Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold172
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 1975206
ACGTcount: A:0.26, C:0.15, G:0.15, T:0.26
Warning! 344189 characters in sequence are not A, C, G, or T
File 10 of 11
Found at i:1844532 original size:56 final size:56
Alignment explanation
Indices: 1844301--1845057 Score: 589
Period size: 56 Copynumber: 13.2 Consensus size: 56
1844291 CGACCCTTTT
* * *** *
1844301 CAAAGCCCACAA-TCAGTGGCACCTCTTTTAAAACCCGTGAGTCAATGGCATCCTTC
1 CAAAGCCCACAAGTCAGTGGCACC-CTTTCAAAGCCCACAAGTCAGTGGCATCCTTC
* * *
1844357 CAAAGCCCA-AGAGTCAGTGGCATCCTTTCAAAAGCTCACGAGTCAGTGGCATCCTTTC
1 CAAAGCCCACA-AGTCAGTGGCACCCTTTC-AAAGCCCACAAGTCAGTGGCATCC-TTC
* * *
1844415 AAAATCCCACCAA-TCAGTGGCACCCTTTCAAAAGCCCACAAGTCAGTGGCA-CCCTC
1 CAAAGCCCA-CAAGTCAGTGGCACCCTTTC-AAAGCCCACAAGTCAGTGGCATCCTTC
* **
1844471 TCAAAGCCCACAAGTTAGTGGCACCCTTTCAAAGCCCATGAGTCAGTGGCATCCTTC
1 -CAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTCAGTGGCATCCTTC
** * * *
1844528 CAAAGCCCATGAGTTAGTTGCATCCTTTCAAAAGCCCACCAA-TCAGTGGCATCCTTTC
1 CAAAGCCCACAAGTCAGTGGCACCCTTTC-AAAGCCCA-CAAGTCAGTGGCATCC-TTC
* * * * * *
1844586 AAAAGCCCACCAGTCAATGGCATCCTTTCAAAGCCCATAAGTCAGTGGCATCCTTT
1 CAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTCAGTGGCATCCTTC
* * * * *
1844642 CAAAGCCCATAAGTCAGTGGCATCCTTTCAAAGCCCATAAGTCAGTGGCACCCTTT
1 CAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTCAGTGGCATCCTTC
* * * ** * *
1844698 CAAAGCCCACGAGTCAGTGGCA-CTTTCTCGAAGCCCATGAGTTAGTGGCACCCTTC
1 CAAAGCCCACAAGTCAGTGGCACCCTT-TCAAAGCCCACAAGTCAGTGGCATCCTTC
* ** * * * * *
1844754 TAAAGCCCAGGAGTCAATGGCACCCTTT-AAATACCCACAAGTCAATGGCACCCTTT
1 CAAAGCCCACAAGTCAGTGGCACCCTTTCAAA-GCCCACAAGTCAGTGGCATCCTTC
* ** *
1844810 CAAAGCCCACACAAGTCAGTGGCAACCTCTCTCAAAGCCCACAAGTTGGTGGCAACC--C
1 CAAAG-CC-CACAAGTCAGTGGC-ACC-CTTTCAAAGCCCACAAGTCAGTGGCATCCTTC
** * * *
1844868 CTTAAAGCCTACACAAGTTGGTGGCAACCTCTCTCAAAGCCCACAAGTCAGTGGCACCCTTT
1 C--AAAGCC--CACAAGTCAGTGGC-ACC-CTTTCAAAGCCCACAAGTCAGTGGCATCCTTC
* * * * * * * *
1844930 CAAAGCCCATAAGTTAGTAGCACCCTTTCGAAGCCCATAAATTAGTGGCATCCTTT
1 CAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTCAGTGGCATCCTTC
* ** *
1844986 TAAAGCCCACAAGTCAGTGGCAACCC-TTCTAAAGCCCACACAAGTTGGTGGCAACCTTCTC
1 CAAAGCCCACAAGTCAGTGGC-ACCCTTTC-AAAG-CC-CACAAGTCAGTGGCATCC-T-TC
1845047 CAAAGCCCACA
1 CAAAGCCCACA
1845058 CAAGTTGGTG
Statistics
Matches: 576, Mismatches: 93, Indels: 59
0.79 0.13 0.08
Matches are distributed among these distances:
55 6 0.01
56 251 0.44
57 112 0.19
58 97 0.17
59 20 0.03
60 75 0.13
61 14 0.02
62 1 0.00
ACGTcount: A:0.29, C:0.32, G:0.18, T:0.21
Consensus pattern (56 bp):
CAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTCAGTGGCATCCTTC
Found at i:1844875 original size:60 final size:60
Alignment explanation
Indices: 1844811--1845106 Score: 252
Period size: 60 Copynumber: 5.0 Consensus size: 60
1844801 GCACCCTTTC
*
1844811 AAAGCCCACACAAGTCAGTGGCAACCTCTCTCAAAGCCCACAAGTTGGTGGCAACCCCTT
1 AAAGCCCACACAAGTTAGTGGCAACCTCTCTCAAAGCCCACAAGTTGGTGGCAACCCCTT
* * ** *
1844871 AAAGCCTACACAAGTTGGTGGCAACCTCTCTCAAAGCCCACAAGTCAGTGGC-ACCCTTT
1 AAAGCCCACACAAGTTAGTGGCAACCTCTCTCAAAGCCCACAAGTTGGTGGCAACCCCTT
* * * * * * * * **
1844930 CAAAG-CC-CATAAGTTAGTAGC-ACC-CTTTCGAAGCCCATAAATTAGTGGCATCCTTTT
1 -AAAGCCCACACAAGTTAGTGGCAACCTCTCTCAAAGCCCACAAGTTGGTGGCAACCCCTT
* * *
1844987 AAAG-CC-CACAAGTCAGTGGCAACC-CT-TCTAAAGCCCACACAAGTTGGTGGCAACCTTCTCC
1 AAAGCCCACACAAGTTAGTGGCAACCTCTCTC-AAAG-CC-CACAAGTTGGTGGCAACC-CCT-T
* *
1845048 AAAGCCCACACAAGTTGGTGGCAACCT-TCACCAAAGCCCACACAAGTTGGTGGCAACCC
1 AAAGCCCACACAAGTTAGTGGCAACCTCTC-TCAAAG-CC-CACAAGTTGGTGGCAACCC
1845107 TTCTAAACCC
Statistics
Matches: 192, Mismatches: 31, Indels: 23
0.78 0.13 0.09
Matches are distributed among these distances:
56 39 0.20
57 16 0.08
58 13 0.07
59 21 0.11
60 53 0.28
61 4 0.02
62 2 0.01
63 17 0.09
64 26 0.14
65 1 0.01
ACGTcount: A:0.30, C:0.32, G:0.18, T:0.19
Consensus pattern (60 bp):
AAAGCCCACACAAGTTAGTGGCAACCTCTCTCAAAGCCCACAAGTTGGTGGCAACCCCTT
Found at i:1849629 original size:13 final size:13
Alignment explanation
Indices: 1849611--1849637 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
1849601 TACAATGAAC
1849611 ATGTATTGATACA
1 ATGTATTGATACA
1849624 ATGTATTGATACA
1 ATGTATTGATACA
1849637 A
1 A
1849638 AGCATAATAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.41, C:0.07, G:0.15, T:0.37
Consensus pattern (13 bp):
ATGTATTGATACA
Found at i:1849954 original size:26 final size:26
Alignment explanation
Indices: 1849918--1849967 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
1849908 TTTGTACTTT
1849918 GTTATATCAAAACCAAGAACCTAATA
1 GTTATATCAAAACCAAGAACCTAATA
*
1849944 GTTATATCAAAACCAAGATCCTAA
1 GTTATATCAAAACCAAGAACCTAA
1849968 CAATCTCTCC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.48, C:0.20, G:0.08, T:0.24
Consensus pattern (26 bp):
GTTATATCAAAACCAAGAACCTAATA
Found at i:1858391 original size:20 final size:20
Alignment explanation
Indices: 1858366--1858437 Score: 83
Period size: 20 Copynumber: 3.6 Consensus size: 20
1858356 CGTTAGGACA
*
1858366 ATGTATTGATACTTTTCACT
1 ATGTATCGATACTTTTCACT
* * *
1858386 ATGTATCGATACAATGT-ACC
1 ATGTATCGATAC-TTTTCACT
1858406 ATGTATCGATACTTTTCACT
1 ATGTATCGATACTTTTCACT
*
1858426 ATGCATCGATAC
1 ATGTATCGATAC
1858438 AATGTACCAT
Statistics
Matches: 42, Mismatches: 8, Indels: 4
0.78 0.15 0.07
Matches are distributed among these distances:
19 2 0.05
20 38 0.90
21 2 0.05
ACGTcount: A:0.29, C:0.19, G:0.12, T:0.39
Consensus pattern (20 bp):
ATGTATCGATACTTTTCACT
Found at i:1858417 original size:40 final size:40
Alignment explanation
Indices: 1858366--1858457 Score: 166
Period size: 40 Copynumber: 2.3 Consensus size: 40
1858356 CGTTAGGACA
* *
1858366 ATGTATTGATACTTTTCACTATGTATCGATACAATGTACC
1 ATGTATCGATACTTTTCACTATGCATCGATACAATGTACC
1858406 ATGTATCGATACTTTTCACTATGCATCGATACAATGTACC
1 ATGTATCGATACTTTTCACTATGCATCGATACAATGTACC
1858446 ATGTATCGATAC
1 ATGTATCGATAC
1858458 AAACAGTGGT
Statistics
Matches: 50, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
40 50 1.00
ACGTcount: A:0.30, C:0.20, G:0.13, T:0.37
Consensus pattern (40 bp):
ATGTATCGATACTTTTCACTATGCATCGATACAATGTACC
Found at i:1858453 original size:20 final size:20
Alignment explanation
Indices: 1858386--1858459 Score: 96
Period size: 20 Copynumber: 3.7 Consensus size: 20
1858376 ACTTTTCACT
1858386 ATGTATCGATACAATGTACC
1 ATGTATCGATACAATGTACC
* * *
1858406 ATGTATCGATAC-TTTTCACT
1 ATGTATCGATACAATGT-ACC
*
1858426 ATGCATCGATACAATGTACC
1 ATGTATCGATACAATGTACC
1858446 ATGTATCGATACAA
1 ATGTATCGATACAA
1858460 ACAGTGGTAG
Statistics
Matches: 44, Mismatches: 8, Indels: 4
0.79 0.14 0.07
Matches are distributed among these distances:
19 2 0.05
20 40 0.91
21 2 0.05
ACGTcount: A:0.34, C:0.20, G:0.14, T:0.32
Consensus pattern (20 bp):
ATGTATCGATACAATGTACC
Found at i:1858532 original size:19 final size:20
Alignment explanation
Indices: 1858488--1858537 Score: 75
Period size: 19 Copynumber: 2.5 Consensus size: 20
1858478 CTGCTAGTTT
1858488 CATGTATCGATACAATTGAA
1 CATGTATCGATACAATTGAA
**
1858508 TGTGTATCGATACAA-TGAA
1 CATGTATCGATACAATTGAA
1858527 CATGTATCGAT
1 CATGTATCGAT
1858538 GCCATGTATC
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
19 13 0.50
20 13 0.50
ACGTcount: A:0.36, C:0.14, G:0.18, T:0.32
Consensus pattern (20 bp):
CATGTATCGATACAATTGAA
Found at i:1858560 original size:135 final size:135
Alignment explanation
Indices: 1858404--1858687 Score: 550
Period size: 135 Copynumber: 2.1 Consensus size: 135
1858394 ATACAATGTA
1858404 CCATGTATCGATACTTTTCACTATGCATCGATACAATGTACCATGTATCGATACAAACAGTGGTA
1 CCATGTATCGATACTTTTCACTATGCATCGATACAATGTACCATGTATCGATACAAACAGTGGTA
1858469 GGGTAGCTACTGCTAGTTTCATGTATCGATACAATTGAATGTGTATCGATACAATGAACATGTAT
66 GGGTAGCTACTGCTAGTTTCATGTATCGATACAATTGAATGTGTATCGATACAATGAACATGTAT
1858534 CGATG
131 CGATG
1858539 CCATGTATCGATACTTTTCACTATGCATCGATACAATGTACCATGTATCGATACAAACAGTGGTA
1 CCATGTATCGATACTTTTCACTATGCATCGATACAATGTACCATGTATCGATACAAACAGTGGTA
*
1858604 GGGTAGCTACTGCTAGTTTCATGTATCGATACAATTGAATGTGTATCGATACAATGATCATGTAT
66 GGGTAGCTACTGCTAGTTTCATGTATCGATACAATTGAATGTGTATCGATACAATGAACATGTAT
1858669 CGATG
131 CGATG
*
1858674 CAATGTATCGATAC
1 CCATGTATCGATAC
1858688 AAAGCATAAT
Statistics
Matches: 147, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
135 147 1.00
ACGTcount: A:0.31, C:0.18, G:0.19, T:0.32
Consensus pattern (135 bp):
CCATGTATCGATACTTTTCACTATGCATCGATACAATGTACCATGTATCGATACAAACAGTGGTA
GGGTAGCTACTGCTAGTTTCATGTATCGATACAATTGAATGTGTATCGATACAATGAACATGTAT
CGATG
Found at i:1858669 original size:19 final size:20
Alignment explanation
Indices: 1858622--1858678 Score: 73
Period size: 19 Copynumber: 2.9 Consensus size: 20
1858612 ACTGCTAGTT
1858622 TCATGTATCGATACAATTGAA
1 TCATGTATCGATACAA-TGAA
*
1858643 T-GTGTATCGATACAATG-A
1 TCATGTATCGATACAATGAA
*
1858661 TCATGTATCGATGCAATG
1 TCATGTATCGATACAATG
1858679 TATCGATACA
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
18 2 0.06
19 16 0.50
20 13 0.41
21 1 0.03
ACGTcount: A:0.33, C:0.14, G:0.19, T:0.33
Consensus pattern (20 bp):
TCATGTATCGATACAATGAA
Found at i:1859739 original size:152 final size:150
Alignment explanation
Indices: 1859431--1860216 Score: 802
Period size: 152 Copynumber: 5.2 Consensus size: 150
1859421 CAATTTTAGG
* * * * *
1859431 AAATTACGAAAATGCTCTTATGGATATACCTTCGACGTGAAAGTATC-CCAGTAATCCTAAAGGA
1 AAATTACTAAAATGCCCCTA-GGATATACCTTCGATGTGAAAGTATCTCC-GTAACCCTAAAGGA
* * *
1859495 CTTAAAAAGGAAAAGGGATGAACCTAT-CTAAACATACACCTTCGACATAGAACCGGACCCGGTG
64 CTTAAAAAGGAAAAGGGATGAACCTATCCTAAACATACACCTTCGACATAGAAGCAGACCCAGTG
1859559 ACAACCTAGGACTC-GATTATAGAA
129 ACAACCTAGGACTCAG-TTAT--AA
* * *
1859583 AAATTACTAAAATGCCCCTAGAAATATACCTTGGATGTGAAAATATCTCCGTAACCCTAAAGGAC
1 AAATTACTAAAATGCCCCTAG-GATATACCTTCGATGTGAAAGTATCTCCGTAACCCTAAAGGAC
* * * * * *
1859648 TTAAAAATGAAAAGAGATGAACCTATCCTAAACGTACACCTTTGGCATAGAAGCATACCCAGTGA
65 TTAAAAAGGAAAAGGGATGAACCTATCCTAAACATACACCTTCGACATAGAAGCAGACCCAGTGA
*
1859713 TAACCTAGGACTCAGTTATAA
130 CAACCTAGGACTCAGTTATAA
* * * * * * * **
1859734 GAAATTA-TGAAAATGCCTCTATGGGTAGACCATCGATGCGAAACTATCTCAGTAACCCTAAAAT
1 -AAATTACT-AAAATGCCCCTA-GGATATACCTTCGATGTGAAAGTATCTCCGTAACCCTAAAGG
* ** * *
1859798 ACTTAAAAA-GATAAAGGGGTGAACCTATCCTAAATGTACACCTTCGACATAAAAGCAGACTCAG
63 ACTTAAAAAGGA-AAAGGGATGAACCTATCCTAAACATACACCTTCGACATAGAAGCAGACCCAG
* *
1859862 TGACAACCTAAGACTCGATTTATAA
127 TGACAACCTAGGACTC-AGTTATAA
* * * *
1859887 AAATTACTAAAATGCCCTTAAAGTTATACCTTCGACGTGAAAGTATC-CCGGTAACCCTAAAGGA
1 AAATTACTAAAATGCCCCT-AGGATATACCTTCGATGTGAAAGTATCTCC-GTAACCCTAAAGGA
* * *
1859951 CTTAAAAAGGAAAAAGGATGAACCTAT-CTAAACATACACCTTCAACATAG-ATCAGACCCAGTG
64 CTTAAAAAGGAAAAGGGATGAACCTATCCTAAACATACACCTTCGACATAGAAGCAGACCCAGTG
*
1860014 ACAACCTAGGACTC-GATTCTAAA
129 ACAACCTAGGACTCAG-TTAT-AA
* * * * * * *
1860037 AAATTA-TAAAAATACCTCTAGGCTATACCTTCAATGTTAAAGTATCTCGGTAACCCTAAAAGAC
1 AAATTACT-AAAATGCCCCTAGGATATACCTTCGATGTGAAAGTATCTCCGTAACCCTAAAGGAC
* * * ***
1860101 TTAAAAATGAAAAGGGATGAACCTATCCTAAACATACACCTTCTG-TATAGAAGCATACTTGGTG
65 TTAAAAAGGAAAAGGGATGAACCTATCCTAAACATACACCTTC-GACATAGAAGCAGACCCAGTG
*
1860165 ATAACCTAGGACTCAGTTATCAA
129 ACAACCTAGGACTCAGTTAT-AA
* *
1860188 AAATTACAAAAATGCCCCTATGGGTATAC
1 AAATTACTAAAATGCCCCTA-GGATATAC
1860217 TCGATTTTTA
Statistics
Matches: 522, Mismatches: 89, Indels: 46
0.79 0.14 0.07
Matches are distributed among these distances:
149 64 0.12
150 61 0.12
151 68 0.13
152 267 0.51
153 61 0.12
154 1 0.00
ACGTcount: A:0.40, C:0.21, G:0.16, T:0.24
Consensus pattern (150 bp):
AAATTACTAAAATGCCCCTAGGATATACCTTCGATGTGAAAGTATCTCCGTAACCCTAAAGGACT
TAAAAAGGAAAAGGGATGAACCTATCCTAAACATACACCTTCGACATAGAAGCAGACCCAGTGAC
AACCTAGGACTCAGTTATAA
Found at i:1859954 original size:304 final size:302
Alignment explanation
Indices: 1859400--1860207 Score: 961
Period size: 304 Copynumber: 2.7 Consensus size: 302
1859390 ATAAAAATAA
* * * * * *
1859400 ACCCGGTGATAACCTAAGACTCAATTTTAGGAAATTACGAAAATG-CTCTTATGGATATACCTTC
1 ACCCAGTGATAACCTAGGACTCAGTTATAAGAAATTATGAAAATGCCTC-TATGGATATACCTTC
* * * *
1859464 GACGTGAAAGTATCCCAGTAATCCTAAAGGACTTAAAAAGGAAAAGGGATGAACCTAT-CTAAAC
65 GATGTGAAAGTATCTCAGTAACCCTAAAAGACTTAAAAAGGAAAAGGGATGAACCTATCCTAAAC
* * * *
1859528 ATACACCTTCGACATAGAACCGGACCCGGTGACAACCTAGGACTCGATTATAGAAAAATTACTAA
130 ATACACCTTCGACATAGAAGCAGACTCGGTGACAACCTAGGACTCGATT-TATAAAAATTACTAA
* * *
1859593 AATGCCCCTAGAAATATACCTTGGATGTGAAAATATCTCCGTAACCCTAAAGGACTTAAAAATG-
194 AATGCCCCTAGAAATATACCTTCGACGTGAAAATATCTCCGTAACCCTAAAGGACTTAAAAAGGA
* *** *
1859657 AAAAGAGATGAACCTATCCTAAACGTACACCTTTGGCATAGAAGCAT
259 AAAAG-GATGAACCTAT-CTAAACATACACCTTCAACATAG-AGCAG
* * *
1859704 ACCCAGTGATAACCTAGGACTCAGTTATAAGAAATTATGAAAATGCCTCTATGGGTAGACCATCG
1 ACCCAGTGATAACCTAGGACTCAGTTATAAGAAATTATGAAAATGCCTCTATGGATATACCTTCG
* * * * *
1859769 ATGCGAAACTATCTCAGTAACCCTAAAATACTTAAAAA-GATAAAGGGGTGAACCTATCCTAAAT
66 ATGTGAAAGTATCTCAGTAACCCTAAAAGACTTAAAAAGGA-AAAGGGATGAACCTATCCTAAAC
* * * *
1859833 GTACACCTTCGACATAAAAGCAGACTCAGTGACAACCTAAGACTCGATTTATAAAAATTACTAAA
130 ATACACCTTCGACATAGAAGCAGACTCGGTGACAACCTAGGACTCGATTTATAAAAATTACTAAA
* * *
1859898 ATGCCCTTA-AAGTTATACCTTCGACGTGAAAGTATC-CCGGTAACCCTAAAGGACTTAAAAAGG
195 ATGCCCCTAGAA-ATATACCTTCGACGTGAAAATATCTCC-GTAACCCTAAAGGACTTAAAAAGG
*
1859961 AAAAAGGATGAACCTATCTAAACATACACCTTCAACATAGATCAG
258 AAAAAGGATGAACCTATCTAAACATACACCTTCAACATAGAGCAG
* * * * * *
1860006 ACCCAGTGACAACCTAGGACTC-GATTCTAAAAAATTATAAAAATACCTCTA-GGCTATACCTTC
1 ACCCAGTGATAACCTAGGACTCAG-TTATAAGAAATTATGAAAATGCCTCTATGGATATACCTTC
* * * *
1860069 AATGTTAAAGTATCTCGGTAACCCTAAAAGACTTAAAAATGAAAAGGGATGAACCTATCCTAAAC
65 GATGTGAAAGTATCTCAGTAACCCTAAAAGACTTAAAAAGGAAAAGGGATGAACCTATCCTAAAC
* * * * * *
1860134 ATACACCTTCTG-TATAGAAGCATACTTGGTGATAACCTAGGACTC-AGTTATCAAAAATTACAA
130 ATACACCTTC-GACATAGAAGCAGACTCGGTGACAACCTAGGACTCGATTTAT-AAAAATTACTA
1860197 AAATGCCCCTA
193 AAATGCCCCTA
1860208 TGGGTATACT
Statistics
Matches: 429, Mismatches: 65, Indels: 23
0.83 0.13 0.04
Matches are distributed among these distances:
300 5 0.01
301 119 0.28
302 50 0.12
303 25 0.06
304 175 0.41
305 55 0.13
ACGTcount: A:0.40, C:0.21, G:0.16, T:0.24
Consensus pattern (302 bp):
ACCCAGTGATAACCTAGGACTCAGTTATAAGAAATTATGAAAATGCCTCTATGGATATACCTTCG
ATGTGAAAGTATCTCAGTAACCCTAAAAGACTTAAAAAGGAAAAGGGATGAACCTATCCTAAACA
TACACCTTCGACATAGAAGCAGACTCGGTGACAACCTAGGACTCGATTTATAAAAATTACTAAAA
TGCCCCTAGAAATATACCTTCGACGTGAAAATATCTCCGTAACCCTAAAGGACTTAAAAAGGAAA
AAGGATGAACCTATCTAAACATACACCTTCAACATAGAGCAG
Found at i:1860426 original size:151 final size:151
Alignment explanation
Indices: 1860271--1860543 Score: 397
Period size: 151 Copynumber: 1.8 Consensus size: 151
1860261 GACGTAAAAA
* * * * *
1860271 TATCTCGATAAACCTAAAGGACTTAAAAATTAAAAGGGGTGAACCTATCCTAAGCGTACACCTT-
1 TATCTCGATAAACCTAAAAGACTTAAAAATGAAAAGGGATGAACCTATCCTAAACATACACCTTC
* *
1860335 TGGCATAGAAGCATACTCGATGATAACCTAGGACTC-GATTCTAAAAAATTATAAAAATACCTCT
66 T-GCATAGAAGCATACTCGATGATAACCTAGGACTCAG-TTATAAAAAATTACAAAAATACCTCT
1860399 AGGCTATACCTTCAATGTTAAAG
129 AGGCTATACCTTCAATGTTAAAG
* *
1860422 TATCTCGGTAACCCTAAAAGACTTAAAAATGAAAAGGGATGAACCTATCCTAAACATACACCTTC
1 TATCTCGATAAACCTAAAAGACTTAAAAATGAAAAGGGATGAACCTATCCTAAACATACACCTTC
* * * *
1860487 TGTATAGAAGCATACTTGGTGATAACCTAGGACTCAGTTATCAAAAATTACAAAAAT
66 TGCATAGAAGCATACTCGATGATAACCTAGGACTCAGTTATAAAAAATTACAAAAAT
1860544 GCCCCTATGG
Statistics
Matches: 107, Mismatches: 13, Indels: 4
0.86 0.10 0.03
Matches are distributed among these distances:
151 105 0.98
152 2 0.02
ACGTcount: A:0.40, C:0.19, G:0.15, T:0.26
Consensus pattern (151 bp):
TATCTCGATAAACCTAAAAGACTTAAAAATGAAAAGGGATGAACCTATCCTAAACATACACCTTC
TGCATAGAAGCATACTCGATGATAACCTAGGACTCAGTTATAAAAAATTACAAAAATACCTCTAG
GCTATACCTTCAATGTTAAAG
Found at i:1860642 original size:343 final size:343
Alignment explanation
Indices: 1859874--1860902 Score: 1511
Period size: 343 Copynumber: 3.0 Consensus size: 343
1859864 ACAACCTAAG
* * * * * * * *
1859874 ACTCGATTTAT-AAAAATTACTAAAATGC-CCTTAAAGTTATACCTTCGACGTGAAAGTATCCCG
1 ACTCGATTTTTAAAAAATTACTAAAATACTCC-TAACG-AATACCTGCGACGTAAAAATATCTCG
* * ** * * * * ***
1859937 GTAACCCTAAAGGACTTAAAAAGGAAAAAGGATGAACCTAT-CTAAACATACACCTTCAACATAG
64 ATAAACCTAAAGGACTTAAAAATTAAAAGGGGTGAACCTATCCTAAGCGTACACCTTTGGCATAG
* * * *
1860001 -ATCAGAC-CCAGTGACAACCTAGGACTCGATTCTAAAAAATTATAAAAATACCTCTAGGCTATA
129 AAGCATACTCGA-TGATAACCTAGGACTCGATTCTAAAAAATTATAAAAATACCTCTAGGCTATA
1860064 CCTTCAATGTTAAAGTATCTCGGTAACCCTAAAAGACTTAAAAATGAAAAGGGATGAACCTATCC
193 CCTTCAATGTTAAAGTATCTCGGTAACCCTAAAAGACTTAAAAATGAAAAGGGATGAACCTATCC
1860129 TAAACATACACCTTCTGTATAGAAGCATACTTGGTGATAACCTAGGACTCAGTTATCAAAAATTA
258 TAAACATACACCTTCTGTATAGAAGCATACTTGGTGATAACCTAGGACTCAGTTATCAAAAATTA
1860194 CAAAAATGCCCCTATGGGTAT
323 CAAAAATGCCCCTATGGGTAT
1860215 ACTCGATTTTTAAAAAATTACTAAAATACTCCTAACGAATACCTGCGACGTAAAAATATCTCGAT
1 ACTCGATTTTTAAAAAATTACTAAAATACTCCTAACGAATACCTGCGACGTAAAAATATCTCGAT
1860280 AAACCTAAAGGACTTAAAAATTAAAAGGGGTGAACCTATCCTAAGCGTACACCTTTGGCATAGAA
66 AAACCTAAAGGACTTAAAAATTAAAAGGGGTGAACCTATCCTAAGCGTACACCTTTGGCATAGAA
1860345 GCATACTCGATGATAACCTAGGACTCGATTCTAAAAAATTATAAAAATACCTCTAGGCTATACCT
131 GCATACTCGATGATAACCTAGGACTCGATTCTAAAAAATTATAAAAATACCTCTAGGCTATACCT
1860410 TCAATGTTAAAGTATCTCGGTAACCCTAAAAGACTTAAAAATGAAAAGGGATGAACCTATCCTAA
196 TCAATGTTAAAGTATCTCGGTAACCCTAAAAGACTTAAAAATGAAAAGGGATGAACCTATCCTAA
1860475 ACATACACCTTCTGTATAGAAGCATACTTGGTGATAACCTAGGACTCAGTTATCAAAAATTACAA
261 ACATACACCTTCTGTATAGAAGCATACTTGGTGATAACCTAGGACTCAGTTATCAAAAATTACAA
1860540 AAATGCCCCTATGGGTAT
326 AAATGCCCCTATGGGTAT
1860558 ACTCGATTTTTAAAAAATTACTAAAATACTCCTAACGAATACCTGCGACGTAAAAATATCTCGAT
1 ACTCGATTTTTAAAAAATTACTAAAATACTCCTAACGAATACCTGCGACGTAAAAATATCTCGAT
1860623 AAACCTAAAGGACTTAAAAATTAAAAGGGGTGAACCTATCCTAAGCGTACACCTTTGGCATAGAA
66 AAACCTAAAGGACTTAAAAATTAAAAGGGGTGAACCTATCCTAAGCGTACACCTTTGGCATAGAA
* **
1860688 GCATACTCGATGATAACCTAGGACTCGATTCTAAAAAAATTACT-AAAAT-GCTCTTAGGAGATA
131 GCATACTCGATGATAACCTAGGACTCGATTCT-AAAAAATTA-TAAAAATACCTC-TAGGCTATA
* * ** * ** * * *
1860751 TCTTCGACATAAAAGTATCTCAATAATCCC-AAAGGACTTAAAAA-GATAAGGGATAAACCTATC
193 CCTTCAATGTTAAAGTATCTCGGTAA-CCCTAAAAGACTTAAAAATGAAAAGGGATGAACCTATC
* * * * * * * *
1860814 CTAAACGTACACCTTCAGCAT-GAAAGCATACCTGGTGATTACCTAGGACTCAATTCTAAAAAAT
257 CTAAACATACACCTTCTGTATAG-AAGCATACTTGGTGATAACCTAGGACTCAGTTATCAAAAAT
*
1860878 TACAAAAATGCCCTTATGGGTAT
321 TACAAAAATGCCCCTATGGGTAT
1860901 AC
1 AC
1860903 CTTCATTGTA
Statistics
Matches: 633, Mismatches: 45, Indels: 18
0.91 0.06 0.03
Matches are distributed among these distances:
341 66 0.10
342 39 0.06
343 469 0.74
344 55 0.09
345 4 0.01
ACGTcount: A:0.40, C:0.20, G:0.14, T:0.26
Consensus pattern (343 bp):
ACTCGATTTTTAAAAAATTACTAAAATACTCCTAACGAATACCTGCGACGTAAAAATATCTCGAT
AAACCTAAAGGACTTAAAAATTAAAAGGGGTGAACCTATCCTAAGCGTACACCTTTGGCATAGAA
GCATACTCGATGATAACCTAGGACTCGATTCTAAAAAATTATAAAAATACCTCTAGGCTATACCT
TCAATGTTAAAGTATCTCGGTAACCCTAAAAGACTTAAAAATGAAAAGGGATGAACCTATCCTAA
ACATACACCTTCTGTATAGAAGCATACTTGGTGATAACCTAGGACTCAGTTATCAAAAATTACAA
AAATGCCCCTATGGGTAT
Found at i:1860860 original size:151 final size:150
Alignment explanation
Indices: 1860558--1860893 Score: 390
Period size: 151 Copynumber: 2.2 Consensus size: 150
1860548 CTATGGGTAT
* * * * *
1860558 ACTCGATTTTTAAAAAATTACTAAAATACTCCTAACGAATACCTGCGACGTAAAAATATCTCGAT
1 ACTCGA-TTCTAAAAAATTACTAAAATGCT-CTTACGAATACCTGCGACATAAAAATATCTCAAT
* * * * * **
1860623 AAACCTAAAGGACTTAAAAATTAAAAGGGGTGAACCTATCCTAAGCGTACACCTTTGGCATAGAA
64 AAACCCAAAGGACTTAAAAATGAAAAGGGATAAACCTATCCTAAACGTACACCTTCAGCATAGAA
1860688 GCATACTCGATGATAACCTAGG
129 GCATACTCGATGATAACCTAGG
* * * *
1860710 ACTCGATTCTAAAAAAATTACTAAAATGCTCTTAGGAGATATCTTCGACATAAAAGTATCTCAAT
1 ACTCGATTCT-AAAAAATTACTAAAATGCTCTTACGA-ATACCTGCGACATAAAAATATCTCAAT
* *
1860775 AATCCCAAAGGACTTAAAAA-GATAAGGGATAAACCTATCCTAAACGTACACCTTCAGCAT-GAA
64 AAACCCAAAGGACTTAAAAATGAAAAGGGATAAACCTATCCTAAACGTACACCTTCAGCATAG-A
* *
1860838 AGCATAC-CTGGTGATTACCTAGG
128 AGCATACTC-GATGATAACCTAGG
* * *
1860861 ACTCAATTCTAAAAAATTACAAAAATGCCCTTA
1 ACTCGATTCTAAAAAATTACTAAAATGCTCTTA
1860894 TGGGTATACC
Statistics
Matches: 157, Mismatches: 23, Indels: 10
0.83 0.12 0.05
Matches are distributed among these distances:
150 23 0.15
151 70 0.45
152 64 0.41
ACGTcount: A:0.41, C:0.20, G:0.14, T:0.25
Consensus pattern (150 bp):
ACTCGATTCTAAAAAATTACTAAAATGCTCTTACGAATACCTGCGACATAAAAATATCTCAATAA
ACCCAAAGGACTTAAAAATGAAAAGGGATAAACCTATCCTAAACGTACACCTTCAGCATAGAAGC
ATACTCGATGATAACCTAGG
Found at i:1862281 original size:22 final size:22
Alignment explanation
Indices: 1862242--1862283 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
1862232 AGTTGCTGTT
*
1862242 TTTGTATTTGTTTGCTTGCTAA
1 TTTGTATTTGTTTCCTTGCTAA
1862264 TTTGCTATTT-TTTCCTTGCT
1 TTTG-TATTTGTTTCCTTGCT
1862284 GTTCATTTGT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
22 13 0.72
23 5 0.28
ACGTcount: A:0.10, C:0.14, G:0.14, T:0.62
Consensus pattern (22 bp):
TTTGTATTTGTTTCCTTGCTAA
Found at i:1862598 original size:89 final size:89
Alignment explanation
Indices: 1862505--1862680 Score: 232
Period size: 89 Copynumber: 2.0 Consensus size: 89
1862495 TGTTTCTTTG
* * * **
1862505 CTCCTTTGTTGCTACT-ATTGCTTTGAGCTGCTACTATTTTGTTTTTCTTGCTGCTGTCA-GTTT
1 CTCCTTTGCTACTACTGA-TGCTTTAAGCTGCTACTATTTCATTTTTCTTGCTGCTGT-ATGTTT
1862568 CTTTGAGCTGTTGCTA-TTTCATTTTT
64 C-TTGAGCTGTTGCTATTTTCATTTTT
* * *
1862594 CTCCTTTGCTACTGCTGATGCTTTAAGTTGCTGCTATTTCATTTTTCTTGCTGCTGTATGTTTCT
1 CTCCTTTGCTACTACTGATGCTTTAAGCTGCTACTATTTCATTTTTCTTGCTGCTGTATGTTTCT
1862659 TGAGCTGTTGCTATTTTCATTT
66 TGAGCTGTTGCTATTTTCATTT
1862681 GCTACTTTCT
Statistics
Matches: 76, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
88 15 0.20
89 60 0.79
90 1 0.01
ACGTcount: A:0.11, C:0.19, G:0.17, T:0.53
Consensus pattern (89 bp):
CTCCTTTGCTACTACTGATGCTTTAAGCTGCTACTATTTCATTTTTCTTGCTGCTGTATGTTTCT
TGAGCTGTTGCTATTTTCATTTTT
Found at i:1862783 original size:53 final size:53
Alignment explanation
Indices: 1862686--1862787 Score: 136
Period size: 53 Copynumber: 1.9 Consensus size: 53
1862676 CATTTGCTAC
*
1862686 TTTCTTTGTATGCTTACTGAAAAACTAGAATTTCTTATCGTTGCTTGCTCTCT
1 TTTCTTTGTATGCTTACTGAAAAACTAGAATTCCTTATCGTTGCTTGCTCTCT
* * *
1862739 TTTCTTTGTATGCTTGCTG-AAAA-TAGAATTGCCTTTTTCTTTGCTTGCT
1 TTTCTTTGTATGCTTACTGAAAAACTAGAATT-CC-TTATCGTTGCTTGCT
1862788 TCATGTCACT
Statistics
Matches: 43, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
51 7 0.16
52 5 0.12
53 31 0.72
ACGTcount: A:0.19, C:0.18, G:0.15, T:0.49
Consensus pattern (53 bp):
TTTCTTTGTATGCTTACTGAAAAACTAGAATTCCTTATCGTTGCTTGCTCTCT
Found at i:1862837 original size:101 final size:101
Alignment explanation
Indices: 1862727--1862982 Score: 374
Period size: 101 Copynumber: 2.5 Consensus size: 101
1862717 TTCTTATCGT
*
1862727 TGCTTGCTCTCTTTTCTTTGTATGCTTGCTGAAAATAGAATTGCCTTTTTCTTTGCTTGCTT-CA
1 TGCTTGCTCTCTTTTCTTTGTATGCTTGCTGAAAATAGAATTGCCTTCTTCTTTGCTTGCTTGC-
* *
1862791 TGTCACTTCCTTGTATGTTTGCTGAAAAACAAGAAAC
65 TGTCACTCCCTTGTATGCTTGCTGAAAAACAAGAAAC
*
1862828 TGCTTGCTCTCTTTT-TGTTGTATGCTTGCTGAAAATAGAATTGCCTTCTTCCTTGCTTGCTTGC
1 TGCTTGCTCTCTTTTCT-TTGTATGCTTGCTGAAAATAGAATTGCCTTCTTCTTTGCTTGCTTGC
* *
1862892 TGTCACTCCCTTGTATGCTTGCTGAAAAACTAGAAAT
65 TGTCACTCCCTTGTATGCTTGCTGAAAAACAAGAAAC
* * * *
1862929 TGGTTGCTCTCTCTTCTTTGTATGCTTGCT-AAAAGCATAATTGCCTTCTTCTTT
1 TGCTTGCTCTCTTTTCTTTGTATGCTTGCTGAAAA-TAGAATTGCCTTCTTCTTT
1862983 TTTTTTTCAT
Statistics
Matches: 140, Mismatches: 11, Indels: 8
0.88 0.07 0.05
Matches are distributed among these distances:
100 5 0.04
101 133 0.95
102 2 0.01
ACGTcount: A:0.19, C:0.21, G:0.16, T:0.44
Consensus pattern (101 bp):
TGCTTGCTCTCTTTTCTTTGTATGCTTGCTGAAAATAGAATTGCCTTCTTCTTTGCTTGCTTGCT
GTCACTCCCTTGTATGCTTGCTGAAAAACAAGAAAC
Found at i:1864615 original size:6 final size:5
Alignment explanation
Indices: 1864590--1864620 Score: 53
Period size: 5 Copynumber: 6.0 Consensus size: 5
1864580 TGGTTCTTGA
1864590 TTTAT TTTAT TTTAT TTTATT TTTAT TTTAT
1 TTTAT TTTAT TTTAT TTTA-T TTTAT TTTAT
1864621 GATATTTATG
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
5 20 0.80
6 5 0.20
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (5 bp):
TTTAT
Found at i:1864615 original size:11 final size:11
Alignment explanation
Indices: 1864590--1864620 Score: 55
Period size: 11 Copynumber: 2.9 Consensus size: 11
1864580 TGGTTCTTGA
1864590 TTTATTTTA-T
1 TTTATTTTATT
1864600 TTTATTTTATT
1 TTTATTTTATT
1864611 TTTATTTTAT
1 TTTATTTTAT
1864621 GATATTTATG
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 9 0.45
11 11 0.55
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (11 bp):
TTTATTTTATT
Found at i:1864626 original size:16 final size:16
Alignment explanation
Indices: 1864594--1864627 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
1864584 TCTTGATTTA
**
1864594 TTTTATTTTATTTTAT
1 TTTTATTTTATGATAT
1864610 TTTTATTTTATGATAT
1 TTTTATTTTATGATAT
1864626 TT
1 TT
1864628 ATGGAATTCG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.21, C:0.00, G:0.03, T:0.76
Consensus pattern (16 bp):
TTTTATTTTATGATAT
Found at i:1866126 original size:32 final size:32
Alignment explanation
Indices: 1866088--1866165 Score: 102
Period size: 32 Copynumber: 2.4 Consensus size: 32
1866078 CAAACAAATG
**
1866088 TGACTAGGGTGAAACCTAAGTCAAAATGGGGT
1 TGACTAGGGTGAAACCTAAGTCAAAAAAGGGT
* *
1866120 TGACTAGAGTGAAACCTAAGTTAAAAAAGGGT
1 TGACTAGGGTGAAACCTAAGTCAAAAAAGGGT
* *
1866152 TGACCAAGGTGAAA
1 TGACTAGGGTGAAA
1866166 ATGATAAAGT
Statistics
Matches: 39, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
32 39 1.00
ACGTcount: A:0.40, C:0.12, G:0.28, T:0.21
Consensus pattern (32 bp):
TGACTAGGGTGAAACCTAAGTCAAAAAAGGGT
Found at i:1867911 original size:10 final size:10
Alignment explanation
Indices: 1867896--1867925 Score: 51
Period size: 10 Copynumber: 2.9 Consensus size: 10
1867886 TTCCCTCTCT
1867896 TTTTTTTTTG
1 TTTTTTTTTG
1867906 TTTTTTTTTG
1 TTTTTTTTTG
1867916 TTGTTTTTTT
1 TT-TTTTTTT
1867926 TAAATTGCCT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 12 0.63
11 7 0.37
ACGTcount: A:0.00, C:0.00, G:0.10, T:0.90
Consensus pattern (10 bp):
TTTTTTTTTG
Found at i:1867911 original size:13 final size:13
Alignment explanation
Indices: 1867895--1867926 Score: 57
Period size: 13 Copynumber: 2.5 Consensus size: 13
1867885 TTTCCCTCTC
1867895 TTTTTTTT-TTGT
1 TTTTTTTTGTTGT
1867907 TTTTTTTTGTTGT
1 TTTTTTTTGTTGT
1867920 TTTTTTT
1 TTTTTTT
1867927 AAATTGCCTT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 8 0.42
13 11 0.58
ACGTcount: A:0.00, C:0.00, G:0.09, T:0.91
Consensus pattern (13 bp):
TTTTTTTTGTTGT
Found at i:1869589 original size:20 final size:20
Alignment explanation
Indices: 1869564--1869704 Score: 103
Period size: 20 Copynumber: 7.0 Consensus size: 20
1869554 GCTAGAAGCA
*
1869564 ATGTATTGATACAAT-TCATC
1 ATGTATCGATACAATGT-ATC
1869584 ATGTATCGATACAATGTATC
1 ATGTATCGATACAATGTATC
* * *
1869604 ATGTATCAATACAAACAGTGGT-
1 ATGTATCGATAC-AA-TGT-ATC
* * *
1869626 AGGGTATCGATACAAT-AAAC
1 A-TGTATCGATACAATGTATC
*
1869646 ATGTATCGATACAATTGT-CC
1 ATGTATCGATACAA-TGTATC
* *
1869666 ATGTATCGATACAAT-AAAC
1 ATGTATCGATACAATGTATC
1869685 ATGTATCGATACAATGTATC
1 ATGTATCGATACAATGTATC
1869705 GATACAAAGC
Statistics
Matches: 94, Mismatches: 17, Indels: 20
0.72 0.13 0.15
Matches are distributed among these distances:
19 29 0.31
20 47 0.50
21 3 0.03
22 5 0.05
23 10 0.11
ACGTcount: A:0.38, C:0.16, G:0.15, T:0.31
Consensus pattern (20 bp):
ATGTATCGATACAATGTATC
Found at i:1869653 original size:19 final size:19
Alignment explanation
Indices: 1869629--1869699 Score: 106
Period size: 19 Copynumber: 3.7 Consensus size: 19
1869619 CAGTGGTAGG
1869629 GTATCGATACAATAAACAT
1 GTATCGATACAATAAACAT
***
1869648 GTATCGATACAATTGTCCAT
1 GTATCGATACAA-TAAACAT
1869668 GTATCGATACAATAAACAT
1 GTATCGATACAATAAACAT
1869687 GTATCGATACAAT
1 GTATCGATACAAT
1869700 GTATCGATAC
Statistics
Matches: 45, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
19 29 0.64
20 16 0.36
ACGTcount: A:0.41, C:0.17, G:0.13, T:0.30
Consensus pattern (19 bp):
GTATCGATACAATAAACAT
Found at i:1869703 original size:13 final size:13
Alignment explanation
Indices: 1869685--1869711 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
1869675 TACAATAAAC
1869685 ATGTATCGATACA
1 ATGTATCGATACA
1869698 ATGTATCGATACA
1 ATGTATCGATACA
1869711 A
1 A
1869712 AGCATAATGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.41, C:0.15, G:0.15, T:0.30
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:1877473 original size:20 final size:19
Alignment explanation
Indices: 1877419--1877474 Score: 76
Period size: 20 Copynumber: 2.8 Consensus size: 19
1877409 AAAACCCTTA
*
1877419 AAAGTATCGATACACAGTTC
1 AAAGTATCGATACA-TGTTC
1877439 AAAGTATCGATACATGTTGC
1 AAAGTATCGATACATGTT-C
*
1877459 AATGTATCGATACATG
1 AAAGTATCGATACATG
1877475 AAAAAGATGT
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
19 3 0.09
20 30 0.91
ACGTcount: A:0.38, C:0.16, G:0.18, T:0.29
Consensus pattern (19 bp):
AAAGTATCGATACATGTTC
Found at i:1877550 original size:19 final size:19
Alignment explanation
Indices: 1877526--1877590 Score: 70
Period size: 21 Copynumber: 3.6 Consensus size: 19
1877516 TAGCCAAACT
1877526 TGTATCGATACACAAAATA
1 TGTATCGATACACAAAATA
1877545 TGTATCGAT--AC---A-A
1 TGTATCGATACACAAAATA
1877558 TGTATCGATACACAAAAAATA
1 TGTATCGATACAC--AAAATA
1877579 TGTATCGATACA
1 TGTATCGATACA
1877591 TTGGCTTGTA
Statistics
Matches: 38, Mismatches: 0, Indels: 14
0.73 0.00 0.27
Matches are distributed among these distances:
13 10 0.26
14 1 0.03
15 2 0.05
17 2 0.05
19 9 0.24
20 1 0.03
21 13 0.34
ACGTcount: A:0.45, C:0.15, G:0.12, T:0.28
Consensus pattern (19 bp):
TGTATCGATACACAAAATA
Found at i:1877562 original size:13 final size:13
Alignment explanation
Indices: 1877544--1877569 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
1877534 TACACAAAAT
1877544 ATGTATCGATACA
1 ATGTATCGATACA
1877557 ATGTATCGATACA
1 ATGTATCGATACA
1877570 CAAAAAATAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:1877567 original size:32 final size:33
Alignment explanation
Indices: 1877526--1877590 Score: 114
Period size: 34 Copynumber: 2.0 Consensus size: 33
1877516 TAGCCAAACT
1877526 TGTATCGATACAC-AAAATATGTATCGATACAA
1 TGTATCGATACACAAAAATATGTATCGATACAA
1877558 TGTATCGATACACAAAAAATATGTATCGATACA
1 TGTATCGATACAC-AAAAATATGTATCGATACA
1877591 TTGGCTTGTA
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
32 13 0.42
34 18 0.58
ACGTcount: A:0.45, C:0.15, G:0.12, T:0.28
Consensus pattern (33 bp):
TGTATCGATACACAAAAATATGTATCGATACAA
Found at i:1879788 original size:21 final size:21
Alignment explanation
Indices: 1879755--1879804 Score: 57
Period size: 21 Copynumber: 2.3 Consensus size: 21
1879745 TTGCAAGTTG
*
1879755 AAATAAAGAAGTTGGCTAATGA
1 AAATAAAGAAGTTAGCTAA-GA
*
1879777 AAATAATG-AGTTAGCTAAGAA
1 AAATAAAGAAGTTAGCTAAG-A
1879798 AAATAAA
1 AAATAAA
1879805 AACTTGCATA
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
20 1 0.04
21 16 0.67
22 7 0.29
ACGTcount: A:0.56, C:0.04, G:0.18, T:0.22
Consensus pattern (21 bp):
AAATAAAGAAGTTAGCTAAGA
Found at i:1883727 original size:13 final size:13
Alignment explanation
Indices: 1883709--1883746 Score: 58
Period size: 13 Copynumber: 2.9 Consensus size: 13
1883699 CATTTTTCTT
*
1883709 TGTATCAATACAA
1 TGTATCGATACAA
*
1883722 TGTATCGATACAC
1 TGTATCGATACAA
1883735 TGTATCGATACA
1 TGTATCGATACA
1883747 GGAGGATTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
13 23 1.00
ACGTcount: A:0.37, C:0.18, G:0.13, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:1883901 original size:20 final size:20
Alignment explanation
Indices: 1883858--1883903 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 20
1883848 AAATCTTTTG
1883858 CAAAATACTTGTTTTTCACTT
1 CAAAATACTTGTTTTTCAC-T
*
1883879 CAAATTACTTCGTTTTTCA-T
1 CAAAATACTT-GTTTTTCACT
1883899 CAAAA
1 CAAAA
1883904 CCAGCATCAA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
20 5 0.23
21 9 0.41
22 8 0.36
ACGTcount: A:0.33, C:0.20, G:0.04, T:0.43
Consensus pattern (20 bp):
CAAAATACTTGTTTTTCACT
Found at i:1889993 original size:155 final size:155
Alignment explanation
Indices: 1889725--1890093 Score: 358
Period size: 155 Copynumber: 2.4 Consensus size: 155
1889715 GTTTAAATGC
* * * *
1889725 AAAATTA-GCAAAATG-TCCTTAAGGTATACCTTCAACATGAAAGTATCCTGGCATCCTTAAAGG
1 AAAATTATG-AAAATGCTCC-TAAGGTATACCTTCGACATGAAAGTATCCTGGTAACCTTAAAAG
** ** * *
1889788 ACTTAAAAATGATCATAACTAGACGAACCTATCCTAAATGCACTCTTTTGG-AGTAAAAG-CATC
64 ACACAAAAATGATCATAAAAAGACGAACCTATCCTAAATGCACACCTTTGGCA-TAAAAGTCA-C
** * *
1889851 TTGGTGACAACCTAAGATTTGATTTT-AGA
127 CCGGTGACAACCTAAGACTCGATTTTGA-A
* *
1889880 AAAATTATGAAAATGCTCCTAAGGTATACATTCGACATGAAAGTATCCTAGTAACCTTAAAAGAC
1 AAAATTATGAAAATGCTCCTAAGGTATACCTTCGACATGAAAGTATCCTGGTAACCTTAAAAGAC
* * * * * *
1889945 ACGAAAA-GATCATAAAAATGATGAACCTATCCTATATGTAGACCTTTGGCATAAAAGTGACCCG
66 ACAAAAATGATCATAAAAA-GACGAACCTATCCTAAATGCACACCTTTGGCATAAAAGTCACCCG
* * *
1890009 GTGACTATCTAGGACTCGATTTTGAA
130 GTGACAACCTAAGACTCGATTTTGAA
* * * *
1890035 AAAATTATGAAAATGCCTCC--ACGTATGCCTTCGACATAAAAGTATCCCGGTAACCTTAA
1 AAAATTATGAAAATG-CTCCTAAGGTATACCTTCGACATGAAAGTATCCTGGTAACCTTAA
1890094 TGGATACTAA
Statistics
Matches: 176, Mismatches: 31, Indels: 15
0.79 0.14 0.07
Matches are distributed among these distances:
154 42 0.24
155 123 0.70
156 11 0.06
ACGTcount: A:0.38, C:0.19, G:0.16, T:0.27
Consensus pattern (155 bp):
AAAATTATGAAAATGCTCCTAAGGTATACCTTCGACATGAAAGTATCCTGGTAACCTTAAAAGAC
ACAAAAATGATCATAAAAAGACGAACCTATCCTAAATGCACACCTTTGGCATAAAAGTCACCCGG
TGACAACCTAAGACTCGATTTTGAA
Found at i:1890568 original size:155 final size:157
Alignment explanation
Indices: 1890190--1890652 Score: 499
Period size: 155 Copynumber: 2.9 Consensus size: 157
1890180 CAATTAAAAT
* ** * * *
1890190 CCTAAACTTTTGAAAATTTTATTTCATACTCGATGAAAAACCAAAAGGATACGAAAAGCCTTGAA
1 CCTAAACTTTTGAAAATTTCATTTCATACTCGATGAAAAACTGAGAGGATATGAAAAGTCTTGAA
* * * *
1890255 AGTTTTGATACCTCTACGAAAGGCCATAGGAATAATAAAAATCTTTAAAAATGACTAAAATGATG
66 AATTTTTATACCTCTACGAAAGG-CATAGGAATAAAAAAAAACTTTAAAAATGACTAAAATGAT-
* *
1890320 ATTTTATAGCTAAAAACTAAAATTTGCTATTAATC
129 AATTT-TACCT-----CTAAAATTTGCTATTAATC
* * * *
1890355 CTTGAACTTTTGAAAATTTCATTTCATATTCGATGAAAAACTGAGAGGATATGGAAAGTCTTGAA
1 CCTAAACTTTTGAAAATTTCATTTCATACTCGATGAAAAACTGAGAGGATATGAAAAGTCTTGAA
*
1890420 AATTTTTATGCC-CTACGAAAGGTC-TAGGAATAAAAAAAAACTTTAAAAATGACTAAAATGATA
66 AATTTTTATACCTCTACGAAAGG-CATAGGAATAAAAAAAAACTTTAAAAATGACTAAAATGATA
1890483 ATTTTACCTCTAAAATTTGCTATTTAATC
130 ATTTTACCTCTAAAATTTGCTA-TTAATC
* ** * * *
1890512 CCTAAAC-TTT-CAAATTTCATTTTGTACTCGATGGAAAATTGAGAGGATATGAAAAGT-TTTAA
1 CCTAAACTTTTGAAAATTTCATTTCATACTCGATGAAAAACTGAGAGGATATGAAAAGTCTTGAA
* * * * * *
1890574 AAATTTTATACCTCTACGAAAGGCATA--AAGATAATAGAAATTTTCAAAAATGACTAAAATAAT
66 AATTTTTATACCTCTACGAAAGGCATAGGAATA-AAAAAAAACTTT-AAAAATGACTAAAATGAT
*
1890637 GATTTTACCTCTAAAA
129 AATTTTACCTCTAAAA
1890653 ACTAAAATTT
Statistics
Matches: 257, Mismatches: 36, Indels: 20
0.82 0.12 0.06
Matches are distributed among these distances:
153 3 0.01
154 24 0.09
155 84 0.33
156 16 0.06
157 11 0.04
161 4 0.02
162 4 0.02
163 36 0.14
164 11 0.04
165 64 0.25
ACGTcount: A:0.43, C:0.13, G:0.13, T:0.32
Consensus pattern (157 bp):
CCTAAACTTTTGAAAATTTCATTTCATACTCGATGAAAAACTGAGAGGATATGAAAAGTCTTGAA
AATTTTTATACCTCTACGAAAGGCATAGGAATAAAAAAAAACTTTAAAAATGACTAAAATGATAA
TTTTACCTCTAAAATTTGCTATTAATC
Found at i:1896065 original size:20 final size:20
Alignment explanation
Indices: 1896040--1896080 Score: 73
Period size: 20 Copynumber: 2.0 Consensus size: 20
1896030 ACAAGTAACA
*
1896040 ATCAATTCCAGCAAATAAAC
1 ATCAATTCCAACAAATAAAC
1896060 ATCAATTCCAACAAATAAAC
1 ATCAATTCCAACAAATAAAC
1896080 A
1 A
1896081 CTAGCGAAAC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.54, C:0.24, G:0.02, T:0.20
Consensus pattern (20 bp):
ATCAATTCCAACAAATAAAC
Found at i:1900798 original size:9 final size:9
Alignment explanation
Indices: 1900784--1900809 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
1900774 CATAGGGAAA
1900784 TCAAATGCT
1 TCAAATGCT
1900793 TCAAATGCT
1 TCAAATGCT
1900802 TCAAATGC
1 TCAAATGC
1900810 CTTGGAAAGG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.35, C:0.23, G:0.12, T:0.31
Consensus pattern (9 bp):
TCAAATGCT
Found at i:1903735 original size:49 final size:49
Alignment explanation
Indices: 1903663--1904311 Score: 784
Period size: 49 Copynumber: 13.9 Consensus size: 49
1903653 GAAGCCTAGC
* * *
1903663 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
* * *
1903712 TAAGTCCAATGTAGTTGGCCTTGACTCAGCACAATGGCACCTTCATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
**
1903761 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACC-TCGCCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
*
1903809 TAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCA----C--CTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
* * *
1903852 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
* *
1903901 TAACTCCAATGTAGCTGGCCTTGAATCAACACATTGGCA----C--CTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
* * * *
1903944 TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
*
1903993 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTAGCA----C--CTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
* * * * *
1904036 TAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
1904085 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTT--TC--
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
* * * *
1904130 --AGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
1904177 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA----C--CTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
* * * * *
1904220 TAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
1904269 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTT
1904312 TAAGTCCAAT
Statistics
Matches: 514, Mismatches: 56, Indels: 60
0.82 0.09 0.10
Matches are distributed among these distances:
43 188 0.37
45 5 0.01
47 4 0.01
48 43 0.08
49 274 0.53
ACGTcount: A:0.25, C:0.26, G:0.18, T:0.31
Consensus pattern (49 bp):
TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
Found at i:1903946 original size:92 final size:92
Alignment explanation
Indices: 1903758--1904330 Score: 959
Period size: 92 Copynumber: 6.2 Consensus size: 92
1903748 GCACCTTCAT
* * **
1903758 CTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACC-TCGCCTTTAAGTCCAATGTA
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATGTA
*
1903822 GCTGGCCTTGACTCAGCACATTGGCAC
66 GCTGGCCTTGAATCAGCACATTGGCAC
* *
1903849 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAACTCCAATGTA
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATGTA
*
1903914 GCTGGCCTTGAATCAACACATTGGCAC
66 GCTGGCCTTGAATCAGCACATTGGCAC
* *
1903941 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGTA
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATGTA
*
1904006 GCTGGCCTTGAATCAGCACATTAGCAC
66 GCTGGCCTTGAATCAGCACATTGGCAC
* * *
1904033 CTTTAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGTCCAATGTA
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATGTA
1904098 GCTGGCCTTGAATCAGCACATTGGCAC
66 GCTGGCCTTGAATCAGCACATTGGCAC
* * *
1904125 CTTTCAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGTA
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATGTA
1904190 GCTGGCCTTGAATCAGCACATTGGCAC
66 GCTGGCCTTGAATCAGCACATTGGCAC
* * *
1904217 CTTTAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGTA
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATGTA
1904282 GCTGGCCTTGAATCAGCACATTGGCAC
66 GCTGGCCTTGAATCAGCACATTGGCAC
1904309 CTTTAAGTCCAATATAGCTGGC
1 CTTTAAGTCCAATATAGCTGGC
1904331 AAAAATTTTT
Statistics
Matches: 455, Mismatches: 26, Indels: 1
0.94 0.05 0.00
Matches are distributed among these distances:
91 42 0.09
92 413 0.91
ACGTcount: A:0.25, C:0.26, G:0.18, T:0.31
Consensus pattern (92 bp):
CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATGTA
GCTGGCCTTGAATCAGCACATTGGCAC
Found at i:1904073 original size:184 final size:184
Alignment explanation
Indices: 1903663--1904330 Score: 1086
Period size: 184 Copynumber: 3.6 Consensus size: 184
1903653 GAAGCCTAGC
* *
1903663 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGTCCAATGTAGTT
1 TAAGCCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGTCCAATGTAGCT
* * * *
1903728 GGCCTTGACTCAGCACAATGGCACCTTCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCAC
66 GGCCTTGAATCAGCACATTGGCA----C--CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCAT
* ** *
1903793 ATTGGCA-CCTCGCCTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTT
125 ATTGGCATCTTCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTT
* *
1903852 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAACTCCAATGTAGCT
1 TAAGCCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGTCCAATGTAGCT
* *
1903917 GGCCTTGAATCAACACATTGGCACCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGC
66 GGCCTTGAATCAGCACATTGGCACCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGC
*
1903982 ATCTTCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTAGCACCTT
131 ATCTTCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTT
*
1904036 TAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGTCCAATGTAGCT
1 TAAGCCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGTCCAATGTAGCT
* *
1904101 GGCCTTGAATCAGCACATTGGCACCTTTCAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGC
66 GGCCTTGAATCAGCACATTGGCACCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGC
1904166 ATCTTCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTT
131 ATCTTCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTT
* * *
1904220 TAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGTAGCT
1 TAAGCCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGTCCAATGTAGCT
1904285 GGCCTTGAATCAGCACATTGGCACCTTTAAGTCCAATATAGCTGGC
66 GGCCTTGAATCAGCACATTGGCACCTTTAAGTCCAATATAGCTGGC
1904331 AAAAATTTTT
Statistics
Matches: 455, Mismatches: 23, Indels: 7
0.94 0.05 0.01
Matches are distributed among these distances:
183 39 0.09
184 332 0.73
185 1 0.00
189 83 0.18
ACGTcount: A:0.25, C:0.26, G:0.18, T:0.31
Consensus pattern (184 bp):
TAAGCCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGTCCAATGTAGCT
GGCCTTGAATCAGCACATTGGCACCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGC
ATCTTCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTT
Found at i:1904396 original size:20 final size:20
Alignment explanation
Indices: 1904352--1904409 Score: 73
Period size: 20 Copynumber: 3.0 Consensus size: 20
1904342 ATTTCAACGA
***
1904352 TTTGTATCGATACATAAAGT
1 TTTGTATCGATACATATTTT
*
1904372 GTTGTATCGATACATATTTT
1 TTTGTATCGATACATATTTT
1904392 TTTGTATCGATACA-ATTT
1 TTTGTATCGATACATATTT
1904410 AAGCTACTGC
Statistics
Matches: 33, Mismatches: 5, Indels: 1
0.85 0.13 0.03
Matches are distributed among these distances:
19 4 0.12
20 29 0.88
ACGTcount: A:0.29, C:0.10, G:0.14, T:0.47
Consensus pattern (20 bp):
TTTGTATCGATACATATTTT
Found at i:1904521 original size:52 final size:53
Alignment explanation
Indices: 1904463--1904609 Score: 149
Period size: 52 Copynumber: 2.8 Consensus size: 53
1904453 CGATACATTA
*** * *
1904463 TATCGATACACCGAT-CTTTGTATCGATACAT-TCAGGCAAATTTGCCCAGATG
1 TATCGATACACCGATAAAATGTATCGACACATGT-AGACAAATTTGCCCAGATG
**
1904515 TATCGATACA-TTATAAAATGTATCGACACATGTAGACAAATTTGCCCAGATG
1 TATCGATACACCGATAAAATGTATCGACACATGTAGACAAATTTGCCCAGATG
* * * * *
1904567 TATCGATACA-CTATTAAATGTATCGATACATGCAGATAAATTT
1 TATCGATACACCGATAAAATGTATCGACACATGTAGACAAATTT
1904610 TCATATTTCG
Statistics
Matches: 81, Mismatches: 12, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
51 2 0.02
52 78 0.96
53 1 0.01
ACGTcount: A:0.35, C:0.18, G:0.15, T:0.31
Consensus pattern (53 bp):
TATCGATACACCGATAAAATGTATCGACACATGTAGACAAATTTGCCCAGATG
Found at i:1908627 original size:174 final size:176
Alignment explanation
Indices: 1908335--1908685 Score: 616
Period size: 174 Copynumber: 2.0 Consensus size: 176
1908325 TTTTTATCAT
*
1908335 GGACATGTAGGTGATAATGCATGAGCATTTTTCATATTACACGTCCTTTTTCTTTGATGGGGCAT
1 GGACATGTAGGTGATAATGCATGAGCATTTTTCATATTACACGTCCTTTTTCTTTGATAGGGCAT
1908400 GCTTGTTATGCTATCCGATTGAGGGCTAACCTCCTGTCAACAAATGGGAGATGGTAAGCAAATGC
66 GCTTGTTATGCTATCCGATTGAGGGCTAACCTCCTGTCAACAAATGGGAGATGGTAAGCAAATGC
*
1908465 TATCGCCATAGTGCCCATGTCTTCAATAAGTCGTCATGCTATCCAA
131 TATCGCCACAGTGCCCATGTCTTCAATAAGTCGTCATGCTATCCAA
* *
1908511 GGACATGTAGGTGATAATGCATGAGCA-TTTTCATATTACGCTTCCTTTTTCTTTGATAGGGCAT
1 GGACATGTAGGTGATAATGCATGAGCATTTTTCATATTACACGTCCTTTTTCTTTGATAGGGCAT
* * *
1908575 GC-TGTTATGCTGTCCGATTGATGGCTAACCTCCTGTCAACAAATGGGAGATGGTAAGCGAATGC
66 GCTTGTTATGCTATCCGATTGAGGGCTAACCTCCTGTCAACAAATGGGAGATGGTAAGCAAATGC
*
1908639 TATCGCCACCGTGCCCATGTCTTCAATAAGTCGTCATGCTATCCAA
131 TATCGCCACAGTGCCCATGTCTTCAATAAGTCGTCATGCTATCCAA
1908685 G
1 G
1908686 TCCTAGCTTG
Statistics
Matches: 167, Mismatches: 8, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
174 104 0.62
175 36 0.22
176 27 0.16
ACGTcount: A:0.25, C:0.21, G:0.23, T:0.32
Consensus pattern (176 bp):
GGACATGTAGGTGATAATGCATGAGCATTTTTCATATTACACGTCCTTTTTCTTTGATAGGGCAT
GCTTGTTATGCTATCCGATTGAGGGCTAACCTCCTGTCAACAAATGGGAGATGGTAAGCAAATGC
TATCGCCACAGTGCCCATGTCTTCAATAAGTCGTCATGCTATCCAA
Found at i:1909412 original size:34 final size:35
Alignment explanation
Indices: 1909374--1909440 Score: 102
Period size: 37 Copynumber: 1.9 Consensus size: 35
1909364 CCTTACAACA
1909374 CTATC-TTTC-AAGGCTAAGATAGAAACCTCTCTCT
1 CTATCTTTTCAAAGGCTAAGATAG-AACCTCTCTCT
1909408 CTATCTTTTTCAAAGGCTAAGATAGAACCTCTC
1 CTATC-TTTTCAAAGGCTAAGATAGAACCTCTC
1909441 AATCACTTAG
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
34 5 0.17
36 12 0.40
37 13 0.43
ACGTcount: A:0.30, C:0.25, G:0.12, T:0.33
Consensus pattern (35 bp):
CTATCTTTTCAAAGGCTAAGATAGAACCTCTCTCT
Found at i:1909937 original size:13 final size:13
Alignment explanation
Indices: 1909919--1909944 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
1909909 CTATTTATGA
1909919 TGTATCGATACAC
1 TGTATCGATACAC
1909932 TGTATCGATACAC
1 TGTATCGATACAC
1909945 ACAAATATGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.23, G:0.15, T:0.31
Consensus pattern (13 bp):
TGTATCGATACAC
Found at i:1910082 original size:22 final size:22
Alignment explanation
Indices: 1910027--1910082 Score: 105
Period size: 21 Copynumber: 2.6 Consensus size: 22
1910017 ACAGTGACCT
1910027 ATGAACAGTGATGTATCGATAC
1 ATGAACAGTGATGTATCGATAC
1910049 ATGAA-AGTGATGTATCGATAC
1 ATGAACAGTGATGTATCGATAC
1910070 ATGAACAGTGATG
1 ATGAACAGTGATG
1910083 AATAGTGATG
Statistics
Matches: 33, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
21 21 0.64
22 12 0.36
ACGTcount: A:0.38, C:0.11, G:0.25, T:0.27
Consensus pattern (22 bp):
ATGAACAGTGATGTATCGATAC
Found at i:1910089 original size:10 final size:10
Alignment explanation
Indices: 1910070--1910100 Score: 53
Period size: 10 Copynumber: 3.1 Consensus size: 10
1910060 GTATCGATAC
1910070 ATGAACAGTG
1 ATGAACAGTG
*
1910080 ATGAATAGTG
1 ATGAACAGTG
1910090 ATGAACAGTG
1 ATGAACAGTG
1910100 A
1 A
1910101 AAATGAGATT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.42, C:0.06, G:0.29, T:0.23
Consensus pattern (10 bp):
ATGAACAGTG
Found at i:1913302 original size:6 final size:6
Alignment explanation
Indices: 1913291--1913326 Score: 54
Period size: 6 Copynumber: 5.8 Consensus size: 6
1913281 CTCACCTAAA
*
1913291 AAAAAC AAAAAC AAAAAC AAAAAA AAGAAAC AAAAA
1 AAAAAC AAAAAC AAAAAC AAAAAC AA-AAAC AAAAA
1913327 AAACAAAACA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
6 22 0.81
7 5 0.19
ACGTcount: A:0.86, C:0.11, G:0.03, T:0.00
Consensus pattern (6 bp):
AAAAAC
Found at i:1913313 original size:13 final size:12
Alignment explanation
Indices: 1913288--1913339 Score: 68
Period size: 12 Copynumber: 4.1 Consensus size: 12
1913278 AGGCTCACCT
1913288 AAAAAAAACAAA
1 AAAAAAAACAAA
*
1913300 AACAAAAACAAA
1 AAAAAAAACAAA
1913312 AAAAAGAAACAAAA
1 AAAAA-AAAC-AAA
1913326 AAAACAAAACAAA
1 AAAA-AAAACAAA
1913339 A
1 A
1913340 GAAGGAAAAA
Statistics
Matches: 35, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
12 15 0.43
13 8 0.23
14 11 0.31
15 1 0.03
ACGTcount: A:0.87, C:0.12, G:0.02, T:0.00
Consensus pattern (12 bp):
AAAAAAAACAAA
Found at i:1913348 original size:14 final size:14
Alignment explanation
Indices: 1913288--1913339 Score: 58
Period size: 13 Copynumber: 4.0 Consensus size: 14
1913278 AGGCTCACCT
1913288 AAAA-AAAAC-AAA
1 AAAAGAAAACAAAA
*
1913300 AACA-AAAACAAAA
1 AAAAGAAAACAAAA
1913313 AAAAG-AAACAAAA
1 AAAAGAAAACAAAA
*
1913326 AAAACAAAACAAAA
1 AAAAGAAAACAAAA
1913340 GAAGGAAAAA
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
12 8 0.24
13 18 0.53
14 8 0.24
ACGTcount: A:0.87, C:0.12, G:0.02, T:0.00
Consensus pattern (14 bp):
AAAAGAAAACAAAA
Found at i:1913350 original size:23 final size:22
Alignment explanation
Indices: 1913288--1913342 Score: 76
Period size: 22 Copynumber: 2.5 Consensus size: 22
1913278 AGGCTCACCT
* *
1913288 AAAAAAAACAAA-AACAAAAAC
1 AAAAAAAAGAAACAAAAAAAAC
1913309 AAAAAAAAGAAACAAAAAAAAC
1 AAAAAAAAGAAACAAAAAAAAC
1913331 AAAACAAAAGAA
1 AAAA-AAAAGAA
1913343 GGAAAAAACC
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
21 11 0.37
22 12 0.40
23 7 0.23
ACGTcount: A:0.85, C:0.11, G:0.04, T:0.00
Consensus pattern (22 bp):
AAAAAAAAGAAACAAAAAAAAC
Found at i:1914390 original size:30 final size:30
Alignment explanation
Indices: 1914283--1914470 Score: 191
Period size: 31 Copynumber: 6.0 Consensus size: 30
1914273 AATTCTTCAA
*
1914283 ATCTCTTCTCAAAG-CCTACGACTCAGTGGC
1 ATCTTTTCTCAAAGTCC-ACGACTCAGTGGC
*
1914313 AATCTCTTCTCAAAGTCCACGACTCAGTGGC
1 -ATCTTTTCTCAAAGTCCACGACTCAGTGGC
1914344 ATCCTTTTCTTCAAAGTCCACGACTCAGTGGC
1 AT-CTTTTC-TCAAAGTCCACGACTCAGTGGC
1914376 AT-TTTGTCTCAAAGTCCACGACTCAGTGGC
1 ATCTTT-TCTCAAAGTCCACGACTCAGTGGC
* * * *
1914406 ATTTTTTCTTCAAAGCCCACAACTCTGTGGC
1 ATCTTTTC-TCAAAGTCCACGACTCAGTGGC
* * * *
1914437 ACCTTGTTCCTTCTAAGTCCACAACTCCGTGGC
1 ATCTT-TT-C-TCAAAGTCCACGACTCAGTGGC
1914470 A
1 A
1914471 CCCTTTTAAA
Statistics
Matches: 140, Mismatches: 9, Indels: 14
0.86 0.06 0.09
Matches are distributed among these distances:
30 31 0.22
31 59 0.42
32 28 0.20
33 22 0.16
ACGTcount: A:0.23, C:0.31, G:0.16, T:0.30
Consensus pattern (30 bp):
ATCTTTTCTCAAAGTCCACGACTCAGTGGC
Found at i:1914621 original size:34 final size:34
Alignment explanation
Indices: 1914417--1914990 Score: 666
Period size: 34 Copynumber: 16.8 Consensus size: 34
1914407 TTTTTTCTTC
* * * *
1914417 AAAGCCCACAACTCTGTGGCACCTTGTTCCTTCT
1 AAAGCCCACAACTCCGTGGCACCTTTTTCTTTTT
*
1914451 -AAGTCCACAACTCCGTGGCACC-----C-TTTT
1 AAAGCCCACAACTCCGTGGCACCTTTTTCTTTTT
* * * *
1914478 AAAGCCCACAATTTCGTGGACAACCTTTTTCTTCTC
1 AAAGCCCACAACTCCGTGG-C-ACCTTTTTCTTTTT
* *
1914514 AAAGCCCACCACTCCGTGGCA-CTTTTACTTTTT
1 AAAGCCCACAACTCCGTGGCACCTTTTTCTTTTT
*
1914547 AATGCCCACAACTCCGTGGCACTCTTTTTCCCTTTTT
1 AAAGCCCACAACTCCGTGGCAC-CTTTTT--CTTTTT
1914584 AAAGCCCACAACTCCGTGGCACCTTTTTCTTTTT
1 AAAGCCCACAACTCCGTGGCACCTTTTTCTTTTT
* *
1914618 AAAGCCCGCCACTCCGTGGCACC-TTTTCTTTTT
1 AAAGCCCACAACTCCGTGGCACCTTTTTCTTTTT
* * * * * *
1914651 -AAGTCCACGACCCCGTGGCACCTTGTTCCTTTC
1 AAAGCCCACAACTCCGTGGCACCTTTTTCTTTTT
1914684 AAAGCCCACAACTCCGTGGCACCTTTTTCTTTTT
1 AAAGCCCACAACTCCGTGGCACCTTTTTCTTTTT
*
1914718 AAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTTTC
1 AAAGCCCACAACTCCGTGGCAC-CTTTTT--CTTTTT
1914755 AAAGCCCACAACTCCGTGGCACCTTTTTCTTTTT
1 AAAGCCCACAACTCCGTGGCACCTTTTTCTTTTT
*
1914789 AAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTTTC
1 AAAGCCCACAACTCCGTGGCAC-CTTTTT--CTTTTT
* *
1914826 AAAGCCCACATCTTCGTGGCACCTTTTTCTTTTT
1 AAAGCCCACAACTCCGTGGCACCTTTTTCTTTTT
* *
1914860 AAAGCCCACAACTCCGTGGAACTCTTTTTCCCTTTT
1 AAAGCCCACAACTCCGTGGCAC-CTTTTT-CTTTTT
1914896 AAAGCCCACAACTCCGTGGCACCTTTTTCTTTTT
1 AAAGCCCACAACTCCGTGGCACCTTTTTCTTTTT
*
1914930 AAAGCCCACAACTCTGTGGCACTCTTTTTCCTTTTT
1 AAAGCCCACAACTCCGTGGCAC-CTTTTT-CTTTTT
* * *
1914966 -AAGTCCACAACTCCATGGCATCTTT
1 AAAGCCCACAACTCCGTGGCACCTTT
1914991 CTCCCTTCCT
Statistics
Matches: 465, Mismatches: 50, Indels: 50
0.82 0.09 0.09
Matches are distributed among these distances:
27 3 0.01
28 16 0.03
29 1 0.00
30 3 0.01
32 18 0.04
33 65 0.14
34 158 0.34
35 54 0.12
36 68 0.15
37 79 0.17
ACGTcount: A:0.20, C:0.34, G:0.12, T:0.34
Consensus pattern (34 bp):
AAAGCCCACAACTCCGTGGCACCTTTTTCTTTTT
Found at i:1914635 original size:71 final size:70
Alignment explanation
Indices: 1914474--1914990 Score: 685
Period size: 71 Copynumber: 7.4 Consensus size: 70
1914464 CGTGGCACCC
* * * * *
1914474 TTTTAAAGCCCACAATTTCGTGGACAACCTTTTTCTTCTCAAAGCCCACCACTCCGTGGCA--C-
1 TTTTAAAGCCCACAACTCCGTGG-C-ACCTTTTTCTTTTTAAAGCCCACAACTCCGTGGCACTCT
*
1914536 TTTTACT
64 TTTTCCT
*
1914543 TTTTAATGCCCACAACTCCGTGGCACTCTTTTTCCCTTTTTAAAGCCCACAACTCCGTGGCAC-C
1 TTTTAAAGCCCACAACTCCGTGGCAC-CTTTTT--CTTTTTAAAGCCCACAACTCCGTGGCACTC
1914607 TTTTT-CT
63 TTTTTCCT
* * * * * *
1914614 TTTTAAAGCCCGCCACTCCGTGGCACC-TTTTCTTTTT-AAGTCCACGACCCCGTGGCAC-CTTG
1 TTTTAAAGCCCACAACTCCGTGGCACCTTTTTCTTTTTAAAGCCCACAACTCCGTGGCACTCTTT
1914676 TTCC-
66 TTCCT
*
1914680 TTTCAAAGCCCACAACTCCGTGGCACCTTTTTCTTTTTAAAGCCCACAACTCCGTGGCACTCTTT
1 TTTTAAAGCCCACAACTCCGTGGCACCTTTTTCTTTTTAAAGCCCACAACTCCGTGGCACTCTTT
1914745 TTCCCT
66 TT-CCT
*
1914751 TTTCAAAGCCCACAACTCCGTGGCACCTTTTTCTTTTTAAAGCCCACAACTCCGTGGCACTCTTT
1 TTTTAAAGCCCACAACTCCGTGGCACCTTTTTCTTTTTAAAGCCCACAACTCCGTGGCACTCTTT
1914816 TTCCCT
66 TT-CCT
* * * *
1914822 TTTCAAAGCCCACATCTTCGTGGCACCTTTTTCTTTTTAAAGCCCACAACTCCGTGGAACTCTTT
1 TTTTAAAGCCCACAACTCCGTGGCACCTTTTTCTTTTTAAAGCCCACAACTCCGTGGCACTCTTT
*
1914887 TTCCC
66 TTCCT
*
1914892 TTTTAAAGCCCACAACTCCGTGGCACCTTTTTCTTTTTAAAGCCCACAACTCTGTGGCACTCTTT
1 TTTTAAAGCCCACAACTCCGTGGCACCTTTTTCTTTTTAAAGCCCACAACTCCGTGGCACTCTTT
1914957 TTCCT
66 TTCCT
* * *
1914962 TTTT-AAGTCCACAACTCCATGGCATCTTT
1 TTTTAAAGCCCACAACTCCGTGGCACCTTT
1914991 CTCCCTTCCT
Statistics
Matches: 404, Mismatches: 33, Indels: 22
0.88 0.07 0.05
Matches are distributed among these distances:
66 47 0.12
67 19 0.05
68 25 0.06
69 51 0.13
70 97 0.24
71 161 0.40
72 4 0.01
ACGTcount: A:0.20, C:0.33, G:0.12, T:0.35
Consensus pattern (70 bp):
TTTTAAAGCCCACAACTCCGTGGCACCTTTTTCTTTTTAAAGCCCACAACTCCGTGGCACTCTTT
TTCCT
Found at i:1914858 original size:105 final size:101
Alignment explanation
Indices: 1914414--1915010 Score: 654
Period size: 105 Copynumber: 5.8 Consensus size: 101
1914404 GCATTTTTTC
* * * *
1914414 TTCAAAGCCCACAACTCTGTGGCACCTTGTTCCTTCT-AAGTCCACAACTCCGTGGCA-C-----
1 TTCAAAGCCCACAACTCCGTGGCACCTT-TTTCTTTTAAAGCCCACAACTCCGTGGCACCTTTTT
* *
1914472 CCTTTTAAAGCCCACAATTTCGTGGACAACCTTTTTCTT
65 CCTTTTAAAGCCCACAACTCCGTGG-C-ACCTTTTTCTT
* * * *
1914511 CTCAAAGCCCACCACTCCGTGGCA-CTTTTACTTTTTAATGCCCACAACTCCGTGGCACTCTTTT
1 TTCAAAGCCCACAACTCCGTGGCACCTTTTTC-TTTTAAAGCCCACAACTCCGTGGCAC-CTTTT
1914575 TCCCTTTTTAAAGCCCACAACTCCGTGGCACCTTTTTCTT
64 T-CC-TTTTAAAGCCCACAACTCCGTGGCACCTTTTTCTT
* * * * * * * *
1914615 TTTAAAGCCCGCCACTCCGTGGCACC-TTTTCTTTTTAAGTCCACGACCCCGTGGCACCTTGTTC
1 TTCAAAGCCCACAACTCCGTGGCACCTTTTTCTTTTAAAGCCCACAACTCCGTGGCACCTTTTTC
*
1914679 CTTTCAAAGCCCACAACTCCGTGGCACCTTTTTCTT
66 CTTTTAAAGCCCACAACTCCGTGGCACCTTTTTCTT
*
1914715 TTTAAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTTTCAAAGCCCACAACTCCGTGGCACCTT
1 TTCAAAGCCCACAACTCCGTGGCAC-CTTTTT--CTTTT-AAAGCCCACAACTCCGTGGCACCTT
*
1914780 TTTCTTTTTAAAGCCCACAACTCCGTGGCACTCTTTTTCCCTT
62 TTTCCTTTTAAAGCCCACAACTCCGTGGCAC-CTTTTT--CTT
* * *
1914823 TTCAAAGCCCACATCTTCGTGGCACCTTTTTCTTTTTAAAGCCCACAACTCCGTGGAACTCTTTT
1 TTCAAAGCCCACAACTCCGTGGCACCTTTTTC-TTTTAAAGCCCACAACTCCGTGGCAC-CTTTT
1914888 TCCCTTTTAAAGCCCACAACTCCGTGGCACCTTTTTCTT
64 T-CCTTTTAAAGCCCACAACTCCGTGGCACCTTTTTCTT
* * * * * *
1914927 TTTAAAGCCCACAACTCTGTGGCACTCTTTTTCCTTTTTAAGTCCACAACTCCATGGCATCTTTC
1 TTCAAAGCCCACAACTCCGTGGCAC-CTTTTT-CTTTTAAAGCCCACAACTCCGTGGCACCTTT-
* *
1914992 TCCCTTCCTAAAGCCCACA
63 TTCCTT-TTAAAGCCCACA
1915011 CAAGTCGGTG
Statistics
Matches: 428, Mismatches: 45, Indels: 46
0.82 0.09 0.09
Matches are distributed among these distances:
95 3 0.01
96 6 0.01
97 39 0.09
99 1 0.00
100 57 0.13
101 3 0.01
102 9 0.02
103 21 0.05
104 73 0.17
105 114 0.27
106 44 0.10
107 33 0.08
108 25 0.06
ACGTcount: A:0.20, C:0.35, G:0.12, T:0.33
Consensus pattern (101 bp):
TTCAAAGCCCACAACTCCGTGGCACCTTTTTCTTTTAAAGCCCACAACTCCGTGGCACCTTTTTC
CTTTTAAAGCCCACAACTCCGTGGCACCTTTTTCTT
Found at i:1915038 original size:33 final size:33
Alignment explanation
Indices: 1914995--1915162 Score: 223
Period size: 33 Copynumber: 5.1 Consensus size: 33
1914985 ATCTTTCTCC
1914995 CTTCCTAAAGCCCACACAAGTCGGTGGCAACCTT
1 CTTCC-AAAGCCCACACAAGTCGGTGGCAACCTT
1915029 CTTCCAAAGCCCACACAAGTCGGTGGCAACCTT
1 CTTCCAAAGCCCACACAAGTCGGTGGCAACCTT
* * *
1915062 CTACCAAAGCCCACACAAGCCGGTGGCAACCCT
1 CTTCCAAAGCCCACACAAGTCGGTGGCAACCTT
* * *
1915095 C-TCTAAAGCCCACACAAGTTGGTGGCAACC-A
1 CTTCCAAAGCCCACACAAGTCGGTGGCAACCTT
* *
1915126 CTCTCTAAAACCCACACAAGTCGGTGGCAACCCTT
1 CT-TCCAAAGCCCACACAAGTCGGTGGCAA-CCTT
1915161 CT
1 CT
1915163 AAGCCCAATA
Statistics
Matches: 119, Mismatches: 11, Indels: 7
0.87 0.08 0.05
Matches are distributed among these distances:
31 1 0.01
32 25 0.21
33 84 0.71
34 7 0.06
35 2 0.02
ACGTcount: A:0.29, C:0.37, G:0.17, T:0.17
Consensus pattern (33 bp):
CTTCCAAAGCCCACACAAGTCGGTGGCAACCTT
Found at i:1915061 original size:141 final size:137
Alignment explanation
Indices: 1914414--1915043 Score: 515
Period size: 141 Copynumber: 4.6 Consensus size: 137
1914404 GCATTTTTTC
** * * *
1914414 TTCAAAGCCCACAACTCTGTGGCACCTTGTTCCTT-CT-AAGTCCACAACTCCGTGGCACCCTT-
1 TTCAAAGCCCACAACTCCATGGCACCTT-TTCCTTCCTAAAGCCCACAACTCCGTGGAACTCTTC
* * * * *
1914476 TT---AAAGCCCACAATTTCGTGGACAACCTTTTTCTTCTCAAAGCCCACCACTCCGTGGCA--C
65 TTCCCAAAGCCCACAACTCCGTGG-C-ACCTTTTTCTTTTTAAAGCCCACAACTCCGTGGCACTC
*
1914536 -TTTT-ACTT
128 TTTTTCCCTT
* * * ** *
1914544 TTTAATGCCCACAACTCCGTGGCACTCTTTTTCCCTTTTTAAAGCCCACAACTCCGTGGCACCTT
1 TTCAAAGCCCACAACTCCATGGCAC-C-TTTT-CCTTCCTAAAGCCCACAACTCCGTGG-AAC-T
* *** * * * * *
1914609 TTTCTTTTTAAAGCCCGCCACTCCGTGGCACC-TTTTCTTTTT-AAGTCCACGACCCCGTGGCAC
61 CTTCTTCCCAAAGCCCACAACTCCGTGGCACCTTTTTCTTTTTAAAGCCCACAACTCCGTGGCAC
*
1914672 -CTTGTT-CC-T
126 TCTTTTTCCCTT
* * ** * *
1914681 TTCAAAGCCCACAACTCCGTGGCACCTTTTTCTTTTTAAAGCCCACAACTCCGTGGCACTCTTTT
1 TTCAAAGCCCACAACTCCATGGCACCTTTTCCTTCCTAAAGCCCACAACTCCGTGGAACTCTTCT
1914746 TCCCTTTTCAAAGCCCACAACTCCGTGGCACCTTTTTCTTTTTAAAGCCCACAACTCCGTGGCAC
66 T-CC----CAAAGCCCACAACTCCGTGGCACCTTTTTCTTTTTAAAGCCCACAACTCCGTGGCAC
1914811 TCTTTTTCCCTT
126 TCTTTTTCCCTT
* * * * ** *
1914823 TTCAAAGCCCACATCTTCGTGGCACCTTTTTCTTTTTAAAGCCCACAACTCCGTGGAACTCTTTT
1 TTCAAAGCCCACAACTCCATGGCACCTTTTCCTTCCTAAAGCCCACAACTCCGTGGAACTCTTCT
*
1914888 TCCCTTTTAAAGCCCACAACTCCGTGGCACCTTTTTCTTTTTAAAGCCCACAACTCTGTGGCACT
66 TCCC----AAAGCCCACAACTCCGTGGCACCTTTTTCTTTTTAAAGCCCACAACTCCGTGGCACT
1914953 CTTTTT-CCTT
127 CTTTTTCCCTT
* * * * *
1914963 TT-TAAGTCCACAACTCCATGGCATCTTTCTCCCTTCCTAAAGCCCACACAAGTCGGTGGCAAC-
1 TTCAAAGCCCACAACTCCATGGCACCTTT-T-CCTTCCTAAAG-CC-CACAACTCCGTGG-AACT
1915026 CTTCTT-CCAAAGCCCACA
61 CTTCTTCCCAAAGCCCACA
1915044 CAAGTCGGTG
Statistics
Matches: 416, Mismatches: 52, Indels: 56
0.79 0.10 0.11
Matches are distributed among these distances:
130 22 0.05
131 3 0.01
132 11 0.03
133 2 0.00
134 42 0.10
135 5 0.01
136 20 0.05
137 57 0.14
138 27 0.06
139 39 0.09
140 27 0.06
141 74 0.18
142 68 0.16
143 16 0.04
144 3 0.01
ACGTcount: A:0.20, C:0.35, G:0.12, T:0.33
Consensus pattern (137 bp):
TTCAAAGCCCACAACTCCATGGCACCTTTTCCTTCCTAAAGCCCACAACTCCGTGGAACTCTTCT
TCCCAAAGCCCACAACTCCGTGGCACCTTTTTCTTTTTAAAGCCCACAACTCCGTGGCACTCTTT
TTCCCTT
Found at i:1915124 original size:65 final size:65
Alignment explanation
Indices: 1915001--1915169 Score: 236
Period size: 65 Copynumber: 2.6 Consensus size: 65
1914991 CTCCCTTCCT
* * *
1915001 AAAGCCCACACAAGTCGGTGGCAACCTTCTTCCAAAGCCCACACAAGTCGGTGGCAACC-TTCTA
1 AAAGCCCACACAAGTCGGTGGCAACCCTC-TCTAAAGCCCACACAAGTCGGTGGCAACCACTCT-
1915065 CC
64 CC
* * *
1915067 AAAGCCCACACAAGCCGGTGGCAACCCTCTCTAAAGCCCACACAAGTTGGTGGCAACCACTCTCT
1 AAAGCCCACACAAGTCGGTGGCAACCCTCTCTAAAGCCCACACAAGTCGGTGGCAACCACTCTCC
*
1915132 AAAACCCACACAAGTCGGTGGCAACCCT-TCT-AAGCCCA
1 AAAGCCCACACAAGTCGGTGGCAACCCTCTCTAAAGCCCA
1915170 ATATAGTTGG
Statistics
Matches: 94, Mismatches: 8, Indels: 5
0.88 0.07 0.05
Matches are distributed among these distances:
63 7 0.07
64 3 0.03
65 54 0.57
66 30 0.32
ACGTcount: A:0.30, C:0.37, G:0.18, T:0.15
Consensus pattern (65 bp):
AAAGCCCACACAAGTCGGTGGCAACCCTCTCTAAAGCCCACACAAGTCGGTGGCAACCACTCTCC
Found at i:1915230 original size:49 final size:48
Alignment explanation
Indices: 1915162--1916205 Score: 775
Period size: 49 Copynumber: 21.8 Consensus size: 48
1915152 GCAACCCTTC
* * * *
1915162 TAAGCCCAATATAGTTGGCCTTGAATCAGCATATTGGCACCTTCTTCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTC-TCTT
* *
1915211 TAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCA----C-CAT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCTCTT
* * * *
1915254 TAAGTCCAATATAGTTGGCCTTGAATCAGCATATTGGCACCTTTATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACC-TTCTCTT
*
1915303 TAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTC-TCTT
* *
1915352 TAAGTCCAATGTAGCTAGCCTTGAATCAGCACATTGGCACC-TCACCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTC-TCTT
*
1915400 TAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCA----C-CTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCTCTT
* * * *
1915443 TAAGTCCAATATAGTTGGCCTTGAATCAGCATATTGGCACCTTTATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACC-TTCTCTT
*
1915492 TAAGTCCAATGTATCTGGCCTTGAATCAGCACATTGGCA----C-CTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCTCTT
* * * * * *
1915535 TAAGTCTAATATCGCTGGCCTTGAATCAGCATATCGGCATCTTCATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTC-TCTT
1915584 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA----C-CTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCTCTT
* * * * *
1915627 TAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTC-TCTT
1915676 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA----C-CTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCTCTT
** * *
1915719 TAAGTCCAACATAGCTGGCCTTGAATCAGCATATTGGCACATTTTCCATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCAC--CTT-C-TCTT
* *
1915771 TAAGTTCAATGTAGCTGGCCTTGAATCAGCACATTGACATCCTTTTCTCATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA-CC---T-TC-TCTT
* * * * * * * * * *
1915825 TAAGCCCAATATCGTTGGCCATGAATGAACATATTGGCATCTTTATCACTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA-C-CT-TCTCTT
** * **** * * * * * *
1915876 T-TCTCATCATCATCTTTAAGTCCAAT-ATTGCTGGC-C-TTGAATCAGCACATTGGCACCTT
1 TAAGTC--CA--ATGTAGCTGGCC-TTGAAT-C-AGCACATTG-----GCACCTT--C-TCTT
* * * *
1915935 TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTC-TCTT
*
1915984 TAAGTCCAAT-TAGCTGGCCTTGAATCAGCACATTGGCA----C-CAT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCTCTT
* * * * *
1916026 TAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTC-TCTT
1916075 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA----C-CTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCTCTT
* *
1916118 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTTCCATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACC--TT-C-TCTT
* *
1916170 TAAGTTCAATGTAGTTGGCCTTGAATCAGCACATTG
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTG
1916206 ACATTCTTTT
Statistics
Matches: 799, Mismatches: 121, Indels: 147
0.75 0.11 0.14
Matches are distributed among these distances:
42 11 0.01
43 254 0.32
44 1 0.00
45 5 0.01
47 3 0.00
48 71 0.09
49 281 0.35
50 3 0.00
51 9 0.01
52 77 0.10
53 1 0.00
54 51 0.06
55 5 0.01
56 13 0.02
57 1 0.00
58 4 0.01
59 7 0.01
60 2 0.00
ACGTcount: A:0.25, C:0.25, G:0.17, T:0.32
Consensus pattern (48 bp):
TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCTCTT
Found at i:1915324 original size:92 final size:92
Alignment explanation
Indices: 1915157--1915815 Score: 953
Period size: 92 Copynumber: 7.1 Consensus size: 92
1915147 CGGTGGCAAC
* *
1915157 CCTTCTAAGCCCAATATAGTTGGCCTTGAATCAGCATATTGGCACCTTCT-TCTTTAAGTCCAAT
1 CCTT-TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTT-TATCTTTAAGTCCAAT
*
1915221 GTAGCTGGCCTTGACTCAGCACATTGGCA
64 GTAGCTGGCCTTGAATCAGCACATTGGCA
* *
1915250 CCATTAAGTCCAATATAGTTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGTCCAATGT
1 CCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGTCCAATGT
*
1915315 AGCTGGCCTTGACTCAGCACATTGGCA
66 AGCTGGCCTTGAATCAGCACATTGGCA
* * * * *
1915342 CCTTCATCTTTAAGTCCAATGTAGCTAGCCTTGAATCAGCACATTGGCACC-TCACCTTTAAGTC
1 ----C--CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGTC
*
1915406 CAATGTAGCTGGCCTTGACTCAGCACATTGGCA
60 CAATGTAGCTGGCCTTGAATCAGCACATTGGCA
*
1915439 CCTTTAAGTCCAATATAGTTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGTCCAATGT
1 CCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGTCCAATGT
*
1915504 ATCTGGCCTTGAATCAGCACATTGGCA
66 AGCTGGCCTTGAATCAGCACATTGGCA
* * * * *
1915531 CCTTTAAGTCTAATATCGCTGGCCTTGAATCAGCATATCGGCATCTTCATCTTTAAGTCCAATGT
1 CCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGTCCAATGT
1915596 AGCTGGCCTTGAATCAGCACATTGGCA
66 AGCTGGCCTTGAATCAGCACATTGGCA
* * * *
1915623 CCTTTAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGT
1 CCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGTCCAATGT
1915688 AGCTGGCCTTGAATCAGCACATTGGCA
66 AGCTGGCCTTGAATCAGCACATTGGCA
* * *
1915715 CCTTTAAGTCCAACATAGCTGGCCTTGAATCAGCATATTGGCACATTTTCCATCTTTAAGTTCAA
1 CCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCAC-CTTT--ATCTTTAAGTCCAA
*
1915780 TGTAGCTGGCCTTGAATCAGCACATTGACA
63 TGTAGCTGGCCTTGAATCAGCACATTGGCA
1915810 TCCTTT
1 -CCTTT
1915816 TCTCATCTTT
Statistics
Matches: 519, Mismatches: 35, Indels: 21
0.90 0.06 0.04
Matches are distributed among these distances:
91 41 0.08
92 341 0.66
93 6 0.01
95 42 0.08
96 6 0.01
97 44 0.08
98 39 0.08
ACGTcount: A:0.25, C:0.25, G:0.18, T:0.32
Consensus pattern (92 bp):
CCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGTCCAATGT
AGCTGGCCTTGAATCAGCACATTGGCA
Found at i:1915786 original size:52 final size:54
Alignment explanation
Indices: 1915716--1916232 Score: 205
Period size: 43 Copynumber: 10.2 Consensus size: 54
1915706 ACATTGGCAC
* *
1915716 CTTTAAGTCCAACATAGCTGGCCTTGAATCAGCATATTGGCA-CATTTTC-CAT
1 CTTTAAGTCCAACATAGCTGGCCTTGAATCAGCACATTGACATCATTTTCTCAT
* ** *
1915768 CTTTAAGTTCAATGTAGCTGGCCTTGAATCAGCACATTGACATCCTTTTCTCAT
1 CTTTAAGTCCAACATAGCTGGCCTTGAATCAGCACATTGACATCATTTTCTCAT
* * * * * * * *
1915822 CTTTAAGCCCAATATCGTTGGCCATGAATGAACATATTGGCATCTTTATCACTTTTCTCATCATC
1 CTTTAAGTCCAACATAGCTGGCCTTGAATCAGCACATT-G-A-C---ATCA---TT-T--TC-TC
1915887 AT
53 AT
* * *
1915889 CTTTAAGTCCAATATTGCTGGCCTTGAATCAGCACATTG---GCA------C--
1 CTTTAAGTCCAACATAGCTGGCCTTGAATCAGCACATTGACATCATTTTCTCAT
* * * *
1915932 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATC----T-TCAT
1 CTTTAAGTCCAACATAGCTGGCCTTGAATCAGCACATTGACATCATTTTCTCAT
* *
1915981 CTTTAAGTCCAA-TTAGCTGGCCTTGAATCAGCACATTG---GCA----C-CA-
1 CTTTAAGTCCAACATAGCTGGCCTTGAATCAGCACATTGACATCATTTTCTCAT
* * * * *
1916025 --TTAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCATC----T-TCAT
1 CTTTAAGTCCAACATAGCTGGCCTTGAATCAGCACATTGACATCATTTTCTCAT
** *
1916072 CTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTG---GCA------C--
1 CTTTAAGTCCAACATAGCTGGCCTTGAATCAGCACATTGACATCATTTTCTCAT
* * * *
1916115 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA-CCTTTTC-CAT
1 CTTTAAGTCCAACATAGCTGGCCTTGAATCAGCACATTGACATCATTTTCTCAT
* ** *
1916167 CTTTAAGTTCAATGTAGTTGGCCTTGAATCAGCACATTGACATTC-TTTTCTCAT
1 CTTTAAGTCCAACATAGCTGGCCTTGAATCAGCACATTGACA-TCATTTTCTCAT
*
1916221 CTTTAAGCCCAA
1 CTTTAAGTCCAA
1916233 TATCATTGGC
Statistics
Matches: 367, Mismatches: 51, Indels: 92
0.72 0.10 0.18
Matches are distributed among these distances:
42 9 0.02
43 97 0.26
45 6 0.02
46 5 0.01
47 1 0.00
48 23 0.06
49 45 0.12
50 1 0.00
52 74 0.20
53 11 0.03
54 46 0.13
55 1 0.00
56 1 0.00
57 1 0.00
58 2 0.01
60 3 0.01
63 2 0.01
64 1 0.00
66 3 0.01
67 35 0.10
ACGTcount: A:0.26, C:0.25, G:0.16, T:0.34
Consensus pattern (54 bp):
CTTTAAGTCCAACATAGCTGGCCTTGAATCAGCACATTGACATCATTTTCTCAT
Found at i:1915850 original size:54 final size:52
Alignment explanation
Indices: 1915716--1915850 Score: 162
Period size: 52 Copynumber: 2.6 Consensus size: 52
1915706 ACATTGGCAC
* * *
1915716 CTTTAAGTCCAACATAGCTGGCCTTGAATCAGCATATTGGCACATTTTCCAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGACACATTTTCCAT
* * *
1915768 CTTTAAGTTCAATGTAGCTGGCCTTGAATCAGCACATTGACATCCTTTTCTCAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGACA-CATTTTC-CAT
* * * *
1915822 CTTTAAGCCCAATATCGTTGGCCATGAAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAAT
1915851 GAACATATTG
Statistics
Matches: 69, Mismatches: 12, Indels: 2
0.83 0.14 0.02
Matches are distributed among these distances:
52 37 0.54
53 6 0.09
54 26 0.38
ACGTcount: A:0.26, C:0.24, G:0.16, T:0.34
Consensus pattern (52 bp):
CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGACACATTTTCCAT
Found at i:1915937 original size:43 final size:43
Alignment explanation
Indices: 1915889--1916161 Score: 350
Period size: 43 Copynumber: 6.1 Consensus size: 43
1915879 TCATCATCAT
*
1915889 CTTTAAGTCCAATATTGCTGGCCTTGAATCAGCACATTGGCAC
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCAC
* *
1915932 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTC
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCA----C
1915979 ATCTTTAAGTCCAAT-TAGCTGGCCTTGAATCAGCACATTGGCAC
1 --CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCAC
* * * *
1916023 CATTAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTC
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCA----C
*
1916070 ATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCAC
1 --CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCAC
*
1916115 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCAC
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCAC
1916158 CTTT
1 CTTT
1916162 TCCATCTTTA
Statistics
Matches: 202, Mismatches: 15, Indels: 26
0.83 0.06 0.11
Matches are distributed among these distances:
42 11 0.05
43 111 0.55
44 1 0.00
45 1 0.00
47 2 0.01
48 26 0.13
49 50 0.25
ACGTcount: A:0.26, C:0.25, G:0.18, T:0.31
Consensus pattern (43 bp):
CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCAC
Found at i:1916142 original size:92 final size:92
Alignment explanation
Indices: 1915880--1916205 Score: 537
Period size: 92 Copynumber: 3.5 Consensus size: 92
1915870 TCACTTTTCT
* * *
1915880 CATCATCATCTTTAAGTCCAATATTGCTGGCCTTGAATCAGCACATTGGCACCTTTAAGTCCAAT
1 CATCTTCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTTAAGTCCAAT
1915945 ATCGCTGGCCTTGAATCAGCATATTGG
66 ATCGCTGGCCTTGAATCAGCATATTGG
* *
1915972 CATCTTCATCTTTAAGTCCAAT-TAGCTGGCCTTGAATCAGCACATTGGCACCATTAAGCCCAAT
1 CATCTTCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTTAAGTCCAAT
1916036 ATCGCTGGCCTTGAATCAGCATATTGG
66 ATCGCTGGCCTTGAATCAGCATATTGG
1916063 CATCTTCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTTAAGTCCAAT
1 CATCTTCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTTAAGTCCAAT
*
1916128 ATAGCTGGCCTTGAATCAGCATATTGG
66 ATCGCTGGCCTTGAATCAGCATATTGG
* * *
1916155 CACCTTTTCCATCTTTAAGTTCAATGTAGTTGGCCTTGAATCAGCACATTG
1 CA--TCTT-CATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTG
1916206 ACATTCTTTT
Statistics
Matches: 220, Mismatches: 10, Indels: 5
0.94 0.04 0.02
Matches are distributed among these distances:
91 88 0.40
92 89 0.40
94 3 0.01
95 40 0.18
ACGTcount: A:0.26, C:0.25, G:0.17, T:0.32
Consensus pattern (92 bp):
CATCTTCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTTAAGTCCAAT
ATCGCTGGCCTTGAATCAGCATATTGG
Found at i:1916226 original size:399 final size:400
Alignment explanation
Indices: 1915487--1916333 Score: 1572
Period size: 399 Copynumber: 2.1 Consensus size: 400
1915477 TGGCACCTTT
* *
1915487 ATCTTTAAGTCCAATGTAT-CTGGCCTTGAATCAGCACATTGGCACCTTTAAGTCTAATATCGCT
1 ATCTTTAAGTCCAATAT-TGCTGGCCTTGAATCAGCACATTGGCACCTTTAAGTCCAATATCGCT
1915551 GGCCTTGAATCAGCATATCGGCATCTTCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCAC
65 GGCCTTGAATCAGCATATCGGCATCTTCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCAC
*
1915616 ATTGGCACCTTTAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGT
130 ATTGGCACCATTAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGT
1915681 CCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTTAAGTCCAACATAGCTGGCCTTGAATC
195 CCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTTAAGTCCAACATAGCTGGCCTTGAATC
1915746 AGCATATTGGCACATTTTCCATCTTTAAGTTCAATGTAGCTGGCCTTGAATCAGCACATTGACAT
260 AGCATATTGGCACATTTTCCATCTTTAAGTTCAATGTAGCTGGCCTTGAATCAGCACATTGACAT
* *
1915811 CCTTTTCTCATCTTTAAGCCCAATATCGTTGGCCATGAATGAACATATTGGCATCTTTATCACTT
325 CCTTTTCTCATCTTTAAGCCCAATATCATTGGCCATGAATGAACATATTGGCATCTTTACCACTT
1915876 TTCTCATCATC
390 TTCTCATCATC
1915887 ATCTTTAAGTCCAATATTGCTGGCCTTGAATCAGCACATTGGCACCTTTAAGTCCAATATCGCTG
1 ATCTTTAAGTCCAATATTGCTGGCCTTGAATCAGCACATTGGCACCTTTAAGTCCAATATCGCTG
*
1915952 GCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAAT-TAGCTGGCCTTGAATCAGCACA
66 GCCTTGAATCAGCATATCGGCATCTTCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACA
1916016 TTGGCACCATTAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTC
131 TTGGCACCATTAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTC
*
1916081 CAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTTAAGTCCAATATAGCTGGCCTTGAATCA
196 CAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTTAAGTCCAACATAGCTGGCCTTGAATCA
* * *
1916146 GCATATTGGCACCTTTTCCATCTTTAAGTTCAATGTAGTTGGCCTTGAATCAGCACATTGACATT
261 GCATATTGGCACATTTTCCATCTTTAAGTTCAATGTAGCTGGCCTTGAATCAGCACATTGACATC
1916211 CTTTTCTCATCTTTAAGCCCAATATCATTGGCCATGAATGAACATATTGGCATCTTTACCACTTT
326 CTTTTCTCATCTTTAAGCCCAATATCATTGGCCATGAATGAACATATTGGCATCTTTACCACTTT
1916276 TCTCATCATC
391 TCTCATCATC
*
1916286 ATCTTTAAGTCCAATATTGCTGGCCTTGAATCAGCATATTGGCACCTT
1 ATCTTTAAGTCCAATATTGCTGGCCTTGAATCAGCACATTGGCACCTT
1916334 CATCATCTCT
Statistics
Matches: 435, Mismatches: 11, Indels: 3
0.97 0.02 0.01
Matches are distributed among these distances:
399 333 0.77
400 102 0.23
ACGTcount: A:0.26, C:0.25, G:0.16, T:0.33
Consensus pattern (400 bp):
ATCTTTAAGTCCAATATTGCTGGCCTTGAATCAGCACATTGGCACCTTTAAGTCCAATATCGCTG
GCCTTGAATCAGCATATCGGCATCTTCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACA
TTGGCACCATTAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTC
CAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTTAAGTCCAACATAGCTGGCCTTGAATCA
GCATATTGGCACATTTTCCATCTTTAAGTTCAATGTAGCTGGCCTTGAATCAGCACATTGACATC
CTTTTCTCATCTTTAAGCCCAATATCATTGGCCATGAATGAACATATTGGCATCTTTACCACTTT
TCTCATCATC
Found at i:1916242 original size:54 final size:52
Alignment explanation
Indices: 1916115--1916249 Score: 164
Period size: 52 Copynumber: 2.6 Consensus size: 52
1916105 ACATTGGCAC
* * *
1916115 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTTCCAT
1 CTTTAAGTCCAATATAGTTGGCCTTGAATCAGCACATTGACACCTTTTCCAT
* * *
1916167 CTTTAAGTTCAATGTAGTTGGCCTTGAATCAGCACATTGACATTCTTTTCTCAT
1 CTTTAAGTCCAATATAGTTGGCCTTGAATCAGCACATTGACA-CCTTTTC-CAT
* *
1916221 CTTTAAGCCCAATATCA-TTGGCCATGAAT
1 CTTTAAGTCCAATAT-AGTTGGCCTTGAAT
1916250 GAACATATTG
Statistics
Matches: 70, Mismatches: 10, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
52 37 0.53
53 6 0.09
54 26 0.37
55 1 0.01
ACGTcount: A:0.26, C:0.23, G:0.15, T:0.36
Consensus pattern (52 bp):
CTTTAAGTCCAATATAGTTGGCCTTGAATCAGCACATTGACACCTTTTCCAT
Found at i:1917153 original size:13 final size:13
Alignment explanation
Indices: 1917135--1917159 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1917125 CATAAAGTGT
1917135 TGTATCGATACAA
1 TGTATCGATACAA
1917148 TGTATCGATACA
1 TGTATCGATACA
1917160 TATTTTTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:1917157 original size:33 final size:33
Alignment explanation
Indices: 1917115--1917181 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
1917105 TTCAACGATT
1917115 TGTATCGATACATAAAGTGTTGTATCGATACAA
1 TGTATCGATACATAAAGTGTTGTATCGATACAA
*** *
1917148 TGTATCGATACATATTTTTTTGTATCGATACAA
1 TGTATCGATACATAAAGTGTTGTATCGATACAA
1917181 T
1 T
1917182 TTAAGCTACT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.33, C:0.12, G:0.15, T:0.40
Consensus pattern (33 bp):
TGTATCGATACATAAAGTGTTGTATCGATACAA
Found at i:1917383 original size:52 final size:52
Alignment explanation
Indices: 1917255--1917372 Score: 218
Period size: 52 Copynumber: 2.3 Consensus size: 52
1917245 CACCGATCTT
*
1917255 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACATTATAAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
*
1917307 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATTAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
1917359 TGTATCGATACATG
1 TGTATCGATACATG
1917373 TAGATAAATT
Statistics
Matches: 64, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
52 64 1.00
ACGTcount: A:0.35, C:0.18, G:0.18, T:0.30
Consensus pattern (52 bp):
TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
Found at i:1921187 original size:174 final size:175
Alignment explanation
Indices: 1920896--1921245 Score: 621
Period size: 174 Copynumber: 2.0 Consensus size: 175
1920886 TTTTTATCAT
1920896 GGACATGTAGGTGATAATGCATGAGCATTTTTCATATTACGCGTCCTTTTTCTTTGATGGGGCAT
1 GGACATGTAGGTGATAATGCATGAGCATTTTTCATATTACGCGTCCTTTTTCTTTGATGGGGCAT
*
1920961 GCTGTTATGCTGTCCGATTGAGGGCTAACCTCCTGTCAACAAATGGGAGATGGTAAGCAAATGCT
66 GCTGTTATGCTGTCCAATTGAGGGCTAACCTCCTGTCAACAAATGGGAGATGGTAAGCAAATGCT
*
1921026 ATCGCCATAGTGCCCATGTCTTCAATAAGTCGTCATGCTATCCAA
131 ATCGCCACAGTGCCCATGTCTTCAATAAGTCGTCATGCTATCCAA
* *
1921071 GGACATGTAGGTGATAATGCATGAGCA-TTTTCATATTACGCTTCCTTTTTCTTTGATGGGGCTT
1 GGACATGTAGGTGATAATGCATGAGCATTTTTCATATTACGCGTCCTTTTTCTTTGATGGGGCAT
* *
1921135 GCTGTTATGCTGTCCAATTGATGGCTAACCTCCTGTTAACAAATGGGAGATGGTAAGCAAATGCT
66 GCTGTTATGCTGTCCAATTGAGGGCTAACCTCCTGTCAACAAATGGGAGATGGTAAGCAAATGCT
* *
1921200 ATTGCCACCGTGCCCATGTCTTCAATAAGTCGTCATGCTATCCAA
131 ATCGCCACAGTGCCCATGTCTTCAATAAGTCGTCATGCTATCCAA
1921245 G
1 G
1921246 TCCTAGCTTG
Statistics
Matches: 167, Mismatches: 8, Indels: 1
0.95 0.05 0.01
Matches are distributed among these distances:
174 140 0.84
175 27 0.16
ACGTcount: A:0.24, C:0.21, G:0.23, T:0.32
Consensus pattern (175 bp):
GGACATGTAGGTGATAATGCATGAGCATTTTTCATATTACGCGTCCTTTTTCTTTGATGGGGCAT
GCTGTTATGCTGTCCAATTGAGGGCTAACCTCCTGTCAACAAATGGGAGATGGTAAGCAAATGCT
ATCGCCACAGTGCCCATGTCTTCAATAAGTCGTCATGCTATCCAA
Found at i:1923433 original size:6 final size:6
Alignment explanation
Indices: 1923422--1923471 Score: 61
Period size: 6 Copynumber: 8.7 Consensus size: 6
1923412 GCTCACCTAA
*
1923422 AAAAAC AAAAAC AAAAAC AAAAAA AACAAAC -AAAA- AAAAAC -AAAAC
1 AAAAAC AAAAAC AAAAAC AAAAAC AA-AAAC AAAAAC AAAAAC AAAAAC
1923468 AAAA
1 AAAA
1923472 GAAGGAAAAA
Statistics
Matches: 38, Mismatches: 2, Indels: 8
0.79 0.04 0.17
Matches are distributed among these distances:
5 12 0.32
6 23 0.61
7 3 0.08
ACGTcount: A:0.86, C:0.14, G:0.00, T:0.00
Consensus pattern (6 bp):
AAAAAC
Found at i:1923445 original size:14 final size:13
Alignment explanation
Indices: 1923420--1923471 Score: 61
Period size: 14 Copynumber: 3.9 Consensus size: 13
1923410 AGGCTCACCT
1923420 AAAAAAAC-AAAA
1 AAAAAAACAAAAA
*
1923432 ACAAAAACAAAAA
1 AAAAAAACAAAAA
*
1923445 AAACAAACAAAAAA
1 AAAAAAAC-AAAAA
1923459 AAACAAAACAAAA
1 AAA-AAAACAAAA
1923472 GAAGGAAAAA
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
12 7 0.21
13 10 0.30
14 12 0.36
15 4 0.12
ACGTcount: A:0.87, C:0.13, G:0.00, T:0.00
Consensus pattern (13 bp):
AAAAAAACAAAAA
Found at i:1923445 original size:19 final size:18
Alignment explanation
Indices: 1923420--1923470 Score: 68
Period size: 19 Copynumber: 2.8 Consensus size: 18
1923410 AGGCTCACCT
*
1923420 AAAAAAACAA-AAACAAA
1 AAAAAAAAAACAAACAAA
1923437 AACAAAAAAAACAAACAAA
1 AA-AAAAAAAACAAACAAA
1923456 AAAAAACAAAACAAA
1 AAAAAA-AAAACAAA
1923471 AGAAGGAAAA
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
17 2 0.07
18 11 0.37
19 17 0.57
ACGTcount: A:0.86, C:0.14, G:0.00, T:0.00
Consensus pattern (18 bp):
AAAAAAAAAACAAACAAA
Found at i:1923446 original size:15 final size:15
Alignment explanation
Indices: 1923428--1923471 Score: 65
Period size: 14 Copynumber: 3.1 Consensus size: 15
1923418 CTAAAAAAAC
1923428 AAAAACAAAAACAAA
1 AAAAACAAAAACAAA
*
1923443 AAAAACAAACA-AAA
1 AAAAACAAAAACAAA
1923457 AAAAAC-AAAACAAA
1 AAAAACAAAAACAAA
1923471 A
1 A
1923472 GAAGGAAAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
13 3 0.12
14 13 0.50
15 10 0.38
ACGTcount: A:0.86, C:0.14, G:0.00, T:0.00
Consensus pattern (15 bp):
AAAAACAAAAACAAA
Found at i:1924520 original size:30 final size:30
Alignment explanation
Indices: 1924419--1924596 Score: 243
Period size: 30 Copynumber: 5.8 Consensus size: 30
1924409 TCAAATCTCT
* *
1924419 TCTCAAAGCCCACGACTCAGTGGCAATCTCT-
1 TCTCAAAGTCCACGACTCAGTGGC-AT-TTTG
*
1924450 TCTCCAAGTCCACGACTCAGTGGCATCCTTT-
1 TCTCAAAGTCCACGACTCAGTGGCAT--TTTG
*
1924481 TCTTCAAAGTCCATGACTCAGTGGCATTTTG
1 TC-TCAAAGTCCACGACTCAGTGGCATTTTG
1924512 TCTCAAAGTCCACGACTCAGTGGCATTTTG
1 TCTCAAAGTCCACGACTCAGTGGCATTTTG
1924542 TCTCAAAGTCCACGACTCAGTGGCATTTTG
1 TCTCAAAGTCCACGACTCAGTGGCATTTTG
* *
1924572 TCTCAAAGTCCATGACTCAGGGGCA
1 TCTCAAAGTCCACGACTCAGTGGCA
1924597 CCTTGTTCCT
Statistics
Matches: 136, Mismatches: 8, Indels: 7
0.90 0.05 0.05
Matches are distributed among these distances:
30 85 0.62
31 29 0.21
32 22 0.16
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.28
Consensus pattern (30 bp):
TCTCAAAGTCCACGACTCAGTGGCATTTTG
Found at i:1924723 original size:68 final size:67
Alignment explanation
Indices: 1924631--1925060 Score: 412
Period size: 68 Copynumber: 6.2 Consensus size: 67
1924621 TCCATGGCAC
* * *
1924631 CCTTTTAAAGCCCACAA-TTCCGTGGTAACCTTTTTCTTCTCAAAGCCCACCACTCCGTGGCA-C
1 CCTTTTAAAGCCCACAACTT-CGTGG-CACCTTTTTCTT-TTAAAGCCCACAACTCCGTGGCACC
1924694 TTTTT
63 TTTTT
1924699 CCTTTTAAAGCCCACAACTTCGTGGCACTCTTTTTCCCTTTTCAAAGCCCACAACTCCGTGGCAC
1 CCTTTTAAAGCCCACAACTTCGTGGCAC-CTTTTT--CTTTT-AAAGCCCACAACTCCGTGGCAC
1924764 CTTTTT
62 CTTTTT
* * * * * * **
1924770 CTTTTTAAA-CCCACCAC-TCTGTGGCACC-TTTTCTTTTTAAGTCCACGACCCCAAGGCACCTT
1 CCTTTTAAAGCCCACAACTTC-GTGGCACCTTTTTCTTTTAAAGCCCACAACTCCGTGGCACCTT
*
1924832 GTT
65 TTT
* *
1924835 CCTTTCAAAGCCCACAAC-TCTGTGGCACCTTTTTCTTTTTAAAGCCCACAACTCTGTGGCACTC
1 CCTTTTAAAGCCCACAACTTC-GTGGCACCTTTTTC-TTTTAAAGCCCACAACTCCGTGGCAC-C
1924899 TTTTT
63 TTTTT
*
1924904 CGCTTTTCAAAGCCCACAACTCCGTGGCA-CTTTTT-TTTTAAAGCCCACAACTCCGTGGCACTC
1 C-CTTTT-AAAGCCCACAACTTCGTGGCACCTTTTTCTTTTAAAGCCCACAACTCCGTGGCAC-C
1924967 TTTTT
63 TTTTT
* *
1924972 CCCTTTTCAAAGCCCACAAC-TCTGTGGCACGCTTTTTCCCTTTT-AAGTCCACAACTCCATGGC
1 -CCTTTT-AAAGCCCACAACTTC-GTGGCAC-CTTTTT--CTTTTAAAGCCCACAACTCCGTGGC
* *
1925035 ATCTTTCTC
60 ACCTTT-TT
*
1925044 CCTTCCTAAAGCCCACA
1 CCTT-TTAAAGCCCACA
1925061 CAAGTCGGTG
Statistics
Matches: 307, Mismatches: 32, Indels: 43
0.80 0.08 0.11
Matches are distributed among these distances:
65 28 0.09
66 23 0.07
67 8 0.03
68 107 0.35
69 13 0.04
70 53 0.17
71 50 0.16
72 21 0.07
73 4 0.01
ACGTcount: A:0.20, C:0.34, G:0.12, T:0.33
Consensus pattern (67 bp):
CCTTTTAAAGCCCACAACTTCGTGGCACCTTTTTCTTTTAAAGCCCACAACTCCGTGGCACCTTT
TT
Found at i:1925088 original size:33 final size:32
Alignment explanation
Indices: 1925049--1925186 Score: 181
Period size: 33 Copynumber: 4.3 Consensus size: 32
1925039 TTCTCCCTTC
*
1925049 CTAAAGCCCACACAAGTCGGTGGCAACCTTCT
1 CTAAAGCCCACACAAGTCGGTGGCAACCCTCT
* * *
1925081 ACCAAAGCCCACACAAGCCGATGGCAACCCTCT
1 -CTAAAGCCCACACAAGTCGGTGGCAACCCTCT
*
1925114 CTAAAGCCCACACAAGTTGGTGGCAACCACTCT
1 CTAAAGCCCACACAAGTCGGTGGCAACC-CTCT
* *
1925147 CTAAAACCCATACAAGTCGGTGGCAACCCT-T
1 CTAAAGCCCACACAAGTCGGTGGCAACCCTCT
1925178 CT-AAGCCCA
1 CTAAAGCCCA
1925187 ATATAGCTGG
Statistics
Matches: 92, Mismatches: 12, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
30 6 0.07
31 3 0.03
32 26 0.28
33 57 0.62
ACGTcount: A:0.31, C:0.36, G:0.17, T:0.16
Consensus pattern (32 bp):
CTAAAGCCCACACAAGTCGGTGGCAACCCTCT
Found at i:1925130 original size:65 final size:64
Alignment explanation
Indices: 1925043--1925186 Score: 184
Period size: 65 Copynumber: 2.2 Consensus size: 64
1925033 GCATCTTTCT
* *
1925043 CCCTTCCTAAAGCCCACACAAGTCGGTGGCAACC-TTCTACCAAAGCCCACACAAGCCGATGGCA
1 CCCTT-CTAAAGCCCACACAAGTCGGTGGCAACCACTCT-CCAAAACCCACACAAGCCGATGGCA
1925107 A
64 A
* * * * *
1925108 CCCTCTCTAAAGCCCACACAAGTTGGTGGCAACCACTCTCTAAAACCCATACAAGTCGGTGGCAA
1 CCCT-TCTAAAGCCCACACAAGTCGGTGGCAACCACTCTCCAAAACCCACACAAGCCGATGGCAA
1925173 CCCTTCT-AAGCCCA
1 CCCTTCTAAAGCCCA
1925187 ATATAGCTGG
Statistics
Matches: 70, Mismatches: 7, Indels: 6
0.84 0.08 0.07
Matches are distributed among these distances:
63 7 0.10
64 3 0.04
65 56 0.80
66 4 0.06
ACGTcount: A:0.30, C:0.38, G:0.16, T:0.17
Consensus pattern (64 bp):
CCCTTCTAAAGCCCACACAAGTCGGTGGCAACCACTCTCCAAAACCCACACAAGCCGATGGCAA
Found at i:1925244 original size:49 final size:48
Alignment explanation
Indices: 1925179--1926407 Score: 1001
Period size: 49 Copynumber: 25.8 Consensus size: 48
1925169 GCAACCCTTC
* * *
1925179 TAAGCCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTC-TCTT
* * *
1925228 TAAGTCCAACGTAGCTGGCCTTGACTCAGCACATTGGCA----C-CAT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCTCTT
* * *
1925271 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACC-TTCTCTT
* * *
1925320 TAAGTCCAATGTAGCTAGCCTTGACTCAGCACATTGGCACCTTCATCTG
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTC-TCTT
* *
1925369 TAAGTCCAATGTAGCTAGCCTTGAATCAGCACATTGGCACC-TCACCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTC-TCTT
* *
1925417 TAAGTCCAATGTATCTGGCCTTGACTCAGCACATTGGCA----C-CTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCTCTT
* * *
1925460 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACC-TTCTCTT
1925509 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA----C-CTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCTCTT
* * * * *
1925552 TAAGTCCAATATCGCTGGCCTTAAATCAGCATATTGGCATCTTCATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTC-TCTT
1925601 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA----C-CTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCTCTT
* * * * *
1925644 TAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTC-TCTT
1925693 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA----C-CTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCTCTT
* *
1925736 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTTCCATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACC--TT-C-TCTT
* *
1925788 TAAGTTCAATGTAGCTGGCCTTGAATCAGCACATTGACATCCTTTTCTCATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA-CC---T-TC-TCTT
* * * * * * * * * *
1925842 TAAGCCCAATATCGTTGGCCATGAATGAACATATTGGCATCTTTATCACTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA-C-CT-TCTCTT
** * **** * * * * * *
1925893 T-TCTCATCATCATCTTTAAGTCCAAT-ATTGCTGGC-C-TTGACTCAACACATTGGCACCTT
1 TAAGTC--CA--ATGTAGCTGGCC-TTGAAT-C-AGCACATTG--GC-AC-C-TT--C-TCTT
* * * *
1925952 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGAACCTTTATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACC-TTCTCTT
1926001 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA----C-CTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCTCTT
* * * *
1926044 TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTC-TCTT
1926093 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA----C-CTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCTCTT
* * * * * * *
1926136 TAAGCCCAATATCGCTAGCCTTGAATTAGCATATTGGCATCTTCATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTC-TCTT
1926185 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA----C-CTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCTCTT
* * * * *
1926228 TAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTC-TCTT
1926277 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA----C-CTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCTCTT
* *
1926320 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTTCCATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACC--TT-C-TCTT
* *
1926372 TAAGTTCAATGTAGTTGGCCTTGAATCAGCACATTG
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTG
1926408 ACATCCTTTT
Statistics
Matches: 959, Mismatches: 138, Indels: 163
0.76 0.11 0.13
Matches are distributed among these distances:
43 344 0.36
45 7 0.01
47 5 0.01
48 43 0.04
49 384 0.40
50 3 0.00
51 4 0.00
52 81 0.08
53 4 0.00
54 53 0.06
55 5 0.01
56 15 0.02
57 2 0.00
58 3 0.00
59 4 0.00
60 2 0.00
ACGTcount: A:0.26, C:0.25, G:0.17, T:0.32
Consensus pattern (48 bp):
TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCTCTT
Found at i:1925341 original size:92 final size:92
Alignment explanation
Indices: 1925174--1925832 Score: 989
Period size: 92 Copynumber: 7.1 Consensus size: 92
1925164 CGGTGGCAAC
* *
1925174 CCTTCTAAGCCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCT-TCTTTAAGTCCAAC
1 CCTT-TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTT-TATCTTTAAGTCCAAT
*
1925238 GTAGCTGGCCTTGACTCAGCACATTGGCA
64 GTAGCTGGCCTTGAATCAGCACATTGGCA
*
1925267 CCATTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGTCCAATGT
1 CCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGTCCAATGT
* *
1925332 AGCTAGCCTTGACTCAGCACATTGGCA
66 AGCTGGCCTTGAATCAGCACATTGGCA
* * * * *
1925359 CCTTCATCTGTAAGTCCAATGTAGCTAGCCTTGAATCAGCACATTGGCACC-TCACCTTTAAGTC
1 -C--C-T-T-TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGTC
* *
1925423 CAATGTATCTGGCCTTGACTCAGCACATTGGCA
60 CAATGTAGCTGGCCTTGAATCAGCACATTGGCA
1925456 CCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGTCCAATGT
1 CCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGTCCAATGT
1925521 AGCTGGCCTTGAATCAGCACATTGGCA
66 AGCTGGCCTTGAATCAGCACATTGGCA
* * * *
1925548 CCTTTAAGTCCAATATCGCTGGCCTTAAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGT
1 CCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGTCCAATGT
1925613 AGCTGGCCTTGAATCAGCACATTGGCA
66 AGCTGGCCTTGAATCAGCACATTGGCA
* * * *
1925640 CCTTTAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGT
1 CCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGTCCAATGT
1925705 AGCTGGCCTTGAATCAGCACATTGGCA
66 AGCTGGCCTTGAATCAGCACATTGGCA
*
1925732 CCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTTCCATCTTTAAGTTCAA
1 CCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACC-TTT--ATCTTTAAGTCCAA
*
1925797 TGTAGCTGGCCTTGAATCAGCACATTGACA
63 TGTAGCTGGCCTTGAATCAGCACATTGGCA
1925827 TCCTTT
1 -CCTTT
1925833 TCTCATCTTT
Statistics
Matches: 523, Mismatches: 31, Indels: 21
0.91 0.05 0.04
Matches are distributed among these distances:
91 39 0.07
92 346 0.66
93 7 0.01
94 1 0.00
95 43 0.08
96 6 0.01
97 43 0.08
98 38 0.07
ACGTcount: A:0.25, C:0.26, G:0.18, T:0.31
Consensus pattern (92 bp):
CCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGTCCAATGT
AGCTGGCCTTGAATCAGCACATTGGCA
Found at i:1925697 original size:184 final size:184
Alignment explanation
Indices: 1925174--1926416 Score: 1660
Period size: 184 Copynumber: 6.5 Consensus size: 184
1925164 CGGTGGCAAC
* * * *
1925174 CCTTCTAAGCCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGTCCAACG
1 CCTT-TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATG
* * * *
1925239 TAGCTGGCCTTGACTCAGCACATTGGCACCATTAAGTCCAATATAGCTGGCCTTGAATCAGCATA
65 TAGCTGGCCTTGAATCAGCACATTGGCACCTTTAAGCCCAATATCGCTGGCCTTGAATCAGCATA
* * * *
1925304 TTGGCACCTTTATCTTTAAGTCCAATGTAGCTAGCCTTGACTCAGCACATTGGCA
130 TTGGCATCTTCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA
* * * * *
1925359 CCTTCATCTGTAAGTCCAATGTAGCTAGCCTTGAATCAGCACATTGGCA-CCTCACCTTTAAGTC
1 -C--C-T-T-TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTC
* * * *
1925423 CAATGTATCTGGCCTTGACTCAGCACATTGGCACCTTTAAGTCCAATATAGCTGGCCTTGAATCA
60 CAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTTAAGCCCAATATCGCTGGCCTTGAATCA
* *
1925488 GCATATTGGCACCTTTATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA
125 GCATATTGGCATCTTCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA
* *
1925548 CCTTTAAGTCCAATATCGCTGGCCTTAAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGT
1 CCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGT
1925613 AGCTGGCCTTGAATCAGCACATTGGCACCTTTAAGCCCAATATCGCTGGCCTTGAATCAGCATAT
66 AGCTGGCCTTGAATCAGCACATTGGCACCTTTAAGCCCAATATCGCTGGCCTTGAATCAGCATAT
1925678 TGGCATCTTCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA
131 TGGCATCTTCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA
* *
1925732 CCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTTCCATCTTTAAGTTCAA
1 CCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA--TCTT-CATCTTTAAGTCCAA
* *
1925797 TGTAGCTGGCCTTGAATCAGCACATTGACATCCTTTTCTCATCTTTAAGCCCAATATCGTTGGCC
63 TGTAGCTGGCCTTGAATCAGCACATTGGCA---------C--CTTTAAGCCCAATATCGCTGGCC
* * * * *
1925862 ATGAATGAACATATTGGCATCTTTATCACTTTTCTCATCATCATCTTTAAGTCCAATATTGCTGG
117 TTGAATCAGCATATTGG---------CA------TC-T--TCATCTTTAAGTCCAATGTAGCTGG
* *
1925927 CCTTGACTCAACACATTGGCA
164 CCTTGAATCAGCACATTGGCA
* * *
1925948 CCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGAACCTTTATCTTTAAGTCCAATGT
1 CCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGT
*
1926013 AGCTGGCCTTGAATCAGCACATTGGCACCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATAT
66 AGCTGGCCTTGAATCAGCACATTGGCACCTTTAAGCCCAATATCGCTGGCCTTGAATCAGCATAT
1926078 TGGCATCTTCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA
131 TGGCATCTTCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA
* * * *
1926132 CCTTTAAGCCCAATATCGCTAGCCTTGAATTAGCATATTGGCATCTTCATCTTTAAGTCCAATGT
1 CCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGT
1926197 AGCTGGCCTTGAATCAGCACATTGGCACCTTTAAGCCCAATATCGCTGGCCTTGAATCAGCATAT
66 AGCTGGCCTTGAATCAGCACATTGGCACCTTTAAGCCCAATATCGCTGGCCTTGAATCAGCATAT
1926262 TGGCATCTTCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA
131 TGGCATCTTCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA
* *
1926316 CCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTTCCATCTTTAAGTTCAA
1 CCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA--TCTT-CATCTTTAAGTCCAA
* *
1926381 TGTAGTTGGCCTTGAATCAGCACATTGACATCCTTT
63 TGTAGCTGGCCTTGAATCAGCACATTGGCA-CCTTT
1926417 TCTCATCTTT
Statistics
Matches: 946, Mismatches: 70, Indels: 80
0.86 0.06 0.07
Matches are distributed among these distances:
183 34 0.04
184 431 0.46
185 1 0.00
186 9 0.01
187 87 0.09
188 7 0.01
189 133 0.14
190 36 0.04
193 2 0.00
196 1 0.00
198 36 0.04
202 35 0.04
204 1 0.00
207 2 0.00
213 44 0.05
214 3 0.00
216 84 0.09
ACGTcount: A:0.26, C:0.25, G:0.17, T:0.32
Consensus pattern (184 bp):
CCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGT
AGCTGGCCTTGAATCAGCACATTGGCACCTTTAAGCCCAATATCGCTGGCCTTGAATCAGCATAT
TGGCATCTTCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA
Found at i:1925811 original size:52 final size:54
Alignment explanation
Indices: 1925733--1926437 Score: 337
Period size: 43 Copynumber: 14.3 Consensus size: 54
1925723 ACATTGGCAC
* *
1925733 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA-CCTTTTC-CAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGACATCCTTTTCTCAT
* *
1925785 CTTTAAGTTCAATGTAGCTGGCCTTGAATCAGCACATTGACATCCTTTTCTCAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGACATCCTTTTCTCAT
* * * * * * *
1925839 CTTTAAGCCCAATATCGTTGGCCATGAATGAACATATTGGCATCTTTATCACTTTTCTCATCATC
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATT-G-A-C---ATC-C--TT-T--TC-TC
1925904 AT
53 AT
* * * *
1925906 CTTTAAGTCCAATATTGCTGGCCTTGACTCAACACATTGGCA---------C--
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGACATCCTTTTCTCAT
*
1925949 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGA-A-CC--TT-T-AT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATT-GACATCCTTTTCTCAT
* *
1925998 CTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA---------C--
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGACATCCTTTTCTCAT
* * *
1926041 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCAT-C---T-TCAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGACATCCTTTTCTCAT
* *
1926090 CTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA---------C--
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGACATCCTTTTCTCAT
* * * * * *
1926133 CTTTAAGCCCAATATCGCTAGCCTTGAATTAGCATATTGGCAT-C---T-TCAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGACATCCTTTTCTCAT
* *
1926182 CTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA---------C--
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGACATCCTTTTCTCAT
* * * *
1926225 CTTTAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCAT-C---T-TCAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGACATCCTTTTCTCAT
* *
1926274 CTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA---------C--
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGACATCCTTTTCTCAT
* *
1926317 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA-CCTTTTC-CAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGACATCCTTTTCTCAT
* * *
1926369 CTTTAAGTTCAATGTAGTTGGCCTTGAATCAGCACATTGACATCCTTTTCTCAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGACATCCTTTTCTCAT
*
1926423 CTTTAAGCCCAATAT
1 CTTTAAGTCCAATAT
1926438 CATTGGCCAT
Statistics
Matches: 534, Mismatches: 65, Indels: 106
0.76 0.09 0.15
Matches are distributed among these distances:
43 188 0.35
44 1 0.00
45 4 0.01
47 3 0.01
48 1 0.00
49 150 0.28
50 1 0.00
52 75 0.14
53 14 0.03
54 47 0.09
55 1 0.00
56 1 0.00
57 1 0.00
60 3 0.01
61 2 0.00
63 2 0.00
64 2 0.00
66 3 0.01
67 35 0.07
ACGTcount: A:0.26, C:0.25, G:0.16, T:0.33
Consensus pattern (54 bp):
CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGACATCCTTTTCTCAT
Found at i:1925954 original size:43 final size:43
Alignment explanation
Indices: 1925906--1926363 Score: 520
Period size: 43 Copynumber: 10.1 Consensus size: 43
1925896 TCATCATCAT
* * *
1925906 CTTTAAGTCCAATATTGCTGGCCTTGACTCAACACATTGGCAC
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCAC
* *
1925949 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGAACCTTTAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGG---C---AC
*
1925998 CTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCAC
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCAC
* *
1926041 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTC
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCA----C
*
1926088 ATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCAC
1 --CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCAC
* * * * *
1926133 CTTTAAGCCCAATATCGCTAGCCTTGAATTAGCATATTGGCATCTTC
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCA----C
*
1926180 ATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCAC
1 --CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCAC
* * *
1926225 CTTTAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTC
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCA----C
*
1926272 ATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCAC
1 --CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCAC
*
1926317 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCAC
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCAC
1926360 CTTT
1 CTTT
1926364 TCCATCTTTA
Statistics
Matches: 355, Mismatches: 36, Indels: 48
0.81 0.08 0.11
Matches are distributed among these distances:
43 195 0.55
45 3 0.01
46 2 0.01
47 3 0.01
49 152 0.43
ACGTcount: A:0.26, C:0.25, G:0.18, T:0.31
Consensus pattern (43 bp):
CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCAC
Found at i:1926023 original size:92 final size:92
Alignment explanation
Indices: 1925897--1926416 Score: 842
Period size: 92 Copynumber: 5.6 Consensus size: 92
1925887 TCACTTTTCT
* * * * *
1925897 CATCATCATCTTTAAGTCCAATATTGCTGGCCTTGACTCAACACATTGGCACCTTTAAGTCCAAT
1 CATCTTCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTTAAGTCCAAT
*
1925962 ATAGCTGGCCTTGAATCAGCATATTGG
66 ATCGCTGGCCTTGAATCAGCATATTGG
* * *
1925989 AACCTTTATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTTAAGTCCAAT
1 CATCTTCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTTAAGTCCAAT
1926054 ATCGCTGGCCTTGAATCAGCATATTGG
66 ATCGCTGGCCTTGAATCAGCATATTGG
*
1926081 CATCTTCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTTAAGCCCAAT
1 CATCTTCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTTAAGTCCAAT
* *
1926146 ATCGCTAGCCTTGAATTAGCATATTGG
66 ATCGCTGGCCTTGAATCAGCATATTGG
*
1926173 CATCTTCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTTAAGCCCAAT
1 CATCTTCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTTAAGTCCAAT
1926238 ATCGCTGGCCTTGAATCAGCATATTGG
66 ATCGCTGGCCTTGAATCAGCATATTGG
1926265 CATCTTCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTTAAGTCCAAT
1 CATCTTCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTTAAGTCCAAT
*
1926330 ATAGCTGGCCTTGAATCAGCATATTGG
66 ATCGCTGGCCTTGAATCAGCATATTGG
* * * *
1926357 CACCTTTTCCATCTTTAAGTTCAATGTAGTTGGCCTTGAATCAGCACATTGACATCCTTT
1 CA--TCTT-CATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA-CCTTT
1926417 TCTCATCTTT
Statistics
Matches: 401, Mismatches: 23, Indels: 4
0.94 0.05 0.01
Matches are distributed among these distances:
92 351 0.88
94 3 0.01
95 42 0.10
96 5 0.01
ACGTcount: A:0.26, C:0.25, G:0.17, T:0.32
Consensus pattern (92 bp):
CATCTTCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTTAAGTCCAAT
ATCGCTGGCCTTGAATCAGCATATTGG
Found at i:1926445 original size:54 final size:52
Alignment explanation
Indices: 1926317--1926451 Score: 173
Period size: 52 Copynumber: 2.6 Consensus size: 52
1926307 ACATTGGCAC
* * *
1926317 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTTCCAT
1 CTTTAAGTCCAATATAGTTGGCCTTGAATCAGCACATTGACACCTTTTCCAT
* *
1926369 CTTTAAGTTCAATGTAGTTGGCCTTGAATCAGCACATTGACATCCTTTTCTCAT
1 CTTTAAGTCCAATATAGTTGGCCTTGAATCAGCACATTGACA-CCTTTTC-CAT
* *
1926423 CTTTAAGCCCAATATCA-TTGGCCATGAAT
1 CTTTAAGTCCAATAT-AGTTGGCCTTGAAT
1926452 GAACATATTG
Statistics
Matches: 71, Mismatches: 9, Indels: 4
0.85 0.11 0.05
Matches are distributed among these distances:
52 37 0.52
53 7 0.10
54 26 0.37
55 1 0.01
ACGTcount: A:0.26, C:0.24, G:0.15, T:0.36
Consensus pattern (52 bp):
CTTTAAGTCCAATATAGTTGGCCTTGAATCAGCACATTGACACCTTTTCCAT
Found at i:1926531 original size:584 final size:584
Alignment explanation
Indices: 1925315--1926535 Score: 2165
Period size: 584 Copynumber: 2.1 Consensus size: 584
1925305 TGGCACCTTT
* * * *
1925315 ATCTTTAAGTCCAATGTAGCTAGCCTTGACTCAGCACATTGGCACCTTCATCTGTAAGTCCAATG
1 ATCTTTAAGTCCAATATTGCTGGCCTTGACTCAGCACATTGGCA-C--C-T-TGTAAGTCCAATA
* * *
1925380 TAGCTAGCCTTGAATCAGCACATTGGCACCTCACCTTTAAGTCCAATGTATCTGGCCTTGACTCA
61 TAGCTAGCCTTGAATCAGCACATTGGAACCTCACCTTTAAGTCCAATGTAGCTGGCCTTGAATCA
*
1925445 GCACATTGGCACCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTT
126 GCACATTGGCACCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTT
* *
1925510 AAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTTAAGTCCAATATCGCTGGCCTTA
191 AAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTTAAGCCCAATATCGCTAGCCTTA
1925575 AATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA
256 AATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA
1925640 CCTTTAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGT
321 CCTTTAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGT
1925705 AGCTGGCCTTGAATCAGCACATTGGCACCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATAT
386 AGCTGGCCTTGAATCAGCACATTGGCACCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATAT
1925770 TGGCACCTTTTCCATCTTTAAGTTCAATGTAGCTGGCCTTGAATCAGCACATTGACATCCTTTTC
451 TGGCACCTTTTCCATCTTTAAGTTCAATGTAGCTGGCCTTGAATCAGCACATTGACATCCTTTTC
* *
1925835 TCATCTTTAAGCCCAATATCGTTGGCCATGAATGAACATATTGGCATCTTTATCACTTTTCTCAT
516 TCATCTTTAAGCCCAATATCATTGGCCATGAATGAACATATTGGCATCTTTATCACTTTTCCCAT
1925900 CATC
581 CATC
*
1925904 ATCTTTAAGTCCAATATTGCTGGCCTTGACTCAACACATTGGCACCTT-TAAGTCCAATATAGCT
1 ATCTTTAAGTCCAATATTGCTGGCCTTGACTCAGCACATTGGCACCTTGTAAGTCCAATATAGCT
* * * *
1925968 GGCCTTGAATCAGCATATTGGAACCTTTATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCAC
66 AGCCTTGAATCAGCACATTGGAACC-TCACCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCAC
* *
1926033 ATTGGCACCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGT
130 ATTGGCACCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGT
* *
1926098 CCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTTAAGCCCAATATCGCTAGCCTTGAATT
195 CCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTTAAGCCCAATATCGCTAGCCTTAAATC
1926163 AGCATATTGGCATCTTCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTT
260 AGCATATTGGCATCTTCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTT
1926228 TAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGTAGCT
325 TAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGTAGCT
1926293 GGCCTTGAATCAGCACATTGGCACCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGC
390 GGCCTTGAATCAGCACATTGGCACCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGC
*
1926358 ACCTTTTCCATCTTTAAGTTCAATGTAGTTGGCCTTGAATCAGCACATTGACATCCTTTTCTCAT
455 ACCTTTTCCATCTTTAAGTTCAATGTAGCTGGCCTTGAATCAGCACATTGACATCCTTTTCTCAT
1926423 CTTTAAGCCCAATATCATTGGCCATGAATGAACATATTGGCATCTTTATCACTTTTCCCATCATC
520 CTTTAAGCCCAATATCATTGGCCATGAATGAACATATTGGCATCTTTATCACTTTTCCCATCATC
* *
1926488 ATCTTTAAGTCCAATATTGCTGGCCTTGAATCAGCATATTGGCACCTT
1 ATCTTTAAGTCCAATATTGCTGGCCTTGACTCAGCACATTGGCACCTT
1926536 CATCATCTCT
Statistics
Matches: 606, Mismatches: 25, Indels: 7
0.95 0.04 0.01
Matches are distributed among these distances:
583 37 0.06
584 526 0.87
585 1 0.00
586 1 0.00
588 1 0.00
589 40 0.07
ACGTcount: A:0.26, C:0.25, G:0.17, T:0.33
Consensus pattern (584 bp):
ATCTTTAAGTCCAATATTGCTGGCCTTGACTCAGCACATTGGCACCTTGTAAGTCCAATATAGCT
AGCCTTGAATCAGCACATTGGAACCTCACCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACA
TTGGCACCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTC
CAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTTAAGCCCAATATCGCTAGCCTTAAATCA
GCATATTGGCATCTTCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTT
AAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGTAGCTG
GCCTTGAATCAGCACATTGGCACCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA
CCTTTTCCATCTTTAAGTTCAATGTAGCTGGCCTTGAATCAGCACATTGACATCCTTTTCTCATC
TTTAAGCCCAATATCATTGGCCATGAATGAACATATTGGCATCTTTATCACTTTTCCCATCATC
Found at i:1927355 original size:33 final size:33
Alignment explanation
Indices: 1927318--1927384 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
1927308 TTCAATGATT
1927318 TGTATCGATACATAAAGTGTTGTATCGATACAA
1 TGTATCGATACATAAAGTGTTGTATCGATACAA
*** *
1927351 TGTATCGATACATATTTTTTTGTATCGATACAA
1 TGTATCGATACATAAAGTGTTGTATCGATACAA
1927384 T
1 T
1927385 TTAAGCTACT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.33, C:0.12, G:0.15, T:0.40
Consensus pattern (33 bp):
TGTATCGATACATAAAGTGTTGTATCGATACAA
Found at i:1927356 original size:13 final size:13
Alignment explanation
Indices: 1927338--1927362 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1927328 CATAAAGTGT
1927338 TGTATCGATACAA
1 TGTATCGATACAA
1927351 TGTATCGATACA
1 TGTATCGATACA
1927363 TATTTTTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:1927586 original size:52 final size:52
Alignment explanation
Indices: 1927458--1927578 Score: 215
Period size: 52 Copynumber: 2.3 Consensus size: 52
1927448 CACCGATCTT
*
1927458 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGACACATTATAAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGACACACTATAAAA
* *
1927510 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATTAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGACACACTATAAAA
1927562 TGTATCGATACATGCAG
1 TGTATCGATACATGCAG
1927579 ATAAATTTTC
Statistics
Matches: 66, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
52 66 1.00
ACGTcount: A:0.35, C:0.19, G:0.18, T:0.28
Consensus pattern (52 bp):
TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGACACACTATAAAA
Found at i:1941870 original size:30 final size:30
Alignment explanation
Indices: 1941836--1941898 Score: 117
Period size: 30 Copynumber: 2.1 Consensus size: 30
1941826 TACTGATGAG
1941836 CAAATTCTCAACATTAGGGGAGCAAATTCT
1 CAAATTCTCAACATTAGGGGAGCAAATTCT
*
1941866 CAAATTCTCAACATTGGGGGAGCAAATTCT
1 CAAATTCTCAACATTAGGGGAGCAAATTCT
1941896 CAA
1 CAA
1941899 CATTGGGGGA
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.37, C:0.21, G:0.17, T:0.25
Consensus pattern (30 bp):
CAAATTCTCAACATTAGGGGAGCAAATTCT
Found at i:1941894 original size:22 final size:22
Alignment explanation
Indices: 1941866--1941908 Score: 86
Period size: 22 Copynumber: 2.0 Consensus size: 22
1941856 AGCAAATTCT
1941866 CAAATTCTCAACATTGGGGGAG
1 CAAATTCTCAACATTGGGGGAG
1941888 CAAATTCTCAACATTGGGGGA
1 CAAATTCTCAACATTGGGGGA
1941909 AGATGCCTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.33, C:0.19, G:0.26, T:0.23
Consensus pattern (22 bp):
CAAATTCTCAACATTGGGGGAG
Found at i:1942565 original size:42 final size:42
Alignment explanation
Indices: 1942496--1943523 Score: 464
Period size: 42 Copynumber: 24.6 Consensus size: 42
1942486 TTTTCTTACC
* * * *
1942496 CCTC-AGTCTACCTATCGACTTTAACCTTAGAGACTGCCTCA
1 CCTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGACTGCCTCA
* * * *
1942537 TCTCAAGTCTGCCTATCAGCTTTGACCTTAGAGACTTTCCT-A
1 CCTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC-TGCCTCA
* * * *
1942579 CCTTCAA-TCTGCTTGTCGGCTTTGACCCTAGAGACTACCTTA
1 CC-TCAAGTCTGCCTGTCGGCTTTGACCTTAGAGACTGCCTCA
* * ** * * ** *
1942621 TCTCAAGTTTGCCTGTCGATTTTAACCTTTGAGACTTTCTTA
1 CCTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGACTGCCTCA
** * * *
1942663 CCCTTTAGTCTGCTTGTCGGCTTTGACCCTAGAGACTACCTCA
1 -CCTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGACTGCCTCA
* * * *
1942706 CCTAAAGTTTGCCTGTCGGCTTTGACCTTGGAGACTTTCCT-A
1 CCTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC-TGCCTCA
* ** * *
1942748 CCTTC-AGTCTGCCTATCAACTTTGACCTTGGAGACTACCTCA
1 CC-TCAAGTCTGCCTGTCGGCTTTGACCTTAGAGACTGCCTCA
* * * * * *
1942790 TCTAAAGTCTGCCTATCGACTTTGACCTTGGAGACTTTCCT-A
1 CCTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC-TGCCTCA
* * *
1942832 CCTTC-AGTCTGCCTATCAGCTTTGACCCTAGAGACTGCCTCA
1 CC-TCAAGTCTGCCTGTCGGCTTTGACCTTAGAGACTGCCTCA
* * * * * * *
1942874 TCTCAATTTTGCTTGTTGGCTTTGACCTTGGAGACTTG-CTTA
1 CCTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGAC-TGCCTCA
** *
1942916 CCTTC-AGTCTGCCTGTCGATTTTGACCCTAGAGACTGCCTCA
1 CC-TCAAGTCTGCCTGTCGGCTTTGACCTTAGAGACTGCCTCA
* * * * *
1942958 CCTAAAGTCTACCTGTCAGCTTTGACCATT-GAGACCT-TCTTA
1 CCTCAAGTCTGCCTGTCGGCTTTGACC-TTAGAGA-CTGCCTCA
* * * * *
1943000 CCTTC-AGTCTGCTTATCGACTTTAACCCTT------T-TCT-A
1 CC-TCAAGTCTGCCTGTCGGCTTTGA-CCTTAGAGACTGCCTCA
* * * * * * * *
1943035 CCTTC-AGTCTGCTTGTCGACCTTAACCCTAGAAACTACCTTA
1 CC-TCAAGTCTGCCTGTCGGCTTTGACCTTAGAGACTGCCTCA
* ** * ** *
1943077 CCTCAAGTTTGTTTGTCGGCTTTGACCTTGGAGACTTTCTTA
1 CCTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGACTGCCTCA
* * * *
1943119 CCTTTC-AGTCTGCCTATCGGCTTTGACCCTGGAGACTGCTTCA
1 CC--TCAAGTCTGCCTGTCGGCTTTGACCTTAGAGACTGCCTCA
* * * * *
1943162 CCTAAAGTCTGCCTGTCAGCTTTGACCATGGAGACTACCTCA
1 CCTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGACTGCCTCA
* * * * ** *
1943204 CCTCAAGTCTACCTGTCGACTCTGACCTTAGAAACTTTCTTA
1 CCTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGACTGCCTCA
* * *
1943246 CC-CTTAGTCTGCCTATCGGCTTTGACCTTGGAGACTGCCTCA
1 CCTC-AAGTCTGCCTGTCGGCTTTGACCTTAGAGACTGCCTCA
* * * ** *
1943288 TCTCAAGTTTGTCTGTCGGCTTTGACCTT-GAAGACTTTCTTA
1 CCTCAAGTCTGCCTGTCGGCTTTGACCTTAG-AGACTGCCTCA
*
1943330 CCCTC-AGTCTG-CTGATCGGCTTTGACCCTAGAGACTGCCTCA
1 -CCTCAAGTCTGCCTG-TCGGCTTTGACCTTAGAGACTGCCTCA
* * * ** * * **
1943372 TCTCAAGTCTGTCTATTAGCTTTGACCCTGGAGACT-TTTCTA
1 CCTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGACTGCCTC-A
* * * **
1943414 CCTTC-AGTCT-ACTGTCGG-TTTAACCCTAGAGACTATCTCA
1 CC-TCAAGTCTGCCTGTCGGCTTTGACCTTAGAGACTGCCTCA
* ** * * ** *
1943454 CCTCAAGTTTGCCTGTCTACTTTGACCCT-GAAAACTTTCTTA
1 CCTCAAGTCTGCCTGTCGGCTTTGACCTTAG-AGACTGCCTCA
1943496 CCCTCAAGTCTGCCTGTCGAG-TTTGACC
1 -CCTCAAGTCTGCCTGTCG-GCTTTGACC
1943524 CCGAAGACTT
Statistics
Matches: 752, Mismatches: 184, Indels: 100
0.73 0.18 0.10
Matches are distributed among these distances:
34 3 0.00
35 24 0.03
36 4 0.01
39 2 0.00
40 22 0.03
41 53 0.07
42 523 0.70
43 119 0.16
44 2 0.00
ACGTcount: A:0.19, C:0.29, G:0.17, T:0.35
Consensus pattern (42 bp):
CCTCAAGTCTGCCTGTCGGCTTTGACCTTAGAGACTGCCTCA
Found at i:1942795 original size:84 final size:84
Alignment explanation
Indices: 1942498--1943524 Score: 767
Period size: 84 Copynumber: 12.3 Consensus size: 84
1942488 TTCTTACCCC
* * * * * * *
1942498 TCAGTCTACCTATCGACTTTAACCTTAGAGACTGCCTCATCTCAAGTCTGCCTATCAGCTTTGAC
1 TCAGTCTGCCTATCGGCTTTGACCCTAGAGACTACCTCATCTCAAGTCTGCCTGTCGGCTTTGAC
*
1942563 CTTAGAGACTTTCCTACCT
66 CTTGGAGACTTTCCTACCT
* * * * * ** *
1942582 TCAATCTGCTTGTCGGCTTTGACCCTAGAGACTACCTTATCTCAAGTTTGCCTGTCGATTTTAAC
1 TCAGTCTGCCTATCGGCTTTGACCCTAGAGACTACCTCATCTCAAGTCTGCCTGTCGGCTTTGAC
* *
1942647 CTTTGAGACTTTCTTACCCT
66 CTTGGAGACTTTCCTA-CCT
* * * * * *
1942667 TTAGTCTGCTTGTCGGCTTTGACCCTAGAGACTACCTCACCTAAAGTTTGCCTGTCGGCTTTGAC
1 TCAGTCTGCCTATCGGCTTTGACCCTAGAGACTACCTCATCTCAAGTCTGCCTGTCGGCTTTGAC
1942732 CTTGGAGACTTTCCTACCT
66 CTTGGAGACTTTCCTACCT
** * * * * *
1942751 TCAGTCTGCCTATCAACTTTGACCTTGGAGACTACCTCATCTAAAGTCTGCCTATCGACTTTGAC
1 TCAGTCTGCCTATCGGCTTTGACCCTAGAGACTACCTCATCTCAAGTCTGCCTGTCGGCTTTGAC
1942816 CTTGGAGACTTTCCTACCT
66 CTTGGAGACTTTCCTACCT
* * * * * *
1942835 TCAGTCTGCCTATCAGCTTTGACCCTAGAGACTGCCTCATCTCAATTTTGCTTGTTGGCTTTGAC
1 TCAGTCTGCCTATCGGCTTTGACCCTAGAGACTACCTCATCTCAAGTCTGCCTGTCGGCTTTGAC
* *
1942900 CTTGGAGACTTGCTTACCT
66 CTTGGAGACTTTCCTACCT
* ** * * * * *
1942919 TCAGTCTGCCTGTCGATTTTGACCCTAGAGACTGCCTCACCTAAAGTCTACCTGTCAGCTTTGAC
1 TCAGTCTGCCTATCGGCTTTGACCCTAGAGACTACCTCATCTCAAGTCTGCCTGTCGGCTTTGAC
* *
1942984 CATT-GAGACCTTCTTACCT
66 C-TTGGAGACTTTCCTACCT
* * * *** * * * *
1943003 TCAGTCTGCTTATCGACTTTAACCCT--TTTCTA-C-C-T-TC-AGTCTGCTTGTCGACCTTAAC
1 TCAGTCTGCCTATCGGCTTTGACCCTAGAGACTACCTCATCTCAAGTCTGCCTGTCGGCTTTGAC
* * * *
1943061 CCTAGAAAC-TACCTTACC-
66 CTTGGAGACTTTCC-TACCT
* ** * * * * * * * *
1943079 TCAAGTTTGTTTGTCGGCTTTGACCTTGGAGACTTTCTTACCTTTC-AGTCTGCCTATCGGCTTT
1 TC-AGTCTGCCTATCGGCTTTGACCCTAGAGAC-TACCT-CATCTCAAGTCTGCCTGTCGGCTTT
*
1943143 GACCCTGGAGACTGCTT-C-ACCT
63 GACCTTGGAGACT--TTCCTACCT
** * * * * * * * *
1943165 AAAGTCTGCCTGTCAGCTTTGACCATGGAGACTACCTCACCTCAAGTCTACCTGTCGACTCTGAC
1 TCAGTCTGCCTATCGGCTTTGACCCTAGAGACTACCTCATCTCAAGTCTGCCTGTCGGCTTTGAC
* * *
1943230 CTTAGAAACTTTCTTACCCT
66 CTTGGAGACTTTCCTA-CCT
* * * * *
1943250 T-AGTCTGCCTATCGGCTTTGACCTTGGAGACTGCCTCATCTCAAGTTTGTCTGTCGGCTTTGAC
1 TCAGTCTGCCTATCGGCTTTGACCCTAGAGACTACCTCATCTCAAGTCTGCCTGTCGGCTTTGAC
* * *
1943314 CTTGAAGACTTTCTTACCC
66 CTTGGAGACTTTCCTACCT
* * * **
1943333 TCAGTCTG-CTGATCGGCTTTGACCCTAGAGACTGCCTCATCTCAAGTCTGTCTATTAGCTTTGA
1 TCAGTCTGCCT-ATCGGCTTTGACCCTAGAGACTACCTCATCTCAAGTCTGCCTGTCGGCTTTGA
* *
1943397 CCCTGGAGACTTTTCTACCT
65 CCTTGGAGACTTTCCTACCT
* * * * * * **
1943417 TCAGTCT-ACTGTCGG-TTTAACCCTAGAGACTATCTCACCTCAAGTTTGCCTGTCTACTTTGAC
1 TCAGTCTGCCTATCGGCTTTGACCCTAGAGACTACCTCATCTCAAGTCTGCCTGTCGGCTTTGAC
* * * * *
1943480 CCTGAAAACTTTCTTACCC
66 CTTGGAGACTTTCCTACCT
*
1943499 TCAAGTCTGCCTGTCGAG-TTTGACCC
1 TC-AGTCTGCCTATCG-GCTTTGACCC
1943525 CGAAGACTTT
Statistics
Matches: 748, Mismatches: 168, Indels: 53
0.77 0.17 0.05
Matches are distributed among these distances:
76 5 0.01
77 42 0.06
78 1 0.00
79 1 0.00
80 2 0.00
81 1 0.00
82 58 0.08
83 18 0.02
84 478 0.64
85 140 0.19
87 1 0.00
88 1 0.00
ACGTcount: A:0.19, C:0.29, G:0.17, T:0.35
Consensus pattern (84 bp):
TCAGTCTGCCTATCGGCTTTGACCCTAGAGACTACCTCATCTCAAGTCTGCCTGTCGGCTTTGAC
CTTGGAGACTTTCCTACCT
Found at i:1943099 original size:119 final size:120
Alignment explanation
Indices: 1942914--1943148 Score: 294
Period size: 119 Copynumber: 2.0 Consensus size: 120
1942904 GAGACTTGCT
** * * *
1942914 TACCTTCAGTCTGCCTGTCGATTTTGACCCTAGAGACTGCCTCACCTAAAGTCTACCTGTCAGCT
1 TACCTTCAGTCTGCCTGTCGACCTTAACCCTAGAAACTACCTCACCTAAAGTCTACCTGTCAGCT
*
1942979 TTGACCATT-GAGACCTTCTTACC-TTCAGTCTGCTTATCGACTTTAACCCTTTTC
66 TTGACC-TTGGAGACCTTCTTACCTTTCAGTCTGCCTATCGACTTTAACCCTTTTC
* * * * *** *
1943033 TACCTTCAGTCTGCTTGTCGACCTTAACCCTAGAAACTACCTTACCTCAAGTTTGTTTGTCGGCT
1 TACCTTCAGTCTGCCTGTCGACCTTAACCCTAGAAACTACCTCACCTAAAGTCTACCTGTCAGCT
* * *
1943098 TTGACCTTGGAGACTTTCTTACCTTTCAGTCTGCCTATCGGCTTTGACCCT
66 TTGACCTTGGAGACCTTCTTACCTTTCAGTCTGCCTATCGACTTTAACCCT
1943149 GGAGACTGCT
Statistics
Matches: 97, Mismatches: 17, Indels: 3
0.83 0.15 0.03
Matches are distributed among these distances:
118 2 0.02
119 71 0.73
120 24 0.25
ACGTcount: A:0.18, C:0.30, G:0.15, T:0.36
Consensus pattern (120 bp):
TACCTTCAGTCTGCCTGTCGACCTTAACCCTAGAAACTACCTCACCTAAAGTCTACCTGTCAGCT
TTGACCTTGGAGACCTTCTTACCTTTCAGTCTGCCTATCGACTTTAACCCTTTTC
Found at i:1944062 original size:8 final size:8
Alignment explanation
Indices: 1944048--1944094 Score: 51
Period size: 8 Copynumber: 5.9 Consensus size: 8
1944038 TAACATGAAT
1944048 TAAAA-AA
1 TAAAATAA
*
1944055 TAAAAAAA
1 TAAAATAA
*
1944063 TATAATAA
1 TAAAATAA
1944071 TAATAATAA
1 TAA-AATAA
*
1944080 TATAATAA
1 TAAAATAA
1944088 TAAAATA
1 TAAAATA
1944095 GTATTAATTA
Statistics
Matches: 33, Mismatches: 5, Indels: 3
0.80 0.12 0.07
Matches are distributed among these distances:
7 5 0.15
8 21 0.64
9 7 0.21
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (8 bp):
TAAAATAA
Found at i:1944083 original size:17 final size:16
Alignment explanation
Indices: 1944053--1944094 Score: 66
Period size: 17 Copynumber: 2.6 Consensus size: 16
1944043 TGAATTAAAA
*
1944053 AATAAAAAAATATAAT
1 AATAAAATAATATAAT
1944069 AATAATAATAATATAAT
1 AATAA-AATAATATAAT
1944086 AATAAAATA
1 AATAAAATA
1944095 GTATTAATTA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
16 9 0.38
17 15 0.62
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (16 bp):
AATAAAATAATATAAT
Found at i:1944087 original size:30 final size:29
Alignment explanation
Indices: 1944053--1944124 Score: 76
Period size: 30 Copynumber: 2.4 Consensus size: 29
1944043 TGAATTAAAA
1944053 AATAAAAAAATA-TAATAA-TAATAATAATAT
1 AATAAAAAAATAGTAATAATTAAT--TAAT-T
* *
1944083 AATAATAAAATAGTATTAATTAATTAATT
1 AATAAAAAAATAGTAATAATTAATTAATT
1944112 AATTAAAAAAATA
1 AA-TAAAAAAATA
1944125 AAAAAAATAA
Statistics
Matches: 36, Mismatches: 3, Indels: 6
0.80 0.07 0.13
Matches are distributed among these distances:
29 3 0.08
30 24 0.67
31 5 0.14
32 4 0.11
ACGTcount: A:0.65, C:0.00, G:0.01, T:0.33
Consensus pattern (29 bp):
AATAAAAAAATAGTAATAATTAATTAATT
Found at i:1944390 original size:12 final size:12
Alignment explanation
Indices: 1944373--1944402 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
1944363 TATGCTTTCA
1944373 TTTCATGCATGT
1 TTTCATGCATGT
1944385 TTTCATGCATGT
1 TTTCATGCATGT
*
1944397 GTTCAT
1 TTTCAT
1944403 ACGTGAAAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.17, C:0.17, G:0.17, T:0.50
Consensus pattern (12 bp):
TTTCATGCATGT
Found at i:1944476 original size:15 final size:15
Alignment explanation
Indices: 1944441--1944486 Score: 51
Period size: 15 Copynumber: 3.2 Consensus size: 15
1944431 ATGAAAAACA
* *
1944441 CATTGCATTGCATTA
1 CATTGCATTTCATTG
*
1944456 CGTTGCATTTCATTG
1 CATTGCATTTCATTG
1944471 CATTGC-TTTCA-TG
1 CATTGCATTTCATTG
1944484 CAT
1 CAT
1944487 GCGTTTTCAC
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
13 5 0.19
14 5 0.19
15 17 0.63
ACGTcount: A:0.20, C:0.22, G:0.15, T:0.43
Consensus pattern (15 bp):
CATTGCATTTCATTG
Found at i:1944869 original size:56 final size:56
Alignment explanation
Indices: 1944783--1944891 Score: 175
Period size: 56 Copynumber: 1.9 Consensus size: 56
1944773 TGCAAATGGC
* *
1944783 AGCAATGAAGAGTATAATGAAGACACCAACGTGCTACAATGGAGAGAAGAAACAGT
1 AGCAATGAAGAGAATAATGAAGACACCAACGTGCTACAATGAAGAGAAGAAACAGT
*
1944839 AGCAATGAAGA-AAGTAATGAAGACACCAACGTGCTGCAATGAAGAGAAGAAAC
1 AGCAATGAAGAGAA-TAATGAAGACACCAACGTGCTACAATGAAGAGAAGAAAC
1944892 GACAGCATGA
Statistics
Matches: 49, Mismatches: 3, Indels: 2
0.91 0.06 0.04
Matches are distributed among these distances:
55 1 0.02
56 48 0.98
ACGTcount: A:0.48, C:0.15, G:0.25, T:0.13
Consensus pattern (56 bp):
AGCAATGAAGAGAATAATGAAGACACCAACGTGCTACAATGAAGAGAAGAAACAGT
Found at i:1945101 original size:14 final size:14
Alignment explanation
Indices: 1945073--1945110 Score: 51
Period size: 14 Copynumber: 2.8 Consensus size: 14
1945063 AACAAAAAAG
*
1945073 AAAATG-AATAGAA
1 AAAATGAAAAAGAA
1945086 AAAATGAAAAAGAA
1 AAAATGAAAAAGAA
*
1945100 AAAAGGAAAAA
1 AAAATGAAAAA
1945111 AGAGAAGCAG
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
13 6 0.27
14 16 0.73
ACGTcount: A:0.76, C:0.00, G:0.16, T:0.08
Consensus pattern (14 bp):
AAAATGAAAAAGAA
Found at i:1945385 original size:20 final size:20
Alignment explanation
Indices: 1945360--1945400 Score: 73
Period size: 20 Copynumber: 2.0 Consensus size: 20
1945350 ACAAGCAACA
*
1945360 ATCAATTCCAGCAAATAAAC
1 ATCAATTCCAACAAATAAAC
1945380 ATCAATTCCAACAAATAAAC
1 ATCAATTCCAACAAATAAAC
1945400 A
1 A
1945401 CCAGTAAAAC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.54, C:0.24, G:0.02, T:0.20
Consensus pattern (20 bp):
ATCAATTCCAACAAATAAAC
Found at i:1948208 original size:13 final size:13
Alignment explanation
Indices: 1948190--1948215 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
1948180 CAATTTTTTG
1948190 TGTATCGATACAT
1 TGTATCGATACAT
1948203 TGTATCGATACAT
1 TGTATCGATACAT
1948216 ACTTGGTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:1948230 original size:32 final size:33
Alignment explanation
Indices: 1948170--1948233 Score: 94
Period size: 32 Copynumber: 2.0 Consensus size: 33
1948160 TACAAGCCAA
** *
1948170 TGTATCGATACAATTTTTTGTGTATCGATACAT
1 TGTATCGATACAATACTTGGTGTATCGATACAT
1948203 TGTATCGATAC-ATACTTGGTGTATCGATACA
1 TGTATCGATACAATACTTGGTGTATCGATACA
1948234 AGTTTGGCTA
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
32 17 0.61
33 11 0.39
ACGTcount: A:0.28, C:0.14, G:0.17, T:0.41
Consensus pattern (33 bp):
TGTATCGATACAATACTTGGTGTATCGATACAT
Found at i:1948918 original size:16 final size:16
Alignment explanation
Indices: 1948897--1948931 Score: 70
Period size: 16 Copynumber: 2.2 Consensus size: 16
1948887 ACGCATTCTC
1948897 TTACGCATTCTCCCCT
1 TTACGCATTCTCCCCT
1948913 TTACGCATTCTCCCCT
1 TTACGCATTCTCCCCT
1948929 TTA
1 TTA
1948932 TCTCCCCCGT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.14, C:0.40, G:0.06, T:0.40
Consensus pattern (16 bp):
TTACGCATTCTCCCCT
Found at i:1948973 original size:21 final size:21
Alignment explanation
Indices: 1948932--1948975 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
1948922 CTCCCCTTTA
* *
1948932 TCTCCCCCGTTTATTAATAAT
1 TCTCCCCCGTTAATCAATAAT
1948953 TCTCCCCC-TTAATCAAGTAAT
1 TCTCCCCCGTTAATCAA-TAAT
1948974 TC
1 TC
1948976 ATATCAAAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
20 6 0.30
21 14 0.70
ACGTcount: A:0.25, C:0.32, G:0.05, T:0.39
Consensus pattern (21 bp):
TCTCCCCCGTTAATCAATAAT
Found at i:1950784 original size:13 final size:13
Alignment explanation
Indices: 1950766--1950791 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
1950756 ATAATCACCC
1950766 TGTATCGATACAA
1 TGTATCGATACAA
1950779 TGTATCGATACAA
1 TGTATCGATACAA
1950792 AGAAAAATGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:1950832 original size:25 final size:25
Alignment explanation
Indices: 1950798--1950860 Score: 126
Period size: 25 Copynumber: 2.5 Consensus size: 25
1950788 ACAAAGAAAA
1950798 ATGTATCGATACATTGAATTTCCAG
1 ATGTATCGATACATTGAATTTCCAG
1950823 ATGTATCGATACATTGAATTTCCAG
1 ATGTATCGATACATTGAATTTCCAG
1950848 ATGTATCGATACA
1 ATGTATCGATACA
1950861 CAGAAGCATG
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 38 1.00
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.35
Consensus pattern (25 bp):
ATGTATCGATACATTGAATTTCCAG
Found at i:1953835 original size:13 final size:13
Alignment explanation
Indices: 1953817--1953842 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
1953807 TACAGCAAGT
1953817 ATGTATCGATACA
1 ATGTATCGATACA
1953830 ATGTATCGATACA
1 ATGTATCGATACA
1953843 CAAAAAATTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:1956097 original size:15 final size:16
Alignment explanation
Indices: 1956073--1956105 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
1956063 CAATCTTTTG
1956073 TTCAAGA-TTTTCAAT
1 TTCAAGATTTTTCAAT
*
1956088 TTCAATATTTTTCAAT
1 TTCAAGATTTTTCAAT
1956104 TT
1 TT
1956106 ATTATCTTCT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 6 0.38
16 10 0.62
ACGTcount: A:0.30, C:0.12, G:0.03, T:0.55
Consensus pattern (16 bp):
TTCAAGATTTTTCAAT
Found at i:1958177 original size:13 final size:13
Alignment explanation
Indices: 1958159--1958184 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
1958149 CAATTTTTTG
1958159 TGTATCGATACAT
1 TGTATCGATACAT
1958172 TGTATCGATACAT
1 TGTATCGATACAT
1958185 ACTTGGTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:1960819 original size:128 final size:129
Alignment explanation
Indices: 1960685--1960938 Score: 404
Period size: 128 Copynumber: 2.0 Consensus size: 129
1960675 ATTTTAAAAG
*
1960685 ATAATTGAAGTTATATAATTAAAATAAA-TTAATAATTTTGTCATATTGATTTATTTTATTAAAT
1 ATAATTGAAGTTATAAAATTAAAATAAATTTAA-AATTTTGTCATATTGATTTATTTTATTAAAT
* * * * *
1960749 TAATGTTTTTAAAATAAAATTATATTTATTTTAAATTTAGATTATTTTAGATTAAT-TTTTTGAT
65 TAATATTTTTAAAATAAAATTATAATTAATTTAAATTTAAATTATTTTAAATTAATATTTTTGAT
* * *
1960813 ATAATTGAAGTTATAAAATTAAAATAAATTTAAATTTTTGTCATTTTTATTTATTTTATTAAATT
1 ATAATTGAAGTTATAAAATTAAAATAAATTTAAAATTTTGTCATATTGATTTATTTTATTAAATT
1960878 AATATTTTTAAAATAAAATTATAATTAATTTAAATTTAAATTATTTTAAATTAATATTTTT
66 AATATTTTTAAAATAAAATTATAATTAATTTAAATTTAAATTATTTTAAATTAATATTTTT
1960939 AAATTATTTA
Statistics
Matches: 115, Mismatches: 9, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
128 106 0.92
129 9 0.08
ACGTcount: A:0.43, C:0.01, G:0.04, T:0.52
Consensus pattern (129 bp):
ATAATTGAAGTTATAAAATTAAAATAAATTTAAAATTTTGTCATATTGATTTATTTTATTAAATT
AATATTTTTAAAATAAAATTATAATTAATTTAAATTTAAATTATTTTAAATTAATATTTTTGAT
Found at i:1960908 original size:65 final size:65
Alignment explanation
Indices: 1960720--1960914 Score: 186
Period size: 65 Copynumber: 3.0 Consensus size: 65
1960710 AAATTAATAA
* * * *
1960720 TTTTGTCATATTGATTTATTTTATTAAATTAATGTTTTTAAAATAAAATTATATTTATTTTAAA-
1 TTTTGTCATTTTGATTTATTTTATTAAATTAATATTTTTAAAATAAAATTATAATTAATTTAAAT
* * * * * * * * *
1960784 TTTAGATTATTTTAGATTAATTTT-TT-GA-T-ATA-ATTGAAGTTATAAAATTAAAATAAATTT
1 TTTTG-TCATTTT-GATTTATTTTATTAAATTAATATTTTTAA--AATAAAATTATAATTAATTT
1960844 AAAT
62 AAAT
*
1960848 TTTTGTCATTTTTATTTATTTTATTAAATTAATATTTTTAAAATAAAATTATAATTAATTTAAAT
1 TTTTGTCATTTTGATTTATTTTATTAAATTAATATTTTTAAAATAAAATTATAATTAATTTAAAT
1960913 TT
1 TT
1960915 AAATTATTTT
Statistics
Matches: 98, Mismatches: 23, Indels: 19
0.70 0.16 0.14
Matches are distributed among these distances:
61 4 0.04
62 10 0.10
63 27 0.28
64 10 0.10
65 31 0.32
66 12 0.12
67 4 0.04
ACGTcount: A:0.40, C:0.01, G:0.05, T:0.54
Consensus pattern (65 bp):
TTTTGTCATTTTGATTTATTTTATTAAATTAATATTTTTAAAATAAAATTATAATTAATTTAAAT
Found at i:1964393 original size:22 final size:21
Alignment explanation
Indices: 1964354--1964408 Score: 60
Period size: 21 Copynumber: 2.5 Consensus size: 21
1964344 AATAAAAAAT
1964354 TATTTTTTATTAATATTTATA
1 TATTTTTTATTAATATTTATA
1964375 TATTTTTATAATTAA-ATTTA-A
1 TATTTTT-T-ATTAATATTTATA
1964396 GTAATTTTTTATT
1 -T-ATTTTTTATT
1964409 TTTAAATATT
Statistics
Matches: 30, Mismatches: 0, Indels: 8
0.79 0.00 0.21
Matches are distributed among these distances:
21 11 0.37
22 8 0.27
23 11 0.37
ACGTcount: A:0.35, C:0.00, G:0.02, T:0.64
Consensus pattern (21 bp):
TATTTTTTATTAATATTTATA
Found at i:1964722 original size:28 final size:28
Alignment explanation
Indices: 1964659--1964725 Score: 89
Period size: 29 Copynumber: 2.4 Consensus size: 28
1964649 TTATCTAGAT
* *
1964659 ATAAATTAAAAGATAAAAATTTATTTGA
1 ATAAATAAAAAGATAAAAATTTATTTAA
* *
1964687 ATGCAATAAAAATATAAAAATTTATTTAA
1 AT-AAATAAAAAGATAAAAATTTATTTAA
1964716 ATAAATAAAA
1 ATAAATAAAA
1964726 TGATTCTAAG
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
28 9 0.27
29 24 0.73
ACGTcount: A:0.61, C:0.01, G:0.04, T:0.33
Consensus pattern (28 bp):
ATAAATAAAAAGATAAAAATTTATTTAA
Found at i:1965838 original size:22 final size:22
Alignment explanation
Indices: 1965803--1965860 Score: 66
Period size: 22 Copynumber: 2.7 Consensus size: 22
1965793 ACAAATATTT
*
1965803 AAAAAT-TTATATATGAATTAT-
1 AAAAATATTAAATATG-ATTATA
* *
1965824 TAATATATTAAATATGATTATA
1 AAAAATATTAAATATGATTATA
1965846 AAAAATATTAAATAT
1 AAAAATATTAAATAT
1965861 CATAATTTAT
Statistics
Matches: 30, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
21 9 0.30
22 21 0.70
ACGTcount: A:0.55, C:0.00, G:0.03, T:0.41
Consensus pattern (22 bp):
AAAAATATTAAATATGATTATA
Found at i:1966715 original size:2 final size:2
Alignment explanation
Indices: 1966710--1966738 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
1966700 TATATATATA
1966710 TG TG TG TG TG TG TG TG TG TG TG TG TG TG T
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG T
1966739 ATAGCTAAGA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.00, C:0.00, G:0.48, T:0.52
Consensus pattern (2 bp):
TG
Found at i:1968948 original size:24 final size:24
Alignment explanation
Indices: 1968920--1968965 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
1968910 AATAAAAATT
1968920 AGCCACCAATTTTGACAAACAACA
1 AGCCACCAATTTTGACAAACAACA
* * *
1968944 AGCCACCATTTTTTACATACAA
1 AGCCACCAATTTTGACAAACAA
1968966 AAATAACTAC
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.41, C:0.28, G:0.07, T:0.24
Consensus pattern (24 bp):
AGCCACCAATTTTGACAAACAACA
Done.