: 9, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
51 2 0.02
52 91 0.98
ACGTcount: A:0.35, C:0.19, G:0.17, T:0.29
Consensus pattern (52 bp):
CCCAGATGTATCGATACACTATGAAATGTATCGATACATGCAGGCAAATTTG
Found at i:62843 original size:27 final size:27
Alignment explanation
Indices: 62813--62876 Score: 112
Period size: 27 Copynumber: 2.4 Consensus size: 27
62803 TTTATTCATC
62813 GGGGACACTGC-AATCCCATTCCTCCGA
1 GGGGACACT-CTAATCCCATTCCTCCGA
62840 GGGGACACTCTAATCCCATTCCTCCGA
1 GGGGACACTCTAATCCCATTCCTCCGA
62867 GGGGACACTC
1 GGGGACACTC
62877 CAACCCCGTT
Statistics
Matches: 36, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
26 1 0.03
27 35 0.97
ACGTcount: A:0.22, C:0.36, G:0.23, T:0.19
Consensus pattern (27 bp):
GGGGACACTCTAATCCCATTCCTCCGA
Found at i:68299 original size:10 final size:10
Alignment explanation
Indices: 68255--68323 Score: 75
Period size: 10 Copynumber: 6.5 Consensus size: 10
68245 CTTCATACCC
68255 AAAAAAAACA
1 AAAAAAAACA
68265 AAAATAAAACA
1 AAAA-AAAACA
* *
68276 GAATAAAACA
1 AAAAAAAACA
68286 AAAAAAAACA
1 AAAAAAAACA
*
68296 AAAAAACCAAGA
1 AAAAAA--AACA
68308 AAAAAATAACA
1 AAAAAA-AACA
68319 AAAAA
1 AAAAA
68324 TAGAAAGGGG
Statistics
Matches: 49, Mismatches: 7, Indels: 5
0.80 0.11 0.08
Matches are distributed among these distances:
10 24 0.49
11 16 0.33
12 9 0.18
ACGTcount: A:0.83, C:0.10, G:0.03, T:0.04
Consensus pattern (10 bp):
AAAAAAAACA
Found at i:69573 original size:28 final size:27
Alignment explanation
Indices: 69530--70102 Score: 698
Period size: 28 Copynumber: 20.1 Consensus size: 27
69520 CGTTCATATC
69530 TTCAAAGCCCACAAGTCAGTGGCACACT
1 TTCAAAGCCCACAAGTCAGTGGCAC-CT
*
69558 TTTAAAGCCCACAAGTCAGTGGCATCCT
1 TTCAAAGCCCACAAGTCAGTGGCA-CCT
*
69586 TTCAAAGCCCACAAGTCAATGGCACCAT
1 TTCAAAGCCCACAAGTCAGTGGCACC-T
*
69614 TTCAAAGCCCACAAGTTAGTGGCATCCT
1 TTCAAAGCCCACAAGTCAGTGGCA-CCT
* *
69642 TTCAAAGCCTATAAGTCAGTGGCATCCT
1 TTCAAAGCCCACAAGTCAGTGGCA-CCT
** * *
69670 TTCAAAGCCCATGAGTTAGTGGCAACTTTT
1 TTCAAAGCCCACAAGTCAGTGGC-AC--CT
*
69700 TTAAAAGCCCACAAGTCAGTGGCATCCT
1 TTCAAAGCCCACAAGTCAGTGGCA-CCT
*
69728 TTCAAAGCCCACAAGTCAGTAGCACCT
1 TTCAAAGCCCACAAGTCAGTGGCACCT
69755 TTCAAAGCCCACAAGTCAGTGGCACCTT
1 TTCAAAGCCCACAAGTCAGTGGCACC-T
69783 TTCAAAGCCCACAAGTCAGTGGCACCCT
1 TTCAAAGCCCACAAGTCAGTGGCA-CCT
69811 TTCAAAGCCCACAAGTCAGTGGCACTCTT
1 TTCAAAGCCCACAAGTCAGTGGCAC-C-T
69840 TTCAAAGCCCACAAGTCAGTGGCACTCTT
1 TTCAAAGCCCACAAGTCAGTGGCAC-C-T
*
69869 TTCAAAGCCCATAAGTCAGTGGCACCCT
1 TTCAAAGCCCACAAGTCAGTGGCA-CCT
69897 TTCAAAGCCCACAAGTCAGTGGCACTCTT
1 TTCAAAGCCCACAAGTCAGTGGCAC-C-T
*
69926 TTCAAAGCCCACAAGTTAGTGGCAGCCT
1 TTCAAAGCCCACAAGTCAGTGGCA-CCT
69954 TTCAAAGCCCACAAGTCAGTGGCAGCCT
1 TTCAAAGCCCACAAGTCAGTGGCA-CCT
*
69982 TTCAAAGCCCACAAGTCAGTGACACCCT
1 TTCAAAGCCCACAAGTCAGTGGCA-CCT
* *
70010 TTCAAAGCCCACAAGCCAGTGGTAACTCTT
1 TTCAAAGCCCACAAGTCAGTGG-CAC-C-T
70040 TTCAAAGCCCACACGAGTC-GATGGCAACTCTT
1 TTCAAAGCCCACA--AGTCAG-TGGC-AC-C-T
*
70072 TTCAAAGCCTACACAAGTTAGTGGCACCT
1 TTCAAAGCC--CACAAGTCAGTGGCACCT
70101 TT
1 TT
70103 TTTAAATAAA
Statistics
Matches: 488, Mismatches: 32, Indels: 49
0.86 0.06 0.09
Matches are distributed among these distances:
27 32 0.07
28 291 0.60
29 91 0.19
30 38 0.08
31 3 0.01
32 28 0.06
33 1 0.00
34 4 0.01
ACGTcount: A:0.29, C:0.30, G:0.18, T:0.23
Consensus pattern (27 bp):
TTCAAAGCCCACAAGTCAGTGGCACCT
Found at i:69742 original size:114 final size:111
Alignment explanation
Indices: 69530--70102 Score: 740
Period size: 114 Copynumber: 5.0 Consensus size: 111
69520 CGTTCATATC
* *
69530 TTCAAAGCCCACAAGTCAGTGGCACACTTTTAAAGCCCACAAGTCAGTGGCA-TCCTTTCAAAGC
1 TTCAAAGCCCACAAGTCAGTGGCAC-CTTTCAAAGCCCACAAGTCAGTGGCACTCTTTTCAAAGC
* *
69594 CCACAAGTCAATGGCA-CCATTTCAAAGCCCACAAGTTAGTGGCATCCT
65 CCACAAGTCAGTGGCATCC-TTTCAAAGCCCACAAGTCAGTGGCA-CCT
* * ** * * *
69642 TTCAAAGCCTATAAGTCAGTGGCATCCTTTCAAAGCCCATGAGTTAGTGGCAACTTTTTTAAAAG
1 TTCAAAGCCCACAAGTCAGTGGCA-CCTTTCAAAGCCCACAAGTCAGTGGC-ACTCTTTTCAAAG
*
69707 CCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAGTAGCACCT
64 CCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCACCT
*
69755 TTCAAAGCCCACAAGTCAGTGGCACCTTTTCAAAGCCCACAAGTCAGTGGCAC-CCTTTCAAAGC
1 TTCAAAGCCCACAAGTCAGTGGCACC-TTTCAAAGCCCACAAGTCAGTGGCACTCTTTTCAAAGC
*
69819 CCACAAGTCAGTGGCACTCTTTTCAAAGCCCACAAGTCAGTGGCACTCTT
65 CCACAAGTCAGTGGCA-TCCTTTCAAAGCCCACAAGTCAGTGGCAC-C-T
*
69869 TTCAAAGCCCATAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTCAGTGGCACTCTTTTCAAAGC
1 TTCAAAGCCCACAAGTCAGTGGCA-CCTTTCAAAGCCCACAAGTCAGTGGCACTCTTTTCAAAGC
* *
69934 CCACAAGTTAGTGGCAGCCTTTCAAAGCCCACAAGTCAGTGGCAGCCT
65 CCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCA-CCT
* * *
69982 TTCAAAGCCCACAAGTCAGTGACACCCTTTCAAAGCCCACAAGCCAGTGGTAACTCTTTTCAAAG
1 TTCAAAGCCCACAAGTCAGTGGCA-CCTTTCAAAGCCCACAAGTCAGTGG-CACTCTTTTCAAAG
* *
70047 CCCACACGAGTC-GATGGCAACTCTTTTCAAAGCCTACACAAGTTAGTGGCACCT
64 CCCACA--AGTCAG-TGGC-A-TCCTTTCAAAGCC--CACAAGTCAGTGGCACCT
70101 TT
1 TT
70103 TTTAAATAAA
Statistics
Matches: 407, Mismatches: 35, Indels: 31
0.86 0.07 0.07
Matches are distributed among these distances:
111 24 0.06
112 74 0.18
113 97 0.24
114 143 0.35
115 31 0.08
116 7 0.02
117 1 0.00
118 11 0.03
119 5 0.01
120 14 0.03
ACGTcount: A:0.29, C:0.30, G:0.18, T:0.23
Consensus pattern (111 bp):
TTCAAAGCCCACAAGTCAGTGGCACCTTTCAAAGCCCACAAGTCAGTGGCACTCTTTTCAAAGCC
CACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCACCT
Found at i:70127 original size:38 final size:39
Alignment explanation
Indices: 70075--70148 Score: 96
Period size: 38 Copynumber: 1.9 Consensus size: 39
70065 AACTCTTTTC
* * *
70075 AAAGCCTACACAAGTTAGTGGC-ACCTTTTTTAAATAAA
1 AAAGCCCACACAAGTCAGTGGCAACCTTTTTCAAATAAA
* *
70113 AAAGCCCACGCAAGTCGGTGGCAACCTTTTTCAAAT
1 AAAGCCCACACAAGTCAGTGGCAACCTTTTTCAAAT
70149 CACCTCTATT
Statistics
Matches: 30, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
38 18 0.60
39 12 0.40
ACGTcount: A:0.35, C:0.23, G:0.16, T:0.26
Consensus pattern (39 bp):
AAAGCCCACACAAGTCAGTGGCAACCTTTTTCAAATAAA
Found at i:71010 original size:20 final size:20
Alignment explanation
Indices: 70981--71057 Score: 82
Period size: 20 Copynumber: 3.9 Consensus size: 20
70971 AAATACCGAG
70981 ATGTATCGATACATTTTTCA
1 ATGTATCGATACATTTTTCA
* * * *
71001 ATGAATCGATACATGTATGA
1 ATGTATCGATACATTTTTCA
* **
71021 ATGTATCAATACATTCCTCA
1 ATGTATCGATACATTTTTCA
*
71041 ATGTATCGATATATTTT
1 ATGTATCGATACATTTT
71058 GTCTTTTTAC
Statistics
Matches: 43, Mismatches: 14, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
20 43 1.00
ACGTcount: A:0.34, C:0.14, G:0.12, T:0.40
Consensus pattern (20 bp):
ATGTATCGATACATTTTTCA
Found at i:76314 original size:20 final size:20
Alignment explanation
Indices: 76289--76341 Score: 97
Period size: 20 Copynumber: 2.6 Consensus size: 20
76279 AAACCCTTGT
*
76289 ATGTATCAATACACTTTCAG
1 ATGTATCGATACACTTTCAG
76309 ATGTATCGATACACTTTCAG
1 ATGTATCGATACACTTTCAG
76329 ATGTATCGATACA
1 ATGTATCGATACA
76342 TTATGCTTTG
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 32 1.00
ACGTcount: A:0.34, C:0.19, G:0.13, T:0.34
Consensus pattern (20 bp):
ATGTATCGATACACTTTCAG
Found at i:76470 original size:13 final size:13
Alignment explanation
Indices: 76452--76476 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
76442 CATGGCATGT
76452 TGTATCGATACAA
1 TGTATCGATACAA
76465 TGTATCGATACA
1 TGTATCGATACA
76477 TGAAGAATTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:79451 original size:51 final size:51
Alignment explanation
Indices: 79291--79461 Score: 198
Period size: 51 Copynumber: 3.3 Consensus size: 51
79281 GAAATAACGA
* * *
79291 GGTTGGAGTATCCTCGATTGTGAAAAATTGGTATTTTTGGAAATAAAATCGG
1 GGTTGGAGTATCCCCGATTATGAAAAATTGGTA-TTTTGAAAATAAAATCGG
** * * * * *
79343 AATTGGAGTATCCCCGATTAAAAGAGAAATTGGTGTTGTGAAAATAAAACCGG
1 GGTTGGAGTATCCCCGATT--ATGAAAAATTGGTATTTTGAAAATAAAATCGG
* * *
79396 GGTTGGAGTATCCCCGATTATGAAAAATCGATATTTTGAAAATAAAGTCGG
1 GGTTGGAGTATCCCCGATTATGAAAAATTGGTATTTTGAAAATAAAATCGG
79447 GGTTGGAGTATCCCC
1 GGTTGGAGTATCCCC
79462 TCAGAAATAA
Statistics
Matches: 97, Mismatches: 20, Indels: 5
0.80 0.16 0.04
Matches are distributed among these distances:
51 39 0.40
52 16 0.16
53 32 0.33
54 10 0.10
ACGTcount: A:0.33, C:0.12, G:0.26, T:0.29
Consensus pattern (51 bp):
GGTTGGAGTATCCCCGATTATGAAAAATTGGTATTTTGAAAATAAAATCGG
Found at i:79507 original size:27 final size:28
Alignment explanation
Indices: 79444--79519 Score: 102
Period size: 27 Copynumber: 2.8 Consensus size: 28
79434 AAAATAAAGT
*
79444 CGGGGTTGGAGTATCCCCTCA-GAAATAA
1 CGGGGTTGGAGTATCCCC-GATGAAATAA
*
79472 CGGGGTTGGAGTATCCCCGATG-ATTAA
1 CGGGGTTGGAGTATCCCCGATGAAATAA
*
79499 CGGGGTTGGAGTGTCCCCGAT
1 CGGGGTTGGAGTATCCCCGAT
79520 TGTGAAGAAA
Statistics
Matches: 44, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
27 25 0.57
28 19 0.43
ACGTcount: A:0.21, C:0.21, G:0.34, T:0.24
Consensus pattern (28 bp):
CGGGGTTGGAGTATCCCCGATGAAATAA
Found at i:82059 original size:13 final size:13
Alignment explanation
Indices: 82041--82066 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
82031 CATTTTTCTG
82041 TGTATCGATACAT
1 TGTATCGATACAT
82054 TGTATCGATACAT
1 TGTATCGATACAT
82067 GGATCTTTGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:82065 original size:33 final size:33
Alignment explanation
Indices: 82023--82087 Score: 94
Period size: 33 Copynumber: 2.0 Consensus size: 33
82013 CAAGGAATGA
***
82023 TATCGATACATTTTTCTGTGTATCGATACATTG
1 TATCGATACATGGATCTGTGTATCGATACATTG
*
82056 TATCGATACATGGATCTTTGTATCGATACATT
1 TATCGATACATGGATCTGTGTATCGATACATT
82088 TGGAAATTTT
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 28 1.00
ACGTcount: A:0.26, C:0.15, G:0.15, T:0.43
Consensus pattern (33 bp):
TATCGATACATGGATCTGTGTATCGATACATTG
Done.