Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold172
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 1975206
ACGTcount: A:0.26, C:0.15, G:0.15, T:0.26
Warning! 344189 characters in sequence are not A, C, G, or T
File 3 of 11
Found at i:344720 original size:32 final size:32
Alignment explanation
Indices: 344679--344741 Score: 117
Period size: 32 Copynumber: 2.0 Consensus size: 32
344669 TAGCTAATTA
*
344679 TGTATCGATACAATACTTATGTATCGATACAT
1 TGTATCGATACAAAACTTATGTATCGATACAT
344711 TGTATCGATACAAAACTTATGTATCGATACA
1 TGTATCGATACAAAACTTATGTATCGATACA
344742 AATTGTTGAA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.37, C:0.16, G:0.13, T:0.35
Consensus pattern (32 bp):
TGTATCGATACAAAACTTATGTATCGATACAT
Found at i:344824 original size:21 final size:21
Alignment explanation
Indices: 344779--344856 Score: 111
Period size: 21 Copynumber: 3.7 Consensus size: 21
344769 GTTGGGACCC
* *
344779 TGTATCGATACATTTGTAGAAA
1 TGTATCGATACA-TTCTACAAA
*
344801 TGTATCGATACATTCCACAAA
1 TGTATCGATACATTCTACAAA
344822 TGTATCGATACATTCTACAAA
1 TGTATCGATACATTCTACAAA
*
344843 TGTATCAATACATT
1 TGTATCGATACATT
344857 TGAAATTTTT
Statistics
Matches: 51, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
21 39 0.76
22 12 0.24
ACGTcount: A:0.37, C:0.17, G:0.12, T:0.35
Consensus pattern (21 bp):
TGTATCGATACATTCTACAAA
Found at i:347480 original size:20 final size:20
Alignment explanation
Indices: 347435--347480 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 20
347425 GTTAACAGCC
*
347435 CATGATTCATGCATTTTGAG
1 CATGTTTCATGCATTTTGAG
347455 CTATGTTTCATGCA-TTTGCAG
1 C-ATGTTTCATGCATTTTG-AG
347476 CATGT
1 CATGT
347481 CCAGCACCTT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
20 9 0.39
21 14 0.61
ACGTcount: A:0.22, C:0.17, G:0.20, T:0.41
Consensus pattern (20 bp):
CATGTTTCATGCATTTTGAG
Found at i:360547 original size:10 final size:10
Alignment explanation
Indices: 360532--360584 Score: 72
Period size: 10 Copynumber: 5.3 Consensus size: 10
360522 TCCTCCGCAA
360532 AAAAAAAAAC
1 AAAAAAAAAC
360542 -AAAAAAAAC
1 AAAAAAAAAC
*
360551 AACAAAAAAC
1 AAAAAAAAAC
*
360561 AACAAAAAAC
1 AAAAAAAAAC
360571 AAAAAAAAAAC
1 -AAAAAAAAAC
360582 AAA
1 AAA
360585 CAACAAAAAG
Statistics
Matches: 39, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
9 9 0.23
10 21 0.54
11 9 0.23
ACGTcount: A:0.87, C:0.13, G:0.00, T:0.00
Consensus pattern (10 bp):
AAAAAAAAAC
Found at i:360567 original size:28 final size:28
Alignment explanation
Indices: 360535--360590 Score: 94
Period size: 29 Copynumber: 2.0 Consensus size: 28
360525 TCCGCAAAAA
360535 AAAAAACAAAAAAAACAACAAAAAACAAC
1 AAAAAACAAAAAAAA-AACAAAAAACAAC
*
360564 AAAAAACAAAAAAAAAACAAACAACAA
1 AAAAAACAAAAAAAAAACAAAAAACAA
360591 AAAGGGTCCA
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
28 11 0.42
29 15 0.58
ACGTcount: A:0.84, C:0.16, G:0.00, T:0.00
Consensus pattern (28 bp):
AAAAAACAAAAAAAAAACAAAAAACAAC
Found at i:361659 original size:37 final size:37
Alignment explanation
Indices: 361617--361701 Score: 161
Period size: 37 Copynumber: 2.3 Consensus size: 37
361607 TTCCACAATC
361617 ATGCATTTGTGACATTCATAACATTTCATTTTGCATG
1 ATGCATTTGTGACATTCATAACATTTCATTTTGCATG
*
361654 ATGCATTTGTGGCATTCATAACATTTCATTTTGCATG
1 ATGCATTTGTGACATTCATAACATTTCATTTTGCATG
361691 ATGCATTTGTG
1 ATGCATTTGTG
361702 CTTCATCTTT
Statistics
Matches: 47, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
37 47 1.00
ACGTcount: A:0.25, C:0.15, G:0.16, T:0.44
Consensus pattern (37 bp):
ATGCATTTGTGACATTCATAACATTTCATTTTGCATG
Found at i:362172 original size:27 final size:27
Alignment explanation
Indices: 362064--362270 Score: 177
Period size: 28 Copynumber: 7.4 Consensus size: 27
362054 CCTTACTTTC
** * *
362064 CAAAGCCCATGAGTTAGTGGCAACCCT
1 CAAAGCCCACAAGTCAGTGGCAACCTT
* * *
362091 AAGAAGCCCACAAGTCAGTGGCATCTTTT
1 CA-AAGCCCACAAGTCAGTGGCAAC-CTT
362120 CAAAGCCCACAAGTCAGTGGCAACCTT
1 CAAAGCCCACAAGTCAGTGGCAACCTT
* *
362147 CAGAAGCCCATAAGTCAATGGC-ACCTTTT
1 CA-AAGCCCACAAGTCAGTGGCAACC--TT
*
362176 CAAAGCTCACAAGTCAGTGGCAACCTT
1 CAAAGCCCACAAGTCAGTGGCAACCTT
*
362203 CAAAGCCCTA-AAGGCAGTGGCAACCTT
1 CAAAGCCC-ACAAGTCAGTGGCAACCTT
* **
362230 CAAAAGCGCACAAGTTGGT-GCAACCCTTT
1 C-AAAGCCCACAAGTCAGTGGCAA-CC-TT
362259 CAAAAGCCCACA
1 C-AAAGCCCACA
362271 CGAGTTGGTG
Statistics
Matches: 147, Mismatches: 22, Indels: 20
0.78 0.12 0.11
Matches are distributed among these distances:
27 39 0.27
28 86 0.59
29 22 0.15
ACGTcount: A:0.33, C:0.29, G:0.19, T:0.18
Consensus pattern (27 bp):
CAAAGCCCACAAGTCAGTGGCAACCTT
Found at i:362229 original size:56 final size:56
Alignment explanation
Indices: 362059--362229 Score: 211
Period size: 56 Copynumber: 3.1 Consensus size: 56
362049 ACATTCCTTA
* ** * * * *
362059 CTTTCCAAAGCCCATGAGTTAGTGGCAACCCTAAGAAGCCCACAAGTCAGTGGCAT
1 CTTTTCAAAGCCCACAAGTCAGTGGCAACCTTCAGAAGCCCACAAGTCAGTGGCAC
* *
362115 CTTTTCAAAGCCCACAAGTCAGTGGCAACCTTCAGAAGCCCATAAGTCAATGGCAC
1 CTTTTCAAAGCCCACAAGTCAGTGGCAACCTTCAGAAGCCCACAAGTCAGTGGCAC
* *
362171 CTTTTCAAAGCTCACAAGTCAGTGGCAACCTTCA-AAGCCCTA-AAGGCAGTGGCAAC
1 CTTTTCAAAGCCCACAAGTCAGTGGCAACCTTCAGAAGCCC-ACAAGTCAGTGGC-AC
362227 CTT
1 CTT
362230 CAAAAGCGCA
Statistics
Matches: 101, Mismatches: 12, Indels: 4
0.86 0.10 0.03
Matches are distributed among these distances:
55 15 0.15
56 86 0.85
ACGTcount: A:0.31, C:0.29, G:0.19, T:0.20
Consensus pattern (56 bp):
CTTTTCAAAGCCCACAAGTCAGTGGCAACCTTCAGAAGCCCACAAGTCAGTGGCAC
Found at i:362260 original size:83 final size:84
Alignment explanation
Indices: 362094--362270 Score: 207
Period size: 83 Copynumber: 2.1 Consensus size: 84
362084 CAACCCTAAG
* * * * *
362094 AAGCCCACAAGTCAGTGGCATCTTTTCAAAGCCCACAAGTCAGTGGCAACCTTCAGAAGCCCATA
1 AAGCCCACAAGTCAGTGGCAACTCTTCAAAGCCCACAAGGCAGTGGCAACCTTCAAAAGCCCACA
*
362159 AGTCAATGGCACCTTTTCA
66 AGTCAATGGCACCCTTTCA
* *
362178 AAGCTCACAAGTCAGTGGCAAC-CTTCAAAGCCCTA-AAGGCAGTGGCAACCTTCAAAAGCGCAC
1 AAGCCCACAAGTCAGTGGCAACTCTTCAAAGCCC-ACAAGGCAGTGGCAACCTTCAAAAGCCCAC
***
362241 AAGTTGGT-GCAACCCTTTCAA
65 AAGTCAATGGC-ACCCTTTC-A
362262 AAGCCCACA
1 AAGCCCACA
362271 CGAGTTGGTG
Statistics
Matches: 78, Mismatches: 12, Indels: 6
0.81 0.12 0.06
Matches are distributed among these distances:
82 2 0.03
83 46 0.59
84 30 0.38
ACGTcount: A:0.33, C:0.30, G:0.19, T:0.19
Consensus pattern (84 bp):
AAGCCCACAAGTCAGTGGCAACTCTTCAAAGCCCACAAGGCAGTGGCAACCTTCAAAAGCCCACA
AGTCAATGGCACCCTTTCA
Found at i:367540 original size:20 final size:20
Alignment explanation
Indices: 367515--367564 Score: 100
Period size: 20 Copynumber: 2.5 Consensus size: 20
367505 TTGATATAAT
367515 GTATCGATACGTAAAAAAAA
1 GTATCGATACGTAAAAAAAA
367535 GTATCGATACGTAAAAAAAA
1 GTATCGATACGTAAAAAAAA
367555 GTATCGATAC
1 GTATCGATAC
367565 ATTGTGCCCA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 30 1.00
ACGTcount: A:0.50, C:0.12, G:0.16, T:0.22
Consensus pattern (20 bp):
GTATCGATACGTAAAAAAAA
Found at i:368607 original size:15 final size:15
Alignment explanation
Indices: 368584--368645 Score: 54
Period size: 15 Copynumber: 4.1 Consensus size: 15
368574 ATTTGATATT
*
368584 AATAAAAAAATAAAA
1 AATATAAAAATAAAA
368599 AATATAAAATATAAAA
1 AATATAAAA-ATAAAA
* *
368615 CAAGA-AAATATAAAA
1 -AATATAAAAATAAAA
* *
368630 AATATATACATAAAA
1 AATATAAAAATAAAA
368645 A
1 A
368646 TAGCGATAAT
Statistics
Matches: 38, Mismatches: 6, Indels: 6
0.76 0.12 0.12
Matches are distributed among these distances:
14 3 0.08
15 23 0.61
16 9 0.24
17 3 0.08
ACGTcount: A:0.76, C:0.03, G:0.02, T:0.19
Consensus pattern (15 bp):
AATATAAAAATAAAA
Found at i:368609 original size:22 final size:22
Alignment explanation
Indices: 368584--368629 Score: 58
Period size: 22 Copynumber: 2.1 Consensus size: 22
368574 ATTTGATATT
368584 AATA-AAAAAATAAAAAATATAA
1 AATATAAAAAA-AAAAAATATAA
* *
368606 AATATAAAACAAGAAAATATAA
1 AATATAAAAAAAAAAAATATAA
368628 AA
1 AA
368630 AATATATACA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
22 16 0.76
23 5 0.24
ACGTcount: A:0.78, C:0.02, G:0.02, T:0.17
Consensus pattern (22 bp):
AATATAAAAAAAAAAAATATAA
Found at i:368612 original size:24 final size:24
Alignment explanation
Indices: 368585--368635 Score: 66
Period size: 24 Copynumber: 2.1 Consensus size: 24
368575 TTTGATATTA
* *
368585 ATAAAAAAATAAAAAATATAAAAT
1 ATAAAAAAAGAAAAAATAAAAAAT
* *
368609 ATAAAACAAGAAAATATAAAAAAT
1 ATAAAAAAAGAAAAAATAAAAAAT
368633 ATA
1 ATA
368636 TACATAAAAA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.76, C:0.02, G:0.02, T:0.20
Consensus pattern (24 bp):
ATAAAAAAAGAAAAAATAAAAAAT
Found at i:378485 original size:52 final size:52
Alignment explanation
Indices: 378335--378487 Score: 175
Period size: 52 Copynumber: 2.9 Consensus size: 52
378325 GGTGACAAAT
** * * * * *
378335 GTGCTAACGTGCTGCTTCAAGGCCATCGATATTAGACTTAAAGATGACAAAG
1 GTGCTAATATGCTGATTCAAGGCCATCGATATTGGACTTAAAAAAGAAAAAG
* *
378387 GTGCTAATATGCTGATTCAAGGCTAGT-GATATTGGACTTAAGAAAGAAAAAG
1 GTGCTAATATGCTGATTCAAGGCCA-TCGATATTGGACTTAAAAAAGAAAAAG
* *
378439 GTG-TCAATATGCTGATTTAAGGCCATCGACATTGGACTTAAAAAAGAAA
1 GTGCT-AATATGCTGATTCAAGGCCATCGATATTGGACTTAAAAAAGAAA
378488 TGGTTTGACA
Statistics
Matches: 85, Mismatches: 13, Indels: 6
0.82 0.12 0.06
Matches are distributed among these distances:
51 2 0.02
52 82 0.96
53 1 0.01
ACGTcount: A:0.37, C:0.14, G:0.23, T:0.26
Consensus pattern (52 bp):
GTGCTAATATGCTGATTCAAGGCCATCGATATTGGACTTAAAAAAGAAAAAG
Found at i:378585 original size:32 final size:31
Alignment explanation
Indices: 378547--378730 Score: 224
Period size: 32 Copynumber: 5.7 Consensus size: 31
378537 TAGAAGAAGA
* *
378547 TGCCACCATCTTATGTGGGCTTTTGAAAAGGT
1 TGCCACCAGCTTGTGTGGGC-TTTGAAAAGGT
* * *
378579 TGCCACCAACTTGTGTTGGCTTTTAAAGAGGCT
1 TGCCACCAGCTTGTGTGGGCTTTGAAA-AGG-T
* * *
378612 TGCCACTAGCTTTTGCGGGCTTTGAAAAAGGT
1 TGCCACCAGCTTGTGTGGGCTTTG-AAAAGGT
*
378644 TGCCACCAGCTTGTGTGGGCTTTAAAGAAGGT
1 TGCCACCAGCTTGTGTGGGCTTTGAA-AAGGT
*
378676 TGCCACCAGCTTGTGTGGGCTTTAAAGAAGGT
1 TGCCACCAGCTTGTGTGGGCTTTGAA-AAGGT
378708 TGCCACCAGCTTGTGTGGGCTTT
1 TGCCACCAGCTTGTGTGGGCTTT
378731 TGAGAAAAGT
Statistics
Matches: 134, Mismatches: 14, Indels: 8
0.86 0.09 0.05
Matches are distributed among these distances:
31 8 0.06
32 101 0.75
33 22 0.16
34 3 0.02
ACGTcount: A:0.20, C:0.20, G:0.28, T:0.32
Consensus pattern (31 bp):
TGCCACCAGCTTGTGTGGGCTTTGAAAAGGT
Found at i:378733 original size:97 final size:98
Alignment explanation
Indices: 378547--378739 Score: 259
Period size: 97 Copynumber: 2.0 Consensus size: 98
378537 TAGAAGAAGA
* * *
378547 TGCCACCATCTTATGTGGGCTTTTGAAAAGGTTGCCACCAACTTGTGTTGGCTTTTAAAGAGGCT
1 TGCCACCAGCTTATGTGGGCTTTTAAAAAGGTTGCCACCAACTTGTGTGGGCTTTTAAAGAGGCT
* *
378612 TGCCACTAGCTTTTGCGGGCTTTGA-AAAAGGT
66 TGCCACCAGCTTGTGCGGGCTTTGAGAAAAGGT
* *
378644 TGCCACCAGCTTGTGTGGGC-TTTAAAGAAGGTTGCCACCAGCTTGTGTGGGC-TTTAAAGAAGG
1 TGCCACCAGCTTATGTGGGCTTTTAAA-AAGGTTGCCACCAACTTGTGTGGGCTTTTAAAG-AGG
*
378707 -TTGCCACCAGCTTGTGTGGGCTTTTGAGAAAAG
64 CTTGCCACCAGCTTGTGCGGGC-TTTGAGAAAAG
378740 TGTCTCCACT
Statistics
Matches: 84, Mismatches: 8, Indels: 7
0.85 0.08 0.07
Matches are distributed among these distances:
96 30 0.36
97 49 0.58
98 5 0.06
ACGTcount: A:0.22, C:0.19, G:0.28, T:0.31
Consensus pattern (98 bp):
TGCCACCAGCTTATGTGGGCTTTTAAAAAGGTTGCCACCAACTTGTGTGGGCTTTTAAAGAGGCT
TGCCACCAGCTTGTGCGGGCTTTGAGAAAAGGT
Found at i:378922 original size:28 final size:28
Alignment explanation
Indices: 378863--378932 Score: 97
Period size: 28 Copynumber: 2.5 Consensus size: 28
378853 TTATATACAG
*
378863 AAGGTGTCACTAA-TTATGGACTTCGAA
1 AAGGTGCCACTAACTTATGGACTTCGAA
*
378890 AAGGTGCCACTAACTTTTGGACTTCGAA
1 AAGGTGCCACTAACTTATGGACTTCGAA
* *
378918 GAGGTGCCACAAACT
1 AAGGTGCCACTAACT
378933 AGTGGGCTTT
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
27 12 0.32
28 26 0.68
ACGTcount: A:0.31, C:0.20, G:0.23, T:0.26
Consensus pattern (28 bp):
AAGGTGCCACTAACTTATGGACTTCGAA
Found at i:380406 original size:79 final size:79
Alignment explanation
Indices: 380199--380530 Score: 423
Period size: 79 Copynumber: 4.2 Consensus size: 79
380189 GATAATAACT
* * * * * *
380199 GGGGTTAGAGTATCCTCTCAAAAATAATGGGGTTGGAGTATCCCCGATTGTGAAAAATTGATGAT
1 GGGGTTAGAGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCCCGACTATGAAAAATTGATGTT
380264 TTAGAAATAAAATC
66 TTAGAAATAAAATC
* *
380278 AGGATT-GAGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCCCGACTATGAAAAATTGATGTT
1 GGGGTTAGAGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCCCGACTATGAAAAATTGATGTT
*
380342 TTAGAAATAAAACC
66 TTAGAAATAAAATC
* * * * *
380356 GGGGTTGGAGTATCCCCTCGGAAATAACGGGGTTAGAGTATCCCCAACTATGAAAAATTTATGTT
1 GGGGTTAGAGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCCCGACTATGAAAAATTGATGTT
*
380421 GTAGAAATAAAATC
66 TTAGAAATAAAATC
* * * ** * * * *
380435 GAGGTTGGAGTGTCCCCTCGAAAATAATAGGGTTGGAGTATCCCCGATTGTGAAAAGTTGGTGTT
1 GGGGTTAGAGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCCCGACTATGAAAAATTGATGTT
*
380500 TTGGAAATAAAATC
66 TTAGAAATAAAATC
*
380514 GGAGTTAGAGTATCCCC
1 GGGGTTAGAGTATCCCC
380531 AATTATGGAA
Statistics
Matches: 217, Mismatches: 35, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
78 69 0.32
79 148 0.68
ACGTcount: A:0.33, C:0.14, G:0.25, T:0.27
Consensus pattern (79 bp):
GGGGTTAGAGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCCCGACTATGAAAAATTGATGTT
TTAGAAATAAAATC
Found at i:380530 original size:51 final size:50
Alignment explanation
Indices: 380470--380631 Score: 180
Period size: 51 Copynumber: 3.2 Consensus size: 50
380460 AATAGGGTTG
* *
380470 GAGTATCCCCGATTGTGAAAAGTTGGTGTTTTGGAAATAAAATCGGAGTTA
1 GAGTATCCCCGATTATGAAAA-TCGGTGTTTTGGAAATAAAATCGGAGTTA
* * * *
380521 GAGTATCCCCAATTATGGAAAATGGGTGTTTTAGAAATAAAATCGGAGTTG
1 GAGTATCCCCGATTAT-GAAAATCGGTGTTTTGGAAATAAAATCGGAGTTA
** * * * * *
380572 GAGTATCCCCGATTAAAAAAAATCGATGTTTTGGAAATGAAACCGGAATTT
1 GAGTATCCCCGATT-ATGAAAATCGGTGTTTTGGAAATAAAATCGGAGTTA
380623 GAGTATCCC
1 GAGTATCCC
380632 TGAGATGAAA
Statistics
Matches: 94, Mismatches: 15, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
51 88 0.94
52 6 0.06
ACGTcount: A:0.35, C:0.12, G:0.24, T:0.29
Consensus pattern (50 bp):
GAGTATCCCCGATTATGAAAATCGGTGTTTTGGAAATAAAATCGGAGTTA
Found at i:382960 original size:20 final size:20
Alignment explanation
Indices: 382935--382973 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
382925 AAAATGCCTG
*
382935 AATGTATCGATACATTGTAA
1 AATGTATCGATACAATGTAA
382955 AATGTATCGATACAATGTA
1 AATGTATCGATACAATGTA
382974 TCGATACAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.41, C:0.10, G:0.15, T:0.33
Consensus pattern (20 bp):
AATGTATCGATACAATGTAA
Found at i:382971 original size:13 final size:13
Alignment explanation
Indices: 382955--382982 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
382945 TACATTGTAA
382955 AATGTATCGATAC
1 AATGTATCGATAC
382968 AATGTATCGATAC
1 AATGTATCGATAC
382981 AA
1 AA
382983 ATTGTGAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.43, C:0.14, G:0.14, T:0.29
Consensus pattern (13 bp):
AATGTATCGATAC
Found at i:383409 original size:52 final size:52
Alignment explanation
Indices: 383301--383437 Score: 184
Period size: 52 Copynumber: 2.6 Consensus size: 52
383291 GGTGTCTACA
* * * **
383301 ATGCTGATTCAAGGCCAACAATATTGGGCTTAAAGGTGACAAAGGTTCCAAG
1 ATGCTGATTCAAGGCCAACGATATTGGACTTAAAGATGACAAAGGCACCAAG
* * *
383353 ATGCTGCTTTAAGGCCAACGATATTGGACTTAAAGATGACAAAGGCACCAAT
1 ATGCTGATTCAAGGCCAACGATATTGGACTTAAAGATGACAAAGGCACCAAG
* *
383405 ATGCTGATTCAAGGTCAGCGATATTGGACTTAA
1 ATGCTGATTCAAGGCCAACGATATTGGACTTAA
383438 GAAAAAAAAG
Statistics
Matches: 73, Mismatches: 12, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
52 73 1.00
ACGTcount: A:0.34, C:0.18, G:0.23, T:0.25
Consensus pattern (52 bp):
ATGCTGATTCAAGGCCAACGATATTGGACTTAAAGATGACAAAGGCACCAAG
Found at i:383637 original size:31 final size:33
Alignment explanation
Indices: 383602--383673 Score: 105
Period size: 31 Copynumber: 2.3 Consensus size: 33
383592 CCAACTTTTA
*
383602 TGGGCTTTTAAAG-AGGTTGCCACCA-CTTGTG
1 TGGGCTTTTAAAGAAGATTGCCACCAGCTTGTG
*
383633 TGGGC-TTTAAGGAAGATTGCCACCAGCTTGTG
1 TGGGCTTTTAAAGAAGATTGCCACCAGCTTGTG
383665 TGGGCTTTT
1 TGGGCTTTT
383674 GAGAAAGGTT
Statistics
Matches: 36, Mismatches: 2, Indels: 4
0.86 0.05 0.10
Matches are distributed among these distances:
30 6 0.17
31 16 0.44
32 11 0.31
33 3 0.08
ACGTcount: A:0.18, C:0.18, G:0.31, T:0.33
Consensus pattern (33 bp):
TGGGCTTTTAAAGAAGATTGCCACCAGCTTGTG
Found at i:383904 original size:28 final size:28
Alignment explanation
Indices: 383857--383923 Score: 75
Period size: 28 Copynumber: 2.4 Consensus size: 28
383847 TATACTATTG
*
383857 GTGCCACTGA-TTGTGAACTTCAAAAAA
1 GTGCCACTAACTTGTGAACTTCAAAAAA
* * *
383884 GTGCCACTAACTTGT-AGACTTCGAAGAG
1 GTGCCACTAACTTGTGA-ACTTCAAAAAA
383912 GTGCCACTAACT
1 GTGCCACTAACT
383924 AGTGGGCTTT
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
27 10 0.29
28 24 0.71
ACGTcount: A:0.31, C:0.22, G:0.21, T:0.25
Consensus pattern (28 bp):
GTGCCACTAACTTGTGAACTTCAAAAAA
Found at i:384386 original size:52 final size:52
Alignment explanation
Indices: 384273--384397 Score: 133
Period size: 52 Copynumber: 2.4 Consensus size: 52
384263 ATAGAGGTGG
* * * * * **
384273 CAATATGCTGATTCAAAGCTAGCGATATTTGGCTTAATGGTGACAAAGATGC
1 CAATATGCTGATTCAAGGCCAGCGATATTTGACTTAAAGATGACAAAGACAC
** * * *
384325 CAACGTGCTGCTTCAAGGCCAGCGATATTTGACTTAAAGATGGCAAAGGCAC
1 CAATATGCTGATTCAAGGCCAGCGATATTTGACTTAAAGATGACAAAGACAC
*
384377 CAATATGCTGATTAAAGGCCA
1 CAATATGCTGATTCAAGGCCA
384398 ATGATACTAG
Statistics
Matches: 57, Mismatches: 16, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
52 57 1.00
ACGTcount: A:0.33, C:0.19, G:0.23, T:0.25
Consensus pattern (52 bp):
CAATATGCTGATTCAAGGCCAGCGATATTTGACTTAAAGATGACAAAGACAC
Found at i:384616 original size:32 final size:34
Alignment explanation
Indices: 384575--384655 Score: 105
Period size: 32 Copynumber: 2.5 Consensus size: 34
384565 TACCATCGAT
* * *
384575 TTGTTTGGGCTTTTGGAG-AGGTTGCAAGC-AGC
1 TTGTGTGGGCTTTTGAAGAAGGTTGCAACCAAGC
*
384607 TTGTGTGGGC-TTTGAAGAAGGTTGCCACCAAGC
1 TTGTGTGGGCTTTTGAAGAAGGTTGCAACCAAGC
384640 TTGTGTGGGCTTTTGA
1 TTGTGTGGGCTTTTGA
384656 GAAAGATTCT
Statistics
Matches: 42, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
31 6 0.14
32 18 0.43
33 13 0.31
34 5 0.12
ACGTcount: A:0.16, C:0.14, G:0.36, T:0.35
Consensus pattern (34 bp):
TTGTGTGGGCTTTTGAAGAAGGTTGCAACCAAGC
Found at i:384883 original size:28 final size:28
Alignment explanation
Indices: 384843--384904 Score: 88
Period size: 28 Copynumber: 2.2 Consensus size: 28
384833 ATGCCACTGA
*
384843 TTGTGGACTTCGAAAAGGTACCGCTAAC
1 TTGTGGACTTCGAAAAGGTACCACTAAC
* *
384871 TTGTGGACTTCGAAGAGGTGCCACTAAC
1 TTGTGGACTTCGAAAAGGTACCACTAAC
*
384899 TAGTGG
1 TTGTGG
384905 GCTTTGAGAA
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 30 1.00
ACGTcount: A:0.26, C:0.19, G:0.29, T:0.26
Consensus pattern (28 bp):
TTGTGGACTTCGAAAAGGTACCACTAAC
Found at i:385302 original size:52 final size:52
Alignment explanation
Indices: 385224--385325 Score: 141
Period size: 52 Copynumber: 2.0 Consensus size: 52
385214 TTGAAAAGAA
* * *
385224 TGATAAAGTTGCTAATATGCTGATTCAAAGCCAACAACATTGGGCTTAAAGG
1 TGATAAAGGTGCCAATATGCTGATTCAAAGCCAACAACATTGGACTTAAAGG
* * * *
385276 TGATAAAGGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAA
1 TGATAAAGGTGCCAATATGCTGATTCAAAGCCAACAACATTGGACTTAAA
385326 AATGAAATGG
Statistics
Matches: 43, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
52 43 1.00
ACGTcount: A:0.34, C:0.17, G:0.24, T:0.25
Consensus pattern (52 bp):
TGATAAAGGTGCCAATATGCTGATTCAAAGCCAACAACATTGGACTTAAAGG
Found at i:385476 original size:32 final size:32
Alignment explanation
Indices: 385440--385542 Score: 127
Period size: 32 Copynumber: 3.2 Consensus size: 32
385430 TAACTTGTGA
*
385440 GGGCTTTTAAAG-AGGTTGCCACCAGCTTATTT
1 GGGC-TTTAAAGAAGGTTGCCACCAGCTTATGT
* * * *
385472 GGGCTTTGAAGAAAGTTGTCACCAGCTTGTGT
1 GGGCTTTAAAGAAGGTTGCCACCAGCTTATGT
*
385504 GGGCTTTAAAGAAGGTTGCCACCAGCTTGTGT
1 GGGCTTTAAAGAAGGTTGCCACCAGCTTATGT
*
385536 GAGCTTT
1 GGGCTTT
385543 TGAGAAAGGT
Statistics
Matches: 61, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
31 6 0.10
32 55 0.90
ACGTcount: A:0.21, C:0.17, G:0.29, T:0.32
Consensus pattern (32 bp):
GGGCTTTAAAGAAGGTTGCCACCAGCTTATGT
Found at i:386163 original size:61 final size:59
Alignment explanation
Indices: 386003--386165 Score: 193
Period size: 61 Copynumber: 2.7 Consensus size: 59
385993 GAAGAGTTCT
* *
386003 AATATGCTAATTCAAGG-TAGCGACATTGGACTTAAGGATGCGAAGAATGGTAAAGGTGCC
1 AATATGCTAATTCAAGGCTAGCGATATTGG-CTTAAGG-TGAGAAGAATGGTAAAGGTGCC
* * * * *
386063 AATATGCTAATTCACGACCAGCAATATCGGGCTTGAAGGTGAGAAGAATGGTAAAGGTGCC
1 AATATGCTAATTCAAGGCTAGCGATAT-TGGCTT-AAGGTGAGAAGAATGGTAAAGGTGCC
*
386124 AATATGCTAATTTAAGGCTAGCGATATTGAGCTTAAAGGTGA
1 AATATGCTAATTCAAGGCTAGCGATATTG-GCTT-AAGGTGA
386166 CAAAGGGCCA
Statistics
Matches: 85, Mismatches: 14, Indels: 7
0.80 0.13 0.07
Matches are distributed among these distances:
60 16 0.19
61 63 0.74
62 6 0.07
ACGTcount: A:0.35, C:0.13, G:0.27, T:0.25
Consensus pattern (59 bp):
AATATGCTAATTCAAGGCTAGCGATATTGGCTTAAGGTGAGAAGAATGGTAAAGGTGCC
Found at i:386315 original size:52 final size:51
Alignment explanation
Indices: 386197--386322 Score: 137
Period size: 52 Copynumber: 2.4 Consensus size: 51
386187 TAAGGCTAGC
* *
386197 GATATTGGACTTAA-AGATGACAAAGGCGCCAATATACTGATTCAAGCCTAG
1 GATATTGGACTTAAGA-ATGAAAAAGGCGCCAATATACTGATTCAAGCCAAG
** * * * * *
386248 GAATATTACATTTAAGAAAGAAAAAGGTGCCAATGTACTGATTCAAGGCCAAT
1 G-ATATTGGACTTAAGAATGAAAAAGGCGCCAATATACTGATTCAA-GCCAAG
386301 GATATTGGACTTAAGAATGAAA
1 GATATTGGACTTAAGAATGAAA
386323 TGGTTTGACA
Statistics
Matches: 59, Mismatches: 13, Indels: 5
0.77 0.17 0.06
Matches are distributed among these distances:
51 1 0.02
52 52 0.88
53 6 0.10
ACGTcount: A:0.41, C:0.13, G:0.21, T:0.25
Consensus pattern (51 bp):
GATATTGGACTTAAGAATGAAAAAGGCGCCAATATACTGATTCAAGCCAAG
Found at i:386480 original size:32 final size:32
Alignment explanation
Indices: 386439--386515 Score: 109
Period size: 32 Copynumber: 2.4 Consensus size: 32
386429 GGCTTTTGCA
* *
386439 TTGAAGAAGGTTGCCACCGAGTTGTATGGGCT
1 TTGAAGAAGGTTGCCACCAACTTGTATGGGCT
*
386471 TTGAAGAAGGTTGCCACCAACTTGTGTGGGCT
1 TTGAAGAAGGTTGCCACCAACTTGTATGGGCT
*
386503 TTTAAGAAAGGTT
1 TTGAAG-AAGGTT
386516 TCTCCACTGG
Statistics
Matches: 40, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
32 34 0.85
33 6 0.15
ACGTcount: A:0.25, C:0.14, G:0.31, T:0.30
Consensus pattern (32 bp):
TTGAAGAAGGTTGCCACCAACTTGTATGGGCT
Found at i:387148 original size:51 final size:52
Alignment explanation
Indices: 387066--387218 Score: 157
Period size: 51 Copynumber: 3.0 Consensus size: 52
387056 ATGGAAAAAA
* * * * * * *
387066 ATGATAAAGGTGCCAATATGCTAATTTAAGGCTAGCTATATTGGGCTTAAAG
1 ATGACAAAGGTGCCAACATGCTAATTCAAGGCCAACGATATTGGACTTAAAG
* *
387118 GTGACAAAGGTGCC-ACATGCTACTTCAAGGCCAACGATATTGGACTTAAAG
1 ATGACAAAGGTGCCAACATGCTAATTCAAGGCCAACGATATTGGACTTAAAG
* * * * *
387169 ATGACAAAGGCG-CTACTATGTTGATTCAAGGCCAATGATATTGGACTTAA
1 ATGACAAAGGTGCCAAC-ATGCTAATTCAAGGCCAACGATATTGGACTTAA
387219 GAAAGAAAAA
Statistics
Matches: 84, Mismatches: 15, Indels: 4
0.82 0.15 0.04
Matches are distributed among these distances:
50 1 0.01
51 42 0.50
52 41 0.49
ACGTcount: A:0.34, C:0.16, G:0.23, T:0.27
Consensus pattern (52 bp):
ATGACAAAGGTGCCAACATGCTAATTCAAGGCCAACGATATTGGACTTAAAG
Found at i:387211 original size:52 final size:51
Alignment explanation
Indices: 387103--387218 Score: 153
Period size: 52 Copynumber: 2.3 Consensus size: 51
387093 AAGGCTAGCT
* * *
387103 ATATTGGGCTTAAAGGTGACAAAGGTGCCACATGCTACTTCAAGGCCAACG
1 ATATTGGACTTAAAGATGACAAAGGCGCCACATGCTACTTCAAGGCCAACG
* * *
387154 ATATTGGACTTAAAGATGACAAAGGCGCTACTATGTTGA-TTCAAGGCCAATG
1 ATATTGGACTTAAAGATGACAAAGGCGCCAC-ATGCT-ACTTCAAGGCCAACG
387206 ATATTGGACTTAA
1 ATATTGGACTTAA
387219 GAAAGAAAAA
Statistics
Matches: 57, Mismatches: 6, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
51 27 0.47
52 29 0.51
53 1 0.02
ACGTcount: A:0.34, C:0.17, G:0.23, T:0.26
Consensus pattern (51 bp):
ATATTGGACTTAAAGATGACAAAGGCGCCACATGCTACTTCAAGGCCAACG
Found at i:387246 original size:52 final size:52
Alignment explanation
Indices: 387129--387278 Score: 126
Period size: 52 Copynumber: 2.9 Consensus size: 52
387119 TGACAAAGGT
* * *
387129 GCCAC-ATGCT-ACTTCAAGGCCAACGATATTGGACTTAA-AGATGACAAAGGC
1 GCCACTATGCTGA-TTCAAGGCCAACGATATTGGACTTAAGA-AAGAAAAAAGC
* * * *
387180 GCTACTATGTTGATTCAAGGCCAATGATATTGGACTTAAGAAAGAAAAAAGT
1 GCCACTATGCTGATTCAAGGCCAACGATATTGGACTTAAGAAAGAAAAAAGC
* * ** * * * *
387232 GCCATTGTGCTGATTTGAGGCTAACAACATTGGACTTAAGACAGAAA
1 GCCACTATGCTGATTCAAGGCCAACGATATTGGACTTAAGAAAGAAA
387279 TGGCTTGACA
Statistics
Matches: 78, Mismatches: 18, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
51 4 0.05
52 72 0.92
53 2 0.03
ACGTcount: A:0.37, C:0.17, G:0.22, T:0.24
Consensus pattern (52 bp):
GCCACTATGCTGATTCAAGGCCAACGATATTGGACTTAAGAAAGAAAAAAGC
Found at i:387419 original size:32 final size:33
Alignment explanation
Indices: 387378--387465 Score: 92
Period size: 32 Copynumber: 2.8 Consensus size: 33
387368 GTAGCCACTG
* *
387378 ACTTTTGTGGGCTTTTAAAG-AGGTCACCACCA
1 ACTTGTGTGGGCTTTTAAAGAAAGTCACCACCA
* **
387410 ACTTGTGTGGGC-TTTGAAGAAAGTTGCCACCA
1 ACTTGTGTGGGCTTTTAAAGAAAGTCACCACCA
* *
387442 GCTTGTGTGGGC-TTTGAAGAAAGT
1 ACTTGTGTGGGCTTTTAAAGAAAGT
387466 TGCCACTAGC
Statistics
Matches: 49, Mismatches: 6, Indels: 2
0.86 0.11 0.04
Matches are distributed among these distances:
31 6 0.12
32 43 0.88
ACGTcount: A:0.24, C:0.17, G:0.28, T:0.31
Consensus pattern (33 bp):
ACTTGTGTGGGCTTTTAAAGAAAGTCACCACCA
Found at i:387466 original size:32 final size:32
Alignment explanation
Indices: 387404--387477 Score: 130
Period size: 32 Copynumber: 2.3 Consensus size: 32
387394 AAAGAGGTCA
*
387404 CCACCAACTTGTGTGGGCTTTGAAGAAAGTTG
1 CCACCAGCTTGTGTGGGCTTTGAAGAAAGTTG
387436 CCACCAGCTTGTGTGGGCTTTGAAGAAAGTTG
1 CCACCAGCTTGTGTGGGCTTTGAAGAAAGTTG
*
387468 CCACTAGCTT
1 CCACCAGCTT
387478 CTTAGGGATA
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
32 40 1.00
ACGTcount: A:0.23, C:0.22, G:0.27, T:0.28
Consensus pattern (32 bp):
CCACCAGCTTGTGTGGGCTTTGAAGAAAGTTG
Found at i:388167 original size:52 final size:52
Alignment explanation
Indices: 388049--388254 Score: 209
Period size: 52 Copynumber: 4.0 Consensus size: 52
388039 GATGAGAAAA
*
388049 ATGATAAAGGTGCCAATATGCTGATTCAAGGCTAGCGATATT-GAGCTTAAAGG
1 ATGACAAAGGTGCCAATATGCTGATTCAAGGCTAGCGATATTAGA-CTT-AAGG
** ** * *
388102 -TGACAAAACTGCCAACGTGCTGCTTCAAGGCCAGCGATATTAGACTTAAGG
1 ATGACAAAGGTGCCAATATGCTGATTCAAGGCTAGCGATATTAGACTTAAGG
* * *
388153 ATGACAAAGGTGCCATTATGCTGATTCAAGGCTAGTGATATTAGACTTAAGA
1 ATGACAAAGGTGCCAATATGCTGATTCAAGGCTAGCGATATTAGACTTAAGG
* * * * * * * * *
388205 AAGAAAAAGATGCCAATGTGTTGATTCAAGGGTAGTGACATTGGACTTAA
1 ATGACAAAGGTGCCAATATGCTGATTCAAGGCTAGCGATATTAGACTTAA
388255 CAAAGAAATG
Statistics
Matches: 126, Mismatches: 25, Indels: 5
0.81 0.16 0.03
Matches are distributed among these distances:
51 4 0.03
52 120 0.95
53 2 0.02
ACGTcount: A:0.34, C:0.15, G:0.25, T:0.26
Consensus pattern (52 bp):
ATGACAAAGGTGCCAATATGCTGATTCAAGGCTAGCGATATTAGACTTAAGG
Found at i:388252 original size:104 final size:104
Alignment explanation
Indices: 388049--388254 Score: 238
Period size: 104 Copynumber: 2.0 Consensus size: 104
388039 GATGAGAAAA
* ** *
388049 ATGATAAAGGTGCCAATATGCTGATTCAAGGCTAGCGATATTGAGCTTAAAGGTGACAAAACTGC
1 ATGACAAAGGTGCCAATATGCTGATTCAAGGCTAGCGATATTGAGCTTAAAGAAGACAAAAATGC
* *
388114 CAACGTGCTGCTTCAAGGCCAGCGATATTAGACTTAAGG
66 CAACGTGCTGATTCAAGGCCAGCGACATTAGACTTAAGG
* *
388153 ATGACAAAGGTGCCATTATGCTGATTCAAGGCTAGTGATATT-AGACTT-AAGAAAGA-AAAAGA
1 ATGACAAAGGTGCCAATATGCTGATTCAAGGCTAGCGATATTGAG-CTTAAAG-AAGACAAAA-A
* * ** * *
388215 TGCCAATGTGTTGATTCAAGGGTAGTGACATTGGACTTAA
63 TGCCAACGTGCTGATTCAAGGCCAGCGACATTAGACTTAA
388255 CAAAGAAATG
Statistics
Matches: 85, Mismatches: 14, Indels: 6
0.81 0.13 0.06
Matches are distributed among these distances:
103 9 0.11
104 76 0.89
ACGTcount: A:0.34, C:0.15, G:0.25, T:0.26
Consensus pattern (104 bp):
ATGACAAAGGTGCCAATATGCTGATTCAAGGCTAGCGATATTGAGCTTAAAGAAGACAAAAATGC
CAACGTGCTGATTCAAGGCCAGCGACATTAGACTTAAGG
Found at i:388346 original size:984 final size:973
Alignment explanation
Indices: 386689--389908 Score: 3738
Period size: 967 Copynumber: 3.3 Consensus size: 973
386679 TATACAACAA
*
386689 GTGCCACTAAGTTGTGGACTTCGAAGAGGTGCCACTAACTAGTGGGCTTTGAAAAGGGATTCGTG
1 GTGCCACTAACTTGTGGACTTCGAAGAGGTGCCACTAACTAGTGGGCTTTGAAAAGGGATTCGTG
* * * * * * *
386754 GTGACAATCATTTCTTGACAAAGTTTTTGACAAACATTCTCGACAAAAGTTCTAAGGCCTTACCT
66 TTGACAAACATTTCTTGACAAAGTTTCTAACAAACGTTCTCAACAAAAGTTCTAAGGCCTTACCA
* * * *
386819 CCGTAGACAGGTATTGTGGAAGGGTATGACTTCTCAAGGATTGGTGAGGGTATGATTAGTGTTTA
131 CCGTAGACAGGTGTTGTGGAAGGGTATGACTTCTCAGGGATTGGTGAGGGTATGATCAGTGTTTG
* * *
386884 GCAATGT-TCTAGTGTGCAGATTCAAGGCCTACAACATTGGACTTAAGGATGATATAAGAATGAG
196 GCGATGTGT-TAGTGTGCAGATTCAAGGCCTACAACATTAGACTTAAAGATGATATAAGAATGAG
* ** *
386948 AAAAGTGCCAATATTCTAATTCAAGGTTAGTAACTTTGGACTTAAGGATGCGAAGAATGATAAAG
260 AAAAGTGCCAATATTCTAATTCAAGGTCAGGGACATTGGACTTAAGGATGCGAAGAATGATAAAG
*
387013 GTGCCAATATGCTGATTTACGACCAGCAATATCGGGCTTGAAGATGGAAAAAAATGATAAAGGTG
325 GTGCCAATATGCTGATTTACGACCAGCAATATCGGGCTTGAAGAT-GAGAAAAATGATAAAGGTG
* * * ** *
387078 CCAATATGCTAATTTAAGGCTAGCTATATTGGGCTTAAAGGTGACAAAGGTGCC-ACATGCTACT
389 CCAATATGCTGATTCAAGGCTAGCGATATTGGGCTTAAAGGTGACAAAAATGCCAACATGCTGCT
* * * * * * *
387142 TCAAGGCCAACGATATTGGACTTAAAGATGACAAAGGCGCTACTATGTTGATTCAAGGCCAATGA
454 TCAAGGCCAGCGATATTGGACTTAAGGATGACAAAGGTGCCAATATGCTGATTCAAGGCTAATGA
* * ** * *
387207 TATTGGACTTAAGAAAGAAAAA-AGTGCCATTGTGCTGATTTGAGGCTAACAACATTGGACTTAA
519 TATT-GACTTAAGAAAGAAAAAGA-TGCCAATGTGTTGATTCAAGGCTAGCGACATTGGACTTAA
* * * * * *
387271 GACAGAAATGGCTTGACAAGTGCCTATGTGTTGATTCAAGGCCAACGACATTGCGCCTAAAAGGA
582 GAAAGAAATGGTTTGACAAGTGCCTATGAGTTGATTCAAGGCCAACGACATTGAGCTTAGAAGGA
* *
387336 GATGCTACCATCCTGTGTCGGCTTTTGAGAGGGTAGCCACTGACTTTTGTGGGCTTTTAAAGAGG
647 GATGCTACCATCTTGTGTGGGCTTTTGAGAGGGTAGCCAC-GACTTTTGTGGGCTTTTAAAGAGG
*
387401 TCACCACCAACTTGTGTGGGCTTTGAAGAAAGTTGCCACCAGCTTGTGTGGGCTTTGAAGAAAGT
711 T--CCACC--CTTGTGTGGGCTTTGAAGAAGGTTGCCACCAGCTTGTGTGGGCTTTGAAGAAAGT
* *
387466 TGCCACTAGCTTCTTAGGGATATTAAACTTCCTAGGGATGACCTGCTTATCATGCGTGTCTAACT
772 TGCC-CTA-CTTC---GGGATATTAAACTTCCTGGGGATGACATGCTTATCATGCGTGTCTAACT
* * * * *
387531 ATGAACTTGGTGCCACTGATATTAGGGGGCTTAAAAAGATTGAGTGCCATTAGCTCCTATGGGCT
832 ATGAACTTGGTGCCACCGATATTAGCGGGCTTAAAAAGATTGAGTGCCACTAGCTCGTGTGGGCT
* * **
387596 TTGGTGTCTAGCTCTTTGTAGACGAACTCTAGTGCCATCATAAATAGTTGGTGCCACTGATTGTG
897 TTGGTGTCTAGCTCTTTGTAGACGAACTCTAGTGCCATTATATATAGCAGGTGCCACTGATTGTG
**
387661 GTTTTCAAAAAG
962 GACTTCAAAAAG
* * * * * *
387673 GTGCCACTGACTTGTGCACTTCGAGGAGGTGCTC-GTGAA-TAGTGGGCTTTGAGAAGGGATTTG
1 GTGCCACTAACTTGTGGACTTCGAAGAGGTGC-CACT-AACTAGTGGGCTTTGAAAAGGGATTCG
* * * *
387736 TGTTAACGAACATTTCTTGACGAAGTTTCTAACAAACGTTCTCAACAAAAGTTCTAACG-CTTGA
64 TGTTGACAAACATTTCTTGACAAAGTTTCTAACAAACGTTCTCAACAAAAGTTCTAAGGCCTT-A
* * * *
387800 CC-CCTTTAGACAAGTGTTGTGGAAGGCTATGACTTC-CAGGGGATTGGTGAGGGTATGATTAGT
128 CCACC-GTAGACAGGTGTTGTGGAAGGGTATGACTTCTCA-GGGATTGGTGAGGGTATGATCAGT
* * *
387863 GTTTGGTGATGTGTTAGTGTGTAGATTCAAGGCCTGCAACATTAGACTTAAAGATGATATAAGAA
191 GTTTGGCGATGTGTTAGTGTGCAGATTCAAGGCCTACAACATTAGACTTAAAGATGATATAAGAA
* *
387928 TGA-AAAGAGTGCTAATATTCTCATTCAAGGTCAGGGACATTGGACTTAAGGATGCGAAGAATGA
256 TGAGAAA-AGTGCCAATATTCTAATTCAAGGTCAGGGACATTGGACTTAAGGATGCGAAGAATGA
* * * *
387992 TAAAGGTGTCAATATGCTAATTCACGACCAGTAATATCGGGCTTGAAGATGAGAAAAATGATAAA
320 TAAAGGTGCCAATATGCTGATTTACGACCAGCAATATCGGGCTTGAAGATGAGAAAAATGATAAA
* * *
388057 GGTGCCAATATGCTGATTCAAGGCTAGCGATATTGAGCTTAAAGGTGACAAAACTGCCAACGTGC
385 GGTGCCAATATGCTGATTCAAGGCTAGCGATATTGGGCTTAAAGGTGACAAAAATGCCAACATGC
* *
388122 TGCTTCAAGGCCAGCGATATTAGACTTAAGGATGACAAAGGTGCCATTATGCTGATTCAAGGCTA
450 TGCTTCAAGGCCAGCGATATTGGACTTAAGGATGACAAAGGTGCCAATATGCTGATTCAAGGCTA
* * *
388187 GTGATATTAGACTTAAGAAAGAAAAAGATGCCAATGTGTTGATTCAAGGGTAGTGACATTGGACT
515 ATGATATT-GACTTAAGAAAGAAAAAGATGCCAATGTGTTGATTCAAGGCTAGCGACATTGGACT
* * * *
388252 TAACAAAGAAATGGTTTGACAAATGCCTATGAGTTGAGTCAAAGCCAACGACATT-AGGCTTAGA
579 TAAGAAAGAAATGGTTTGACAAGTGCCTATGAGTTGATTCAAGGCCAACGACATTGA-GCTTAGA
* * *
388316 AGGAGATGTTACCATCTTGTGTGGGCTTTTGAGAGGGTTGCCACCGACTTGTGTGGGCTTTTACA
643 AGGAGATGCTACCATCTTGTGTGGGCTTTTGAGAGGGTAGCCA-CGACTTTTGTGGGCTTTT--A
*
388381 TGGAAGAAGGTTGCCACCGGCTTGTGTGGGCTTTGAAGAAGGTTGCCACCAGCTTGTGTAGGCTT
705 ---AAG-AGG-T-CCACC--CTTGTGTGGGCTTTGAAGAAGGTTGCCACCAGCTTGTGTGGGCTT
* * * *
388446 TTAAGAAAG--G---T--TTC-------T---C--CACTGGGGATGACATGCTTGTCCTGTGTGT
762 TGAAGAAAGTTGCCCTACTTCGGGATATTAAACTTC-CTGGGGATGACATGCTTATCATGCGTGT
* * * *
388492 CTAACTATGAACTTTGTGCCACCGATATTAGCGAGCTTAAAAATATTTG-GTGCCACTATCTCGT
826 CTAACTATGAACTTGGTGCCACCGATATTAGCGGGCTTAAAAAGA-TTGAGTGCCACTAGCTCGT
* * * * *
388556 GTGGCCGTTGGTGTCTAGCT-TCTCGTAGACAAACTCTAGTGCCATTATATATAGCAAGTGCCAC
890 GTGGGCTTTGGTGTCTAGCTCT-TTGTAGACGAACTCTAGTGCCATTATATATAGCAGGTGCCAC
* *
388620 TAATTGTGGGCTT-AGAAAAG
954 TGATTGTGGACTTCA-AAAAG
* *
388640 GTGCCACTAACTTGTGGACTTCGAAGAGTTGCCACTGACTAGTGGGCTTTGAAAAGGGATTCGTG
1 GTGCCACTAACTTGTGGACTTCGAAGAGGTGCCACTAACTAGTGGGCTTTGAAAAGGGATTCGTG
* *
388705 TTCACAAACATTTCTTAACAAAGTTTCTAACAAACGTTCTCAACAAAAGTTCTAAGGCCTTA-CA
66 TTGACAAACATTTCTTGACAAAGTTTCTAACAAACGTTCTCAACAAAAGTTCTAAGGCCTTACCA
* * *
388769 CCCTTAGACAGGTGTTGTGGAAGGGTATGACTTCTTAGTGATTGGTGAGGGTATGATCAGTGTTT
131 -CCGTAGACAGGTGTTGTGGAAGGGTATGACTTCTCAGGGATTGGTGAGGGTATGATCAGTGTTT
* * * * *
388834 GGTGATGTTTTAGTGTGTAGATTGAAAGCCTACAACATTAGACTTAAAGATGATATAAGAATGAG
195 GGCGATGTGTTAGTGTGCAGATTCAAGGCCTACAACATTAGACTTAAAGATGATATAAGAATGAG
* * ** * * * * *
388899 AAAAGTGCTAATATTCTAATTCATGGTCAACGACTTTGGACTTCAGGATGTGAAGAAAGATAATG
260 AAAAGTGCCAATATTCTAATTCAAGGTCAGGGACATTGGACTTAAGGATGCGAAGAATGATAAAG
* * ** *
388964 GTGCCAATATGCTGATTTACGGCTAGCAATATCGAACTTGAAGATGAGAAGAATGATAAAGGTGC
325 GTGCCAATATGCTGATTTACGACCAGCAATATCGGGCTTGAAGATGAGAAAAATGATAAAGGTGC
* * * *
389029 CAAAATGCTGATTCAAGGCCAGTGATATTGGGCTTAAAGGTGACAAAAATGCCAACATGCTGGTT
390 CAATATGCTGATTCAAGGCTAGCGATATTGGGCTTAAAGGTGACAAAAATGCCAACATGCTGCTT
* * * * *
389094 CAAGGCTAGCGATATTGGGCTGAAGGATGACAAAGGTGCCAATATGCTGATTCAAGCCTAACGAT
455 CAAGGCCAGCGATATTGGACTTAAGGATGACAAAGGTGCCAATATGCTGATTCAAGGCTAATGAT
* * *
389159 GTTGTACTTAAGAAAGAAAAAGGTGCCAATGTGCTT-ATTCAAGGCTAGCGA-ACTTGGAGTTAA
520 ATTG-ACTTAAGAAAGAAAAAGATGCCAATGTG-TTGATTCAAGGCTAGCGACA-TTGGACTTAA
* * * * *
389222 GAAAAAAATGGTTTGATAAGTGCCTATCTA-TTGATTCAAGGCCAACAACATTGAGTTTAGAAGG
582 GAAAGAAATGGTTTGACAAGTGCCTAT-GAGTTGATTCAAGGCCAACGACATTGAGCTTAGAAGG
*
389286 AGATGCTACCATCTTGTGTGGGCTTTTGAGAGAGTTA-CCTACGAC--TTGT--G----T---G-
646 AGATGCTACCATCTTGTGTGGGCTTTTGAGAG-GGTAGCC-ACGACTTTTGTGGGCTTTTAAAGA
389338 GG------CTT-T-T--GCTTTGAAGAAGGTTGCCACCAGCTTGTGTGGGCTTTTG-AGAAAGGT
709 GGTCCACCCTTGTGTGGGCTTTGAAGAAGGTTGCCACCAGCTTGTGTGGGC-TTTGAAGAAA-GT
* *
389392 T-CTCC-AC--CGGGGATATTAAACTTCCTGGGGATGACATGCTTATGATGCGTGTCTGA-TAAT
772 TGC-CCTACTTC-GGGATATTAAACTTCCTGGGGATGACATGCTTATCATGCGTGTCTAACT-AT
* * * * *
389452 AAACTTGGTGCCACCGATATTAACAGGCTTAAAAAGAAT-AGGTGCCACTAGGTCGTGTGGGCTT
834 GAACTTGGTGCCACCGATATTAGCGGGCTTAAAAAGATTGA-GTGCCACTAGCTCGTGTGGGCTT
* * * * * *
389516 CGATGTCTAGCTCCTTATAGATGAACTCTAGTGCCATTATATACAGCAGGTGCCACTGATTGTGG
898 TGGTGTCTAGCTCTTTGTAGACGAACTCTAGTGCCATTATATATAGCAGGTGCCACTGATTGTGG
*
389581 ACTTCGAAAAG
963 ACTTCAAAAAG
* * * *
389592 GTGCCACTAACTTGTGGACTTTGAAGAGGTGCCACTAACTAGTGGGCTTTGAGAAGGTATTTGTG
1 GTGCCACTAACTTGTGGACTTCGAAGAGGTGCCACTAACTAGTGGGCTTTGAAAAGGGATTCGTG
* * * *
389657 TTGACAAACATTTCTTGACGAAGTTTCTGACAAAC-TT-T-GATAAAAGTTCTAAGG-CTTGACC
66 TTGACAAACATTTCTTGACAAAGTTTCTAACAAACGTTCTCAACAAAAGTTCTAAGGCCTT-ACC
* *
389718 ACCGTAGATAGGTGTTGTGGAAGGGTACGACTTC-CAGGGGATTGGTGAGGGTATGATCAGTGTT
130 ACCGTAGACAGGTGTTGTGGAAGGGTATGACTTCTCA-GGGATTGGTGAGGGTATGATCAGTGTT
* * * *
389782 TGGCGATGTGCTAGTGTGCAGATTCAAGGCCTACAACGTTGGACTTAAAGATGATATAAGAATAA
194 TGGCGATGTGTTAGTGTGCAGATTCAAGGCCTACAACATTAGACTTAAAGATGATATAAGAATGA
* * * * * *
389847 GAAGAGTGCCAATATGCTAATTCAAGGTTAGGGACATTGGACTTTAGGATACGAGGAATGAT
259 GAAAAGTGCCAATATTCTAATTCAAGGTCAGGGACATTGGACTTAAGGATGCGAAGAATGAT
389909 TATAAACTCT
Statistics
Matches: 1914, Mismatches: 255, Indels: 169
0.82 0.11 0.07
Matches are distributed among these distances:
935 38 0.02
936 4 0.00
937 1 0.00
938 1 0.00
939 3 0.00
940 1 0.00
948 5 0.00
949 178 0.09
950 3 0.00
951 6 0.00
952 231 0.12
953 1 0.00
959 1 0.00
963 1 0.00
965 3 0.00
966 8 0.00
967 726 0.38
968 20 0.01
971 1 0.00
981 3 0.00
983 76 0.04
984 532 0.28
985 6 0.00
986 1 0.00
988 1 0.00
989 3 0.00
990 59 0.03
991 1 0.00
ACGTcount: A:0.30, C:0.16, G:0.26, T:0.29
Consensus pattern (973 bp):
GTGCCACTAACTTGTGGACTTCGAAGAGGTGCCACTAACTAGTGGGCTTTGAAAAGGGATTCGTG
TTGACAAACATTTCTTGACAAAGTTTCTAACAAACGTTCTCAACAAAAGTTCTAAGGCCTTACCA
CCGTAGACAGGTGTTGTGGAAGGGTATGACTTCTCAGGGATTGGTGAGGGTATGATCAGTGTTTG
GCGATGTGTTAGTGTGCAGATTCAAGGCCTACAACATTAGACTTAAAGATGATATAAGAATGAGA
AAAGTGCCAATATTCTAATTCAAGGTCAGGGACATTGGACTTAAGGATGCGAAGAATGATAAAGG
TGCCAATATGCTGATTTACGACCAGCAATATCGGGCTTGAAGATGAGAAAAATGATAAAGGTGCC
AATATGCTGATTCAAGGCTAGCGATATTGGGCTTAAAGGTGACAAAAATGCCAACATGCTGCTTC
AAGGCCAGCGATATTGGACTTAAGGATGACAAAGGTGCCAATATGCTGATTCAAGGCTAATGATA
TTGACTTAAGAAAGAAAAAGATGCCAATGTGTTGATTCAAGGCTAGCGACATTGGACTTAAGAAA
GAAATGGTTTGACAAGTGCCTATGAGTTGATTCAAGGCCAACGACATTGAGCTTAGAAGGAGATG
CTACCATCTTGTGTGGGCTTTTGAGAGGGTAGCCACGACTTTTGTGGGCTTTTAAAGAGGTCCAC
CCTTGTGTGGGCTTTGAAGAAGGTTGCCACCAGCTTGTGTGGGCTTTGAAGAAAGTTGCCCTACT
TCGGGATATTAAACTTCCTGGGGATGACATGCTTATCATGCGTGTCTAACTATGAACTTGGTGCC
ACCGATATTAGCGGGCTTAAAAAGATTGAGTGCCACTAGCTCGTGTGGGCTTTGGTGTCTAGCTC
TTTGTAGACGAACTCTAGTGCCATTATATATAGCAGGTGCCACTGATTGTGGACTTCAAAAAG
Found at i:388367 original size:32 final size:33
Alignment explanation
Indices: 388331--388457 Score: 136
Period size: 32 Copynumber: 3.8 Consensus size: 33
388321 ATGTTACCAT
*
388331 CTTGTGTGGGCTTTTG-AGAGGGTTGCCACCGA
1 CTTGTGTGGGCTTTTGAAGAAGGTTGCCACCGA
*
388363 CTTGTGTGGGCTTTTACATGGAAGAAGGTTGCCACCGG
1 CTTGTGTGGGC-TTT---T-GAAGAAGGTTGCCACCGA
388401 CTTGTGTGGGC-TTTGAAGAAGGTTGCCACC-A
1 CTTGTGTGGGCTTTTGAAGAAGGTTGCCACCGA
*
388432 GCTTGTGTAGGCTTTT-AAGAAAGGTT
1 -CTTGTGTGGGCTTTTGAAG-AAGGTT
388458 TCTCCACTGG
Statistics
Matches: 82, Mismatches: 4, Indels: 17
0.80 0.04 0.17
Matches are distributed among these distances:
32 40 0.49
33 13 0.16
36 3 0.04
37 1 0.01
38 25 0.30
ACGTcount: A:0.18, C:0.17, G:0.34, T:0.31
Consensus pattern (33 bp):
CTTGTGTGGGCTTTTGAAGAAGGTTGCCACCGA
Found at i:388672 original size:28 final size:28
Alignment explanation
Indices: 388613--388696 Score: 89
Period size: 28 Copynumber: 3.0 Consensus size: 28
388603 TATATAGCAA
*
388613 GTGCCACTAA-TTGTGGGCTTAGAAAAG
1 GTGCCACTAACTTGTGGACTTAGAAAAG
* *
388640 GTGCCACTAACTTGTGGACTTCGAAGAG
1 GTGCCACTAACTTGTGGACTTAGAAAAG
* * * * *
388668 TTGCCACTGACTAGTGGGCTTTGAAAAG
1 GTGCCACTAACTTGTGGACTTAGAAAAG
388696 G
1 G
388697 GATTCGTGTT
Statistics
Matches: 46, Mismatches: 10, Indels: 1
0.81 0.18 0.02
Matches are distributed among these distances:
27 10 0.22
28 36 0.78
ACGTcount: A:0.26, C:0.18, G:0.30, T:0.26
Consensus pattern (28 bp):
GTGCCACTAACTTGTGGACTTAGAAAAG
Found at i:389108 original size:52 final size:52
Alignment explanation
Indices: 389026--389158 Score: 160
Period size: 52 Copynumber: 2.6 Consensus size: 52
389016 ATGATAAAGG
* *
389026 TGCCAAAATGCTGATTCAAGGCCAGTGATATTGGGCTTAAAGG-TGACAAAAA
1 TGCCAAAATGCTGATTCAAGGCTAGCGATATTGGGC-TAAAGGATGACAAAAA
* * * **
389078 TGCCAACATGCTGGTTCAAGGCTAGCGATATTGGGCTGAAGGATGACAAAGG
1 TGCCAAAATGCTGATTCAAGGCTAGCGATATTGGGCTAAAGGATGACAAAAA
* * *
389130 TGCCAATATGCTGATTCAAGCCTAACGAT
1 TGCCAAAATGCTGATTCAAGGCTAGCGAT
389159 GTTGTACTTA
Statistics
Matches: 69, Mismatches: 11, Indels: 2
0.84 0.13 0.02
Matches are distributed among these distances:
51 5 0.07
52 64 0.93
ACGTcount: A:0.32, C:0.18, G:0.26, T:0.23
Consensus pattern (52 bp):
TGCCAAAATGCTGATTCAAGGCTAGCGATATTGGGCTAAAGGATGACAAAAA
Found at i:389222 original size:52 final size:51
Alignment explanation
Indices: 389125--389229 Score: 129
Period size: 52 Copynumber: 2.0 Consensus size: 51
389115 GAAGGATGAC
** *
389125 AAAGGTGCCAATATGCTGATTCAAGCCTAACGATGTTGTACTTAAGAAAGAA
1 AAAGGTGCCAATATGCTGATTCAAGCCTAACGAACTTGGACTTAAGAAA-AA
* * * * *
389177 AAAGGTGCCAATGTGCTTATTCAAGGCTAGCGAACTTGGAGTTAAGAAAAA
1 AAAGGTGCCAATATGCTGATTCAAGCCTAACGAACTTGGACTTAAGAAAAA
389228 AA
1 AA
389230 TGGTTTGATA
Statistics
Matches: 45, Mismatches: 8, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
51 4 0.09
52 41 0.91
ACGTcount: A:0.39, C:0.14, G:0.23, T:0.24
Consensus pattern (51 bp):
AAAGGTGCCAATATGCTGATTCAAGCCTAACGAACTTGGACTTAAGAAAAA
Found at i:389641 original size:28 final size:28
Alignment explanation
Indices: 389563--389649 Score: 113
Period size: 28 Copynumber: 3.1 Consensus size: 28
389553 TATATACAGC
* *
389563 AGGTGCCACTGA-TTGTGGACTTCGAAA
1 AGGTGCCACTAACTTGTGGACTTTGAAA
*
389590 AGGTGCCACTAACTTGTGGACTTTGAAG
1 AGGTGCCACTAACTTGTGGACTTTGAAA
* * *
389618 AGGTGCCACTAACTAGTGGGCTTTGAGA
1 AGGTGCCACTAACTTGTGGACTTTGAAA
389646 AGGT
1 AGGT
389650 ATTTGTGTTG
Statistics
Matches: 52, Mismatches: 7, Indels: 1
0.87 0.12 0.02
Matches are distributed among these distances:
27 11 0.21
28 41 0.79
ACGTcount: A:0.25, C:0.17, G:0.31, T:0.26
Consensus pattern (28 bp):
AGGTGCCACTAACTTGTGGACTTTGAAA
Found at i:397000 original size:13 final size:13
Alignment explanation
Indices: 396982--397007 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
396972 TACAGCAAGT
396982 ATGTATCGATACA
1 ATGTATCGATACA
396995 ATGTATCGATACA
1 ATGTATCGATACA
397008 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:398742 original size:13 final size:13
Alignment explanation
Indices: 398724--398750 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
398714 ACATTATGCT
398724 TTGTATCGATACA
1 TTGTATCGATACA
398737 TTGTATCGATACA
1 TTGTATCGATACA
398750 T
1 T
398751 GAAACTGGCA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.30, C:0.15, G:0.15, T:0.41
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:405802 original size:33 final size:33
Alignment explanation
Indices: 405760--405826 Score: 100
Period size: 33 Copynumber: 2.0 Consensus size: 33
405750 CGAGAGTTGA
405760 TCACTTCACT-TTCGCAGCACATGAATGAGCACT
1 TCACTTCACTCTT-GCAGCACATGAATGAGCACT
* *
405793 TCACTTCACTCTTGTAGCACATGGATGAGCACT
1 TCACTTCACTCTTGCAGCACATGAATGAGCACT
405826 T
1 T
405827 TAGTGCACTT
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
33 29 0.94
34 2 0.06
ACGTcount: A:0.25, C:0.28, G:0.16, T:0.30
Consensus pattern (33 bp):
TCACTTCACTCTTGCAGCACATGAATGAGCACT
Found at i:406153 original size:21 final size:22
Alignment explanation
Indices: 406129--406173 Score: 83
Period size: 21 Copynumber: 2.1 Consensus size: 22
406119 TTTTGAAATT
406129 AATTTTTTATCAAGGGGGA-AA
1 AATTTTTTATCAAGGGGGAGAA
406150 AATTTTTTATCAAGGGGGAGAA
1 AATTTTTTATCAAGGGGGAGAA
406172 AA
1 AA
406174 ATGAAACTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
21 19 0.83
22 4 0.17
ACGTcount: A:0.40, C:0.04, G:0.24, T:0.31
Consensus pattern (22 bp):
AATTTTTTATCAAGGGGGAGAA
Found at i:406728 original size:19 final size:19
Alignment explanation
Indices: 406701--406755 Score: 67
Period size: 20 Copynumber: 2.8 Consensus size: 19
406691 TGTATCGATA
*
406701 CATTATATCGATACAT-ATT
1 CATTGTATCGATACATCA-T
406720 CATTGTATCGATACATGCAT
1 CATTGTATCGATACAT-CAT
*
406740 AATTGTATCGATACAT
1 CATTGTATCGATACAT
406756 GAAACTGCAG
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
19 15 0.47
20 16 0.50
21 1 0.03
ACGTcount: A:0.35, C:0.16, G:0.11, T:0.38
Consensus pattern (19 bp):
CATTGTATCGATACATCAT
Found at i:407853 original size:21 final size:21
Alignment explanation
Indices: 407829--407868 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
407819 AATTCTAAGG
407829 GTAATTCTTCAAAAGAATATT
1 GTAATTCTTCAAAAGAATATT
*
407850 GTAATTCTTCTAAAGAATA
1 GTAATTCTTCAAAAGAATA
407869 AGAATTGACC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.42, C:0.10, G:0.10, T:0.38
Consensus pattern (21 bp):
GTAATTCTTCAAAAGAATATT
Found at i:409920 original size:19 final size:19
Alignment explanation
Indices: 409873--409928 Score: 67
Period size: 19 Copynumber: 2.9 Consensus size: 19
409863 CTGCCAATTT
409873 CATGTATCGATATAATTGAA
1 CATGTATCGATATAA-TGAA
** * *
409893 TGTGGATCGATACAATGAA
1 CATGTATCGATATAATGAA
409912 CATGTATCGATATAATG
1 CATGTATCGATATAATG
409929 TATCAATACA
Statistics
Matches: 28, Mismatches: 8, Indels: 1
0.76 0.22 0.03
Matches are distributed among these distances:
19 17 0.61
20 11 0.39
ACGTcount: A:0.38, C:0.11, G:0.20, T:0.32
Consensus pattern (19 bp):
CATGTATCGATATAATGAA
Found at i:410507 original size:32 final size:33
Alignment explanation
Indices: 410466--410617 Score: 145
Period size: 32 Copynumber: 4.7 Consensus size: 33
410456 ATGCTACCAT
* * *
410466 TTGTATGGGCTTTTGAAG-GGGTTGCCA-CTGAC
1 TTGTGTGGGCTTTTGAAGAAGGTTGCCACCAG-C
* * *
410498 TTGTGTGGGCTTTTAAAG-AGGTTACCGCCAGC
1 TTGTGTGGGCTTTTGAAGAAGGTTGCCACCAGC
410530 TTGTGTGGGC-TTTGAAGAAGGTTGCCACCAGC
1 TTGTGTGGGCTTTTGAAGAAGGTTGCCACCAGC
* * * *
410562 TTGTATGGGC-TTTAAAGAAGGTTGCCACTAAC
1 TTGTGTGGGCTTTTGAAGAAGGTTGCCACCAGC
*
410594 TTGTGTGTGCTTTTG-AGAAAGGTT
1 TTGTGTGGGCTTTTGAAG-AAGGTT
410618 TCTCCATTGG
Statistics
Matches: 100, Mismatches: 16, Indels: 7
0.81 0.13 0.06
Matches are distributed among these distances:
31 6 0.06
32 83 0.83
33 11 0.11
ACGTcount: A:0.20, C:0.15, G:0.32, T:0.34
Consensus pattern (33 bp):
TTGTGTGGGCTTTTGAAGAAGGTTGCCACCAGC
Found at i:410838 original size:28 final size:27
Alignment explanation
Indices: 410789--410851 Score: 83
Period size: 28 Copynumber: 2.3 Consensus size: 27
410779 TATATACAGT
410789 AGGTGCCACTAATTGTGGACTTTGAAA
1 AGGTGCCACTAATTGTGGACTTTGAAA
* *
410816 AGGTGCCAC-AGACTTGTGTACTTTGAAG
1 AGGTGCCACTA-A-TTGTGGACTTTGAAA
410844 AGGTGCCA
1 AGGTGCCA
410852 TTGACAATGT
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
26 1 0.03
27 10 0.31
28 21 0.66
ACGTcount: A:0.27, C:0.17, G:0.29, T:0.27
Consensus pattern (27 bp):
AGGTGCCACTAATTGTGGACTTTGAAA
Found at i:411475 original size:32 final size:33
Alignment explanation
Indices: 411420--411496 Score: 84
Period size: 32 Copynumber: 2.4 Consensus size: 33
411410 GGCTTTTGCA
* * *
411420 TTGAAAAAGGCTACCACCGACTTGTGTGGGC-C
1 TTGAAAAAGGTTACCACCAACTTGTGTAGGCTC
* * *
411452 TTGAAAAAGGTTGCCACTAACTTGTGTAGGCTT
1 TTGAAAAAGGTTACCACCAACTTGTGTAGGCTC
*
411485 TTGAGAAAGGTT
1 TTGAAAAAGGTT
411497 TCACCACTGA
Statistics
Matches: 37, Mismatches: 7, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
32 26 0.70
33 11 0.30
ACGTcount: A:0.27, C:0.17, G:0.27, T:0.29
Consensus pattern (33 bp):
TTGAAAAAGGTTACCACCAACTTGTGTAGGCTC
Found at i:411721 original size:28 final size:28
Alignment explanation
Indices: 411687--411741 Score: 74
Period size: 28 Copynumber: 2.0 Consensus size: 28
411677 AAATTACGGG
* * *
411687 CTTCGAAAATGTGCCACTGACTTGTGGA
1 CTTCGAAAAGGTGCCACTAACTAGTGGA
*
411715 CTTCGAAGAGGTGCCACTAACTAGTGG
1 CTTCGAAAAGGTGCCACTAACTAGTGG
411742 GCTTTGAGAA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
28 23 1.00
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.25
Consensus pattern (28 bp):
CTTCGAAAAGGTGCCACTAACTAGTGGA
Found at i:412157 original size:43 final size:43
Alignment explanation
Indices: 412077--412166 Score: 103
Period size: 43 Copynumber: 2.1 Consensus size: 43
412067 AGAAGAATGA
* *
412077 TAAAGGTGCCAATATGTTGATTCAAGGCCAACGATATTAGG-CT
1 TAAAAGTGCCAATATGTTGATTCAAGGCCAACAATATT-GGACT
* * *
412120 TAAAAGTGCCAATGTGTTGCTTTAAGGCC-ACTAATATTGGACT
1 TAAAAGTGCCAATATGTTGATTCAAGGCCAAC-AATATTGGACT
412163 TAAA
1 TAAA
412167 GATGACAAAG
Statistics
Matches: 40, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
42 4 0.10
43 36 0.90
ACGTcount: A:0.33, C:0.16, G:0.21, T:0.30
Consensus pattern (43 bp):
TAAAAGTGCCAATATGTTGATTCAAGGCCAACAATATTGGACT
Found at i:412209 original size:52 final size:53
Alignment explanation
Indices: 412153--412277 Score: 139
Period size: 52 Copynumber: 2.4 Consensus size: 53
412143 AAGGCCACTA
* *
412153 ATATTGGACTTAAAG-ATGACAAAGGCGCCAATATGCTAATCTAAGGCCAGCG
1 ATATTGGACTTAAAGAAAGAAAAAGGCGCCAATATGCTAATCTAAGGCCAGCG
* * * * * **
412205 ATATTGGACGT-AAGAAAGAAAAAGGTGCCAATGTGCTGATTTAAGGGTAGCG
1 ATATTGGACTTAAAGAAAGAAAAAGGCGCCAATATGCTAATCTAAGGCCAGCG
*
412257 ACATTGGACTT-AAGAAAGAAA
1 ATATTGGACTTAAAGAAAGAAA
412278 CGGTTTGATA
Statistics
Matches: 61, Mismatches: 11, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
51 3 0.05
52 58 0.95
ACGTcount: A:0.39, C:0.14, G:0.26, T:0.22
Consensus pattern (53 bp):
ATATTGGACTTAAAGAAAGAAAAAGGCGCCAATATGCTAATCTAAGGCCAGCG
Found at i:412432 original size:32 final size:31
Alignment explanation
Indices: 412396--412460 Score: 76
Period size: 31 Copynumber: 2.1 Consensus size: 31
412386 GGCTTTTGCA
* *
412396 TTGAAGAAAGTTACCACCGGCTTATGTGGGCT
1 TTGAAG-AAGTTACCACCAGCTTATATGGGCT
* * *
412428 TTGAAGAGGTTGCCACCAGCTTGTATGGGCT
1 TTGAAGAAGTTACCACCAGCTTATATGGGCT
412459 TT
1 TT
412461 TGAGAATGGT
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
31 22 0.79
32 6 0.21
ACGTcount: A:0.22, C:0.18, G:0.29, T:0.31
Consensus pattern (31 bp):
TTGAAGAAGTTACCACCAGCTTATATGGGCT
Found at i:412692 original size:28 final size:28
Alignment explanation
Indices: 412642--412711 Score: 88
Period size: 28 Copynumber: 2.5 Consensus size: 28
412632 TTATTACAGC
* *
412642 AGGTACCACTAA-TTGTGGGCTTCGAAA
1 AGGTGCCACTAACTTGTGGACTTCGAAA
* * *
412669 AGGTGCCACTGACTTGTGGACTTCGTAG
1 AGGTGCCACTAACTTGTGGACTTCGAAA
412697 AGGTGCCACTAACTT
1 AGGTGCCACTAACTT
412712 ATGGGCTTTG
Statistics
Matches: 36, Mismatches: 6, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
27 10 0.28
28 26 0.72
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.27
Consensus pattern (28 bp):
AGGTGCCACTAACTTGTGGACTTCGAAA
Found at i:413193 original size:52 final size:52
Alignment explanation
Indices: 413134--413259 Score: 144
Period size: 52 Copynumber: 2.4 Consensus size: 52
413124 CAAGGCTAGG
* * * * * *
413134 GACATTGGACTTAAGGATGACAAAGGTGCCAATATGCTAATTCCAGGCCAAT
1 GACATTGGACTTAAGAAAGAAAAAAGTGCCAATATGCTAATTCAAGGCCAAC
* * * * * *
413186 GATATTGGACTTTAGAAAGAAAAAAGTGCCAATGTGCTGATTCAAGGCTAGC
1 GACATTGGACTTAAGAAAGAAAAAAGTGCCAATATGCTAATTCAAGGCCAAC
413238 GACATTGGACTTAAGAAAGAAA
1 GACATTGGACTTAAGAAAGAAA
413260 TGGTTTGACA
Statistics
Matches: 60, Mismatches: 14, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
52 60 1.00
ACGTcount: A:0.38, C:0.15, G:0.24, T:0.23
Consensus pattern (52 bp):
GACATTGGACTTAAGAAAGAAAAAAGTGCCAATATGCTAATTCAAGGCCAAC
Found at i:413425 original size:32 final size:33
Alignment explanation
Indices: 413381--413454 Score: 96
Period size: 32 Copynumber: 2.3 Consensus size: 33
413371 TGTTGCATTA
* *
413381 AAAAAGGCTGCCACCAACTTGTGTGGGC-TTTG
1 AAAAAGGTTGCCACCAACTTGTGTAGGCTTTTG
* *
413413 AAAAAGGTTGCCACTAGCTTGTGTAGGCTTTTG
1 AAAAAGGTTGCCACCAACTTGTGTAGGCTTTTG
*
413446 AGAAAGGTT
1 AAAAAGGTT
413455 TCTCCATTAG
Statistics
Matches: 36, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
32 24 0.67
33 12 0.33
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.28
Consensus pattern (33 bp):
AAAAAGGTTGCCACCAACTTGTGTAGGCTTTTG
Found at i:413677 original size:28 final size:28
Alignment explanation
Indices: 413625--413698 Score: 87
Period size: 28 Copynumber: 2.7 Consensus size: 28
413615 TATATATAGT
* *
413625 AGGTGCCACAGA-TTGTGGTCTTCGAAA
1 AGGTGCCACTGACTTGTGGACTTCGAAA
* * *
413652 ATGTGGCACTGACTTGTGGACTTCGAAG
1 AGGTGCCACTGACTTGTGGACTTCGAAA
*
413680 AGGTGCCACTGACTAGTGG
1 AGGTGCCACTGACTTGTGG
413699 GCTTTGAGAA
Statistics
Matches: 38, Mismatches: 8, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
27 9 0.24
28 29 0.76
ACGTcount: A:0.23, C:0.19, G:0.32, T:0.26
Consensus pattern (28 bp):
AGGTGCCACTGACTTGTGGACTTCGAAA
Found at i:414082 original size:43 final size:43
Alignment explanation
Indices: 414034--414124 Score: 114
Period size: 43 Copynumber: 2.1 Consensus size: 43
414024 AGAAGAGTGA
* *
414034 TAAAGGTGCCAATATGTTGATTCAAGGGCAGC-GATATTAGG-CT
1 TAAAGGTGCCAACATGTTGATTCAAGGCCA-CTGATATT-GGACT
* *
414077 TAAAGGTGCCAACGTGTTGCTTCAAGGCCACTGATATTGGACT
1 TAAAGGTGCCAACATGTTGATTCAAGGCCACTGATATTGGACT
414120 TAAAG
1 TAAAG
414125 ATGACAAAGG
Statistics
Matches: 42, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
42 3 0.07
43 39 0.93
ACGTcount: A:0.30, C:0.16, G:0.26, T:0.27
Consensus pattern (43 bp):
TAAAGGTGCCAACATGTTGATTCAAGGCCACTGATATTGGACT
Found at i:414191 original size:52 final size:52
Alignment explanation
Indices: 414099--414230 Score: 144
Period size: 52 Copynumber: 2.5 Consensus size: 52
414089 CGTGTTGCTT
* *
414099 CAAGGCCA-CTGATATTGGACTTAA-AGATGACAAAGGTGCCAATATGCTAAT-
1 CAAGGCCAGC-GATATTGGACTTAAGA-AAGAAAAAGGTGCCAATATGCTAATA
* * * *
414150 CTAAGGCCAGCGATATTGGACGTAAGAAAGAAAAAGTTGCCAATGTGCTGATA
1 C-AAGGCCAGCGATATTGGACTTAAGAAAGAAAAAGGTGCCAATATGCTAATA
* *
414203 CAAGGCTAGCGACATTGGACTTAAGAAA
1 CAAGGCCAGCGATATTGGACTTAAGAAA
414231 TAAACGGTTT
Statistics
Matches: 68, Mismatches: 9, Indels: 7
0.81 0.11 0.08
Matches are distributed among these distances:
51 1 0.01
52 64 0.94
53 3 0.04
ACGTcount: A:0.38, C:0.17, G:0.24, T:0.21
Consensus pattern (52 bp):
CAAGGCCAGCGATATTGGACTTAAGAAAGAAAAAGGTGCCAATATGCTAATA
Found at i:414395 original size:31 final size:31
Alignment explanation
Indices: 414353--414422 Score: 86
Period size: 31 Copynumber: 2.2 Consensus size: 31
414343 GGCTTTTGCA
* *
414353 TTAAAGAAGGTTACCACCGGCTTGTGTGGGCT
1 TTAAAG-AGGTTACCAACAGCTTGTGTGGGCT
* * *
414385 TTGAAGAGGTTGCCAACAGCTTGTGTGGGTT
1 TTAAAGAGGTTACCAACAGCTTGTGTGGGCT
414416 TTAAAGA
1 TTAAAGA
414423 ATAGTTTCTC
Statistics
Matches: 32, Mismatches: 6, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
31 27 0.84
32 5 0.16
ACGTcount: A:0.24, C:0.14, G:0.31, T:0.30
Consensus pattern (31 bp):
TTAAAGAGGTTACCAACAGCTTGTGTGGGCT
Found at i:415149 original size:52 final size:52
Alignment explanation
Indices: 415002--415152 Score: 164
Period size: 52 Copynumber: 2.9 Consensus size: 52
414992 GATGAGAAGA
* * * *
415002 ATGATAAAGGTACCAATATGCTGATTCATGCCTAGTGATATTGGGCTTAAAGG
1 ATGACAAAGGTGCCAATATGCTGATTCAGGCC-AGTGATATTGGACTTAAAGG
** * *
415055 -TGACAAAGGTGCCAACGTGCT-ATTTCAAGGCCAGGGACATTGGACTT-AAGG
1 ATGACAAAGGTGCCAATATGCTGA-TTC-AGGCCAGTGATATTGGACTTAAAGG
*
415106 ATGACAAAGGTGCCAATATGCTGATTGCAGGCCAATGATATTGGACT
1 ATGACAAAGGTGCCAATATGCTGATT-CAGGCCAGTGATATTGGACT
415153 GAAGAAAGAA
Statistics
Matches: 80, Mismatches: 13, Indels: 11
0.77 0.12 0.11
Matches are distributed among these distances:
51 5 0.06
52 69 0.86
53 6 0.08
ACGTcount: A:0.31, C:0.17, G:0.26, T:0.26
Consensus pattern (52 bp):
ATGACAAAGGTGCCAATATGCTGATTCAGGCCAGTGATATTGGACTTAAAGG
Found at i:415374 original size:32 final size:32
Alignment explanation
Indices: 415338--415400 Score: 99
Period size: 32 Copynumber: 2.0 Consensus size: 32
415328 TTTTGCATTA
*
415338 AAGAAGGTTACCACCGGCTTGTGTGGGCTTTG
1 AAGAAGGTTACCACCAGCTTGTGTGGGCTTTG
* *
415370 AAGAAGGTTGCCACCAGTTTGTGTGGGCTTT
1 AAGAAGGTTACCACCAGCTTGTGTGGGCTTT
415401 TGAGAAAGGT
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
32 28 1.00
ACGTcount: A:0.19, C:0.17, G:0.33, T:0.30
Consensus pattern (32 bp):
AAGAAGGTTACCACCAGCTTGTGTGGGCTTTG
Found at i:415726 original size:980 final size:982
Alignment explanation
Indices: 411199--418096 Score: 8001
Period size: 980 Copynumber: 7.0 Consensus size: 982
411189 AAGAATGATT
* * * * * *
411199 AAGGTGCCAATATGCTGATTCAAGGCCAACGATATTAGACTTAAAAAAGAAAAAGGTGCCAAGGT
1 AAGGTGCCAATATGCTGATTC-AGGCCAATGATATTGGACTGAAGAAAGAAAAAGATGCCAATGT
* * *
411264 GCTGATTCAAGGC-AGCGACATTGGACTTAAGAAATAAATGGTTTGACAAATGCCTATGTGCTGA
65 GCTGATTCAAGGCTAGCGACATTGGACTTAAGAAAGAAATGGTTTGACAAGTGCCTATGTGTTGA
* ** * * * * *
411328 TTTAAGGCCAACAACATTGGGCATAGAAGGATATGCTACCATCTTATGTGGGCTCTTGAGAGTGT
130 TTCAAGGCCAATGACATTGGGCTTAGAAGGAGATGCTACCATCTTGTGTGGGCTTTTGAGAGGGT
* * * * *
411393 TGCCACCAACTTGTGAGGGCTTTTGCATTGAAA-AAGGCTACCACCGACTTGTGTGGGCCTTGAA
195 TGCCACCGACTTGTGTGGGCTTTTGCATT-AAAGAAGGTTACCACCGGCTTGTGTGGGCTTTGAA
* * * * * *
411457 AAAGGTTGCCACTAACTTGTGTAGGCTTTTGAGAAAGGTTTCACCACTGAGATATTAAACTTCCT
259 GAAGGTTGCCACCAGCTTGTGTGGGCTTTTGAGAAAGGTTTCTCCACTGGGATATTAAACTTCCT
* * * * **
411522 ACGGATGACATACTTGTCATGTGTGTCTAACTACGAACTTGGTGC-CACCGATATTGGCAGGCTT
324 AGGGATGACATGCTTGTCATGTGTGTTTGACTATAAACTTGGT-CTCACCGATATTGGCAGGCTT
* ** * * * *
411586 AAAAATATTGGCTTGCCACTAGCTTGTGTGGGCTTTGGTGTCTAACTACTTGTAGATGAACTCTA
388 AAAAATATTGG-GTGCCACTAGCTCCTATGGGCTTTGGTGTCTAGCTCCTTGTAGACGAACTCTA
** * ** *
411651 GTGCCATTATATGTAGCAGGTGCCACAAATTACGGGCTTCGAAAATGTGCCACTGACTTGTGGAC
452 GTGCCATTATATACAGCAGGTGCCACTAATTGTGGGCTTCGAAAAGGTGCCACTGACTTGTGGAC
* * *
411716 TTCGAAGAGGTGCCACTAACTAGTGGGCTTTGAGAAGGGATTCGTGTTGACAAATATTTCTTGAC
517 TTCGTAGAGGTGCCACTAACTAGTGGGCTTTGAGAAGGGATTCGTGTTGACAAACATTTCTTGAT
* * * * * *
411781 GAAGTTTTTAACAAACGTTCTCGATAAAAGTTCTAAGG-CTTGACCTCCTTAGATAGGTGTTATG
582 GAAGTTTCTGACAAACGTTCTCGACAAAAGTTCTAAGGCCTT-ACCTACTTAGACAGGTGTTGTG
* * * * **
411845 GAAGGGTATGACTTCCTAGGGATTAGTGAGGGTATGATTAGTGTTTAGCGATGTGGTAGTGTGCA
646 GAAGGGTATGACTTCCTAAGGATTGGTGAGGGTATGATCAGTGTTTGGCGATGTTCTAGTGTGCA
* * **
411910 GATTCAAGGCCTACAACATTAGACTTAAAGATGATATAAGAATGAGAAGAGTGCTAATACACTAA
711 GATTCAAGGCCTACAACATTAGACTTAAAGATGATATAAGAATGAGAAAAGTGCCAATATTCTAA
* * * ** ** * *
411975 TTCAAGGTCAGCGATATTGAACTTAAGGATGTAAAGAATGGCAAAGATGCCAATATGATGATTCA
776 TTCAAGGTCAGTGATTTTGGACTTAAGGATGCGAAGAATGATAAAG-TGCCAATATGCTGATTTA
* * * * * * *
412040 CAACTAGCAATATTAG-GCTTGAAGATTAGAAGAATGATAAAGGTGCCAATATGTTGATTCAAGG
840 CAGCAAACAATA-TCGTGCTTGAAGATGAGAAGAATGATAAAGGTACCAATATGCTGATTCAAGG
* * * * * * *** *
412104 CCAACGATATTAGGCTTAAAAGTG-CCAATGTG-----TTGC--TTT-AAGGCCACTAATATTGG
904 CCAGCGATATTGGGCTTAAAGGTGACAAAGGTGCCAACGTGCTATTTCAAGGCCAGGGACATTGG
*
412160 ACTTAAAGATGACA
969 ACTTAAGGATGACA
* * * ** *
412174 AAGGCGCCAATATGCTAATCTAAGGCCAGCGATATTGGAC-GTAAGAAAGAAAAAGGTGCCAATG
1 AAGGTGCCAATATGCTGAT-TCAGGCCAATGATATTGGACTG-AAGAAAGAAAAAGATGCCAATG
* * * *
412238 TGCTGATTTAAGGGTAGCGACATTGGACTTAAGAAAGAAACGGTTTGATAAGTGCCTATGTGTTG
64 TGCTGATTCAAGGCTAGCGACATTGGACTTAAGAAAGAAATGGTTTGACAAGTGCCTATGTGTTG
* * *
412303 ATTCAAGGCTAATGACATTGGGTTTAGAAGGAGATGCTACCATCTTGTGTGTGCTTTTGAGAGGG
129 ATTCAAGGCCAATGACATTGGGCTTAGAAGGAGATGCTACCATCTTGTGTGGGCTTTTGAGAGGG
*** * * *
412368 TTGCCATTAACTTGTGTGGGCTTTTGCATTGAAGAAAGTTACCACCGGCTTATGTGGGCTTTGAA
194 TTGCCACCGACTTGTGTGGGCTTTTGCATTAAAGAAGGTTACCACCGGCTTGTGTGGGCTTTGAA
* * *
412433 G-AGGTTGCCACCAGCTTGTATGGGCTTTTGAGAATGGTTTCTCGACTAGGGATATTAAACTTCC
259 GAAGGTTGCCACCAGCTTGTGTGGGCTTTTGAGAAAGGTTTCTCCACT-GGGATATTAAACTTCC
* * * **
412497 TCGGGATGACATGCGTGTCATGTGTGTTTGACTATAAACTTAGTCTCACCGATATTGGTGGGCTT
323 TAGGGATGACATGCTTGTCATGTGTGTTTGACTATAAACTTGGTCTCACCGATATTGGCAGGCTT
* *
412562 AAAAATATTGGGTACAACTAGCTCCTATGGGCTTTGGTGTCTAGCTCCTTGTAGACGAACTCTAG
388 AAAAATATTGGGTGCCACTAGCTCCTATGGGCTTTGGTGTCTAGCTCCTTGTAGACGAACTCTAG
* *
412627 TTCCATTAT-TACAGCAGGTACCACTAATTGTGGGCTTCGAAAAGGTGCCACTGACTTGTGGACT
453 TGCCATTATATACAGCAGGTGCCACTAATTGTGGGCTTCGAAAAGGTGCCACTGACTTGTGGACT
*
412691 TCGTAGAGGTGCCACTAACTTA-TGGGCTTTGAGAAGGGATTCGTGCTGACAAACATTTCTTGAT
518 TCGTAGAGGTGCCACTAAC-TAGTGGGCTTTGAGAAGGGATTCGTGTTGACAAACATTTCTTGAT
* * * *
412755 AAAGTTTTTGACAAGCGTTATCGACAAAAGTTCTAAGGCCTTACCTACTTAGACAGGTGTTGTGG
582 GAAGTTTCTGACAAACGTTCTCGACAAAAGTTCTAAGGCCTTACCTACTTAGACAGGTGTTGTGG
* * * * * *
412820 AAGTGTATGACTTCTTAAGGATTGTTGAGGGTATGACCAATGTTTGGTGATGTTCTAGTGTGCAG
647 AAGGGTATGACTTCCTAAGGATTGGTGAGGGTATGATCAGTGTTTGGCGATGTTCTAGTGTGCAG
* * *
412885 ATTCAAGGCCTACATCGTTAGACTTAAAGATGATATAAGAATAAGAAAAGTGCCAATATTCTAAT
712 ATTCAAGGCCTACAACATTAGACTTAAAGATGATATAAGAATGAGAAAAGTGCCAATATTCTAAT
* * *
412950 TCAAGGT-TGTGATTTTGGACTGAAGGATGCAAAGAATGATTAAAGTGCCAATATGCTGATTTAC
777 TCAAGGTCAGTGATTTTGGACTTAAGGATGCGAAGAATGA-TAAAGTGCCAATATGCTGATTTAC
* * * *
413014 -GACAAACAATATTGTGCTTAAAGATGAGAAGAATGATAAAGGTACTAATATGCTAATTCAA-GC
841 AG-CAAACAATATCGTGCTTGAAGATGAGAAGAATGATAAAGGTACCAATATGCTGATTCAAGGC
* * * ** *
413077 CTAGGGATATTAGGCTTAAAGGTGACAAAGGTGCCAACGCGCTGCTTCAAGGCTAGGGACATTGG
905 C-AGCGATATTGGGCTTAAAGGTGACAAAGGTGCCAACGTGCTATTTCAAGGCCAGGGACATTGG
413142 ACTTAAGGATGACA
969 ACTTAAGGATGACA
* **
413156 AAGGTGCCAATATGCTAATTCCAGGCCAATGATATTGGACTTTAGAAAGAAAAA-AGTGCCAATG
1 AAGGTGCCAATATGCTGATT-CAGGCCAATGATATTGGACTGAAGAAAGAAAAAGA-TGCCAATG
* *
413220 TGCTGATTCAAGGCTAGCGACATTGGACTTAAGAAAGAAATGGTTTGACAAATGCCTATGTATTG
64 TGCTGATTCAAGGCTAGCGACATTGGACTTAAGAAAGAAATGGTTTGACAAGTGCCTATGTGTTG
* * *
413285 ATTCAAGGCCAATGAAATTGGGCTTAGAAGGACATGCTACCATCTTGTATGGGCTTTTGAGAGGG
129 ATTCAAGGCCAATGACATTGGGCTTAGAAGGAGATGCTACCATCTTGTGTGGGCTTTTGAGAGGG
* * * * * **
413350 TTGCCACCGACTTGTGCGGGCTGTTGCATTAAAAAAGGCTGCCACCAACTTGTGTGGGCTTTGAA
194 TTGCCACCGACTTGTGTGGGCTTTTGCATTAAAGAAGGTTACCACCGGCTTGTGTGGGCTTTGAA
* * * * *
413415 AAAGGTTGCCACTAGCTTGTGTAGGCTTTTGAGAAAGGTTTCTCCATTAGGATATTAAACTTCCT
259 GAAGGTTGCCACCAGCTTGTGTGGGCTTTTGAGAAAGGTTTCTCCACTGGGATATTAAACTTCCT
* ** *
413480 -GAGGATGACATACTTGTCATGTGTGTTTGACTACGAACTTGGTGC-CACCGATATTGGCAAGCT
324 AG-GGATGACATGCTTGTCATGTGTGTTTGACTATAAACTTGGT-CTCACCGATATTGGCAGGCT
* * ** * * *
413543 TGAAAATATTGGTTGCCACTAGCTTGTGTGGGCTTTGGTGTCTAGCTACTTGTAGATGAACTCTA
387 TAAAAATATTGGGTGCCACTAGCTCCTATGGGCTTTGGTGTCTAGCTCCTTGTAGACGAACTCTA
* * * * *
413608 GTGCCATTATATATAGTAGGTGCCAC-AGATTGTGGTCTTCGAAAATGTGGCACTGACTTGTGGA
452 GTGCCATTATATACAGCAGGTGCCACTA-ATTGTGGGCTTCGAAAAGGTGCCACTGACTTGTGGA
* * *
413672 CTTCGAAGAGGTGCCACTGACTAGTGGGCTTTGAGAAGGGATTCGTGTTGACAAATATTTCTTGA
516 CTTCGTAGAGGTGCCACTAACTAGTGGGCTTTGAGAAGGGATTCGTGTTGACAAACATTTCTTGA
* * * *
413737 CGAAGTTTCTAACAAACATTCTCGACAAAAGTTCTAAGG-CTTGACCT-CTTTAGACATGTGTTG
581 TGAAGTTTCTGACAAACGTTCTCGACAAAAGTTCTAAGGCCTT-ACCTAC-TTAGACAGGTGTTG
* * * *
413800 TGGAAGGGTATGACTTCCTATGGATTAGTGAGGGTATGATTAGTGTTTGGCGATGTGCTAGTGTG
644 TGGAAGGGTATGACTTCCTAAGGATTGGTGAGGGTATGATCAGTGTTTGGCGATGTTCTAGTGTG
* * * * **
413865 CAGATTCAAGGCCTGCAACATTAGACTTAAAGATGATATAAAAATGAGAAGAGTGCTAATACGCT
709 CAGATTCAAGGCCTACAACATTAGACTTAAAGATGATATAAGAATGAGAAAAGTGCCAATATTCT
* * * * *
413930 AATTCAAGGTCAGCGATATTGAACTT-AGAGATGCAAAGAATGATAAAGGTGCCAATATGATGAT
774 AATTCAAGGTCAGTGATTTTGGACTTAAG-GATGCGAAGAATGATAAA-GTGCCAATATGCTGAT
* * * * * * *
413994 TCACAGCCAGCAATATCAG-GCTTGAAGATAAGAAGAGTGATAAAGGTGCCAATATGTTGATTCA
837 TTACAGCAAACAATATC-GTGCTTGAAGATGAGAAGAATGATAAAGGTACCAATATGCTGATTCA
* * * ** ** *
414058 AGGGCAGCGATATTAGGC-T-----T---AAAGGTGCCAACGTGTTGCTTCAAGGCCACTGATAT
901 AGGCCAGCGATATTGGGCTTAAAGGTGACAAAGGTGCCAACGTGCTATTTCAAGGCCAGGGACAT
*
414114 TGGACTTAAAGATGACA
966 TGGACTTAAGGATGACA
* * ** *
414131 AAGGTGCCAATATGCTAATCTAAGGCCAGCGATATTGGAC-GTAAGAAAGAAAAAGTTGCCAATG
1 AAGGTGCCAATATGCTGAT-TCAGGCCAATGATATTGGACTG-AAGAAAGAAAAAGATGCCAATG
* * * *
414195 TGCTGATACAAGGCTAGCGACATTGGACTTAAGAAATAAACGGTTTGATAAGTGCCTATGTGTTG
64 TGCTGATTCAAGGCTAGCGACATTGGACTTAAGAAAGAAATGGTTTGACAAGTGCCTATGTGTTG
*
414260 ATTCAAGGCCAATGACATTGGGCTTAGAAGGAGATGCTACCATCTTGTGTGGGTTTTTG-GAAGG
129 ATTCAAGGCCAATGACATTGGGCTTAGAAGGAGATGCTACCATCTTGTGTGGGCTTTTGAG-AGG
* *
414324 GTTGCCACTGACTTTTGTGGGCTTTTGCATTAAAGAAGGTTACCACCGGCTTGTGTGGGCTTTGA
193 GTTGCCACCGACTTGTGTGGGCTTTTGCATTAAAGAAGGTTACCACCGGCTTGTGTGGGCTTTGA
* * **
414389 AG-AGGTTGCCAACAGCTTGTGTGGG-TTTTAAAGAATA-GTTTCTCCACTATAGATATTAAACT
258 AGAAGGTTGCCACCAGCTTGTGTGGGCTTTT-GAGAA-AGGTTTCTCCACT-GGGATATTAAACT
* * * * **
414451 TCCTGGGGATGACATGCGTGTCATGTGTGTTTGGCTATAAACTTAGTCTCACCGATATTGGTGGG
320 TCCTAGGGATGACATGCTTGTCATGTGTGTTTGACTATAAACTTGGTCTCACCGATATTGGCAGG
* * *
414516 CTTAAAAATATTGGGT-CCACTAGCTCCTATAGGCATTGGTGTCTAGCTCATTGTAGACGAACTC
385 CTTAAAAATATTGGGTGCCACTAGCTCCTATGGGCTTTGGTGTCTAGCTCCTTGTAGACGAACTC
* * * * *
414580 TAGTGCCATTAT-TATAGCAGGTACCACTAATTGTGGGATTCGAAAAGGTGCCACTAACTTGTAG
450 TAGTGCCATTATATACAGCAGGTGCCACTAATTGTGGGCTTCGAAAAGGTGCCACTGACTTGTGG
*
414644 ACTTCGTAGAGGTGCCGCTAACTAGTGGGCTTTGAGAAGGGATTCGTGTTGACAAACATTTCTTG
515 ACTTCGTAGAGGTGCCACTAACTAGTGGGCTTTGAGAAGGGATTCGTGTTGACAAACATTTCTTG
* *
414709 ATAAAGTTTCTGACAAATGTTCTCGACAAAAGTTCTAAGGCCTTACCTACTTAGACAGGTGTTGT
580 ATGAAGTTTCTGACAAACGTTCTCGACAAAAGTTCTAAGGCCTTACCTACTTAGACAGGTGTTGT
* * * * * ** *
414774 TGAAGTGTATGGCTTCCTAAGGATTGGTGAGTGTATGACCAAAGTTTGGCGATGTTCTTGTGTGC
645 GGAAGGGTATGACTTCCTAAGGATTGGTGAGGGTATGATCAGTGTTTGGCGATGTTCTAGTGTGC
* * * * * * * *
414839 AGATTCAAGGCTTAGATCGTTAGACTTAAAGATGCTATAAGAATAAAAAAATTGCCAATATTCTA
710 AGATTCAAGGCCTACAACATTAGACTTAAAGATGATATAAGAATGAGAAAAGTGCCAATATTCTA
*
414904 ATTCAAGGT-TGTGATTTTGGACTTAAGGATGCGAAGAATGATTAAAGTGCCAATATGCTGATTT
775 ATTCAAGGTCAGTGATTTTGGACTTAAGGATGCGAAGAATGA-TAAAGTGCCAATATGCTGATTT
* * * *
414968 ATAGCAAACAATATTGTGCCTGAAGATGAGAAGAATGATAAAGGTACCAATATGCTGATTC-ATG
839 ACAGCAAACAATATCGTGCTTGAAGATGAGAAGAATGATAAAGGTACCAATATGCTGATTCAAGG
*
415032 CCTAGTGATATTGGGCTTAAAGGTGACAAAGGTGCCAACGTGCTATTTCAAGGCCAGGGACATTG
904 CC-AGCGATATTGGGCTTAAAGGTGACAAAGGTGCCAACGTGCTATTTCAAGGCCAGGGACATTG
415097 GACTTAAGGATGACA
968 GACTTAAGGATGACA
**
415112 AAGGTGCCAATATGCTGATTGCAGGCCAATGATATTGGACTGAAGAAAGAAAAAAGATGCCAAAA
1 AAGGTGCCAATATGCTGATT-CAGGCCAATGATATTGGACTGAAGAAAG-AAAAAGATGCCAATG
* * * * *
415177 TGTTGATACAAGGCTAGCGACATTGGACTTAAGAAATAAACGGTTTGATAAGTGCCTATGTGTTG
64 TGCTGATTCAAGGCTAGCGACATTGGACTTAAGAAAGAAATGGTTTGACAAGTGCCTATGTGTTG
* *
415242 ATTCAAGGCTAATGACATTGGGCTTAGAAGGAGATGCTACCATCTTGTGTGGGTTTTTG-GAAGG
129 ATTCAAGGCCAATGACATTGGGCTTAGAAGGAGATGCTACCATCTTGTGTGGGCTTTTGAG-AGG
**
415306 GTTGCCACTAACTTGTGTGGGCTTTTGCATTAAAGAAGGTTACCACCGGCTTGTGTGGGCTTTGA
193 GTTGCCACCGACTTGTGTGGGCTTTTGCATTAAAGAAGGTTACCACCGGCTTGTGTGGGCTTTGA
*
415371 AGAAGGTTGCCACCAGTTTGTGTGGGCTTTTGAGAAAGGTTTCTCCACT-GG-TATT-AACTTCC
258 AGAAGGTTGCCACCAGCTTGTGTGGGCTTTTGAGAAAGGTTTCTCCACTGGGATATTAAACTTCC
*
415433 TAGGGATGACATGCTTGTCAT-TCGTGTTTGACTATAAACTTGGTCTCACCGATATTGGCTGGCT
323 TAGGGATGACATGCTTGTCATGT-GTGTTTGACTATAAACTTGGTCTCACCGATATTGGCAGGCT
* *
415497 TAAAAATATTGAGTGCCACTAGCTCCTATGGGCTTTGGTGTCTAGCTCCTTATAGACGAACTCTA
387 TAAAAATATTGGGTGCCACTAGCTCCTATGGGCTTTGGTGTCTAGCTCCTTGTAGACGAACTCTA
* * * **
415562 GTGCCATTGT-TACAGCAGGTGCCATTAATTGTGGTCTTCGAAAAGGTGCCACTGACTTGTACAC
452 GTGCCATTATATACAGCAGGTGCCACTAATTGTGGGCTTCGAAAAGGTGCCACTGACTTGTGGAC
* *
415626 TTCGTAGAGGTGCCACAAACTAGTGGGCTTTGAGAAGGGATTTGTGTTGACAAACATTTCTTGAT
517 TTCGTAGAGGTGCCACTAACTAGTGGGCTTTGAGAAGGGATTCGTGTTGACAAACATTTCTTGAT
*
415691 AAAGTTTCTGACAAACGTTCTCGACAAAAGTTCTAAGGCCTTACCTACTTAGACAGGTGTTGTGG
582 GAAGTTTCTGACAAACGTTCTCGACAAAAGTTCTAAGGCCTTACCTACTTAGACAGGTGTTGTGG
* * * *
415756 AAGGGTATGACTTCTTAAGGATTGGTGAGGGTATGACCAATGTTTGGTGATGTTCTAGTGTGCAG
647 AAGGGTATGACTTCCTAAGGATTGGTGAGGGTATGATCAGTGTTTGGCGATGTTCTAGTGTGCAG
* * * *
415821 ATTCAAGGCCTACATCATTAGACTTAAAGATGATATAAGAATAAGAAAAGTGCCAAAATCCTAAT
712 ATTCAAGGCCTACAACATTAGACTTAAAGATGATATAAGAATGAGAAAAGTGCCAATATTCTAAT
* * *
415886 TCAAGGT-TGTGATTTTGGACTTAAGGATGCGAAGAATGATTAAGGTGCCAATATGCTGATGTAC
777 TCAAGGTCAGTGATTTTGGACTTAAGGATGCGAAGAATGA-TAAAGTGCCAATATGCTGATTTAC
* * *
415950 AGCAAACAATATCATGCTTGAAGATGAGAAGAATGATAAAGGTACCAATATGCTGATTCATGCCC
841 AGCAAACAATATCGTGCTTGAAGATGAGAAGAATGATAAAGGTACCAATATGCTGATTCAAGGCC
* * *
416015 AGTGATATTGGGCTTAAAGGTGATAAAGGTGCCAACGTGCTATTTCAATGCCAGGGACATTGGAC
906 AGCGATATTGGGCTTAAAGGTGACAAAGGTGCCAACGTGCTATTTCAAGGCCAGGGACATTGGAC
416080 TTAAGGATGACA
971 TTAAGGATGACA
**
416092 AAGGTGCCAATATGCTGATTGCAGGCCAATGATATTGGACTGAAGAAAGAAAAAAGATGCCAAAA
1 AAGGTGCCAATATGCTGATT-CAGGCCAATGATATTGGACTGAAGAAAG-AAAAAGATGCCAATG
* * * *
416157 TGCTGATTCAAGGCTTA-CGATATTGGACCTTAAGAAGGAAATGGTTTGAGAAGTGCTTATGTGT
64 TGCTGATTCAAGGC-TAGCGACATTGGA-CTTAAGAAAGAAATGGTTTGACAAGTGCCTATGTGT
* * * *
416221 TGATTCAAGGCCAACGACATTCGGCTTAGAAAGAGATGCTACCATCTTGTATGGGCTTTTGAGAG
127 TGATTCAAGGCCAATGACATTGGGCTTAGAAGGAGATGCTACCATCTTGTGTGGGCTTTTGAGAG
* * * * * * *
416286 GGTTGCCACCGACTTATGTGGGCTTTTGCATTGAAGCAGGTTGCCACCGGCTTATGTGGGGTTTA
192 GGTTGCCACCGACTTGTGTGGGCTTTTGCATTAAAGAAGGTTACCACCGGCTTGTGTGGGCTTTG
* * *
416351 AAGAAAGTTGCCACTAGTTTGTGTGGGCTTTTGAGAAAGGTTTCTCCACTGGG-TATTAAACTTC
257 AAGAAGGTTGCCACCAGCTTGTGTGGGCTTTTGAGAAAGGTTTCTCCACTGGGATATTAAACTTC
* * * * * * * *
416415 CTAGCGATGACATACTTGTTATGCGTGTCT-AGCTATCACCTTGGTTTCACCGATATTGGCAGGC
322 CTAGGGATGACATGCTTGTCATGTGTGTTTGA-CTATAAACTTGGTCTCACCGATATTGGCAGGC
*
416479 TTAAAAATATTAGGTGCCACTAGCTCCTATGGGCTTTGGTGTCTAGCTCCTTGTAGACGAACTCT
386 TTAAAAATATTGGGTGCCACTAGCTCCTATGGGCTTTGGTGTCTAGCTCCTTGTAGACGAACTCT
* *
416544 ACTGCCATCATATATAGCAAATGCCACTGATAATGGTCTTCAAAATGGTGCCACTAACTTGTGGA
451 AGTG-C--CAT-TAT-----AT---AC-----A--G----C---A-GGTGCCACTAA-TTGTGGG
* *
416609 CTTC-ATAGAGGTGCCACTGACTTGTGGACTTCGTAGAGGTGCCA-TGACTAGT-GGCTTTGAGA
488 CTTCGA-AAAGGTGCCACTGACTTGTGGACTTCGTAGAGGTGCCACTAACTAGTGGGCTTTGAGA
* * *
416671 AAGGATTCGTGTTGACAAACATTTCTTGATGAAGTTTCTGGCAAACATTCTCGACAAAA-TTCTA
552 AGGGATTCGTGTTGACAAACATTTCTTGATGAAGTTTCTGACAAACGTTCTCGACAAAAGTTCTA
* * * * * *
416735 AGGCCTTACCTCCTCAAACAGGTGTTGTGGAAGGGTATGACTTCTTATGGATTGGTGAAGGTATG
617 AGGCCTTACCTACTTAGACAGGTGTTGTGGAAGGGTATGACTTCCTAAGGATTGGTGAGGGTATG
416800 ATCAGTGTTTGGCGATGTTCTAGTGTAG-AGATTCAAGGCCTACAACATTAGACTTAAAGATGAT
682 ATCAGTGTTTGGCGATGTTCTAGTGT-GCAGATTCAAGGCCTACAACATTAGACTTAAAGATGAT
* * * * *
416864 ATAAGAATGACAAAAGTGCAAATATTCTAATTCAAGGTCAGTGACTTTAGACTTAAGGATGTGAA
746 ATAAGAATGAGAAAAGTGCCAATATTCTAATTCAAGGTCAGTGATTTTGGACTTAAGGATGCGAA
* * ** * *
416929 GAATGATAAAGGTACCAATATGCTGATTTACAGCCAACAATATCACGCTTGAGGATGAGAAAAAT
811 GAATGATAAA-GTGCCAATATGCTGATTTACAGCAAACAATATCGTGCTTGAAGATGAGAAGAAT
* * * * *
416994 GATAAAGGTACTAATATGCTGATTCGAGACTAGCGATATTGGGCTTAAAGGTGACAAAGGCGCCA
875 GATAAAGGTACCAATATGCTGATTCAAGGCCAGCGATATTGGGCTTAAAGGTGACAAAGGTGCCA
* * **
417059 ACGTGTTGTTTCAAGGCCAATGACATTGGACTTAAGGATGACA
940 ACGTGCTATTTCAAGGCCAGGGACATTGGACTTAAGGATGACA
* * * * *
417102 AAAGTGCAAATATGCTGATTCAAAGCCAATGATATTAGACTTG-AGAAAGAAAAAGATGTCAATG
1 AAGGTGCCAATATGCTGATTC-AGGCCAATGATATTGGAC-TGAAGAAAGAAAAAGATGCCAATG
* * *
417166 TGCTGATTCAAGGCTAGCGACATTGGACTTAAAAAAGAAATGGTTTGGCAAGTGCCTATCTGTTG
64 TGCTGATTCAAGGCTAGCGACATTGGACTTAAGAAAGAAATGGTTTGACAAGTGCCTATGTGTTG
* * * *
417231 ATTCAAGGCCAACGACATTAGGCTTAGAAGGAGATGCTACCATGTTGTGTGGGCTTTTGTGAGGG
129 ATTCAAGGCCAATGACATTGGGCTTAGAAGGAGATGCTACCATCTTGTGTGGGCTTTTGAGAGGG
* * *
417296 TTGCCACCGACTTTTTTGGGCTTTTGAAGAGTTTGCCACCAGCTTGTGTGGGCTTTGAAGAAGGT
194 TTGCCACCGAC----TT--G----T-----G--TG-----GGCTT-T-T--GCATTAAAGAAGGT
* ** * * *
417361 TGCCACCAACTT-TGTGAGCTTTGAAGAAGGTTGCCACCGGCTTGTATGGGCTTTTGAGAAAGG-
233 TACCACCGGCTTGTGTGGGCTTTGAAGAAGGTTGCCACCAGCTTGTGTGGGCTTTTGAGAAAGGT
*** * * * * * *
417424 TTCTCTGTTGGGGATATTAAACTTCCTGGGGATGACATGCTTATGATGCGTGTCTGA-TAATGAA
298 TTCTCCACT-GGGATATTAAACTTCCTAGGGATGACATGCTTGTCATGTGTGTTTGACT-ATAAA
* * * * * * *
417488 CTTGGTGC-CACCGATATTAGCAGGCTTAAAAAGAATGGGTACCACTAGCTCGTGTGGGCTTTGC
361 CTTGGT-CTCACCGATATTGGCAGGCTTAAAAATATTGGGTGCCACTAGCTCCTATGGGCTTTGG
* * * * * * *
417552 TGTCTAGCTCCTTGTAAACGAATTCTAGTGCCATTATATACTGTAGGTGCCACTGATTATGGACT
425 TGTCTAGCTCCTTGTAGACGAACTCTAGTGCCATTATATACAGCAGGTGCCACTAATTGTGGGCT
* * * * * * * * * *
417617 TTGAAAATGTGTCACTAACTTGTGGACTTCGAAGAGGTGCCACTGACCAGTAGGCTTTTAGAAGT
490 TCGAAAAGGTGCCACTGACTTGTGGACTTCGTAGAGGTGCCACTAACTAGTGGGCTTTGAGAAGG
* * * * * * * * *
417682 GATTCATGTTGGCAAATAGTTCTTGACGAAGTTTCTAACAAACGTTCTTGACAAAAGTTTTAAAG
555 GATTCGTGTTGACAAACATTTCTTGATGAAGTTTCTGACAAACGTTCTCGACAAAAGTTCTAAGG
* * * * *
417747 CTTTA--TGACCTTAGACAGGTGTTGTGGAAGGGTATGACTTCATAGGGATTGATGAGGGTACGA
620 CCTTACCT-A-CTTAGACAGGTGTTGTGGAAGGGTATGACTTCCTAAGGATTGGTGAGGGTATGA
* * * * * * * *
417810 TCAGTGTTTGGCAATGTGCCAGAGTGTAGATTCAAGTCCTGCAACATCAGAC-T-----T-ATAT
683 TCAGTGTTTGGCGATGTTCTAGTGTGCAGATTCAAGGCCTACAACATTAGACTTAAAGATGATAT
* * * * * **
417868 AAGAATGAGAAGAGTGCCAATATGCTAATTCAAAGTCGGCGACATTGGACTTAAGGATGCGAAGA
748 AAGAATGAGAAAAGTGCCAATATTCTAATTCAAGGTCAGTGATTTTGGACTTAAGGATGCGAAGA
* * * * * ** *
417933 ACGATAAACATTCCAATATGCTGATTCACAGCCAACAATATCAAGCTTGAAGATGAGAAGAATTA
813 ATGATAAA-GTGCCAATATGCTGATTTACAGCAAACAATATCGTGCTTGAAGATGAGAAGAATGA
* *
417998 TAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGGCTTAAAGGTGACAAAGGTGCCAAT
877 TAAAGGTACCAATATGCTGATTCAAGGCCAGCGATATTGGGCTTAAAGGTGACAAAGGTGCCAAC
*
418063 GTGCTGATTT-AAGGCCAGCGACATTGGACTTAAG
942 GTGCT-ATTTCAAGGCCAGGGACATTGGACTTAAG
418097 AAAGAAATGG
Statistics
Matches: 5108, Mismatches: 661, Indels: 281
0.84 0.11 0.05
Matches are distributed among these distances:
971 4 0.00
972 106 0.02
973 388 0.08
974 379 0.07
975 517 0.10
976 233 0.05
978 3 0.00
979 78 0.02
980 625 0.12
981 288 0.06
982 601 0.12
983 480 0.09
984 106 0.02
985 4 0.00
986 3 0.00
987 2 0.00
993 1 0.00
996 2 0.00
1001 1 0.00
1002 199 0.04
1003 5 0.00
1006 42 0.01
1007 20 0.00
1008 165 0.03
1009 295 0.06
1010 277 0.05
1011 19 0.00
1012 47 0.01
1015 1 0.00
1018 1 0.00
1022 2 0.00
1023 1 0.00
1025 8 0.00
1030 14 0.00
1031 8 0.00
1032 14 0.00
1033 91 0.02
1034 286 0.06
1035 3 0.00
ACGTcount: A:0.29, C:0.16, G:0.25, T:0.29
Consensus pattern (982 bp):
AAGGTGCCAATATGCTGATTCAGGCCAATGATATTGGACTGAAGAAAGAAAAAGATGCCAATGTG
CTGATTCAAGGCTAGCGACATTGGACTTAAGAAAGAAATGGTTTGACAAGTGCCTATGTGTTGAT
TCAAGGCCAATGACATTGGGCTTAGAAGGAGATGCTACCATCTTGTGTGGGCTTTTGAGAGGGTT
GCCACCGACTTGTGTGGGCTTTTGCATTAAAGAAGGTTACCACCGGCTTGTGTGGGCTTTGAAGA
AGGTTGCCACCAGCTTGTGTGGGCTTTTGAGAAAGGTTTCTCCACTGGGATATTAAACTTCCTAG
GGATGACATGCTTGTCATGTGTGTTTGACTATAAACTTGGTCTCACCGATATTGGCAGGCTTAAA
AATATTGGGTGCCACTAGCTCCTATGGGCTTTGGTGTCTAGCTCCTTGTAGACGAACTCTAGTGC
CATTATATACAGCAGGTGCCACTAATTGTGGGCTTCGAAAAGGTGCCACTGACTTGTGGACTTCG
TAGAGGTGCCACTAACTAGTGGGCTTTGAGAAGGGATTCGTGTTGACAAACATTTCTTGATGAAG
TTTCTGACAAACGTTCTCGACAAAAGTTCTAAGGCCTTACCTACTTAGACAGGTGTTGTGGAAGG
GTATGACTTCCTAAGGATTGGTGAGGGTATGATCAGTGTTTGGCGATGTTCTAGTGTGCAGATTC
AAGGCCTACAACATTAGACTTAAAGATGATATAAGAATGAGAAAAGTGCCAATATTCTAATTCAA
GGTCAGTGATTTTGGACTTAAGGATGCGAAGAATGATAAAGTGCCAATATGCTGATTTACAGCAA
ACAATATCGTGCTTGAAGATGAGAAGAATGATAAAGGTACCAATATGCTGATTCAAGGCCAGCGA
TATTGGGCTTAAAGGTGACAAAGGTGCCAACGTGCTATTTCAAGGCCAGGGACATTGGACTTAAG
GATGACA
Found at i:416129 original size:52 final size:52
Alignment explanation
Indices: 415982--416190 Score: 163
Period size: 52 Copynumber: 4.0 Consensus size: 52
415972 GATGAGAAGA
* * * * *
415982 ATGATAAAGGTACCAATATGCTGATTCATGCCCAGTGATATTGGGCTTAAAGG
1 ATGATAAAGGTGCCAATATGCTGATTCAAGGCCAATGATATTGGACTT-AAGG
** * ** *
416035 -TGATAAAGGTGCCAACGTGCT-ATTTCAATGCCAGGGACATTGGACTTAAGG
1 ATGATAAAGGTGCCAATATGCTGA-TTCAAGGCCAATGATATTGGACTTAAGG
* * *
416086 ATGACAAAGGTGCCAATATGCTGATTGC-AGGCCAATGATATTGGACTGAAGA
1 ATGATAAAGGTGCCAATATGCTGATT-CAAGGCCAATGATATTGGACTTAAGG
* * * * ** *
416138 AAGAAAAAAGATGCCAAAATGCTGATTCAAGGCTTACGATATTGGACCTTAAG
1 ATG-ATAAAGGTGCCAATATGCTGATTCAAGGCCAATGATATTGGA-CTTAAG
416191 AAGGAAATGG
Statistics
Matches: 123, Mismatches: 26, Indels: 13
0.76 0.16 0.08
Matches are distributed among these distances:
51 5 0.04
52 77 0.63
53 36 0.29
54 5 0.04
ACGTcount: A:0.34, C:0.16, G:0.25, T:0.25
Consensus pattern (52 bp):
ATGATAAAGGTGCCAATATGCTGATTCAAGGCCAATGATATTGGACTTAAGG
Found at i:416308 original size:32 final size:36
Alignment explanation
Indices: 416272--416345 Score: 93
Period size: 38 Copynumber: 2.1 Consensus size: 36
416262 CCATCTTGTA
416272 TGGGCTTTTG-A-G-AG-GGTTGCCACCGACTTATG
1 TGGGCTTTTGCATGAAGAGGTTGCCACCGACTTATG
*
416304 TGGGCTTTTGCATTGAAGCAGGTTGCCACCGGCTTATG
1 TGGGCTTTTGCA-TGAAG-AGGTTGCCACCGACTTATG
416342 TGGG
1 TGGG
416346 GTTTAAAGAA
Statistics
Matches: 35, Mismatches: 1, Indels: 6
0.83 0.02 0.14
Matches are distributed among these distances:
32 10 0.29
33 1 0.03
35 1 0.03
36 2 0.06
38 21 0.60
ACGTcount: A:0.15, C:0.19, G:0.35, T:0.31
Consensus pattern (36 bp):
TGGGCTTTTGCATGAAGAGGTTGCCACCGACTTATG
Found at i:416621 original size:28 final size:28
Alignment explanation
Indices: 416590--416652 Score: 108
Period size: 28 Copynumber: 2.2 Consensus size: 28
416580 TCTTCAAAAT
416590 GGTGCCACTAACTTGTGGACTTCATAGA
1 GGTGCCACTAACTTGTGGACTTCATAGA
* *
416618 GGTGCCACTGACTTGTGGACTTCGTAGA
1 GGTGCCACTAACTTGTGGACTTCATAGA
416646 GGTGCCA
1 GGTGCCA
416653 TGACTAGTGG
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
28 33 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.27
Consensus pattern (28 bp):
GGTGCCACTAACTTGTGGACTTCATAGA
Found at i:417124 original size:52 final size:52
Alignment explanation
Indices: 417068--417205 Score: 145
Period size: 52 Copynumber: 2.7 Consensus size: 52
417058 AACGTGTTGT
* *
417068 TTCAAGGCCAATGACATTGGACTTAAGGATGACAAAAG-TG-CAAATATGCTGA
1 TTCAAGGCCAATGACATTGGACTTAAGAAAGA-AAAAGATGTC-AATATGCTGA
* * * * *
417120 TTCAAAGCCAATGATATTAGACTTGAGAAAGAAAAAGATGTCAATGTGCTGA
1 TTCAAGGCCAATGACATTGGACTTAAGAAAGAAAAAGATGTCAATATGCTGA
* ** *
417172 TTCAAGGCTAGCGACATTGGACTTAAAAAAGAAA
1 TTCAAGGCCAATGACATTGGACTTAAGAAAGAAA
417206 TGGTTTGGCA
Statistics
Matches: 69, Mismatches: 15, Indels: 4
0.78 0.17 0.05
Matches are distributed among these distances:
51 5 0.07
52 63 0.91
53 1 0.01
ACGTcount: A:0.41, C:0.14, G:0.22, T:0.23
Consensus pattern (52 bp):
TTCAAGGCCAATGACATTGGACTTAAGAAAGAAAAAGATGTCAATATGCTGA
Found at i:417356 original size:31 final size:32
Alignment explanation
Indices: 417275--417414 Score: 144
Period size: 32 Copynumber: 4.4 Consensus size: 32
417265 TGCTACCATG
* *
417275 TTGTGTGGGCTTTTG-TGAGGGTTGCCACC-GAC
1 TTGTGTGGGC-TTTGAAGAAGGTTGCCACCAG-C
* * *
417307 TTTTTTGGGCTTTTGAAG-AGTTTGCCACCAGC
1 TTGTGTGGGC-TTTGAAGAAGGTTGCCACCAGC
*
417339 TTGTGTGGGCTTTGAAGAAGGTTGCCACCAAC
1 TTGTGTGGGCTTTGAAGAAGGTTGCCACCAGC
* *
417371 TT-TGTGAGCTTTGAAGAAGGTTGCCACCGGC
1 TTGTGTGGGCTTTGAAGAAGGTTGCCACCAGC
*
417402 TTGTATGGGCTTT
1 TTGTGTGGGCTTT
417415 TGAGAAAGGT
Statistics
Matches: 90, Mismatches: 14, Indels: 8
0.80 0.12 0.07
Matches are distributed among these distances:
31 35 0.39
32 53 0.59
33 2 0.02
ACGTcount: A:0.16, C:0.18, G:0.31, T:0.35
Consensus pattern (32 bp):
TTGTGTGGGCTTTGAAGAAGGTTGCCACCAGC
Found at i:417414 original size:63 final size:64
Alignment explanation
Indices: 417294--417414 Score: 165
Period size: 63 Copynumber: 1.9 Consensus size: 64
417284 CTTTTGTGAG
* * * * *
417294 GGTTGCCACCGACTTTTTTGGGCTTTTGAAGAGTTTGCCACCAGCTTGTGTGGGCTTTGAAGAA
1 GGTTGCCACCAACTTTTGTGAGCTTTTGAAGAGGTTGCCACCAGCTTGTATGGGCTTTGAAGAA
*
417358 GGTTGCCACCAAC-TTTGTGAGC-TTTGAAGAAGGTTGCCACCGGCTTGTATGGGCTTT
1 GGTTGCCACCAACTTTTGTGAGCTTTTGAAG-AGGTTGCCACCAGCTTGTATGGGCTTT
417415 TGAGAAAGGT
Statistics
Matches: 50, Mismatches: 6, Indels: 3
0.85 0.10 0.05
Matches are distributed among these distances:
62 7 0.14
63 31 0.62
64 12 0.24
ACGTcount: A:0.17, C:0.20, G:0.30, T:0.33
Consensus pattern (64 bp):
GGTTGCCACCAACTTTTGTGAGCTTTTGAAGAGGTTGCCACCAGCTTGTATGGGCTTTGAAGAA
Found at i:417424 original size:64 final size:65
Alignment explanation
Indices: 417275--417425 Score: 177
Period size: 64 Copynumber: 2.4 Consensus size: 65
417265 TGCTACCATG
* * * * * *
417275 TTGTGTGGGCTTTTGTG-AGGGTTGCCACCGACTTTTTTGGGCTTTTGAAGAGTTTGCCACCAGC
1 TTGTGTGGGCTTTTGAGAAAGGTTGCCACCAACTTTTGTGAGCTTTTGAAGAGGTTGCCACCAGC
*
417339 TTGTGTGGGC-TTTGA-AGAAGGTTGCCACCAAC-TTTGTGAGC-TTTGAAGAAGGTTGCCACCG
1 TTGTGTGGGCTTTTGAGA-AAGGTTGCCACCAACTTTTGTGAGCTTTTGAAG-AGGTTGCCACCA
417400 GC
64 GC
*
417402 TTGTATGGGCTTTTGAGAAAGGTT
1 TTGTGTGGGCTTTTGAGAAAGGTT
417426 CTCTGTTGGG
Statistics
Matches: 74, Mismatches: 8, Indels: 10
0.80 0.09 0.11
Matches are distributed among these distances:
62 7 0.09
63 32 0.43
64 34 0.46
65 1 0.01
ACGTcount: A:0.17, C:0.17, G:0.32, T:0.34
Consensus pattern (65 bp):
TTGTGTGGGCTTTTGAGAAAGGTTGCCACCAACTTTTGTGAGCTTTTGAAGAGGTTGCCACCAGC
Found at i:417660 original size:28 final size:27
Alignment explanation
Indices: 417596--417660 Score: 67
Period size: 28 Copynumber: 2.4 Consensus size: 27
417586 TATATACTGT
* *
417596 AGGTGCCACTGATTATGGACTTTGAAA
1 AGGTGCCACTAATTATGGACTTCGAAA
* * * *
417623 ATGTGTCACTAACTTGTGGACTTCGAAG
1 AGGTGCCACTAA-TTATGGACTTCGAAA
417651 AGGTGCCACT
1 AGGTGCCACT
417661 GACCAGTAGG
Statistics
Matches: 29, Mismatches: 8, Indels: 1
0.76 0.21 0.03
Matches are distributed among these distances:
27 9 0.31
28 20 0.69
ACGTcount: A:0.26, C:0.18, G:0.26, T:0.29
Consensus pattern (27 bp):
AGGTGCCACTAATTATGGACTTCGAAA
Found at i:418211 original size:32 final size:31
Alignment explanation
Indices: 418173--418314 Score: 115
Period size: 32 Copynumber: 4.5 Consensus size: 31
418163 AGCTACCACA
*
418173 TTGTGTGGGCTTTTGAGATGGTTGCC-CCTAAC
1 TTGTGTGGGCTTTTAAGA-GGTTGCCACC-AAC
* *
418205 TTGTGTGGACTTTTAAAGAGGTTGCCACCAGC
1 TTGTGTGGGCTTTT-AAGAGGTTGCCACCAAC
* * **
418237 TTGTGTGGGCTTTTAAGAAGGTTGTCACTAGT
1 TTGTGTGGGCTTTTAAG-AGGTTGCCACCAAC
* * * *
418269 TTATGTGGGCTTTGAAGAAGGTTGCTACCAGC
1 TTGTGTGGGCTTTTAAG-AGGTTGCCACCAAC
* *
418301 TTATGTGTGCTTTT
1 TTGTGTGGGCTTTT
418315 GAGAAAGGTT
Statistics
Matches: 92, Mismatches: 15, Indels: 6
0.81 0.13 0.05
Matches are distributed among these distances:
31 3 0.03
32 84 0.91
33 5 0.05
ACGTcount: A:0.18, C:0.15, G:0.30, T:0.38
Consensus pattern (31 bp):
TTGTGTGGGCTTTTAAGAGGTTGCCACCAAC
Found at i:418276 original size:64 final size:64
Alignment explanation
Indices: 418173--418324 Score: 171
Period size: 64 Copynumber: 2.4 Consensus size: 64
418163 AGCTACCACA
* * *
418173 TTGTGTGGGCTTTTGAGATGGTTGCCCCTAACTTGTGTGGACTTTTAAAG-AGGTTGCCACCAGC
1 TTGTGTGGGCTTTTGAGAAGGTTGCCACTAACTTATGTGGAC-TTTAAAGAAGGTTGCCACCAGC
* * ** * * *
418237 TTGTGTGGGCTTTTAAGAAGGTTGTCACTAGTTTATGTGGGCTTTGAAGAAGGTTGCTACCAGC
1 TTGTGTGGGCTTTTGAGAAGGTTGCCACTAACTTATGTGGACTTTAAAGAAGGTTGCCACCAGC
* *
418301 TTATGTGTGCTTTTGAGAAAGGTT
1 TTGTGTGGGCTTTTGAG-AAGGTT
418325 TCTCTACTAG
Statistics
Matches: 73, Mismatches: 13, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
63 6 0.08
64 61 0.84
65 6 0.08
ACGTcount: A:0.19, C:0.14, G:0.30, T:0.37
Consensus pattern (64 bp):
TTGTGTGGGCTTTTGAGAAGGTTGCCACTAACTTATGTGGACTTTAAAGAAGGTTGCCACCAGC
Found at i:419683 original size:13 final size:13
Alignment explanation
Indices: 419665--419690 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
419655 CAATTTTTTG
419665 TGTATCGATACAT
1 TGTATCGATACAT
419678 TGTATCGATACAT
1 TGTATCGATACAT
419691 ATTTGCTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:419706 original size:32 final size:33
Alignment explanation
Indices: 419645--419708 Score: 96
Period size: 32 Copynumber: 2.0 Consensus size: 33
419635 TACAAGCTAA
*
419645 TGTATCGATACAATTTTTTGTGTATCGATACAT
1 TGTATCGATACAATTATTTGTGTATCGATACAT
419678 TGTATCGATAC-A-TATTTGCTGTATCGATACA
1 TGTATCGATACAATTATTTG-TGTATCGATACA
419709 AGTTTGGCTA
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
31 5 0.17
32 13 0.45
33 11 0.38
ACGTcount: A:0.28, C:0.14, G:0.16, T:0.42
Consensus pattern (33 bp):
TGTATCGATACAATTATTTGTGTATCGATACAT
Found at i:422255 original size:13 final size:13
Alignment explanation
Indices: 422237--422262 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
422227 ATAATCACCC
422237 TGTATCGATACAA
1 TGTATCGATACAA
422250 TGTATCGATACAA
1 TGTATCGATACAA
422263 AGAAAAATGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:427713 original size:13 final size:13
Alignment explanation
Indices: 427695--427752 Score: 62
Period size: 13 Copynumber: 4.0 Consensus size: 13
427685 CAATTTTTTG
427695 TGTATCGATACAT
1 TGTATCGATACAT
427708 TGTATCGATACATATTT
1 TGTATCGATAC--A--T
427725 GCTGTATCGATACAT
1 --TGTATCGATACAT
427740 TGTATCGATACAT
1 TGTATCGATACAT
427753 ATTTGCTGTA
Statistics
Matches: 39, Mismatches: 0, Indels: 12
0.76 0.00 0.24
Matches are distributed among these distances:
13 24 0.62
15 2 0.05
17 2 0.05
19 11 0.28
ACGTcount: A:0.29, C:0.16, G:0.16, T:0.40
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:427736 original size:32 final size:32
Alignment explanation
Indices: 427675--427770 Score: 158
Period size: 32 Copynumber: 3.0 Consensus size: 32
427665 TACAAGCTAA
*
427675 TGTATCGATACAATTTTTTG-TGTATCGATACAT
1 TGTATCGATAC-A-TATTTGCTGTATCGATACAT
427708 TGTATCGATACATATTTGCTGTATCGATACAT
1 TGTATCGATACATATTTGCTGTATCGATACAT
427740 TGTATCGATACATATTTGCTGTATCGATACA
1 TGTATCGATACATATTTGCTGTATCGATACA
427771 AGTTTGGCTA
Statistics
Matches: 61, Mismatches: 1, Indels: 3
0.94 0.02 0.05
Matches are distributed among these distances:
31 5 0.08
32 45 0.74
33 11 0.18
ACGTcount: A:0.28, C:0.15, G:0.16, T:0.42
Consensus pattern (32 bp):
TGTATCGATACATATTTGCTGTATCGATACAT
Found at i:427776 original size:19 final size:19
Alignment explanation
Indices: 427708--427770 Score: 84
Period size: 19 Copynumber: 3.6 Consensus size: 19
427698 ATCGATACAT
427708 TGTATCGATACATATTTGC
1 TGTATCGATACATATTTGC
427727 TGTATCGATAC--A--T--
1 TGTATCGATACATATTTGC
427740 TGTATCGATACATATTTGC
1 TGTATCGATACATATTTGC
427759 TGTATCGATACA
1 TGTATCGATACA
427771 AGTTTGGCTA
Statistics
Matches: 38, Mismatches: 0, Indels: 12
0.76 0.00 0.24
Matches are distributed among these distances:
13 11 0.29
15 2 0.05
17 2 0.05
19 23 0.61
ACGTcount: A:0.29, C:0.16, G:0.16, T:0.40
Consensus pattern (19 bp):
TGTATCGATACATATTTGC
Found at i:428449 original size:32 final size:32
Alignment explanation
Indices: 428411--428563 Score: 170
Period size: 32 Copynumber: 4.8 Consensus size: 32
428401 ATGCTACCAT
428411 CTTGTGTGGGCTTTTGAGAAGGTTGCCA-AAG
1 CTTGTGTGGGCTTTTGAGAAGGTTGCCACAAG
* *
428442 ACTTGTGTAGGCTTTT-AAAGAGGTTGCCACAAG
1 -CTTGTGTGGGCTTTTGAGA-AGGTTGCCACAAG
*
428475 CTTGTGTGGGC-TTTGAAGAAGGTTGCCACCAG
1 CTTGTGTGGGCTTTTG-AGAAGGTTGCCACAAG
* *
428507 CTTGTGTAGGC-TTTGAAGAAGGTTGCCACTAG
1 CTTGTGTGGGCTTTTG-AGAAGGTTGCCACAAG
* *
428539 CTTCTATGGGCTTTTGAGAAAGGTT
1 CTTGTGTGGGCTTTTGAG-AAGGTT
428564 TCTCCACTGG
Statistics
Matches: 105, Mismatches: 10, Indels: 11
0.83 0.08 0.09
Matches are distributed among these distances:
31 5 0.05
32 85 0.81
33 15 0.14
ACGTcount: A:0.22, C:0.15, G:0.31, T:0.32
Consensus pattern (32 bp):
CTTGTGTGGGCTTTTGAGAAGGTTGCCACAAG
Found at i:428485 original size:64 final size:64
Alignment explanation
Indices: 428411--428563 Score: 204
Period size: 64 Copynumber: 2.4 Consensus size: 64
428401 ATGCTACCAT
428411 CTTGTGTGGGCTTTTGAGAAGGTTGCCA-AAGACTTGTGTAGGCTTTTAAAG-AGGTTGCCACAA
1 CTTGTGTGGGCTTTTGAGAAGGTTGCCACAAG-CTTGTGTAGGC-TTTAAAGAAGGTTGCCACAA
428474 G
64 G
* * *
428475 CTTGTGTGGGC-TTTGAAGAAGGTTGCCACCAGCTTGTGTAGGCTTTGAAGAAGGTTGCCACTAG
1 CTTGTGTGGGCTTTTG-AGAAGGTTGCCACAAGCTTGTGTAGGCTTTAAAGAAGGTTGCCACAAG
* *
428539 CTTCTATGGGCTTTTGAGAAAGGTT
1 CTTGTGTGGGCTTTTGAG-AAGGTT
428564 TCTCCACTGG
Statistics
Matches: 79, Mismatches: 5, Indels: 9
0.85 0.05 0.10
Matches are distributed among these distances:
63 10 0.13
64 57 0.72
65 12 0.15
ACGTcount: A:0.22, C:0.15, G:0.31, T:0.32
Consensus pattern (64 bp):
CTTGTGTGGGCTTTTGAGAAGGTTGCCACAAGCTTGTGTAGGCTTTAAAGAAGGTTGCCACAAG
Found at i:428793 original size:28 final size:27
Alignment explanation
Indices: 428735--428817 Score: 98
Period size: 28 Copynumber: 3.0 Consensus size: 27
428725 TATATACTGC
* *
428735 AGGTGCCACTGA-TTGTAGACTTCGGAA
1 AGGTGCCACTGACTTGTGGACTT-TGAA
428762 AGGTGCCACTGACTTGTGGACTTTGAA
1 AGGTGCCACTGACTTGTGGACTTTGAA
*
428789 GAGGTGCCACTGACTAGTGTG-CTTTGAA
1 -AGGTGCCACTGACTTGTG-GACTTTGAA
428817 A
1 A
428818 AGGGATTCGT
Statistics
Matches: 50, Mismatches: 3, Indels: 6
0.85 0.05 0.10
Matches are distributed among these distances:
27 16 0.32
28 33 0.66
29 1 0.02
ACGTcount: A:0.24, C:0.18, G:0.30, T:0.28
Consensus pattern (27 bp):
AGGTGCCACTGACTTGTGGACTTTGAA
Found at i:437203 original size:16 final size:17
Alignment explanation
Indices: 437184--437216 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
437174 GCTTATGATG
*
437184 AATTA-TGTTGATGAAT
1 AATTAGTGTGGATGAAT
437200 AATTAGTGTGGATGAAT
1 AATTAGTGTGGATGAAT
437217 GTGGCAAAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 5 0.33
17 10 0.67
ACGTcount: A:0.36, C:0.00, G:0.24, T:0.39
Consensus pattern (17 bp):
AATTAGTGTGGATGAAT
Found at i:443764 original size:20 final size:20
Alignment explanation
Indices: 443739--443777 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
443729 ATTTGCTTAC
443739 ATGTATCGATACATTTAAGA
1 ATGTATCGATACATTTAAGA
443759 ATGTATCGATACATTTAAG
1 ATGTATCGATACATTTAAG
443778 TCAAAACCTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.38, C:0.10, G:0.15, T:0.36
Consensus pattern (20 bp):
ATGTATCGATACATTTAAGA
Found at i:445169 original size:97 final size:98
Alignment explanation
Indices: 444953--445199 Score: 229
Period size: 97 Copynumber: 2.5 Consensus size: 98
444943 CAAAATTTGT
* * * * * * *
444953 ATTCATCGAGGATACTTCAACCTCT-TTCCTTTGAGGGGATACTCCAAACCCATTTTTAAACCTT
1 ATTCATCGGGGATACTCCAACCT-TATTCCTTCGA-GGGATACTCCAACCCCACTCTTAAACCTC
* *
445017 GTCAAGATTTGAAACTTATTCTTGCCTAAATTATC
64 ATCAAGATTTGAAACTTATTCTCGCCTAAATTATC
** * *
445052 ATTC-TTAGGGACACTCCAACCTTATTCCTTCGAGGAGATACTCCAACCCCGCTCTTAAA-CTCA
1 ATTCATCGGGGATACTCCAACCTTATTCCTTCGAGG-GATACTCCAACCCCACTCTTAAACCTCA
* *
445115 TCAA-AGTTT-AAATCTTATTCTCGCTTAAATTGTC
65 TCAAGA-TTTGAAA-CTTATTCTCGCCTAAATTATC
**
445149 A-TCATCGGGGATACTCCAACCCCA-TCCTTCCGAAGGGATACTCCAACCCCA
1 ATTCATCGGGGATACTCCAACCTTATTCCTT-CG-AGGGATACTCCAACCCCA
445200 TCCTTCCGAA
Statistics
Matches: 120, Mismatches: 21, Indels: 16
0.76 0.13 0.10
Matches are distributed among these distances:
96 11 0.09
97 62 0.52
98 43 0.36
99 4 0.03
ACGTcount: A:0.28, C:0.28, G:0.13, T:0.31
Consensus pattern (98 bp):
ATTCATCGGGGATACTCCAACCTTATTCCTTCGAGGGATACTCCAACCCCACTCTTAAACCTCAT
CAAGATTTGAAACTTATTCTCGCCTAAATTATC
Found at i:445194 original size:27 final size:27
Alignment explanation
Indices: 445156--445223 Score: 136
Period size: 27 Copynumber: 2.5 Consensus size: 27
445146 GTCATCATCG
445156 GGGATACTCCAACCCCATCCTTCCGAA
1 GGGATACTCCAACCCCATCCTTCCGAA
445183 GGGATACTCCAACCCCATCCTTCCGAA
1 GGGATACTCCAACCCCATCCTTCCGAA
445210 GGGATACTCCAACC
1 GGGATACTCCAACC
445224 TCATTTTTCA
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 41 1.00
ACGTcount: A:0.26, C:0.40, G:0.16, T:0.18
Consensus pattern (27 bp):
GGGATACTCCAACCCCATCCTTCCGAA
Found at i:451139 original size:33 final size:33
Alignment explanation
Indices: 451102--451168 Score: 107
Period size: 33 Copynumber: 2.0 Consensus size: 33
451092 TGAGAGTTGA
*
451102 TCACTTCACTTTTGCAGCACATGAATGAGCACT
1 TCACTTCACTCTTGCAGCACATGAATGAGCACT
* *
451135 TCACTTCACTCTTGTAGCACATGGATGAGCACT
1 TCACTTCACTCTTGCAGCACATGAATGAGCACT
451168 T
1 T
451169 TAGTGCACTT
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
33 31 1.00
ACGTcount: A:0.25, C:0.27, G:0.16, T:0.31
Consensus pattern (33 bp):
TCACTTCACTCTTGCAGCACATGAATGAGCACT
Found at i:451505 original size:22 final size:23
Alignment explanation
Indices: 451469--451520 Score: 79
Period size: 22 Copynumber: 2.3 Consensus size: 23
451459 AGAAATTTTT
451469 GAAAATAAACTTTTATCAAGGGG-
1 GAAAA-AAACTTTTATCAAGGGGA
*
451492 GAAAAAAATTTTTATCAAGGGGA
1 GAAAAAAACTTTTATCAAGGGGA
451515 GAAAAA
1 GAAAAA
451521 CGAAACTTTG
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
22 16 0.59
23 11 0.41
ACGTcount: A:0.50, C:0.06, G:0.21, T:0.23
Consensus pattern (23 bp):
GAAAAAAACTTTTATCAAGGGGA
Found at i:452646 original size:29 final size:30
Alignment explanation
Indices: 452582--452646 Score: 82
Period size: 30 Copynumber: 2.2 Consensus size: 30
452572 CTTTAAAAGA
*
452582 TAAA-GTTTGTAAGGTTATACCTTTGCCTGG
1 TAAAGGTTTGAAAGGTTATACCTTTGCCT-G
*
452612 T-AAGGTTTGAAAGGTTATACTTTTGCCT-
1 TAAAGGTTTGAAAGGTTATACCTTTGCCTG
452640 TAAAGGT
1 TAAAGGT
452647 AATTAATTCT
Statistics
Matches: 31, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
28 1 0.03
29 7 0.23
30 23 0.74
ACGTcount: A:0.26, C:0.11, G:0.23, T:0.40
Consensus pattern (30 bp):
TAAAGGTTTGAAAGGTTATACCTTTGCCTG
Found at i:455785 original size:32 final size:32
Alignment explanation
Indices: 455730--455818 Score: 90
Period size: 32 Copynumber: 2.8 Consensus size: 32
455720 TTGCCACTGA
* **
455730 CTTGTGTAGGCTTTTAA-AGAGGTTACTGCCAG
1 CTTGTGTGGGCTTTTAAGA-AGGTTACCACCAG
* * *
455762 CTTGTGTGGGCTTTGAAGAAGGTTGCCACTAG
1 CTTGTGTGGGCTTTTAAGAAGGTTACCACCAG
*
455794 CTTGTGTGTGCTTTTAAGAAAGGTT
1 CTTGTGTGGGCTTTTAAG-AAGGTT
455819 TCTCCACTAG
Statistics
Matches: 47, Mismatches: 8, Indels: 3
0.81 0.14 0.05
Matches are distributed among these distances:
32 40 0.85
33 7 0.15
ACGTcount: A:0.20, C:0.13, G:0.30, T:0.36
Consensus pattern (32 bp):
CTTGTGTGGGCTTTTAAGAAGGTTACCACCAG
Found at i:456039 original size:28 final size:27
Alignment explanation
Indices: 455990--456052 Score: 81
Period size: 28 Copynumber: 2.3 Consensus size: 27
455980 TATATACAGC
* **
455990 AGGTGCCACTGATTGTGGACTTTGAAA
1 AGGTGCCACAGATTGTGGACTTCAAAA
*
456017 AGGTGCCACAGACTTGTGTACTTCAAAA
1 AGGTGCCACAGA-TTGTGGACTTCAAAA
456045 AGGTGCCA
1 AGGTGCCA
456053 TTAACTAATG
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
27 11 0.35
28 20 0.65
ACGTcount: A:0.29, C:0.19, G:0.27, T:0.25
Consensus pattern (27 bp):
AGGTGCCACAGATTGTGGACTTCAAAA
Found at i:456529 original size:20 final size:20
Alignment explanation
Indices: 456506--456578 Score: 101
Period size: 20 Copynumber: 3.6 Consensus size: 20
456496 ACAATTCAAA
456506 GTATCGATACATGTTGCAAT
1 GTATCGATACATGTTGCAAT
****
456526 GTATCGATACATGAAAAAGAT
1 GTATCGATACATGTTGCA-AT
456547 GTATCGATACATGTTGCAAT
1 GTATCGATACATGTTGCAAT
456567 GTATCGATACAT
1 GTATCGATACAT
456579 AAAAAAAGAT
Statistics
Matches: 44, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
20 28 0.64
21 16 0.36
ACGTcount: A:0.36, C:0.14, G:0.19, T:0.32
Consensus pattern (20 bp):
GTATCGATACATGTTGCAAT
Found at i:456557 original size:41 final size:42
Alignment explanation
Indices: 456506--456600 Score: 174
Period size: 41 Copynumber: 2.3 Consensus size: 42
456496 ACAATTCAAA
*
456506 GTATCGATACATGTTGCAATGTATCGATACAT-GAAAAAGAT
1 GTATCGATACATGTTGCAATGTATCGATACATAAAAAAAGAT
456547 GTATCGATACATGTTGCAATGTATCGATACATAAAAAAAGAT
1 GTATCGATACATGTTGCAATGTATCGATACATAAAAAAAGAT
456589 GTATCGATACAT
1 GTATCGATACAT
456601 TTCTTGGCAG
Statistics
Matches: 52, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
41 32 0.62
42 20 0.38
ACGTcount: A:0.40, C:0.13, G:0.18, T:0.29
Consensus pattern (42 bp):
GTATCGATACATGTTGCAATGTATCGATACATAAAAAAAGAT
Found at i:456657 original size:13 final size:13
Alignment explanation
Indices: 456639--456664 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
456629 TACAGCAAGT
456639 ATGTATCGATACA
1 ATGTATCGATACA
456652 ATGTATCGATACA
1 ATGTATCGATACA
456665 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:457949 original size:370 final size:373
Alignment explanation
Indices: 457260--458010 Score: 1348
Period size: 370 Copynumber: 2.0 Consensus size: 373
457250 CGAGGAGAGA
457260 GGACGTAGGTGCCGTGTTTGGACCGAACCTCTATAAATATCTTGTGTCAATTTTTCCTTCCCTAA
1 GGACGTAGGTGCCGTGTTTGGACCGAACCTCTATAAATATCTTGTGTCAATTTTTCCTTCCCTAA
457325 TCTCTTTTCATTTCGAATTGTGTTGTTTCAAAACCCGAAAATTCGAAAAGAACCAATTCACCCCC
66 TCTC-TTT-ATTTCGAATTGTGTTGTTTCAAAACCCGAAAATTCGAAAAGAACCAATTCACCCCC
**
457390 CCTCTTGGTTCGTTATTTGATAAGCTTTCAATTGGTATCAGAGCTTAACCTCCGTTCAACGGATT
129 CCTCTTGGTTCGTTA--T-ATAAGCTTTCAATTGGTATCAGAGCCAAACCTCCGTTCAACGGATT
* * * *
457455 CACACCCGGGGGAGATGATCAATTTCAAATCAAGAATGGAAGGTGCAATGATCAACAACTCAATT
191 CACACCCGGGAGAGACGATCAAATTCAAATCAAGAATGGAAGGTGCAATGATCAACAACTCAATC
457520 TTGATGAACCAAGAAGAAATGTGTCTCATGGCATTAGAAAACAACTCGAATGCCATAGGACTCGA
256 TTGATGAACCAAGAAGAAATGTGTCTCATGGCATTAGAAAACAACTCGAATGCCATAGGACTCGA
457585 GGGACACTCAACCATGAGGCCTCCATACTTCAACGGTGACAACTTCTCATATT
321 GGGACACTCAACCATGAGGCCTCCATACTTCAACGGTGACAACTTCTCATATT
457638 GGACGTAGGTGCCGTGTTTGGACCGAACCTCTATAAATATCTTGTGTCAATTTTTCCTTCCCTAA
1 GGACGTAGGTGCCGTGTTTGGACCGAACCTCTATAAATATCTTGTGTCAATTTTTCCTTCCCTAA
457703 TCTC-TT-TTTCGAATTGTGTTGTTTCAAAA-CCGAAAATTCGAAAAGAACCAATTCACCCCCCC
66 TCTCTTTATTTCGAATTGTGTTGTTTCAAAACCCGAAAATTCGAAAAGAACCAATTCA-CCCCCC
*
457765 CTCTTGGTTCGTTA-ATAAGCTTTCAATTGGTATCAGAGCCAAACCTCCTTTCAACGGATTCACA
130 CTCTTGGTTCGTTATATAAGCTTTCAATTGGTATCAGAGCCAAACCTCCGTTCAACGGATTCACA
*
457829 CCCGGGAGAGACGATCAAATTCAAATCAAGAATGGAAGGTTCAATGATCAACAACTCAATCTTGA
195 CCCGGGAGAGACGATCAAATTCAAATCAAGAATGGAAGGTGCAATGATCAACAACTCAATCTTGA
457894 TGAACCAAGAAGAAATGTGTCTCATGGCATTAGAAAACAACTCGAATGCCATAGGACTCGAGGGA
260 TGAACCAAGAAGAAATGTGTCTCATGGCATTAGAAAACAACTCGAATGCCATAGGACTCGAGGGA
457959 CACTCAACCATGAGGCCTCCATACTTCAACGGTGACAACTTCTCATATT
325 CACTCAACCATGAGGCCTCCATACTTCAACGGTGACAACTTCTCATATT
458008 GGA
1 GGA
458011 AGACAAGGAT
Statistics
Matches: 364, Mismatches: 8, Indels: 10
0.95 0.02 0.03
Matches are distributed among these distances:
370 224 0.62
373 26 0.07
374 43 0.12
376 2 0.01
378 69 0.19
ACGTcount: A:0.30, C:0.23, G:0.18, T:0.28
Consensus pattern (373 bp):
GGACGTAGGTGCCGTGTTTGGACCGAACCTCTATAAATATCTTGTGTCAATTTTTCCTTCCCTAA
TCTCTTTATTTCGAATTGTGTTGTTTCAAAACCCGAAAATTCGAAAAGAACCAATTCACCCCCCC
TCTTGGTTCGTTATATAAGCTTTCAATTGGTATCAGAGCCAAACCTCCGTTCAACGGATTCACAC
CCGGGAGAGACGATCAAATTCAAATCAAGAATGGAAGGTGCAATGATCAACAACTCAATCTTGAT
GAACCAAGAAGAAATGTGTCTCATGGCATTAGAAAACAACTCGAATGCCATAGGACTCGAGGGAC
ACTCAACCATGAGGCCTCCATACTTCAACGGTGACAACTTCTCATATT
Found at i:461124 original size:15 final size:15
Alignment explanation
Indices: 461104--461134 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
461094 TAAAAATGTC
*
461104 CAAAATGAGGAAGCT
1 CAAAATGAAGAAGCT
461119 CAAAATGAAGAAGCT
1 CAAAATGAAGAAGCT
461134 C
1 C
461135 CAAACGAAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.48, C:0.16, G:0.23, T:0.13
Consensus pattern (15 bp):
CAAAATGAAGAAGCT
Found at i:463228 original size:20 final size:21
Alignment explanation
Indices: 463149--463227 Score: 72
Period size: 20 Copynumber: 3.7 Consensus size: 21
463139 AATGTCCAAA
*
463149 ATGTATCGATACATGTTTT-T
1 ATGTATCGATACATCTTTTCT
* *
463169 GTGTATCGATACATCTGGAAATTCT
1 ATGTATCGATACATCT----TTTCT
463194 ATGTATCGATACAT-TTTTCT
1 ATGTATCGATACATCTTTTCT
*
463214 TTGTATCGATACAT
1 ATGTATCGATACAT
463228 TGTATCGATA
Statistics
Matches: 48, Mismatches: 6, Indels: 10
0.75 0.09 0.16
Matches are distributed among these distances:
20 31 0.65
24 3 0.06
25 14 0.29
ACGTcount: A:0.27, C:0.14, G:0.15, T:0.44
Consensus pattern (21 bp):
ATGTATCGATACATCTTTTCT
Found at i:463232 original size:13 final size:13
Alignment explanation
Indices: 463214--463252 Score: 69
Period size: 13 Copynumber: 3.0 Consensus size: 13
463204 ACATTTTTCT
463214 TTGTATCGATACA
1 TTGTATCGATACA
463227 TTGTATCGATACA
1 TTGTATCGATACA
*
463240 CTGTATCGATACA
1 TTGTATCGATACA
463253 GGGTGATTAT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 25 1.00
ACGTcount: A:0.31, C:0.18, G:0.15, T:0.36
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:465060 original size:23 final size:23
Alignment explanation
Indices: 465030--465076 Score: 94
Period size: 23 Copynumber: 2.0 Consensus size: 23
465020 AATAAATTTT
465030 GATATGAATTACTTGATTAAGGG
1 GATATGAATTACTTGATTAAGGG
465053 GATATGAATTACTTGATTAAGGG
1 GATATGAATTACTTGATTAAGGG
465076 G
1 G
465077 GAGATTTTTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.34, C:0.04, G:0.28, T:0.34
Consensus pattern (23 bp):
GATATGAATTACTTGATTAAGGG
Found at i:465731 original size:20 final size:20
Alignment explanation
Indices: 465708--465780 Score: 101
Period size: 20 Copynumber: 3.6 Consensus size: 20
465698 ACAATTCAAA
465708 GTATCGATACATGTTGCAAT
1 GTATCGATACATGTTGCAAT
****
465728 GTATCGATACATGAAAAAGAT
1 GTATCGATACATGTTGCA-AT
465749 GTATCGATACATGTTGCAAT
1 GTATCGATACATGTTGCAAT
465769 GTATCGATACAT
1 GTATCGATACAT
465781 AAAAAAAGAT
Statistics
Matches: 44, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
20 28 0.64
21 16 0.36
ACGTcount: A:0.36, C:0.14, G:0.19, T:0.32
Consensus pattern (20 bp):
GTATCGATACATGTTGCAAT
Found at i:465759 original size:41 final size:42
Alignment explanation
Indices: 465708--465802 Score: 174
Period size: 41 Copynumber: 2.3 Consensus size: 42
465698 ACAATTCAAA
*
465708 GTATCGATACATGTTGCAATGTATCGATACAT-GAAAAAGAT
1 GTATCGATACATGTTGCAATGTATCGATACATAAAAAAAGAT
465749 GTATCGATACATGTTGCAATGTATCGATACATAAAAAAAGAT
1 GTATCGATACATGTTGCAATGTATCGATACATAAAAAAAGAT
465791 GTATCGATACAT
1 GTATCGATACAT
465803 TTCTTGGCAG
Statistics
Matches: 52, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
41 32 0.62
42 20 0.38
ACGTcount: A:0.40, C:0.13, G:0.18, T:0.29
Consensus pattern (42 bp):
GTATCGATACATGTTGCAATGTATCGATACATAAAAAAAGAT
Found at i:465859 original size:13 final size:13
Alignment explanation
Indices: 465841--465866 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
465831 TACAGCAAGT
465841 ATGTATCGATACA
1 ATGTATCGATACA
465854 ATGTATCGATACA
1 ATGTATCGATACA
465867 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:466856 original size:61 final size:61
Alignment explanation
Indices: 466642--466858 Score: 168
Period size: 61 Copynumber: 3.5 Consensus size: 61
466632 GTGTAGATTT
* * * * * * * *
466642 AAGGCCTGCAACATTGGACTTAAAGATGATATAAGAATGA-GAAGAGTGCTAATATGCTAATTC
1 AAGGCCAGCAATATTAGACTTAAAGACGA-A-AAGAATGATAAAG-GTGCCAAAATACTAATTC
* * * * ** * *
466705 AAGGTCAGCAACATTAGACTTAAGGATGTGAAGAATGATAAAGGTGCCAATATGCTAATTC
1 AAGGCCAGCAATATTAGACTTAAAGACGAAAAGAATGATAAAGGTGCCAAAATACTAATTC
* * * * * * *
466766 ACGGCCAACAATA-TCGAGCTTGAAGACGAAAAGAATGATTAAGGTGCCAAAATATTGATTC
1 AAGGCCAGCAATATTAGA-CTTAAAGACGAAAAGAATGATAAAGGTGCCAAAATACTAATTC
*
466827 AAGGCCAGCAATATTAGACTTAAAAACGAAAA
1 AAGGCCAGCAATATTAGACTTAAAGACGAAAA
466859 AGGTGCTAAT
Statistics
Matches: 123, Mismatches: 28, Indels: 8
0.77 0.18 0.05
Matches are distributed among these distances:
60 3 0.02
61 90 0.73
62 6 0.05
63 24 0.20
ACGTcount: A:0.42, C:0.14, G:0.21, T:0.23
Consensus pattern (61 bp):
AAGGCCAGCAATATTAGACTTAAAGACGAAAAGAATGATAAAGGTGCCAAAATACTAATTC
Found at i:467071 original size:32 final size:33
Alignment explanation
Indices: 466978--467104 Score: 116
Period size: 32 Copynumber: 3.8 Consensus size: 33
466968 ATGCTACCAT
* *
466978 CTTGTGTGGGCTTTTG-AGAGGGTTGCCACCGA
1 CTTGTGTGGGCTTTTGAAAAAGGTTGCCACCGA
* *
467010 CTTATCTGGGCTTTTGCATTGGAAAAGGTTGCCACCGA
1 CTTGTGTGGGCTTTTG-A----AAAAGGTTGCCACCGA
*
467048 CTTGTGTGGGC-TTTGAAAAAGGTTGCCA-CTA
1 CTTGTGTGGGCTTTTGAAAAAGGTTGCCACCGA
* *
467079 GCTTGTGTAGGCTTTTGAGAAAGGTT
1 -CTTGTGTGGGCTTTTGAAAAAGGTT
467105 TCTCCACTCG
Statistics
Matches: 78, Mismatches: 9, Indels: 15
0.76 0.09 0.15
Matches are distributed among these distances:
31 2 0.03
32 36 0.46
33 12 0.15
36 1 0.01
37 4 0.05
38 23 0.29
ACGTcount: A:0.19, C:0.17, G:0.31, T:0.33
Consensus pattern (33 bp):
CTTGTGTGGGCTTTTGAAAAAGGTTGCCACCGA
Found at i:467325 original size:28 final size:28
Alignment explanation
Indices: 467275--467348 Score: 89
Period size: 28 Copynumber: 2.7 Consensus size: 28
467265 TATATATAGC
*
467275 AGGTGCCACA-GA-TTGTGGGCTTCGAAA
1 AGGTGCCA-ATGACTTGTGGACTTCGAAA
* *
467302 AGGTGCCATTGACTTGTGGACTTCGAAG
1 AGGTGCCAATGACTTGTGGACTTCGAAA
*
467330 AGGTGCCAATGACTAGTGG
1 AGGTGCCAATGACTTGTGG
467349 GCTTTGAGAA
Statistics
Matches: 40, Mismatches: 5, Indels: 3
0.83 0.10 0.06
Matches are distributed among these distances:
27 10 0.25
28 30 0.75
ACGTcount: A:0.24, C:0.18, G:0.34, T:0.24
Consensus pattern (28 bp):
AGGTGCCAATGACTTGTGGACTTCGAAA
Found at i:467762 original size:43 final size:43
Alignment explanation
Indices: 467688--467772 Score: 100
Period size: 43 Copynumber: 2.0 Consensus size: 43
467678 GAGTGATAAA
* * *
467688 GGTGCCAATATGTTGATTCAATACCAGTGATATTAGG-CTTAAT
1 GGTGCCAACATGTTGATTCAAGACCACTGATATT-GGACTTAAT
* * *
467731 GGTGCCAACGTGTTGCTTCAAGGCCACTGATATTGGACTTAA
1 GGTGCCAACATGTTGATTCAAGACCACTGATATTGGACTTAA
467773 AGATGACAAA
Statistics
Matches: 35, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
42 2 0.06
43 33 0.94
ACGTcount: A:0.27, C:0.18, G:0.24, T:0.32
Consensus pattern (43 bp):
GGTGCCAACATGTTGATTCAAGACCACTGATATTGGACTTAAT
Found at i:467834 original size:52 final size:52
Alignment explanation
Indices: 467778--467880 Score: 127
Period size: 52 Copynumber: 2.0 Consensus size: 52
467768 CTTAAAGATG
*
467778 ACAAAGGCGCCAATATGCTAA-TCTAAGGCCAGCGATATTGGACATAAGAAAA
1 ACAAAGGCGCCAATATGCTAATTC-AAGGCCAGCGACATTGGACATAAGAAAA
* * * * * *
467830 ACAAAGGTGCTAATGTGCTGATTCAAGGCTAGCGACATTGGACTTAAGAAA
1 ACAAAGGCGCCAATATGCTAATTCAAGGCCAGCGACATTGGACATAAGAAA
467881 GAAACGGTTT
Statistics
Matches: 43, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
52 41 0.95
53 2 0.05
ACGTcount: A:0.39, C:0.17, G:0.23, T:0.20
Consensus pattern (52 bp):
ACAAAGGCGCCAATATGCTAATTCAAGGCCAGCGACATTGGACATAAGAAAA
Found at i:468754 original size:52 final size:51
Alignment explanation
Indices: 468665--468859 Score: 210
Period size: 52 Copynumber: 3.8 Consensus size: 51
468655 GATAAAAATA
* *
468665 CCAATATGCTGATTCAAGGCCAGTGATATTAGGCTTAAAGGTGACAAAGGTG
1 CCAATATGCTGATTCAAGGCCAGTGACATTAGACTT-AAGGTGACAAAGGTG
** * * *
468717 CCAACGTGCTGCTTCAAGGCTAGGGACATTAGACTTAAGGATGACAAAGGTG
1 CCAATATGCTGATTCAAGGCCAGTGACATTAGACTTAAGG-TGACAAAGGTG
* * * * ** * *
468769 CCTATATGCTGATTCAAGGCCAATGATATTGGACTTAAGAAAGAAAAAAGTG
1 CCAATATGCTGATTCAAGGCCAGTGACATTAGACTTAAG-GTGACAAAGGTG
* *
468821 CCAATATGCTGATTCAAGGCTAGCGACATTAGACTTAAG
1 CCAATATGCTGATTCAAGGCCAGTGACATTAGACTTAAG
468860 AAAGAAATGG
Statistics
Matches: 115, Mismatches: 26, Indels: 4
0.79 0.18 0.03
Matches are distributed among these distances:
51 4 0.03
52 111 0.97
ACGTcount: A:0.34, C:0.17, G:0.25, T:0.24
Consensus pattern (51 bp):
CCAATATGCTGATTCAAGGCCAGTGACATTAGACTTAAGGTGACAAAGGTG
Found at i:468849 original size:104 final size:104
Alignment explanation
Indices: 468668--468859 Score: 271
Period size: 104 Copynumber: 1.8 Consensus size: 104
468658 AAAAATACCA
* ** * * * *
468668 ATATGCTGATTCAAGGCCAGTGATATTAGGCTTAAAGGTGACAAAGGTGCCAACGTGCTGCTTCA
1 ATATGCTGATTCAAGGCCAATGATATTAGGCTTAAAGAAGAAAAAAGTGCCAACATGCTGATTCA
*
468733 AGGCTAGGGACATTAGACTTAAGGATGACAAAGGTGCCT
66 AGGCTAGCGACATTAGACTTAAGGATGACAAAGGTGCCT
*
468772 ATATGCTGATTCAAGGCCAATGATATT-GGACTT-AAGAAAGAAAAAAGTGCCAATATGCTGATT
1 ATATGCTGATTCAAGGCCAATGATATTAGG-CTTAAAG-AAGAAAAAAGTGCCAACATGCTGATT
468835 CAAGGCTAGCGACATTAGACTTAAG
64 CAAGGCTAGCGACATTAGACTTAAG
468860 AAAGAAATGG
Statistics
Matches: 77, Mismatches: 9, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
103 5 0.06
104 72 0.94
ACGTcount: A:0.34, C:0.16, G:0.25, T:0.24
Consensus pattern (104 bp):
ATATGCTGATTCAAGGCCAATGATATTAGGCTTAAAGAAGAAAAAAGTGCCAACATGCTGATTCA
AGGCTAGCGACATTAGACTTAAGGATGACAAAGGTGCCT
Found at i:468895 original size:60 final size:59
Alignment explanation
Indices: 468816--468927 Score: 152
Period size: 60 Copynumber: 1.9 Consensus size: 59
468806 AGAAAGAAAA
*
468816 AAGTGCCAATATGCTGATTCAAGGCTAGCGACATTAGACTTAAGAAAGAAATGGTTTGAT
1 AAGTGCCAATATGCTGATTCAAGGCTAACGACATTAGACTTAA-AAAGAAATGGTTTGAT
* * * * * *
468876 AAGTGCCTATGTGTTGATTCAAGGCTAACGACATTGGGCTTAAAAGGAAATG
1 AAGTGCCAATATGCTGATTCAAGGCTAACGACATTAGACTTAAAAAGAAATG
468928 CTACCATTGT
Statistics
Matches: 45, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
59 8 0.18
60 37 0.82
ACGTcount: A:0.35, C:0.13, G:0.25, T:0.27
Consensus pattern (59 bp):
AAGTGCCAATATGCTGATTCAAGGCTAACGACATTAGACTTAAAAAGAAATGGTTTGAT
Found at i:469635 original size:981 final size:982
Alignment explanation
Indices: 466806--471042 Score: 5313
Period size: 981 Copynumber: 4.3 Consensus size: 982
466796 AAGAATGATT
* ** *** * * *
466806 AAGGTGCCAAAATATTGATTCAAGGCCAGCAATATTAGACTTAA-AAACGAAAAAGGTGCTAATG
1 AAGGTGCCAATATGCTGATTCAAGGCCAATGATATTGGACTTAAGAAA-GAAAAAAGTGCCAATG
* * *
466870 TACTGATTCAAGGCTAGCGACATTGGACTTAAGAAATAAATGGTTTGACAAATGCCTATGTGTTG
65 TGCTGATTCAAGGCTAGCGACATTGGACTTAAGAAAGAAATGGTTTGACAAGTGCCTATGTGTTG
*
466935 ATTCAAGGCCAACGACCTTGGGCTTAGAAGGAGATGCTACCATCTTGTGTGGGCTTTTGAGAGGG
130 ATTCAAGGCCAACGACATTGGGCTTAGAAGGAGATGCTACCATCTTGTGTGGGCTTTTGAGAGGG
* * * *
467000 TTGCCACCGACTTATCTGGGCTTTTGCATTGGAA-AAGGTTGCCACCGACTTGTGTGGGCTTTGA
195 TTGCCACCGACTTGTGTGGGCTTTTGCATT-GAAGAAGGTTACCACCGGCTTGTGTGGGCTTTG-
* * * * *
467064 AAAAGGTTGCCACTAGCTTGTGTAGGCTTTTGAGAAAGGTTTCTCCACTCGGATATTAAACTTCT
258 AAGAGGTTGCCACCAGCTTGTGT-GGCTTTTAAGAAAGGTTTCTCCACTAGGATATTAAACTTCC
* * * ** **
467129 TGAGGATGACATACTTGTCATGTGTGTCTGACTACGAACTTGGTGC-CACATATATTGGCAGGCT
322 TGGGGATGACATGCTTGTCATGCGTGTCTGACTATAAACTTGGT-CTCACCGATATTGGCAGGCT
* * ** * * *
467193 TAAAAATATTCGTTGCCACTAGCTTGTGTGGGCTTTGGTGTCTAGCTACTGGTAGATGAACTCTA
386 TAAAAATATTGGGTGCCACTAGCTCCTGTGGGCTTTGGTGTCTAGCTCCTTGTAGACGAACTCTA
* * *
467258 GTGCCATTATATATAGCAGGTGCCAC-AGATTGTGGGCTTCGAAAAGGTGCCATTGACTTGTGGA
451 GTGCCATTATATATAGCAAGTGCCACTA-ATTGTGGGCTTCGAAAAGGTGCCACTGACTTGTAGA
* * *
467322 CTTCGAAGAGGTGCCA-ATGACTAGTGGGCTTTGAGAAGGGATTCGTGTTGACAAATATTTCTTG
515 CTTCGTAGAGGTGCCATATAACTAGTGGGCTTTGAGAAGGGATTCGTGTTGACAAACATTTCTTG
** *
467386 ACGAAGTTTCTAACAAACGTTCTCGACAAAAGTTCTAAGG-CTTGACCTCCTTAGATAGGTGTTG
580 ATAAAGTTTCTAACAAACGTTCTCGACAAAAGTTCTAAGGCCTT-ACCTCCTTAGACAGGTGTTG
* * * ** * ** *
467450 TGGAAGGGTATGACTTCCTAGGGATTAGTGAGGGTATGATTAGTGTTTGGCGATGTGATAATGTG
644 TGGAAGGGTATGACTTCTTAAGGATTGGTGAGGGTATGACCAGTGTTTGGCAATGTTCTAGTGTG
* * * * **
467515 GAGATTCAAGGCCTACAACATTAGACTTAAAGATGATATAAGAATGAGAAGAGTGCTAATACGCT
709 CAGATTCAAGGCCTACAACATTAGACTTAAAGATGATATAAGAATAAGAAAAGTGCCAATATTCT
*
467580 AATTCAAGGTCAGCGA-TATTGAACTTAAGGATGCAAAGAATGATAAAGGTGCCAATATGATGAT
774 AATTCAAGGTCAGCGACT-TTGGACTTAAGGATGCAAAGAATGATAAAGGTGCCAATATGATGAT
* * * * * * * * *
467644 TCACAGCCAACAATATCAGGCTGGAAGATAAAAAGAGTGATAAAGGTGCCAATATGTTGATTCAA
838 TTACGGCCAACAATATC-GACTTGAAGATGAGAAGAATGATAAAGGTACCAATATGCTGATTCAA
** * * ** *
467709 TACCAGTGATATTAGGCTT-AA--T------GGTGCCAACGTGTTGCTTCAAGGCCACTGATATT
902 GGCCAATGATATTAGGCTTAAAGGTGACAAAGGTGCCAACGTGCTGCTTCAAGGCCAGGGACATT
*
467765 GGACTTAAAGATGACA
967 GGACTTAAGGATGACA
* * ** * * *
467781 AAGGCGCCAATATGCT-AATCTAAGGCCAGCGATATTGGACATAAGAAA-AACAAAGGTGCTAAT
1 AAGGTGCCAATATGCTGATTC-AAGGCCAATGATATTGGACTTAAGAAAGAA-AAAAGTGCCAAT
* *
467844 GTGCTGATTCAAGGCTAGCGACATTGGACTTAAGAAAGAAACGGTTTGATAAGTGCCTATGTGTT
64 GTGCTGATTCAAGGCTAGCGACATTGGACTTAAGAAAGAAATGGTTTGACAAGTGCCTATGTGTT
* * ** * * *
467909 GATACAAGGCTATTGACATTGGGCTTTGAAGGAGATGCTACCATCTTATGTGGGCTTTTGAGAAG
129 GATTCAAGGCCAACGACATTGGGCTTAGAAGGAGATGCTACCATCTTGTGTGGGCTTTTGAGAGG
* * * *
467974 GTTGCCACTGACTTGTGTGGGCTTTTGCACTAAAGAAGGTTACCACCGGCTTGGGTGGGCTTTGA
194 GTTGCCACCGACTTGTGTGGGCTTTTGCATTGAAGAAGGTTACCACCGGCTTGTGTGGGCTTTGA
* * * *
468039 AGAAGTTGCCACCAGCTTGAGCAGGCTTTTAAGAAAGGTTTCGCCACTAAGGATATTAAACTTCC
259 AGAGGTTGCCACCAGCTTGTG-TGGCTTTTAAGAAAGGTTTCTCCACT-AGGATATTAAACTTCC
* * *
468104 TGGGGATGACATGCATGTCATGCGTGTTTGACTATAAACTTAGTCTCACCGATATTGGCAGGCTT
322 TGGGGATGACATGCTTGTCATGCGTGTCTGACTATAAACTTGGTCTCACCGATATTGGCAGGCTT
* *
468169 AAAAATTTTGGGTGCCACTAGCTCCTGTGGGCTTTGGTGTCTAGCTCCTTGTAGACAAACTCTAG
387 AAAAATATTGGGTGCCACTAGCTCCTGTGGGCTTTGGTGTCTAGCTCCTTGTAGACGAACTCTAG
* * * * * * * *
468234 TGCCATTAT-TACAGCAGGTACCACTAATTGTGGGCTTCGAAAAAGTACCACTAACTTGTGGAAT
452 TGCCATTATATATAGCAAGTGCCACTAATTGTGGGCTTCGAAAAGGTGCCACTGACTTGTAGACT
* * *
468298 TCGCAAAGGTGCCAT-TAACTAGTGAGCTTTGAGAAGGGATTCGTGTTGACAAACATTTCTTGAT
517 TCGTAGAGGTGCCATATAACTAGTGGGCTTTGAGAAGGGATTCGTGTTGACAAACATTTCTTGAT
* * * *
468362 AAAATTTCTGACAAATGTTCTCGACAAAAGTTCTAAGGCCTTACCTACTTAGACAGGTGTTGTGG
582 AAAGTTTCTAACAAACGTTCTCGACAAAAGTTCTAAGGCCTTACCTCCTTAGACAGGTGTTGTGG
*
468427 AAGGGTATGACTTCTTAAGGATTGGTGAGGGTATGACCAATGTTTGGCAATGTTCTAGTGTGCAG
647 AAGGGTATGACTTCTTAAGGATTGGTGAGGGTATGACCAGTGTTTGGCAATGTTCTAGTGTGCAG
* * * * *
468492 ATTCAAGGCCCACATCGTTAAACTTAAAGATGATATAAGAATAAGAAAAGTTCCAATATTCTAAT
712 ATTCAAGGCCTACAACATTAGACTTAAAGATGATATAAGAATAAGAAAAGTGCCAATATTCTAAT
* * * * *
468557 TCAAGGTTC--TGATTTTGGACTTAAGGATGCGAAGAATGATTAAGGTGCCAATATGTTGATTTA
777 TCAAGG-TCAGCGACTTTGGACTTAAGGATGCAAAGAATGATAAAGGTGCCAATATGATGATTTA
* * **
468620 CGGCAAACAATATC-ATGCTTGAAGATGTGAAGAATGATAAAAATACCAATATGCTGATTCAAGG
841 CGGCCAACAATATCGA--CTTGAAGATGAGAAGAATGATAAAGGTACCAATATGCTGATTCAAGG
* * *
468684 CCAGTGATATTAGGCTTAAAGGTGACAAAGGTGCCAACGTGCTGCTTCAAGGCTAGGGACATTAG
904 CCAATGATATTAGGCTTAAAGGTGACAAAGGTGCCAACGTGCTGCTTCAAGGCCAGGGACATTGG
468749 ACTTAAGGATGACA
969 ACTTAAGGATGACA
* *
468763 AAGGTGCCTATATGCTGATTCAAGGCCAATGATATTGGACTTAAGAAAGAAAAAAGTGCCAATAT
1 AAGGTGCCAATATGCTGATTCAAGGCCAATGATATTGGACTTAAGAAAGAAAAAAGTGCCAATGT
* *
468828 GCTGATTCAAGGCTAGCGACATTAGACTTAAGAAAGAAATGGTTTGATAAGTGCCTATGTGTTGA
66 GCTGATTCAAGGCTAGCGACATTGGACTTAAGAAAGAAATGGTTTGACAAGTGCCTATGTGTTGA
* * *
468893 TTCAAGGCTAACGACATTGGGCTTAAAAGGAAATGCTACCAT-TGTGTGTGGGCTTTTGAGAGGG
131 TTCAAGGCCAACGACATTGGGCTTAGAAGGAGATGCTACCATCT-TGTGTGGGCTTTTGAGAGGG
* * * * *
468957 TTGCCATCGACTTGTGTGGGCTTTTACATTGGAA-AAGGTTACCACTGGCTTGTGAGGGCTTTCA
195 TTGCCACCGACTTGTGTGGGCTTTTGCATT-GAAGAAGGTTACCACCGGCTTGTGTGGGCTTTGA
*
469021 AGAGGTTGCCACCAGCTTGTGTGGACTTTTAAGAAAGGTTTCTCCACTGGGGATATT-AACTTCC
259 AGAGGTTGCCACCAGCTTGTGTGG-CTTTTAAGAAAGGTTTCTCCACT-AGGATATTAAACTTCC
* *
469085 TGGGGATGACATGCTTGTCATGCGTGTTTGACTATAAACTTGGTCTCACCGATATTGGCGGGCTT
322 TGGGGATGACATGCTTGTCATGCGTGTCTGACTATAAACTTGGTCTCACCGATATTGGCAGGCTT
* * * *
469150 AAAAATATTGGGTGCCATTAGCTCCTGTAGGTTTTGGTGTCTATCTCCTTGTAGACGAACTCTAG
387 AAAAATATTGGGTGCCACTAGCTCCTGTGGGCTTTGGTGTCTAGCTCCTTGTAGACGAACTCTAG
* *
469215 TGCCATTAT-TATAGCAAGTGCCACTAATTGTGGCCTTCGAAAAGGTGCCACTGATTTGTAGACT
452 TGCCATTATATATAGCAAGTGCCACTAATTGTGGGCTTCGAAAAGGTGCCACTGACTTGTAGACT
*
469279 TCGTTGAGGTGCCATA-AACTAGTGGGCTTTGAGAAGGGATTCGTGTTGACAAACATTTCTTGAT
517 TCGTAGAGGTGCCATATAACTAGTGGGCTTTGAGAAGGGATTCGTGTTGACAAACATTTCTTGAT
* * * *
469343 AAAGTTTCTAACAAATGTTCTTGACAAAAGTTCTAAGGCCTTACCTTCTTAGACAGGTGTTCTGG
582 AAAGTTTCTAACAAACGTTCTCGACAAAAGTTCTAAGGCCTTACCTCCTTAGACAGGTGTTGTGG
469408 AAGGGTATGACTTCTTAAGGATTGGTGAGGGTATGACCAGTGTTTGGCAATGTTCTAGTGTGCAG
647 AAGGGTATGACTTCTTAAGGATTGGTGAGGGTATGACCAGTGTTTGGCAATGTTCTAGTGTGCAG
* * *
469473 ATTCAAGGCTTACATCGTTAGACTTAAAGATGATATAAGAATAAGAAAAGTGCCAATATTCTAAT
712 ATTCAAGGCCTACAACATTAGACTTAAAGATGATATAAGAATAAGAAAAGTGCCAATATTCTAAT
*** * * * *
469538 TCAAGGT-TTTGACTTTGGACTTAAGGATACAAAGAATGGTAGAGGTACCAATATGATGATTTAC
777 TCAAGGTCAGCGACTTTGGACTTAAGGATGCAAAGAATGATAAAGGTGCCAATATGATGATTTAC
** * * *
469602 GGTGAACGATATCGCACTTGAAGATGAGAAGAATGATAAAGGTACTAATATGCTGATTCATGGCC
842 GGCCAACAATATCG-ACTTGAAGATGAGAAGAATGATAAAGGTACCAATATGCTGATTCAAGGCC
* * *
469667 AATGATCTTAGGCTTAAAGGTGACAAAGGTGCCAAGGTGCTGCTTCAAGGGCAGGGACATTGGAC
906 AATGATATTAGGCTTAAAGGTGACAAAGGTGCCAACGTGCTGCTTCAAGGCCAGGGACATTGGAC
469732 TTAAGGATGACA
971 TTAAGGATGACA
* * * *
469744 AAAGTGCCAATATGCTGATTCAAGGCCAATGATATTGGACTGAAGAAAGAAAAAAGTGTCAATAT
1 AAGGTGCCAATATGCTGATTCAAGGCCAATGATATTGGACTTAAGAAAGAAAAAAGTGCCAATGT
* * * * * *
469809 GTTAATTCAAGGCTAGCGATATTGGATTTAAGAAAGAAGTGGTTTGGCAAGTGCCTATGTGTTGA
66 GCTGATTCAAGGCTAGCGACATTGGACTTAAGAAAGAAATGGTTTGACAAGTGCCTATGTGTTGA
* *
469874 TTCAAGGCCAACGACATTGGGCTTAGAAAGAGATGCTACCATCTTGTATGGGCTTTTGAGAGGGT
131 TTCAAGGCCAACGACATTGGGCTTAGAAGGAGATGCTACCATCTTGTGTGGGCTTTTGAGAGGGT
* * * *
469939 TGCCACCGACTTGTGTGGACTTTTGCATTGAAGAAGGTTGCCACCGGCTTATGTGGGGTTTGAAG
196 TGCCACCGACTTGTGTGGGCTTTTGCATTGAAGAAGGTTACCACCGGCTTGTGTGGGCTTTGAAG
* * * *
470004 AACGTTGCCACCAGTTTGTGTGGCCTTTT-GGAAAGGTTTCTCCACTAGG-TATTAAACTTCCTA
261 -AGGTTGCCACCAGCTTGTGTGG-CTTTTAAGAAAGGTTTCTCCACTAGGATATTAAACTTCCTG
* * * *
470067 GGGATGACATGCTTGTTATGCGTGTCT-AGCTATGAGCTTGGTCTCACCGATATTGGCAAGCTTA
324 GGGATGACATGCTTGTCATGCGTGTCTGA-CTATAAACTTGGTCTCACCGATATTGGCAGGCTTA
* * *
470131 AAAATATTGGGTGCCACTACCTCATGTGGGCTTTGGTGTCCAGCTCCTTGTAGACGAACTCTAGT
388 AAAATATTGGGTGCCACTAGCTCCTGTGGGCTTTGGTGTCTAGCTCCTTGTAGACGAACTCTAGT
* * * * *
470196 GCCATCATATATAGC-AGATGCCACTGATTATGGTCTTCAAAAAGGTGCCACTGACTTGTAGACT
453 GCCATTATATATAGCAAG-TGCCACTAATTGTGGGCTTCGAAAAGGTGCCACTGACTTGTAGACT
470260 TCGTAGAGGTGCCACTGACTTATGGACTTCGTAGAGGTGCCACTAAGTAATGGCTTTGAGAAGGG
517 TCGTAGAGGTGCCA-T-A--TA---A---C-T--A---G----T--G----GGCTTTGAGAAGGG
* * * ** * *
470325 ATTCATGTTGATAAACATTTCTTGATGAAGTTTCTGGCTAACATTCTCGACAAAA-TTCTAAGGC
556 ATTCGTGTTGACAAACATTTCTTGATAAAGTTTCTAACAAACGTTCTCGACAAAAGTTCTAAGGC
* *
470389 CTTACCTCCTCAGACAGGTGTTGTGGAAGGGTATGACTTCTT-AGGTATTGGTGAGGGTATGATC
621 CTTACCTCCTTAGACAGGTGTTGTGGAAGGGTATGACTTCTTAAGG-ATTGGTGAGGGTATGACC
* * * *
470453 AGTGTTTGGCGATGTTCTAGTGTACAGATTCAAAGCCTACAACATTAGACTTAAAGATAATATAA
685 AGTGTTTGGCAATGTTCTAGTGTGCAGATTCAAGGCCTACAACATTAGACTTAAAGATGATATAA
* **
470518 GAATGAGAAAAGTGCCAATATTCTAATTCAAGGTCAGCGACTTTGGACTTAAGGATGTGAAGAAT
750 GAATAAGAAAAGTGCCAATATTCTAATTCAAGGTCAGCGACTTTGGACTTAAGGATGCAAAGAAT
* * * *
470583 GATAAAGGTGCCAATATGCTAATTTACGGCCAACAATATCAAGCTTGAGGATGAGAAGAATGATA
815 GATAAAGGTGCCAATATGATGATTTACGGCCAACAATATCGA-CTTGAAGATGAGAAGAATGATA
* * * *
470648 AAGGTACCAATATGTTGATTCATGGCCAATGATCTTGGGCTTAAAGGTGACAAAGGTGCCAACGT
879 AAGGTACCAATATGCTGATTCAAGGCCAATGATATTAGGCTTAAAGGTGACAAAGGTGCCAACGT
* **
470713 GCTGTTTCAAGGCCAATGACATTGGACTTAAGGATGACA
944 GCTGCTTCAAGGCCAGGGACATTGGACTTAAGGATGACA
* * * *
470752 AAGGTGCCAATATACTGATTCAAAGCCAATTATATTAGACTTAAGAAAG-AAAAAGATGCCAATG
1 AAGGTGCCAATATGCTGATTCAAGGCCAATGATATTGGACTTAAGAAAGAAAAAAG-TGCCAATG
* *
470816 TGCTGATTCAAGGCTAGCGACATTGGACTTAAGAAAGAAATGATTTGACAAGTGCCTATCTGTTG
65 TGCTGATTCAAGGCTAGCGACATTGGACTTAAGAAAGAAATGGTTTGACAAGTGCCTATGTGTTG
* * * *
470881 ATTCAAGGCCAACGACATTGGGCTTAGAAGGGGATGCTACCATGTTGTGTAGGCTTTTGTGAGGG
130 ATTCAAGGCCAACGACATTGGGCTTAGAAGGAGATGCTACCATCTTGTGTGGGCTTTTGAGAGGG
** * * * *
470946 TTGCCACTAACTTTTTTGGGC--TT---TTGAAG-AGGTTGCCACCAGCTTGTGTGGGCTTTGAA
195 TTGCCACCGACTTGTGTGGGCTTTTGCATTGAAGAAGGTTACCACCGGCTTGTGTGGGCTTTGAA
* *
471005 GAAGGTTGCCACCGGCTT-TGTGGGCTTTGAA-AAAGGTT
260 G-AGGTTGCCACCAGCTTGTGT-GGCTTTTAAGAAAGGTT
471043 GCCACCAGCT
Statistics
Matches: 2844, Mismatches: 345, Indels: 120
0.86 0.10 0.04
Matches are distributed among these distances:
973 111 0.04
974 325 0.11
975 352 0.12
976 4 0.00
979 5 0.00
980 137 0.05
981 911 0.32
982 336 0.12
983 9 0.00
986 1 0.00
989 1 0.00
992 1 0.00
993 1 0.00
995 1 0.00
998 1 0.00
1001 14 0.00
1002 45 0.02
1003 6 0.00
1004 1 0.00
1006 5 0.00
1007 163 0.06
1008 414 0.15
ACGTcount: A:0.29, C:0.16, G:0.25, T:0.29
Consensus pattern (982 bp):
AAGGTGCCAATATGCTGATTCAAGGCCAATGATATTGGACTTAAGAAAGAAAAAAGTGCCAATGT
GCTGATTCAAGGCTAGCGACATTGGACTTAAGAAAGAAATGGTTTGACAAGTGCCTATGTGTTGA
TTCAAGGCCAACGACATTGGGCTTAGAAGGAGATGCTACCATCTTGTGTGGGCTTTTGAGAGGGT
TGCCACCGACTTGTGTGGGCTTTTGCATTGAAGAAGGTTACCACCGGCTTGTGTGGGCTTTGAAG
AGGTTGCCACCAGCTTGTGTGGCTTTTAAGAAAGGTTTCTCCACTAGGATATTAAACTTCCTGGG
GATGACATGCTTGTCATGCGTGTCTGACTATAAACTTGGTCTCACCGATATTGGCAGGCTTAAAA
ATATTGGGTGCCACTAGCTCCTGTGGGCTTTGGTGTCTAGCTCCTTGTAGACGAACTCTAGTGCC
ATTATATATAGCAAGTGCCACTAATTGTGGGCTTCGAAAAGGTGCCACTGACTTGTAGACTTCGT
AGAGGTGCCATATAACTAGTGGGCTTTGAGAAGGGATTCGTGTTGACAAACATTTCTTGATAAAG
TTTCTAACAAACGTTCTCGACAAAAGTTCTAAGGCCTTACCTCCTTAGACAGGTGTTGTGGAAGG
GTATGACTTCTTAAGGATTGGTGAGGGTATGACCAGTGTTTGGCAATGTTCTAGTGTGCAGATTC
AAGGCCTACAACATTAGACTTAAAGATGATATAAGAATAAGAAAAGTGCCAATATTCTAATTCAA
GGTCAGCGACTTTGGACTTAAGGATGCAAAGAATGATAAAGGTGCCAATATGATGATTTACGGCC
AACAATATCGACTTGAAGATGAGAAGAATGATAAAGGTACCAATATGCTGATTCAAGGCCAATGA
TATTAGGCTTAAAGGTGACAAAGGTGCCAACGTGCTGCTTCAAGGCCAGGGACATTGGACTTAAG
GATGACA
Found at i:469781 original size:52 final size:52
Alignment explanation
Indices: 469648--469840 Score: 165
Period size: 52 Copynumber: 3.7 Consensus size: 52
469638 TAAAGGTACT
* * *
469648 AATATGCTGATTCATGGCCAATGATCTTAGG-CTTAAAGG-TGACAAAGGTGCC
1 AATATGCTGATTCAAGGCCAATGATATT-GGACTT-AAGGATGACAAAAGTGCC
** * * ** *
469700 AAGGTGCTGCTTCAAGGGCAGGGACATTGGACTTAAGGATGACAAAAGTGCC
1 AATATGCTGATTCAAGGCCAATGATATTGGACTTAAGGATGACAAAAGTGCC
* * * * *
469752 AATATGCTGATTCAAGGCCAATGATATTGGACTGAAGAAAGAAAAAAGTGTC
1 AATATGCTGATTCAAGGCCAATGATATTGGACTTAAGGATGACAAAAGTGCC
* * * ** *
469804 AATATGTTAATTCAAGGCTAGCGATATTGGATTTAAG
1 AATATGCTGATTCAAGGCCAATGATATTGGACTTAAG
469841 AAAGAAGTGG
Statistics
Matches: 110, Mismatches: 29, Indels: 4
0.77 0.20 0.03
Matches are distributed among these distances:
51 6 0.05
52 104 0.95
ACGTcount: A:0.35, C:0.14, G:0.26, T:0.25
Consensus pattern (52 bp):
AATATGCTGATTCAAGGCCAATGATATTGGACTTAAGGATGACAAAAGTGCC
Found at i:470026 original size:32 final size:32
Alignment explanation
Indices: 469966--470026 Score: 86
Period size: 32 Copynumber: 1.9 Consensus size: 32
469956 GACTTTTGCA
* *
469966 TTGAAGAAGGTTGCCACCGGCTTATGTGGGGT
1 TTGAAGAACGTTGCCACCAGCTTATGTGGGGT
* *
469998 TTGAAGAACGTTGCCACCAGTTTGTGTGG
1 TTGAAGAACGTTGCCACCAGCTTATGTGG
470027 CCTTTTGGAA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
32 25 1.00
ACGTcount: A:0.20, C:0.16, G:0.34, T:0.30
Consensus pattern (32 bp):
TTGAAGAACGTTGCCACCAGCTTATGTGGGGT
Found at i:470270 original size:28 final size:28
Alignment explanation
Indices: 470238--470303 Score: 114
Period size: 28 Copynumber: 2.4 Consensus size: 28
470228 GTCTTCAAAA
*
470238 AGGTGCCACTGACTTGTAGACTTCGTAG
1 AGGTGCCACTGACTTATAGACTTCGTAG
*
470266 AGGTGCCACTGACTTATGGACTTCGTAG
1 AGGTGCCACTGACTTATAGACTTCGTAG
470294 AGGTGCCACT
1 AGGTGCCACT
470304 AAGTAATGGC
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
28 36 1.00
ACGTcount: A:0.21, C:0.23, G:0.29, T:0.27
Consensus pattern (28 bp):
AGGTGCCACTGACTTATAGACTTCGTAG
Done.