Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold172
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 1975206
ACGTcount: A:0.26, C:0.15, G:0.15, T:0.26
Warning! 344189 characters in sequence are not A, C, G, or T
File 5 of 11
Found at i:614322 original size:122 final size:115
Alignment explanation
Indices: 614175--614533 Score: 425
Period size: 122 Copynumber: 3.0 Consensus size: 115
614165 GAGAAAAGGA
*
614175 AAAGGCGTCCTGCTCTTTGAGGACTAAAAAGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAG
1 AAAGGCATCCTGCTCTTTGAGGACTAAAAAGTGCCACCAACTCGTGTGGGCTTT-AAAAGAAAAG
** *
614240 GCATCCTGCTCTTTGAGGACTGGAAGGTGCCACCAATTTGTGTGGGCTTTG
65 GCATCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTG
* * * * * * * *
614291 CAAAGAGAAAGCTTCTTGCTCTTTGAGGACTAGAAGGTGCCACTAACTCGAGTGGTCTTTACAAG
1 --AA-AG---GCATCCTGCTCTTTGAGGACTAAAAAGTGCCACCAACTCGTGTGGGCTTTA-AAA
*
614356 GAGAAA-GCATCCTGCTCTTTGAGGACTGGAAAATACCACCAACTTGTGTGGGCTTTG
59 GA-AAAGGCATCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTG
* *
614413 AAAGGCATCCTGCTCTTTGAGGACTGGAAAA-TGCCACCAACTTGTGTGGGCTTTAAAAGGAAAA
1 AAAGGCATCCTGCTCTTTGAGGACT-AAAAAGTGCCACCAACTCGTGTGGGCTTTAAAA-GAAAA
* ** * *
614477 GGCGTCCTGCTCTTTGAGGACCAGAAAATGCTACCAACTTGTGTGGGCTTTA
64 GGCATCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTG
614529 AAAGG
1 AAAGG
614534 AAAAGGCATC
Statistics
Matches: 204, Mismatches: 28, Indels: 20
0.81 0.11 0.08
Matches are distributed among these distances:
115 5 0.02
116 91 0.45
117 2 0.01
118 2 0.01
119 4 0.02
120 2 0.01
121 1 0.00
122 94 0.46
123 3 0.01
ACGTcount: A:0.27, C:0.20, G:0.27, T:0.26
Consensus pattern (115 bp):
AAAGGCATCCTGCTCTTTGAGGACTAAAAAGTGCCACCAACTCGTGTGGGCTTTAAAAGAAAAGG
CATCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTG
Found at i:614441 original size:55 final size:55
Alignment explanation
Indices: 614358--614533 Score: 237
Period size: 55 Copynumber: 3.1 Consensus size: 55
614348 TTTACAAGGA
*
614358 GAAA-GCATCCTGCTCTTTGAGGACTGGAAAATACCACCAACTTGTGTGGGCTTT
1 GAAAGGCATCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTT
614412 GAAAGGCATCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTT
1 GAAAGGCATCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTT
* ** *
614467 AAAAGGAAAAGGCGTCCTGCTCTTTGAGGACCAGAAAATGCTACCAACTTGTGTGGGCTTT
1 -----G-AAAGGCATCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTT
*
614528 AAAAGG
1 GAAAGG
614534 AAAAGGCATC
Statistics
Matches: 109, Mismatches: 6, Indels: 13
0.85 0.05 0.10
Matches are distributed among these distances:
54 4 0.04
55 54 0.50
60 1 0.01
61 50 0.46
ACGTcount: A:0.28, C:0.20, G:0.26, T:0.26
Consensus pattern (55 bp):
GAAAGGCATCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTT
Found at i:614665 original size:55 final size:55
Alignment explanation
Indices: 614578--614766 Score: 254
Period size: 55 Copynumber: 3.4 Consensus size: 55
614568 AAAGGAGAGA
* * ** **
614578 GCGTCCTGCTTTTTGAGGATTGGGAA-ATGCCACCAACTTGTGTGGGCTTCAAAAG
1 GCGTCCTGCTCTTTGAGGACT-AAAAGATGCCACCAACTTGTGTGGGCTTTGAAAG
* *
614633 GCGTCCTGCTCTTTAAGGACTAAAATATGCCACCAACTTGTGTGGGCTTTGAAAG
1 GCGTCCTGCTCTTTGAGGACTAAAAGATGCCACCAACTTGTGTGGGCTTTGAAAG
* * * *
614688 GCATCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGAGCTTTGAAAG
1 GCGTCCTGCTCTTTGAGGACTAAAAGATGCCACCAACTTGTGTGGGCTTTGAAAG
614743 GCGTCCTGCTCTTTGAGGACTAAA
1 GCGTCCTGCTCTTTGAGGACTAAA
614767 GGGTGAAATG
Statistics
Matches: 118, Mismatches: 15, Indels: 2
0.87 0.11 0.01
Matches are distributed among these distances:
54 2 0.02
55 116 0.98
ACGTcount: A:0.23, C:0.22, G:0.26, T:0.29
Consensus pattern (55 bp):
GCGTCCTGCTCTTTGAGGACTAAAAGATGCCACCAACTTGTGTGGGCTTTGAAAG
Found at i:615851 original size:21 final size:21
Alignment explanation
Indices: 615826--615875 Score: 68
Period size: 20 Copynumber: 2.5 Consensus size: 21
615816 CTTAAGCAGG
615826 TTCTTTTCTTTTTTCTCTTTT
1 TTCTTTTCTTTTTTCTCTTTT
* *
615847 TTCTTTT-TTTTTTTTGTTTT
1 TTCTTTTCTTTTTTCTCTTTT
615867 TT-TTTTCTT
1 TTCTTTTCTT
615876 AAATGTGGGA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
19 4 0.15
20 15 0.58
21 7 0.27
ACGTcount: A:0.00, C:0.12, G:0.02, T:0.86
Consensus pattern (21 bp):
TTCTTTTCTTTTTTCTCTTTT
Found at i:616546 original size:19 final size:19
Alignment explanation
Indices: 616522--616570 Score: 89
Period size: 19 Copynumber: 2.6 Consensus size: 19
616512 ACAAGTAACT
616522 GTATCGATACATAAGTGTC
1 GTATCGATACATAAGTGTC
*
616541 GTATCGATACATAAGTGTT
1 GTATCGATACATAAGTGTC
616560 GTATCGATACA
1 GTATCGATACA
616571 ATGTATCGCT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
19 29 1.00
ACGTcount: A:0.33, C:0.14, G:0.20, T:0.33
Consensus pattern (19 bp):
GTATCGATACATAAGTGTC
Found at i:618638 original size:24 final size:26
Alignment explanation
Indices: 618611--618659 Score: 66
Period size: 27 Copynumber: 1.9 Consensus size: 26
618601 ATCAAAATTT
618611 ATTCAT-C-GGGGACACTCCAACCTC
1 ATTCATCCAGGGGACACTCCAACCTC
*
618635 ATTCCTCCGAGGGGACACTCCAACC
1 ATTCATCC-AGGGGACACTCCAACC
618660 CCGTTTTCAA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
24 5 0.24
25 1 0.05
27 15 0.71
ACGTcount: A:0.24, C:0.39, G:0.18, T:0.18
Consensus pattern (26 bp):
ATTCATCCAGGGGACACTCCAACCTC
Found at i:623716 original size:16 final size:14
Alignment explanation
Indices: 623695--623729 Score: 52
Period size: 14 Copynumber: 2.4 Consensus size: 14
623685 CACACACAAA
623695 AAAAAGAAGAAAAGAG
1 AAAAAG-AGAAAA-AG
623711 AAAAAGAGAAAAAG
1 AAAAAGAGAAAAAG
623725 AAAAA
1 AAAAA
623730 ACAGAATAGA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 7 0.37
15 6 0.32
16 6 0.32
ACGTcount: A:0.80, C:0.00, G:0.20, T:0.00
Consensus pattern (14 bp):
AAAAAGAGAAAAAG
Found at i:623730 original size:8 final size:8
Alignment explanation
Indices: 623693--623735 Score: 50
Period size: 8 Copynumber: 5.2 Consensus size: 8
623683 TCCACACACA
623693 AAAAAAAG
1 AAAAAAAG
*
623701 AAGAAAAG
1 AAAAAAAG
*
623709 AGAAAAAG
1 AAAAAAAG
*
623717 AGAAAAAG
1 AAAAAAAG
623725 AAAAAACAG
1 AAAAAA-AG
623734 AA
1 AA
623736 TAGAAAATCT
Statistics
Matches: 30, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
8 26 0.87
9 4 0.13
ACGTcount: A:0.79, C:0.02, G:0.19, T:0.00
Consensus pattern (8 bp):
AAAAAAAG
Found at i:624815 original size:31 final size:31
Alignment explanation
Indices: 624749--624879 Score: 135
Period size: 30 Copynumber: 4.3 Consensus size: 31
624739 ATACCTTCTT
*
624749 AAAGTCCACGACTCAGTGGCATTTTGTC-CC
1 AAAGTCCACGACTCAGTGGCATTTTTTCTCC
*
624779 AAAGTCCACGACTCAGTGACATTTTTTCTCC
1 AAAGTCCACGACTCAGTGGCATTTTTTCTCC
* * *
624810 AAAGTCCACAACTTAGTGGCAATCTCTTT-T-C
1 AAAGTCCACGACTCAGTGGC-AT-TTTTTCTCC
* * *
624841 AAAGTCCAAGACTCAG-GGCATCTTTTCTTC
1 AAAGTCCACGACTCAGTGGCATTTTTTCTCC
*
624871 AAAGCCCAC
1 AAAGTCCAC
624880 AACTTTGTGG
Statistics
Matches: 83, Mismatches: 13, Indels: 10
0.78 0.12 0.09
Matches are distributed among these distances:
28 3 0.04
29 3 0.04
30 37 0.45
31 33 0.40
32 3 0.04
33 4 0.05
ACGTcount: A:0.27, C:0.29, G:0.15, T:0.28
Consensus pattern (31 bp):
AAAGTCCACGACTCAGTGGCATTTTTTCTCC
Found at i:624924 original size:34 final size:35
Alignment explanation
Indices: 624868--624960 Score: 103
Period size: 34 Copynumber: 2.9 Consensus size: 35
624858 GCATCTTTTC
**
624868 TTCAAAGCCCACAACTTTGTGGCACCCTTTTC-TT
1 TTCAAAGCCCACAACTCCGTGGCACCCTTTTCATT
624902 TTCAAAGCCCACAACTCCGTGGCA------TCATT
1 TTCAAAGCCCACAACTCCGTGGCACCCTTTTCATT
*
624931 TT-AAAGTCCACAACTCCGTGGCACCCTTTT
1 TTCAAAGCCCACAACTCCGTGGCACCCTTTT
624961 AAGTCCACAA
Statistics
Matches: 49, Mismatches: 3, Indels: 14
0.74 0.05 0.21
Matches are distributed among these distances:
28 22 0.45
29 4 0.08
34 23 0.47
ACGTcount: A:0.24, C:0.33, G:0.13, T:0.30
Consensus pattern (35 bp):
TTCAAAGCCCACAACTCCGTGGCACCCTTTTCATT
Found at i:624941 original size:28 final size:28
Alignment explanation
Indices: 624900--624982 Score: 123
Period size: 28 Copynumber: 3.0 Consensus size: 28
624890 CACCCTTTTC
*
624900 TTTTCAAAGCCCACAACTCCGTGGCATCA
1 TTTT-AAAGTCCACAACTCCGTGGCATCA
* *
624929 TTTTAAAGTCCACAACTCCGTGGCACCC
1 TTTTAAAGTCCACAACTCCGTGGCATCA
624957 TTTT-AAGTCCACAACTCCGTGGCATC
1 TTTTAAAGTCCACAACTCCGTGGCATC
624983 TTTCTCCTTT
Statistics
Matches: 50, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
27 21 0.42
28 25 0.50
29 4 0.08
ACGTcount: A:0.25, C:0.34, G:0.14, T:0.27
Consensus pattern (28 bp):
TTTTAAAGTCCACAACTCCGTGGCATCA
Found at i:625085 original size:49 final size:49
Alignment explanation
Indices: 625025--625924 Score: 892
Period size: 49 Copynumber: 18.6 Consensus size: 49
625015 GGCATCTTCT
625025 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATC
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATC
* * * *
625074 TTTAAGACCAATGTTGCTGGCCTTGAATCAGCACATTGGCA----C--C
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATC
* * *
625117 TTTAAGTCCAATATCACTGGCCATGAATTAGCATATTGGCACCTTGC--C
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTT-CATC
* * * *
625165 TTTAAGACCAATGTCGCTGGCCTTGAATTAGCACATTGG------CA-C
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATC
* * *
625207 ---AAG-CCTAGTATCGCTAGCCTTGAATCAGCATATTGGCGCCTTTATCATC
1 TTTAAGTCC-AATATCGCTGGCCTTGAATCAGCATATTGGCACC--T-TCATC
*
625256 TTTAAGTCCAATGTCGCTGGCCTTGAATCAGCATATTGGCACCTTCATC
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATC
* * *
625305 TTTAAGTCCAGTATCGCTGGCTTTGAATCAGCATATTGGCGCCTTTGTCATC
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACC--T-TCATC
* *
625357 TTTAAGTCCAATGTCGCTGGCCTTGAATCAACATATTGGCACCTTCATC
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATC
* * *
625406 TTTAAGTCCAGTATCGCTGGCCTTGAATCAGCATATTAGCGCCTATGTCATC
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACC--T-TCATC
* * * *
625458 TTTAAGACCAATGTCGCTAGCCTTGAATCAGCACATTGGCACCTTCATC
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATC
* * *
625507 TTTAAGTCTAGTATCGCTGGCCTTGAATCAGCATATTGGCGCCTTTGTCATC
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACC--T-TCATC
*
625559 TTTAAGTCCAATGTCGCTGGCCTTGAATCAGCATATTGGCACCTTCATC
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATC
* * * *
625608 TTTAAGTCTAGTATCGCTAGCCTTGAATCAGCATATTGGCGCCTTTATCATC
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACC--T-TCATC
* * * *
625660 TTTAAGACCAATGTCGCTGGCCTTGAATCGGCACATTGGCACCTT-ATC
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATC
* *
625708 TTTAAG-CACAATATCGCTGGTCTTGAATCAGCATATTGGCACCTT-GTC
1 TTTAAGTC-CAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATC
* * * * *
625756 TTTAAGACTAATGTTGCTGGCCTTGAATCAGCACATTGG------CA-C
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATC
* * * * *
625798 ---AAGCCCAATATTGTTGGCCTTGAATCAGCATATTAGCGCCTTTGTCATC
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACC--T-TCATC
* *
625847 TTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTCATC
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATC
* *
625896 TTTAAGTCCAGTATCGCAGGCCTTGAATC
1 TTTAAGTCCAATATCGCTGGCCTTGAATC
625925 TGCACTGTGG
Statistics
Matches: 705, Mismatches: 97, Indels: 98
0.78 0.11 0.11
Matches are distributed among these distances:
38 2 0.00
39 58 0.08
41 1 0.00
42 2 0.00
43 35 0.05
45 1 0.00
47 1 0.00
48 116 0.16
49 243 0.34
50 6 0.01
51 4 0.01
52 234 0.33
53 2 0.00
ACGTcount: A:0.24, C:0.25, G:0.19, T:0.32
Consensus pattern (49 bp):
TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATC
Found at i:625392 original size:101 final size:101
Alignment explanation
Indices: 625213--625924 Score: 1042
Period size: 101 Copynumber: 7.2 Consensus size: 101
625203 GCACAAGCCT
* *
625213 AGTATCGCTAGCCTTGAATCAGCATATTGGCGCCTTTATCATCTTTAAGTCCAATGTCGCTGGCC
1 AGTATCGCTGGCCTTGAATCAGCATATTGGCGCCTTTGTCATCTTTAAGTCCAATGTCGCTGGCC
*
625278 TTGAATCAGCATATTGGCACCTTCATCTTTAAGTCC
66 TTGAATCAGCACATTGGCACCTTCATCTTTAAGTCC
*
625314 AGTATCGCTGGCTTTGAATCAGCATATTGGCGCCTTTGTCATCTTTAAGTCCAATGTCGCTGGCC
1 AGTATCGCTGGCCTTGAATCAGCATATTGGCGCCTTTGTCATCTTTAAGTCCAATGTCGCTGGCC
* *
625379 TTGAATCAACATATTGGCACCTTCATCTTTAAGTCC
66 TTGAATCAGCACATTGGCACCTTCATCTTTAAGTCC
* * * *
625415 AGTATCGCTGGCCTTGAATCAGCATATTAGCGCCTATGTCATCTTTAAGACCAATGTCGCTAGCC
1 AGTATCGCTGGCCTTGAATCAGCATATTGGCGCCTTTGTCATCTTTAAGTCCAATGTCGCTGGCC
*
625480 TTGAATCAGCACATTGGCACCTTCATCTTTAAGTCT
66 TTGAATCAGCACATTGGCACCTTCATCTTTAAGTCC
625516 AGTATCGCTGGCCTTGAATCAGCATATTGGCGCCTTTGTCATCTTTAAGTCCAATGTCGCTGGCC
1 AGTATCGCTGGCCTTGAATCAGCATATTGGCGCCTTTGTCATCTTTAAGTCCAATGTCGCTGGCC
* *
625581 TTGAATCAGCATATTGGCACCTTCATCTTTAAGTCT
66 TTGAATCAGCACATTGGCACCTTCATCTTTAAGTCC
* * *
625617 AGTATCGCTAGCCTTGAATCAGCATATTGGCGCCTTTATCATCTTTAAGACCAATGTCGCTGGCC
1 AGTATCGCTGGCCTTGAATCAGCATATTGGCGCCTTTGTCATCTTTAAGTCCAATGTCGCTGGCC
*
625682 TTGAATCGGCACATTGGCACCTT-ATCTTTAAG-CAC
66 TTGAATCAGCACATTGGCACCTTCATCTTTAAGTC-C
* * * * * *
625717 AATATCGCTGGTCTTGAATCAGCATATTGGCACC-TTG---TCTTTAAGACTAATGTTGCTGGCC
1 AGTATCGCTGGCCTTGAATCAGCATATTGGCGCCTTTGTCATCTTTAAGTCCAATGTCGCTGGCC
*
625778 TTGAATCAGCACATTGG------CA-C---AAGCCC
66 TTGAATCAGCACATTGGCACCTTCATCTTTAAGTCC
* * * *
625804 AATATTGTTGGCCTTGAATCAGCATATTAGCGCCTTTGTCATCTTTAAGTCCAATGTCGCTGGCC
1 AGTATCGCTGGCCTTGAATCAGCATATTGGCGCCTTTGTCATCTTTAAGTCCAATGTCGCTGGCC
625869 TTGAATCAGCACATTGGCACCTTCATCTTTAAGTCC
66 TTGAATCAGCACATTGGCACCTTCATCTTTAAGTCC
*
625905 AGTATCGCAGGCCTTGAATC
1 AGTATCGCTGGCCTTGAATC
625925 TGCACTGTGG
Statistics
Matches: 550, Mismatches: 44, Indels: 34
0.88 0.07 0.05
Matches are distributed among these distances:
87 33 0.06
88 4 0.01
90 1 0.00
91 39 0.07
96 38 0.07
97 2 0.00
98 1 0.00
99 3 0.01
100 39 0.07
101 390 0.71
ACGTcount: A:0.23, C:0.25, G:0.19, T:0.33
Consensus pattern (101 bp):
AGTATCGCTGGCCTTGAATCAGCATATTGGCGCCTTTGTCATCTTTAAGTCCAATGTCGCTGGCC
TTGAATCAGCACATTGGCACCTTCATCTTTAAGTCC
Found at i:625500 original size:202 final size:192
Alignment explanation
Indices: 625025--625924 Score: 1111
Period size: 202 Copynumber: 4.7 Consensus size: 192
625015 GGCATCTTCT
* *
625025 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACC--T-TCATCTTTAAGACCAATG
1 TTTAAGTCCAGTATCGCTGGCCTTGAATCAGCATATTGGCGCCTTTATCATCTTTAAGACCAATG
* * * * *
625087 TTGCTGGCCTTGAATCAGCACATTGGCA----C--CTTTAAGTCCAATATCACTGGCCATGAATT
66 TCGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCCAGTATCGCTGGCCTTGAATC
*
625146 AGCATATTGGCACCTTGC-CTTTAAGACCAATGTCGCTGGCCTTGAATTAGCACATTGGCAC
131 AGCATATTGGCACCTTGCTCTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCAC
* *
625207 ---AAG-CCTAGTATCGCTAGCCTTGAATCAGCATATTGGCGCCTTTATCATCTTTAAGTCCAAT
1 TTTAAGTCC-AGTATCGCTGGCCTTGAATCAGCATATTGGCGCCTTTATCATCTTTAAGACCAAT
* *
625268 GTCGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAGTATCGCTGGCTTTGAAT
65 GTCGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCCAGTATCGCTGGCCTTGAAT
* * * *
625333 CAGCATATTGGCGCCTTTGTCATCTTTAAGTCCAATGTCGCTGGCCTTGAATCAACATATTGGCA
130 CAGCATATTGGCACC-TTG-C-TCTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGG--
625398 CCTTCATC
190 ----CA-C
* * *
625406 TTTAAGTCCAGTATCGCTGGCCTTGAATCAGCATATTAGCGCCTATGTCATCTTTAAGACCAATG
1 TTTAAGTCCAGTATCGCTGGCCTTGAATCAGCATATTGGCGCCTTTATCATCTTTAAGACCAATG
* *
625471 TCGCTAGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCTAGTATCGCTGGCCTTGAATC
66 TCGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCCAGTATCGCTGGCCTTGAATC
* * *
625536 AGCATATTGGCGCCTTTGTCATCTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCATATTGGCAC
131 AGCATATTGGCACC-TTG-C-TCTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGG---
625601 CTTCATC
190 ---CA-C
* *
625608 TTTAAGTCTAGTATCGCTAGCCTTGAATCAGCATATTGGCGCCTTTATCATCTTTAAGACCAATG
1 TTTAAGTCCAGTATCGCTGGCCTTGAATCAGCATATTGGCGCCTTTATCATCTTTAAGACCAATG
* * *
625673 TCGCTGGCCTTGAATCGGCACATTGGCACCTT-ATCTTTAAG-CACAATATCGCTGGTCTTGAAT
66 TCGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTC-CAGTATCGCTGGCCTTGAAT
* *
625736 CAGCATATTGGCACCTTG-TCTTTAAGACTAATGTTGCTGGCCTTGAATCAGCACATTGGCAC
130 CAGCATATTGGCACCTTGCTCTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCAC
* * * * * * *
625798 ---AAGCCCAATATTGTTGGCCTTGAATCAGCATATTAGCGCCTTTGTCATCTTTAAGTCCAATG
1 TTTAAGTCCAGTATCGCTGGCCTTGAATCAGCATATTGGCGCCTTTATCATCTTTAAGACCAATG
*
625860 TCGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCCAGTATCGCAGGCCTTGAATC
66 TCGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCCAGTATCGCTGGCCTTGAATC
625925 TGCACTGTGG
Statistics
Matches: 636, Mismatches: 54, Indels: 50
0.86 0.07 0.07
Matches are distributed among these distances:
178 2 0.00
179 34 0.05
181 1 0.00
182 43 0.07
186 1 0.00
187 84 0.13
188 65 0.10
189 4 0.01
190 2 0.00
191 2 0.00
192 36 0.06
197 37 0.06
198 2 0.00
199 1 0.00
200 4 0.01
201 40 0.06
202 276 0.43
203 2 0.00
ACGTcount: A:0.24, C:0.25, G:0.19, T:0.32
Consensus pattern (192 bp):
TTTAAGTCCAGTATCGCTGGCCTTGAATCAGCATATTGGCGCCTTTATCATCTTTAAGACCAATG
TCGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCCAGTATCGCTGGCCTTGAATC
AGCATATTGGCACCTTGCTCTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCAC
Found at i:625936 original size:49 final size:49
Alignment explanation
Indices: 625813--625937 Score: 144
Period size: 49 Copynumber: 2.5 Consensus size: 49
625803 CAATATTGTT
* * * * *
625813 GGCCTTGAATCAGCATATTAGCGCCTTTGTCATCTTTAAGTCCAATGTCGCT
1 GGCCTTGAATCAGCACATTGGCACC--T-TCATCTTTAAGTCCAATATCGCA
*
625865 GGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCCAGTATCGCA
1 GGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCCAATATCGCA
*
625914 GGCCTTGAATCTGCAC-TGTGGCAC
1 GGCCTTGAATCAGCACAT-TGGCAC
625938 ATTGCAAAAC
Statistics
Matches: 65, Mismatches: 7, Indels: 5
0.84 0.09 0.06
Matches are distributed among these distances:
48 1 0.02
49 41 0.63
50 1 0.02
52 22 0.34
ACGTcount: A:0.22, C:0.27, G:0.21, T:0.30
Consensus pattern (49 bp):
GGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCCAATATCGCA
Found at i:628282 original size:42 final size:43
Alignment explanation
Indices: 628220--628373 Score: 109
Period size: 42 Copynumber: 3.6 Consensus size: 43
628210 CCTGCTTTTC
*
628220 GAGGACAAAGGAAAAAAGGAAAACGAAA-TGCATCCTCCTCTTT
1 GAGGACAAAAGAAAAAAGGAAAA-GAAAGTGCATCCTCCTCTTT
* * ** * *
628263 GAGGACAAAAG-AAATAGGAAAATAAAGTGTGTCTTGCTCTTT
1 GAGGACAAAAGAAAAAAGGAAAAGAAAGTGCATCCTCCTCTTT
* ** *
628305 GAGGACAAAAGGGAAAAGAA-GAGAATG-AAGTGTGTCCTGCTCTTT
1 GAGGACAAAA--GAAAA-AAGGA-AAAGAAAGTGCATCCTCCTCTTT
* * *
628350 GAGGACTAAGGAGAAAAGGAAAAG
1 GAGGACAAAAGAAAAAAGGAAAAG
628374 GCATCTTGCT
Statistics
Matches: 89, Mismatches: 15, Indels: 15
0.75 0.13 0.13
Matches are distributed among these distances:
41 3 0.03
42 36 0.40
43 16 0.18
44 1 0.01
45 30 0.34
46 3 0.03
ACGTcount: A:0.43, C:0.12, G:0.27, T:0.18
Consensus pattern (43 bp):
GAGGACAAAAGAAAAAAGGAAAAGAAAGTGCATCCTCCTCTTT
Found at i:628349 original size:45 final size:42
Alignment explanation
Indices: 628208--628372 Score: 131
Period size: 45 Copynumber: 3.8 Consensus size: 42
628198 AAAAGAGTAC
* * * *
628208 GTCCTGCT-TTTCGAGGACAAAGGAAAAAAGGAAAACGAAA-TGC
1 GTCCTGCTCTTT-GAGGACAAAAG-AAATAGGAAAA-TAAAGTGT
* *
628251 ATCCTCCTCTTTGAGGACAAAAGAAATAGGAAAATAAAGTGT
1 GTCCTGCTCTTTGAGGACAAAAGAAATAGGAAAATAAAGTGT
* * *
628293 GTCTTGCTCTTTGAGGACAAAAGGGAAA-AGAAGAGAATGAAGTGT
1 GTCCTGCTCTTTGAGGACAAAA--GAAATAG--GAAAATAAAGTGT
*
628338 GTCCTGCTCTTTGAGGACTAAGGAGAAA-AGGAAAA
1 GTCCTGCTCTTTGAGGAC-AA-AAGAAATAGGAAAA
628373 GGCATCTTGC
Statistics
Matches: 100, Mismatches: 14, Indels: 16
0.77 0.11 0.12
Matches are distributed among these distances:
41 3 0.03
42 31 0.31
43 22 0.22
44 7 0.07
45 34 0.34
46 2 0.02
47 1 0.01
ACGTcount: A:0.40, C:0.13, G:0.26, T:0.21
Consensus pattern (42 bp):
GTCCTGCTCTTTGAGGACAAAAGAAATAGGAAAATAAAGTGT
Found at i:628471 original size:61 final size:60
Alignment explanation
Indices: 628411--628645 Score: 235
Period size: 61 Copynumber: 3.9 Consensus size: 60
628401 AAAGGAAAAG
* * *
628411 GCATCCTACTCTTTAAGGACTGAAAAGTGCCACCAACACGTGTGTGCCTTGAAAAGA-AAA
1 GCATCCTACTCTTTAAGGACTGAAAAGTGCCACCAACTCGAGTG-GCTTTGAAAAGAGAAA
* * * * * * *
628471 GGCGTCCTACTCTTTGAGAACTGGAAGGTGCCACCAACTTGCGTGGGCTTTGCAAAA-AGAAA
1 -GCATCCTACTCTTTAAGGACTGAAAAGTGCCACCAACTCGAGT-GGCTTTG-AAAAGAGAAA
* * *
628533 GCATCCTACTCTTTGAGGACTG-GAAGTTGCCACCAACTCGAGTGGTCTTTGAAAGGAGAAA
1 GCATCCTACTCTTTAAGGACTGAAAAG-TGCCACCAACTCGAGTGG-CTTTGAAAAGAGAAA
* *
628594 GCATCCTACTCTTTAAGGACTAGAAAA-TGCCACCAACTTGTGTGGGCTTTGA
1 GCATCCTACTCTTTAAGGACT-GAAAAGTGCCACCAACTCGAGT-GGCTTTGA
628646 GAGGTGTCCT
Statistics
Matches: 145, Mismatches: 20, Indels: 18
0.79 0.11 0.10
Matches are distributed among these distances:
60 7 0.05
61 125 0.86
62 11 0.08
63 2 0.01
ACGTcount: A:0.29, C:0.23, G:0.24, T:0.24
Consensus pattern (60 bp):
GCATCCTACTCTTTAAGGACTGAAAAGTGCCACCAACTCGAGTGGCTTTGAAAAGAGAAA
Found at i:628628 original size:122 final size:122
Alignment explanation
Indices: 628411--628644 Score: 303
Period size: 122 Copynumber: 1.9 Consensus size: 122
628401 AAAGGAAAAG
* *
628411 GCATCCTACTCTTTAAGGACTGAAAAGTGCCACCAACACGTGTGTGCCTTGAAAAGAAAAGGCGT
1 GCATCCTACTCTTTAAGGACTGAAAAGTGCCACCAACACGAGTGTGCCTTGAAAAGAAAAGGCAT
* * **
628476 CCTACTCTTTGAGAACTGGAAGGTGCCACCAACTTGCGTGGGCTTTGCAAAAAGAAA
66 CCTACTCTTTAAGAACTAGAAAATGCCACCAACTTGCGTGGGCTTTGCAAAAAGAAA
* * * * *
628533 GCATCCTACTCTTTGAGGACTG-GAAGTTGCCACCAACTCGAGTG-GTCTTTGAAAGGAGAAA-G
1 GCATCCTACTCTTTAAGGACTGAAAAG-TGCCACCAACACGAGTGTG-CCTTGAAAAGA-AAAGG
* *
628595 CATCCTACTCTTTAAGGACTAGAAAATGCCACCAACTTGTGTGGGCTTTG
63 CATCCTACTCTTTAAGAACTAGAAAATGCCACCAACTTGCGTGGGCTTTG
628645 AGAGGTGTCC
Statistics
Matches: 96, Mismatches: 13, Indels: 6
0.83 0.11 0.05
Matches are distributed among these distances:
121 4 0.04
122 89 0.93
123 3 0.03
ACGTcount: A:0.29, C:0.23, G:0.24, T:0.24
Consensus pattern (122 bp):
GCATCCTACTCTTTAAGGACTGAAAAGTGCCACCAACACGAGTGTGCCTTGAAAAGAAAAGGCAT
CCTACTCTTTAAGAACTAGAAAATGCCACCAACTTGCGTGGGCTTTGCAAAAAGAAA
Found at i:628686 original size:55 final size:55
Alignment explanation
Indices: 628596--628725 Score: 206
Period size: 55 Copynumber: 2.4 Consensus size: 55
628586 AGGAGAAAGC
* * * *
628596 ATCCTACTCTTTAAGGACTAGAAAATGCCACCAACTTGTGTGGGCTTTGAGAGGT
1 ATCCTGCTCTTTGAGGACTAGAAAATGCCACCAACTTGTGTGGGCTTTAAAAGGT
* *
628651 GTCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTAAAAGGT
1 ATCCTGCTCTTTGAGGACTAGAAAATGCCACCAACTTGTGTGGGCTTTAAAAGGT
628706 ATCCTGCTCTTTGAGGACTA
1 ATCCTGCTCTTTGAGGACTA
628726 AAAGGTGAAA
Statistics
Matches: 67, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
55 67 1.00
ACGTcount: A:0.25, C:0.21, G:0.25, T:0.30
Consensus pattern (55 bp):
ATCCTGCTCTTTGAGGACTAGAAAATGCCACCAACTTGTGTGGGCTTTAAAAGGT
Found at i:628852 original size:148 final size:149
Alignment explanation
Indices: 628582--628876 Score: 486
Period size: 148 Copynumber: 2.0 Consensus size: 149
628572 GAGTGGTCTT
*
628582 TGAAAGGAGAAAGCATCCTACTCTTTAAGGACTAGAAAATGCCACCAACTTGTGTGGGCTTTGAG
1 TGAAAGGAGAAAGCATCCTACTCTTTAAGGACTAGAAAATGCCACCAACTTGTGTGGGCTTTAAG
** *
628647 AGGTGTCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTAAAAGGTATCCTG
66 AGGCATCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTAAAAGGCATCCTG
628712 CTCTTTGAGGACTAAAAGG
131 CTCTTTGAGGACTAAAAGG
* * *
628731 TGAAAGGAGAGAGCATCCTACTCTTTAAGGACT-GGAAGTGCCACCAACCTT-TGTGGGCTTTAA
1 TGAAAGGAGAAAGCATCCTACTCTTTAAGGACTAGAAAATGCCACCAA-CTTGTGTGGGCTTTAA
* *
628794 GAGGCATCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCT
65 GAGGCATCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTAAAAGGCATCCT
628859 GCTCTTTGAGGACTAAAA
130 GCTCTTTGAGGACTAAAA
628877 AATGCCACCA
Statistics
Matches: 136, Mismatches: 9, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
148 101 0.74
149 35 0.26
ACGTcount: A:0.27, C:0.20, G:0.26, T:0.26
Consensus pattern (149 bp):
TGAAAGGAGAAAGCATCCTACTCTTTAAGGACTAGAAAATGCCACCAACTTGTGTGGGCTTTAAG
AGGCATCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTAAAAGGCATCCTG
CTCTTTGAGGACTAAAAGG
Found at i:628859 original size:55 final size:55
Alignment explanation
Indices: 628743--628975 Score: 303
Period size: 55 Copynumber: 4.3 Consensus size: 55
628733 AAAGGAGAGA
* * *
628743 GCATCCTACTCTTTAAGGACTGG-AAGTGCCACCAACCTT-TGTGGGCTTT-AAGAG
1 GCATCCTGCTCTTTGAGGACTGGAAAATGCCACCAA-CTTGTGTGGGCTTTGAA-AG
628797 GCATCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAG
1 GCATCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAG
* ** * * *
628852 GCGTCCTGCTCTTTGAGGACTAAAAAATGCCACCAACTTGTGTCGACTTTAAAAG
1 GCATCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAG
* * *
628907 GCGTCCTGCTCTTTGAGGACT-GAAAGTTGCCACCAACTTGTGTAGGCTTTGAAAG
1 GCATCCTGCTCTTTGAGGACTGGAAA-ATGCCACCAACTTGTGTGGGCTTTGAAAG
628962 GCATCCTGCTCTTT
1 GCATCCTGCTCTTT
628976 TAGAACTAAA
Statistics
Matches: 160, Mismatches: 15, Indels: 7
0.88 0.08 0.04
Matches are distributed among these distances:
54 27 0.17
55 131 0.82
56 2 0.01
ACGTcount: A:0.24, C:0.24, G:0.24, T:0.29
Consensus pattern (55 bp):
GCATCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAG
Found at i:628888 original size:203 final size:207
Alignment explanation
Indices: 628532--628932 Score: 587
Period size: 203 Copynumber: 1.9 Consensus size: 207
628522 GCAAAAAGAA
* *
628532 AGCATCCTACTCTTTGAGGACTGGAAGTTGCCACCAACTCGAGTGGTCTTTGAAAGGAGAAAGCA
1 AGCATCCTACTCTTTAAGGACTGGAAGTTGCCACCAACTCGAGTGGGCTTT-AAAGGAG--AGCA
* *
628597 TCCTACTCTTTAAGGACTAGAAAATGCCACCAACTTGTGTGGGCTTTGAGAGGTGTCCTGCTCTT
63 TCCTACTCTTTAAGGACTAGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCTT
** * * *
628662 TGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTAAAAGGTATCCTGCTCTTTGAGGACTAA
128 TGAGGACTAAAAAATGCCACCAACTTGTGTCGACTTTAAAAGGCATCCTGCTCTTTGAGGACTAA
628727 AAGGTGAAAGGAGAG
193 AAGGTGAAAGGAGAG
**
628742 AGCATCCTACTCTTTAAGGACTGGAAG-TGCCACCAAC-CTTTGTGGGCTTT-AA-GAG-GCATC
1 AGCATCCTACTCTTTAAGGACTGGAAGTTGCCACCAACTC-GAGTGGGCTTTAAAGGAGAGCATC
* * *
628802 CTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCTTTG
65 CTACTCTTTAAGGACTAGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCTTTG
* *
628867 AGGACTAAAAAATGCCACCAACTTGTGTCGACTTTAAAAGGCGTCCTGCTCTTTGAGGACTGAAA
130 AGGACTAAAAAATGCCACCAACTTGTGTCGACTTTAAAAGGCATCCTGCTCTTTGAGGACTAAAA
628932 G
195 G
628933 TTGCCACCAA
Statistics
Matches: 174, Mismatches: 16, Indels: 9
0.87 0.08 0.05
Matches are distributed among these distances:
203 124 0.71
206 3 0.02
207 2 0.01
208 1 0.01
209 18 0.10
210 26 0.15
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.27
Consensus pattern (207 bp):
AGCATCCTACTCTTTAAGGACTGGAAGTTGCCACCAACTCGAGTGGGCTTTAAAGGAGAGCATCC
TACTCTTTAAGGACTAGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCTTTGA
GGACTAAAAAATGCCACCAACTTGTGTCGACTTTAAAAGGCATCCTGCTCTTTGAGGACTAAAAG
GTGAAAGGAGAG
Found at i:628927 original size:28 final size:28
Alignment explanation
Indices: 628843--628927 Score: 64
Period size: 28 Copynumber: 3.1 Consensus size: 28
628833 CTTGTGTGGG
*
628843 CTTTGAAAGGCGTCCTGCTCTTTGAGGA
1 CTTTAAAAGGCGTCCTGCTCTTTGAGGA
** * ** ** * **
628871 CTAAAAAATGCCACCAACT-TGTGTCGA
1 CTTTAAAAGGCGTCCTGCTCTTTGAGGA
628898 CTTTAAAAGGCGTCCTGCTCTTTGAGGA
1 CTTTAAAAGGCGTCCTGCTCTTTGAGGA
628926 CT
1 CT
628928 GAAAGTTGCC
Statistics
Matches: 35, Mismatches: 21, Indels: 2
0.60 0.36 0.03
Matches are distributed among these distances:
27 17 0.49
28 18 0.51
ACGTcount: A:0.25, C:0.24, G:0.22, T:0.29
Consensus pattern (28 bp):
CTTTAAAAGGCGTCCTGCTCTTTGAGGA
Found at i:628996 original size:258 final size:264
Alignment explanation
Indices: 628475--629087 Score: 758
Period size: 258 Copynumber: 2.3 Consensus size: 264
628465 AGAAAAGGCG
* * *
628475 TCCTACTCTTTGAGAACTGGAAGGTGCCACCAACTTGCGTGGGCTTTGCAAAAAGAAAGCATCCT
1 TCCTACTCTTTGAGGACTGGAAGGTGCCACCAACTTGTGTGGGCTTT----AAAGAAGGCATCCT
* ** *
628540 ACTCTTTGAGGACTGGAAGTTGCCACCAACTCGAGTGGTCTTTGAAAGGAGAAAGCATCCTACTC
62 GCTCTTTGAGGACTGGAAAATGCCACCAACTCGAGTGGGCTTTGAAA-GAG--AGCATCCTACTC
* * * * * *
628605 TTTAAGGACTAGAAAATGCCACCAACTTGTGTGGGCTTTGAGAGGTGTCCTGCTCTTTGAGGACT
124 TTTAAGGACTAAAAAATGCCACCAACTTGTGTCGACTTTAAAAGGCGTCCTGCTCTTTGAGGACT
* * *
628670 GGAAAATGCCACCAACTTGTGTGGGCTTTAAAAGGTATCCTGCTCTTTGAGGACTAAAAGGTGAA
189 GGAAAATGCCACCAACTTGTGTAGGCTTTAAAAGGCATCCTGCTCTTTGAGAACTAAAAGGTGAA
*
628735 AGGAGAGAGCA
254 AGGAAAGAGCA
*
628746 TCCTACTCTTTAAGGACTGGAA-GTGCCACCAACCTT-TGTGGGCTTT-AAG-AGGCATCCTGCT
1 TCCTACTCTTTGAGGACTGGAAGGTGCCACCAA-CTTGTGTGGGCTTTAAAGAAGGCATCCTGCT
* * * * *
628807 CTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTG-AA-AG-GCGTCCTGCTCTTTGAG
65 CTTTGAGGACTGGAAAATGCCACCAACTCGAGTGGGCTTTGAAAGAGAGCATCCTACTCTTTAAG
628869 GACTAAAAAATGCCACCAACTTGTGTCGACTTTAAAAGGCGTCCTGCTCTTTGAGGACT-GAAAG
130 GACTAAAAAATGCCACCAACTTGTGTCGACTTTAAAAGGCGTCCTGCTCTTTGAGGACTGGAAA-
* * * *
628933 TTGCCACCAACTTGTGTAGGCTTTGAAAGGCATCCTGCTCTTTTAGAACTAAAGGGTGAAAGGAA
194 ATGCCACCAACTTGTGTAGGCTTTAAAAGGCATCCTGCTCTTTGAGAACTAAAAGGTGAAAGGAA
*
628998 AGAGCG
259 AGAGCA
* * *
629004 TCCTGCTCTTTGAGGACTAGAAGGTGCCATCAACTTGTGTGGGCTTTAAAAGGAAAAGGCATCCT
1 TCCTACTCTTTGAGGACTGGAAGGTGCCACCAACTTGTGTGGGCTTT-AAA-G--AAGGCATCCT
*
629069 GTTCTTTGAGGACT-GAAAA
62 GCTCTTTGAGGACTGGAAAA
629088 GTGAAGGGAG
Statistics
Matches: 299, Mismatches: 33, Indels: 27
0.83 0.09 0.08
Matches are distributed among these distances:
257 4 0.01
258 151 0.51
259 19 0.06
261 4 0.01
262 1 0.00
263 2 0.01
264 51 0.17
265 25 0.08
270 19 0.06
271 23 0.08
ACGTcount: A:0.27, C:0.21, G:0.26, T:0.27
Consensus pattern (264 bp):
TCCTACTCTTTGAGGACTGGAAGGTGCCACCAACTTGTGTGGGCTTTAAAGAAGGCATCCTGCTC
TTTGAGGACTGGAAAATGCCACCAACTCGAGTGGGCTTTGAAAGAGAGCATCCTACTCTTTAAGG
ACTAAAAAATGCCACCAACTTGTGTCGACTTTAAAAGGCGTCCTGCTCTTTGAGGACTGGAAAAT
GCCACCAACTTGTGTAGGCTTTAAAAGGCATCCTGCTCTTTGAGAACTAAAAGGTGAAAGGAAAG
AGCA
Found at i:629399 original size:20 final size:19
Alignment explanation
Indices: 629374--629429 Score: 85
Period size: 20 Copynumber: 2.8 Consensus size: 19
629364 AAAAATGCCT
*
629374 AAATGTATCGATACATTGCA
1 AAATGTATCGATACAATG-A
629394 AAATGTATCGATACAATGA
1 AAATGTATCGATACAATGA
629413 ATAATGTATCGATACAA
1 A-AATGTATCGATACAA
629430 ATTGTTAAAA
Statistics
Matches: 34, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
19 2 0.06
20 32 0.94
ACGTcount: A:0.45, C:0.12, G:0.14, T:0.29
Consensus pattern (19 bp):
AAATGTATCGATACAATGA
Found at i:630244 original size:45 final size:42
Alignment explanation
Indices: 630179--630276 Score: 115
Period size: 45 Copynumber: 2.2 Consensus size: 42
630169 ATGATAAAAG
*
630179 AAAAAGGAAAATAAATTGCGTCATACTCTTTGAGAACTAGAAGGGA
1 AAAAAGG-AAATAAAGTGCGTCATACTCTTTGAGAAC-A-AA-GGA
* * * *
630225 AAAAAGGAAATGAAGTGCGTCCTGCTCTTTGAGGACAAAGGA
1 AAAAAGGAAATAAAGTGCGTCATACTCTTTGAGAACAAAGGA
630267 AAAAAGGAAA
1 AAAAAGGAAA
630277 AGGCATCTTG
Statistics
Matches: 47, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
42 13 0.28
43 2 0.04
44 1 0.02
45 24 0.51
46 7 0.15
ACGTcount: A:0.46, C:0.11, G:0.24, T:0.18
Consensus pattern (42 bp):
AAAAAGGAAATAAAGTGCGTCATACTCTTTGAGAACAAAGGA
Found at i:630381 original size:61 final size:62
Alignment explanation
Indices: 630311--630605 Score: 242
Period size: 61 Copynumber: 4.9 Consensus size: 62
630301 GGAGAAAAGG
* *
630311 AGGCATCCTACTCTTTGAGGACTGAAAAGTGCCACCAACTCGTGTGGGCCTTGAAAATA-AA
1 AGGCATCCTACTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCCTTGAAAAGAGAA
* * * * * ** *
630372 AGGCGTCCTACTCTTTGAGGGCTGGAAGGTGCCACCAACTTGCGTGGGTTTTGCAAAGAGAA
1 AGGCATCCTACTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCCTTGAAAAGAGAA
* * * * * *
630434 A-GCATCCTACTCTTTGAGGACTG-GAAGTTGCCACCAACTCGAGTGGTCTTTGAAAGGAGAA
1 AGGCATCCTACTCTTTGAGGACTGAAAAG-TGCCACCAACTTGTGTGGGCCTTGAAAAGAGAA
* * * * *
630495 A-GCATCTTGCTTTTTAAGGACTAGAAAA-TGCCACCAACTTGTGTGGGCTTTG---AGAG--
1 AGGCATCCTACTCTTTGAGGACT-GAAAAGTGCCACCAACTTGTGTGGGCCTTGAAAAGAGAA
* *
630551 -GTG--TCCTGCTCTTTGAGGACTGGAAAA-TGCCACCAACTTGTGTGGG-CTTTAAAAG
1 AG-GCATCCTACTCTTTGAGGACT-GAAAAGTGCCACCAACTTGTGTGGGCCTTGAAAAG
630606 GCATCCTGCT
Statistics
Matches: 190, Mismatches: 35, Indels: 22
0.77 0.14 0.09
Matches are distributed among these distances:
54 2 0.01
55 39 0.21
57 3 0.02
58 3 0.02
60 2 0.01
61 135 0.71
62 4 0.02
63 2 0.01
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (62 bp):
AGGCATCCTACTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCCTTGAAAAGAGAA
Found at i:630530 original size:122 final size:122
Alignment explanation
Indices: 630313--630546 Score: 283
Period size: 122 Copynumber: 1.9 Consensus size: 122
630303 AGAAAAGGAG
* * *
630313 GCATCCTACTCTTTGAGGACTGAAAAGTGCCACCAACTCGTGTGGGCCTTGAAAATAAAAGGCGT
1 GCATCCTACTCTTTGAGGACTGAAAAGTGCCACCAACTCGAGTGGGCCTTGAAAAGAAAAGGCAT
* * * ** *
630378 CCTACTCTTTGAGGGCTGGAAGGTGCCACCAACTTGCGTGGGTTTTGCAAAGAGAAA
66 CCTACTCTTTAAGGACTAGAAAATGCCACCAACTTGCGTGGGCTTTGCAAAGAGAAA
* * * *
630435 GCATCCTACTCTTTGAGGACTG-GAAGTTGCCACCAACTCGAGTGGTCTTTGAAAGGAGAAA-GC
1 GCATCCTACTCTTTGAGGACTGAAAAG-TGCCACCAACTCGAGTGGGCCTTGAAAAGA-AAAGGC
* * * *
630498 ATCTTGCTTTTTAAGGACTAGAAAATGCCACCAACTTGTGTGGGCTTTG
64 ATCCTACTCTTTAAGGACTAGAAAATGCCACCAACTTGCGTGGGCTTTG
630547 AGAGGTGTCC
Statistics
Matches: 93, Mismatches: 17, Indels: 4
0.82 0.15 0.04
Matches are distributed among these distances:
121 3 0.03
122 87 0.94
123 3 0.03
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (122 bp):
GCATCCTACTCTTTGAGGACTGAAAAGTGCCACCAACTCGAGTGGGCCTTGAAAAGAAAAGGCAT
CCTACTCTTTAAGGACTAGAAAATGCCACCAACTTGCGTGGGCTTTGCAAAGAGAAA
Found at i:631747 original size:45 final size:42
Alignment explanation
Indices: 631673--631770 Score: 115
Period size: 45 Copynumber: 2.2 Consensus size: 42
631663 AGGATAAAAG
* *
631673 AAAAAGGAAAATAAATTGCGTCCTACTCTTTGAGAACTAGAAGGGA
1 AAAAAGG-AAATAAAGTGCATCCTACTCTTTGAGAAC-A-AA-GGA
* * *
631719 AAAAAGGAAATGAAGTGCATCCTGCTCTTTGAGGACAAAGGA
1 AAAAAGGAAATAAAGTGCATCCTACTCTTTGAGAACAAAGGA
631761 AAAAAGGAAA
1 AAAAAGGAAA
631771 AGGCATCTTG
Statistics
Matches: 47, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
42 13 0.28
43 2 0.04
44 1 0.02
45 24 0.51
46 7 0.15
ACGTcount: A:0.46, C:0.12, G:0.23, T:0.18
Consensus pattern (42 bp):
AAAAAGGAAATAAAGTGCATCCTACTCTTTGAGAACAAAGGA
Found at i:631872 original size:61 final size:60
Alignment explanation
Indices: 631810--632044 Score: 215
Period size: 61 Copynumber: 3.9 Consensus size: 60
631800 AAAGGAAAAG
* * *
631810 GCATCCTACTCTTTGAGGACTGAAAAGTGCCACCAACACGTGTGTGCCTTGAAAAGA-AAA
1 GCATCCTACTCTTTGAGGACTGAAAAGTGCCACCAACTCGAGTG-GCTTTGAAAAGAGAAA
* * * * * * * *
631870 GGCGTCCTACTCTTTGAGGGCTGGAAGGTGCCACCAACTTGCGTGGGTTTTGCAAAGAGAAA
1 -GCATCCTACTCTTTGAGGACTGAAAAGTGCCACCAACTCGAGT-GGCTTTGAAAAGAGAAA
* *
631932 GCATCCTACTCTTTGAGGACTG-GAAGTTGCCACCAACTCGAGTGGTCTTTGAAAGGAGAAA
1 GCATCCTACTCTTTGAGGACTGAAAAG-TGCCACCAACTCGAGTGG-CTTTGAAAAGAGAAA
* * * * * *
631993 GCATCTTGCTTTTTAAGGACTAGAAAA-TGCCACCAACTTGTGTGGGCTTTGA
1 GCATCCTACTCTTTGAGGACT-GAAAAGTGCCACCAACTCGAGT-GGCTTTGA
632045 GAGGTGTCCT
Statistics
Matches: 141, Mismatches: 26, Indels: 14
0.78 0.14 0.08
Matches are distributed among these distances:
60 4 0.03
61 128 0.91
62 7 0.05
63 2 0.01
ACGTcount: A:0.27, C:0.21, G:0.26, T:0.26
Consensus pattern (60 bp):
GCATCCTACTCTTTGAGGACTGAAAAGTGCCACCAACTCGAGTGGCTTTGAAAAGAGAAA
Found at i:632027 original size:122 final size:122
Alignment explanation
Indices: 631810--632043 Score: 276
Period size: 122 Copynumber: 1.9 Consensus size: 122
631800 AAAGGAAAAG
* *
631810 GCATCCTACTCTTTGAGGACTGAAAAGTGCCACCAACACGTGTGTGCCTTGAAAAGAAAAGGCGT
1 GCATCCTACTCTTTGAGGACTGAAAAGTGCCACCAACACGAGTGTGCCTTGAAAAGAAAAGGCAT
* * * ** *
631875 CCTACTCTTTGAGGGCTGGAAGGTGCCACCAACTTGCGTGGGTTTTGCAAAGAGAAA
66 CCTACTCTTTAAGGACTAGAAAATGCCACCAACTTGCGTGGGCTTTGCAAAGAGAAA
* * * *
631932 GCATCCTACTCTTTGAGGACTG-GAAGTTGCCACCAACTCGAGTG-GTCTTTGAAAGGAGAAA-G
1 GCATCCTACTCTTTGAGGACTGAAAAG-TGCCACCAACACGAGTGTG-CCTTGAAAAGA-AAAGG
* * * *
631994 CATCTTGCTTTTTAAGGACTAGAAAATGCCACCAACTTGTGTGGGCTTTG
63 CATCCTACTCTTTAAGGACTAGAAAATGCCACCAACTTGCGTGGGCTTTG
632044 AGAGGTGTCC
Statistics
Matches: 93, Mismatches: 16, Indels: 6
0.81 0.14 0.05
Matches are distributed among these distances:
121 4 0.04
122 86 0.92
123 3 0.03
ACGTcount: A:0.27, C:0.21, G:0.26, T:0.26
Consensus pattern (122 bp):
GCATCCTACTCTTTGAGGACTGAAAAGTGCCACCAACACGAGTGTGCCTTGAAAAGAAAAGGCAT
CCTACTCTTTAAGGACTAGAAAATGCCACCAACTTGCGTGGGCTTTGCAAAGAGAAA
Found at i:632092 original size:55 final size:54
Alignment explanation
Indices: 631805--632130 Score: 213
Period size: 61 Copynumber: 5.6 Consensus size: 54
631795 GGAGAAAAGG
* ** * *
631805 AAAAGGCATCCTACTCTTTGAGGACTGAAAAGTGCCACCAACACGTGTGTGCCTTGAAAAG
1 AAAAGGCATCCTGCTCTTTGAGGACTGAAAA-TGCCACCAACTTGTGTG-GGCTT-----T
* * * ** * *
631866 AAAAGGCGTCCTACTCTTTGAGGGCTGGAAGGTGCCACCAACTTGCGTGGGTTTT
1 AAAAGGCATCCTGCTCTTTGAGGACT-GAAAATGCCACCAACTTGTGTGGGCTTT
* ** * * *
631921 GCAAAGAGAAAGCATCCTACTCTTTGAGGACTGGAAGTTGCCACCAACTCGAGTGGTCTTT
1 --AAA-AG---GCATCCTGCTCTTTGAGGACT-GAAAATGCCACCAACTTGTGTGGGCTTT
* * *
631982 GAAAGGAGAAAGCATCTTGCTTTTTAAGGACTAGAAAATGCCACCAACTTGTGTGGGCTTT
1 -AAA--AG---GCATCCTGCTCTTTGAGGACT-GAAAATGCCACCAACTTGTGTGGGCTTT
* * **
632043 GAGAGGTGTCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTT
1 AAAAGGCATCCTGCTCTTTGAGGACT-GAAAATGCCACCAACTTGTGTGGGCTTT
632098 AAAAGGCATCCTGCTCTTTGAGGACT-AAAATGC
1 AAAAGGCATCCTGCTCTTTGAGGACTGAAAATGC
632131 GAAAGGAGAG
Statistics
Matches: 217, Mismatches: 40, Indels: 24
0.77 0.14 0.09
Matches are distributed among these distances:
53 7 0.03
55 66 0.30
57 3 0.01
58 4 0.02
60 7 0.03
61 127 0.59
62 3 0.01
ACGTcount: A:0.27, C:0.21, G:0.26, T:0.26
Consensus pattern (54 bp):
AAAAGGCATCCTGCTCTTTGAGGACTGAAAATGCCACCAACTTGTGTGGGCTTT
Found at i:633245 original size:45 final size:42
Alignment explanation
Indices: 633171--633268 Score: 115
Period size: 45 Copynumber: 2.2 Consensus size: 42
633161 AGGATAAAAG
* *
633171 AAAAAGGAAAATAAATTGCGTCCTACTCTTTGAGAACTAGAAGGGA
1 AAAAAGG-AAATAAAGTGCATCCTACTCTTTGAGAAC-A-AA-GGA
* * *
633217 AAAAAGGAAATGAAGTGCATCCTGCTCTTTGAGGACAAAGGA
1 AAAAAGGAAATAAAGTGCATCCTACTCTTTGAGAACAAAGGA
633259 AAAAAGGAAA
1 AAAAAGGAAA
633269 AGGCATCTTG
Statistics
Matches: 47, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
42 13 0.28
43 2 0.04
44 1 0.02
45 24 0.51
46 7 0.15
ACGTcount: A:0.46, C:0.12, G:0.23, T:0.18
Consensus pattern (42 bp):
AAAAAGGAAATAAAGTGCATCCTACTCTTTGAGAACAAAGGA
Found at i:633370 original size:61 final size:61
Alignment explanation
Indices: 633308--633542 Score: 262
Period size: 61 Copynumber: 3.9 Consensus size: 61
633298 AAAGGAAAAG
* *
633308 GCATCCTACTCTTTGAGGACTGAAAAGTGCCACCAACTCGTGTGGGCCTTGAAAAGA-AAA
1 GCATCCTACTCTTTGAGGACTGAAAAGTGCCACCAACTCGTGTAGGCTTTGAAAAGAGAAA
* * * ** *
633368 GGCGTCCTACTCTTTGAGGACTGGAAGGTGCCACCAACTTATGTAGGCTTTGCAAAGAGAAA
1 -GCATCCTACTCTTTGAGGACTGAAAAGTGCCACCAACTCGTGTAGGCTTTGAAAAGAGAAA
** * * * *
633430 GCATCCTAAACTTTGAGGACTG-GAAGTTGCCACCATCTCGAGT-GGTCTTTGAAAGGAGAAA
1 GCATCCTACTCTTTGAGGACTGAAAAG-TGCCACCAACTCGTGTAGG-CTTTGAAAAGAGAAA
* *
633491 GCATCCTACTCTTTAAGGACTAGAAAA-TGCCACCAACTTGTGTAGGCTTTGA
1 GCATCCTACTCTTTGAGGACT-GAAAAGTGCCACCAACTCGTGTAGGCTTTGA
633543 GAGGTGTCCT
Statistics
Matches: 142, Mismatches: 26, Indels: 12
0.79 0.14 0.07
Matches are distributed among these distances:
60 4 0.03
61 130 0.92
62 6 0.04
63 2 0.01
ACGTcount: A:0.29, C:0.22, G:0.24, T:0.25
Consensus pattern (61 bp):
GCATCCTACTCTTTGAGGACTGAAAAGTGCCACCAACTCGTGTAGGCTTTGAAAAGAGAAA
Found at i:633525 original size:122 final size:122
Alignment explanation
Indices: 633308--633541 Score: 310
Period size: 122 Copynumber: 1.9 Consensus size: 122
633298 AAAGGAAAAG
** * *
633308 GCATCCTACTCTTTGAGGACTGAAAAGTGCCACCAACTCGTGTGGGCCTTGAAAAGAAAAGGCGT
1 GCATCCTAAACTTTGAGGACTGAAAAGTGCCACCAACTCGAGTGGGCCTTGAAAAGAAAAGGCAT
* * **
633373 CCTACTCTTTGAGGACTGGAAGGTGCCACCAACTTATGTAGGCTTTGCAAAGAGAAA
66 CCTACTCTTTAAGGACTAGAAAATGCCACCAACTTATGTAGGCTTTGCAAAGAGAAA
* * * * *
633430 GCATCCTAAACTTTGAGGACTG-GAAGTTGCCACCATCTCGAGTGGTCTTTGAAAGGAGAAA-GC
1 GCATCCTAAACTTTGAGGACTGAAAAG-TGCCACCAACTCGAGTGGGCCTTGAAAAGA-AAAGGC
*
633493 ATCCTACTCTTTAAGGACTAGAAAATGCCACCAACTTGTGTAGGCTTTG
64 ATCCTACTCTTTAAGGACTAGAAAATGCCACCAACTTATGTAGGCTTTG
633542 AGAGGTGTCC
Statistics
Matches: 96, Mismatches: 14, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
121 3 0.03
122 90 0.94
123 3 0.03
ACGTcount: A:0.29, C:0.22, G:0.24, T:0.25
Consensus pattern (122 bp):
GCATCCTAAACTTTGAGGACTGAAAAGTGCCACCAACTCGAGTGGGCCTTGAAAAGAAAAGGCAT
CCTACTCTTTAAGGACTAGAAAATGCCACCAACTTATGTAGGCTTTGCAAAGAGAAA
Found at i:633578 original size:55 final size:55
Alignment explanation
Indices: 633493--633622 Score: 163
Period size: 55 Copynumber: 2.4 Consensus size: 55
633483 AGGAGAAAGC
* * * *
633493 ATCCTACTCTTTAAGGACTAGAAAATGCCACCAACTTGTGTAGGCTTTGAGAGGT
1 ATCCTACTCTTTGAGGACTAGAAAATGCCACCAACTTCTGTAGGCTTTAAAAGGT
* * * *
633548 GTCCTACTCTTTGAGGA-TTGAAAAATGCCACGAACTTCTGTGGGCTTTAAAAGGT
1 ATCCTACTCTTTGAGGACTAG-AAAATGCCACCAACTTCTGTAGGCTTTAAAAGGT
*
633603 ATCCTGCTCTTTGAGGACTA
1 ATCCTACTCTTTGAGGACTA
633623 AAACGTGAAA
Statistics
Matches: 62, Mismatches: 11, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
54 2 0.03
55 59 0.95
56 1 0.02
ACGTcount: A:0.27, C:0.20, G:0.22, T:0.31
Consensus pattern (55 bp):
ATCCTACTCTTTGAGGACTAGAAAATGCCACCAACTTCTGTAGGCTTTAAAAGGT
Found at i:633739 original size:55 final size:55
Alignment explanation
Indices: 633643--633880 Score: 320
Period size: 55 Copynumber: 4.3 Consensus size: 55
633633 GGAGAGAGCG
* * *
633643 TCCTACTCTTTGAGGACTGGGAAGTGCCACCAACCTT-TGTGGGCTTT-AAGAGGCA
1 TCCTGCTCTTTGAGGACTGGAAAATGCCACCAA-CTTGTGTGGGCTTTGAA-AGGCA
*
633698 TCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGCG
1 TCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGCA
** * * *
633753 TCCTGCTCTTTGAGGACTAAAAAATGCCACCAACTTGTGTTGGCTTTAAAAGGCG
1 TCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGCA
* *
633808 TCCTGCTCTTTGAGGACT-GAAAGTTGCCACCAACTTGTGTAGGCTTTGAAAGGCA
1 TCCTGCTCTTTGAGGACTGGAAA-ATGCCACCAACTTGTGTGGGCTTTGAAAGGCA
*
633863 TCCTGCTCTTTTAGGACT
1 TCCTGCTCTTTGAGGACT
633881 AAAGGGTGAA
Statistics
Matches: 166, Mismatches: 14, Indels: 6
0.89 0.08 0.03
Matches are distributed among these distances:
54 6 0.04
55 158 0.95
56 2 0.01
ACGTcount: A:0.23, C:0.23, G:0.25, T:0.29
Consensus pattern (55 bp):
TCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGCA
Found at i:633750 original size:149 final size:149
Alignment explanation
Indices: 633479--633774 Score: 414
Period size: 149 Copynumber: 2.0 Consensus size: 149
633469 GAGTGGTCTT
*
633479 TGAAAGGAGAAAGCATCCTACTCTTTAAGGACTAGAAAATGCCACCAACTTGTGTAGGCTTTGAG
1 TGAAAGGAGAAAGCATCCTACTCTTTAAGGACTAGAAAATGCCACCAACTTGTGTAGGCTTTAAG
** * * *
633544 AGGTGTCCTACTCTTTGAGGATTGAAAAATGCCACGAACTTCTGTGGGCTTTAAAAGGTATCCTG
66 AGGCATCCTACTCTTTGAGGACTGAAAAATGCCACCAACTTCTGTGGGCTTTAAAAGGCATCCTG
633609 CTCTTTGAGGACTAAAACG
131 CTCTTTGAGGACTAAAACG
* * * * * * *
633628 TGAAAGGAGAGAGCGTCCTACTCTTTGAGGACTGGGAAGTGCCACCAACCTT-TGTGGGCTTTAA
1 TGAAAGGAGAAAGCATCCTACTCTTTAAGGACTAGAAAATGCCACCAA-CTTGTGTAGGCTTTAA
* * * * *
633692 GAGGCATCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCT
65 GAGGCATCCTACTCTTTGAGGACTGAAAAATGCCACCAACTTCTGTGGGCTTTAAAAGGCATCCT
633757 GCTCTTTGAGGACTAAAA
130 GCTCTTTGAGGACTAAAA
633775 AATGCCACCA
Statistics
Matches: 128, Mismatches: 18, Indels: 2
0.86 0.12 0.01
Matches are distributed among these distances:
149 125 0.98
150 3 0.02
ACGTcount: A:0.27, C:0.20, G:0.26, T:0.27
Consensus pattern (149 bp):
TGAAAGGAGAAAGCATCCTACTCTTTAAGGACTAGAAAATGCCACCAACTTGTGTAGGCTTTAAG
AGGCATCCTACTCTTTGAGGACTGAAAAATGCCACCAACTTCTGTGGGCTTTAAAAGGCATCCTG
CTCTTTGAGGACTAAAACG
Found at i:634295 original size:13 final size:13
Alignment explanation
Indices: 634277--634301 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
634267 AATGCCTAAA
634277 TGTATCGATACAT
1 TGTATCGATACAT
634290 TGTATCGATACA
1 TGTATCGATACA
634302 ATGAACAATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:634996 original size:41 final size:40
Alignment explanation
Indices: 634905--635004 Score: 112
Period size: 41 Copynumber: 2.5 Consensus size: 40
634895 GTCCCACTTT
* * *
634905 TTGAGGACAAAGCAAAAGAGAATGAAATAGGTCTTGCTCC
1 TTGAGGACAAAGGAAAAAAGAATGAAATAGGTCCTGCTCC
* * *
634945 TTGAGGACAAAGGAAAAAAGAATGGGAA-GGTGTCCTGCTTC
1 TTGAGGACAAAGGAAAAAAGAAT-GAAATAG-GTCCTGCTCC
634986 TTGAGGACAAAGTGAAAAA
1 TTGAGGACAAAG-GAAAAA
635005 GAGTACGTCA
Statistics
Matches: 51, Mismatches: 6, Indels: 4
0.84 0.10 0.07
Matches are distributed among these distances:
40 22 0.43
41 23 0.45
42 6 0.12
ACGTcount: A:0.41, C:0.12, G:0.28, T:0.19
Consensus pattern (40 bp):
TTGAGGACAAAGGAAAAAAGAATGAAATAGGTCCTGCTCC
Found at i:635136 original size:45 final size:43
Alignment explanation
Indices: 635070--635169 Score: 119
Period size: 45 Copynumber: 2.3 Consensus size: 43
635060 TAGGATAAAA
*
635070 GAAAAAGGAAAATAAATTGCGTCATACTCTTTGAGAACTAGAAGG
1 GAAAAAGGAAAATAAAGTGCGTCATACTCTTTGAGAAC-A-AAGG
* * * * *
635115 GAAAAAGGGAAATGAAGTGCGTCCTGCTCTTTGAGGACAAAGG
1 GAAAAAGGAAAATAAAGTGCGTCATACTCTTTGAGAACAAAGG
*
635158 AAAAAAGGAAAA
1 GAAAAAGGAAAA
635170 GGCATCTTGC
Statistics
Matches: 47, Mismatches: 8, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
43 14 0.30
44 1 0.02
45 32 0.68
ACGTcount: A:0.45, C:0.11, G:0.26, T:0.18
Consensus pattern (43 bp):
GAAAAAGGAAAATAAAGTGCGTCATACTCTTTGAGAACAAAGG
Found at i:635349 original size:61 final size:60
Alignment explanation
Indices: 635208--635499 Score: 262
Period size: 61 Copynumber: 4.9 Consensus size: 60
635198 AAAGGAAAAG
* * *
635208 GCATCCTACTCTTTAAGGACT-GAAAAGTGCCACTAACTCT-TGTGGGCCTTGAAA-A-AAA
1 GCATCCTACTCTTTGAGGACTGGAAAA-TGCCACCAACT-TATGTGGGCTTTGAAAGAGAAA
* ** *
635266 GGGCGTCCTACTCTTTGAGGACTGGAAGGTGCCACCAACTTACGTGGGCTTTGCAAAGAGAAA
1 --GCATCCTACTCTTTGAGGACTGGAAAATGCCACCAACTTATGTGGGCTTTG-AAAGAGAAA
** * * *
635329 GCATCCTACTCTTTGAGGACTGGAAGTTGCCACCAACTCGA-GTGGTCTTTGAAAGGACAAA
1 GCATCCTACTCTTTGAGGACTGGAAAATGCCACCAACT-TATGTGGGCTTTGAAA-GAGAAA
* * * *
635390 GCATCCTGCTCTTTAAGGACTAGAAAATGCCACCAACTTGTGTGGGCTTTG--AGAG---
1 GCATCCTACTCTTTGAGGACTGGAAAATGCCACCAACTTATGTGGGCTTTGAAAGAGAAA
** * * *
635445 GTGTCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTAAAAG
1 GCATCCTACTCTTTGAGGACTGGAAAATGCCACCAACTTATGTGGGCTTTGAAAG
635500 GCATCCTGCT
Statistics
Matches: 196, Mismatches: 26, Indels: 23
0.80 0.11 0.09
Matches are distributed among these distances:
55 46 0.23
57 2 0.01
58 2 0.01
59 2 0.01
60 41 0.21
61 98 0.50
62 2 0.01
63 3 0.02
ACGTcount: A:0.27, C:0.22, G:0.25, T:0.26
Consensus pattern (60 bp):
GCATCCTACTCTTTGAGGACTGGAAAATGCCACCAACTTATGTGGGCTTTGAAAGAGAAA
Found at i:635477 original size:55 final size:55
Alignment explanation
Indices: 635332--635520 Score: 207
Period size: 55 Copynumber: 3.3 Consensus size: 55
635322 AGAGAAAGCA
* ** * * *
635332 TCCTACTCTTTGAGGACTGGAAGTTGCCACCAACTCGAGTGGTCTTTGAAAGGACAAAG
1 TCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGG-C---G
* * * *
635391 CATCCTGCTCTTTAAGGACTAGAAAATGCCACCAACTTGTGTGGGCTTTGAGAGGTG
1 --TCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGCG
* *
635448 TCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTAAAAGGCA
1 TCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGCG
*
635503 TCCTGCTCTTTGACGACT
1 TCCTGCTCTTTGAGGACT
635521 AAAAGGCGAA
Statistics
Matches: 111, Mismatches: 17, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
55 66 0.59
57 1 0.01
61 44 0.40
ACGTcount: A:0.24, C:0.23, G:0.25, T:0.28
Consensus pattern (55 bp):
TCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGCG
Found at i:635608 original size:94 final size:95
Alignment explanation
Indices: 635447--635623 Score: 248
Period size: 94 Copynumber: 1.9 Consensus size: 95
635437 TTTGAGAGGT
* * * * *
635447 GTCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTAAAAGGCATCCTGCTCT
1 GTCCTACTCTTTAAGGACTGGAAAATGCCACCAACCTCTGTGGGCTTTAAAAGGCATCCTCCTCT
635512 TTGACGACT-AAAAGGCGAAAGGAGAGAGC
66 TTGACGACTGAAAAGGCGAAAGGAGAGAGC
* * **
635541 GTCCTACTCTTTAAGGACTGGGAAGTGCCACCAACCTCTGTGGGCTTTAAGTGGCATCCTCCTCT
1 GTCCTACTCTTTAAGGACTGGAAAATGCCACCAACCTCTGTGGGCTTTAAAAGGCATCCTCCTCT
*
635606 TTGAGGACTGGAAAAGGC
66 TTGACGACT-GAAAAGGC
635624 CACCAACTTG
Statistics
Matches: 71, Mismatches: 10, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
94 64 0.90
96 7 0.10
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (95 bp):
GTCCTACTCTTTAAGGACTGGAAAATGCCACCAACCTCTGTGGGCTTTAAAAGGCATCCTCCTCT
TTGACGACTGAAAAGGCGAAAGGAGAGAGC
Found at i:635638 original size:55 final size:56
Alignment explanation
Indices: 635542--635779 Score: 263
Period size: 55 Copynumber: 4.3 Consensus size: 56
635532 GGAGAGAGCG
* * * * *
635542 TCCTACTCTTTAAGGACTGG-GAAGTGCCACCAACCTCTGTGGGCTTT-AAGTGGCA
1 TCCTACTCTTTGAGGACTGGAAAAGTGCCACCAACTTGTGTGGGCTTTGAA-AGGCA
* *
635597 TCCTCCTCTTTGAGGACTGGAAAAG-GCCACCAACTTGTGTGGGCTATT-AAAGGCG
1 TCCTACTCTTTGAGGACTGGAAAAGTGCCACCAACTTGTGTGGGCT-TTGAAAGGCA
* * * * *
635652 TCCTGCTCTTTGAGGACT-AAAAAATGCCACCAACTTGTGTCGGCTTTGAAAGGCG
1 TCCTACTCTTTGAGGACTGGAAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCA
* *
635707 TCCTACTCTTTGAGGACT-GAAAGGTGCCACCAACTTGTGTAGGCTTTGAAAGGCA
1 TCCTACTCTTTGAGGACTGGAAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCA
* * *
635762 TCTTGCTCTTTTAGGACT
1 TCCTACTCTTTGAGGACT
635780 AAAGGGTGAA
Statistics
Matches: 159, Mismatches: 20, Indels: 8
0.85 0.11 0.04
Matches are distributed among these distances:
54 6 0.04
55 146 0.92
56 7 0.04
ACGTcount: A:0.23, C:0.24, G:0.25, T:0.29
Consensus pattern (56 bp):
TCCTACTCTTTGAGGACTGGAAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCA
Found at i:635649 original size:149 final size:149
Alignment explanation
Indices: 635379--635673 Score: 421
Period size: 149 Copynumber: 2.0 Consensus size: 149
635369 AGTGGTCTTT
* * * *
635379 GAAAGGACAAAGCATCCTGCTCTTTAAGGACTAGAAAATGCCACCAACTTGTGTGGGCTTTGAGA
1 GAAAGGACAAAGCATCCTACTCTTTAAGGACTAGAAAATGCCACCAACCTCTGTGGGCTTTAAGA
** * *
635444 GGTGTCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTAAAAGGCATCCTGC
66 GGCATCCTCCTCTTTGAGGACTGGAAAAGGCCACCAACTTGTGTGGGCTTTAAAAGGCATCCTGC
635509 TCTTTGACGACTAAAAGGC
131 TCTTTGACGACTAAAAGGC
* * * * * * *
635528 GAAAGGAGAGAGCGTCCTACTCTTTAAGGACTGGGAAGTGCCACCAACCTCTGTGGGCTTTAAGT
1 GAAAGGACAAAGCATCCTACTCTTTAAGGACTAGAAAATGCCACCAACCTCTGTGGGCTTTAAGA
*
635593 GGCATCCTCCTCTTTGAGGACTGGAAAAGGCCACCAACTTGTGTGGGCTATT-AAAGGCGTCCTG
66 GGCATCCTCCTCTTTGAGGACTGGAAAAGGCCACCAACTTGTGTGGGCT-TTAAAAGGCATCCTG
*
635657 CTCTTTGAGGACTAAAA
130 CTCTTTGACGACTAAAA
635674 AATGCCACCA
Statistics
Matches: 128, Mismatches: 17, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
149 126 0.98
150 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.25
Consensus pattern (149 bp):
GAAAGGACAAAGCATCCTACTCTTTAAGGACTAGAAAATGCCACCAACCTCTGTGGGCTTTAAGA
GGCATCCTCCTCTTTGAGGACTGGAAAAGGCCACCAACTTGTGTGGGCTTTAAAAGGCATCCTGC
TCTTTGACGACTAAAAGGC
Found at i:635801 original size:259 final size:263
Alignment explanation
Indices: 635263--635849 Score: 740
Period size: 259 Copynumber: 2.2 Consensus size: 263
635253 GCCTTGAAAA
*
635263 AAAGGGCGTCCTACTCTTTGAGGACTGGAAGGTGCCACCAACTTAC-GTGGGCTTTGCAAAGAGA
1 AAAGAGCGTCCTACTCTTTGAGGACTGGAAGGTGCCACCAACTT-CTGTGGGCTTT---AAGAG-
*** *
635327 AAGCATCCTACTCTTTGAGGACTGGAAGTTGCCACCAACTCGAGTGGTCTTTGAAAGGACAAAGC
61 -AGCATCCTACTCTTTGAGGACTGGAAAAGGCCACCAACTCGAGTGGGCTTTGAAAGGAC--AG-
* * * * *
635392 ATCCTGCTCTTTAAGGACTAGAAAATGCCACCAACTTGTGTGGGCTTTGAGAGGTGTCCTGCTCT
122 ATCCTGCTCTTTAAGGACTAAAAAATGCCACCAACTTGTGTCGGCTTTGAAAGGCGTCCTACTCT
*
635457 TTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTAAAAGGCATCCTGCTCTTTGACGACTA
187 TTGAGGACTGGAAAATGCCACCAACTTGTGTAGGCTTTAAAAGGCATCCTGCTCTTTGACGACTA
635522 AAAGGCGAAAGG
252 AAAGGCGAAAGG
* * * *
635534 AGAGAGCGTCCTACTCTTTAAGGACTGGGAA-GTGCCACCAACCTCTGTGGGCTTTAAGTG-GCA
1 AAAGAGCGTCCTACTCTTTGAGGACT-GGAAGGTGCCACCAACTTCTGTGGGCTTTAAGAGAGCA
* * *
635597 TCCTCCTCTTTGAGGACTGGAAAAGGCCACCAACTTGTGTGGGCTATT-AAAGG-C-G-TCCTGC
65 TCCTACTCTTTGAGGACTGGAAAAGGCCACCAACTCGAGTGGGCT-TTGAAAGGACAGATCCTGC
*
635658 TCTTTGAGGACTAAAAAATGCCACCAACTTGTGTCGGCTTTGAAAGGCGTCCTACTCTTTGAGGA
129 TCTTTAAGGACTAAAAAATGCCACCAACTTGTGTCGGCTTTGAAAGGCGTCCTACTCTTTGAGGA
* * * * * * *
635723 CT-GAAAGGTGCCACCAACTTGTGTAGGCTTTGAAAGGCATCTTGCTCTTTTAGGACTAAAGGGT
194 CTGGAAA-ATGCCACCAACTTGTGTAGGCTTTAAAAGGCATCCTGCTCTTTGACGACTAAAAGGC
635787 GAAAGG
258 GAAAGG
* * * *
635793 AAAGAGCGTCCTGCTCTTTGAGGACTAGAAGGTGCCATCAACTTGTGTGGGCTTTAA
1 AAAGAGCGTCCTACTCTTTGAGGACTGGAAGGTGCCACCAACTTCTGTGGGCTTTAA
635850 AAGGAAAAGG
Statistics
Matches: 278, Mismatches: 33, Indels: 22
0.83 0.10 0.07
Matches are distributed among these distances:
258 7 0.03
259 168 0.60
261 1 0.00
264 1 0.00
265 46 0.17
266 2 0.01
268 4 0.01
270 1 0.00
271 44 0.16
272 4 0.01
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.26
Consensus pattern (263 bp):
AAAGAGCGTCCTACTCTTTGAGGACTGGAAGGTGCCACCAACTTCTGTGGGCTTTAAGAGAGCAT
CCTACTCTTTGAGGACTGGAAAAGGCCACCAACTCGAGTGGGCTTTGAAAGGACAGATCCTGCTC
TTTAAGGACTAAAAAATGCCACCAACTTGTGTCGGCTTTGAAAGGCGTCCTACTCTTTGAGGACT
GGAAAATGCCACCAACTTGTGTAGGCTTTAAAAGGCATCCTGCTCTTTGACGACTAAAAGGCGAA
AGG
Found at i:636197 original size:20 final size:19
Alignment explanation
Indices: 636172--636227 Score: 85
Period size: 20 Copynumber: 2.8 Consensus size: 19
636162 AAAAATGCCT
*
636172 AAATGTATCGATACATTGCA
1 AAATGTATCGATACAATG-A
636192 AAATGTATCGATACAATGA
1 AAATGTATCGATACAATGA
636211 ATAATGTATCGATACAA
1 A-AATGTATCGATACAA
636228 ATTGTTAAAA
Statistics
Matches: 34, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
19 2 0.06
20 32 0.94
ACGTcount: A:0.45, C:0.12, G:0.14, T:0.29
Consensus pattern (19 bp):
AAATGTATCGATACAATGA
Found at i:636901 original size:41 final size:40
Alignment explanation
Indices: 636810--636908 Score: 101
Period size: 41 Copynumber: 2.4 Consensus size: 40
636800 GTCCCACTTT
* * **
636810 TTGAGGACAAAGCAAAAGAGAATGAAATAGGTCTTGCTCC
1 TTGAGGACAAAGGAAAAGAGAAAGAAATAGGTCCGGCTCC
* * *
636850 TTGAAGACAAAGGAAAAGAGAAAAGGAA-AGTGTCCGGCTTC
1 TTGAGGACAAAGGAAAAGAG-AAAGAAATAG-GTCCGGCTCC
636891 TTGAGGACAAAGTGAAAA
1 TTGAGGACAAAG-GAAAA
636909 AGAGTACGTC
Statistics
Matches: 48, Mismatches: 8, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
40 20 0.42
41 23 0.48
42 5 0.10
ACGTcount: A:0.43, C:0.12, G:0.27, T:0.17
Consensus pattern (40 bp):
TTGAGGACAAAGGAAAAGAGAAAGAAATAGGTCCGGCTCC
Found at i:636976 original size:37 final size:35
Alignment explanation
Indices: 636929--636999 Score: 99
Period size: 35 Copynumber: 2.0 Consensus size: 35
636919 CTACTTTTCG
636929 AGGACAAAAGAAAAAAAGGAAAATGAAA-TGCGTCCTT
1 AGGACAAAAG--AAAAAGGAAAAT-AAATTGCGTCCTT
*
636966 AGGATAAAAGAAAAAGGAAAATAAATTGCGTCCT
1 AGGACAAAAGAAAAAGGAAAATAAATTGCGTCCT
637000 ACTCTTTGAG
Statistics
Matches: 32, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
34 3 0.09
35 20 0.62
37 9 0.28
ACGTcount: A:0.54, C:0.10, G:0.21, T:0.15
Consensus pattern (35 bp):
AGGACAAAAGAAAAAGGAAAATAAATTGCGTCCTT
Found at i:637044 original size:45 final size:42
Alignment explanation
Indices: 636976--637073 Score: 115
Period size: 45 Copynumber: 2.2 Consensus size: 42
636966 AGGATAAAAG
*
636976 AAAAAGGAAAATAAATTGCGTCCTACTCTTTGAGAACTAGAAGGCA
1 AAAAAGG-AAATAAAGTGCGTCCTACTCTTTGAGAAC-A-AA-GCA
* * * *
637022 AAAAAGGAAATGAAGTGTGTCCTGCTCTTTGAGGACAAAGCA
1 AAAAAGGAAATAAAGTGCGTCCTACTCTTTGAGAACAAAGCA
637064 AAAAAGGAAA
1 AAAAAGGAAA
637074 AGGCATCTTG
Statistics
Matches: 47, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
42 13 0.28
43 2 0.04
44 1 0.02
45 24 0.51
46 7 0.15
ACGTcount: A:0.45, C:0.13, G:0.22, T:0.19
Consensus pattern (42 bp):
AAAAAGGAAATAAAGTGCGTCCTACTCTTTGAGAACAAAGCA
Found at i:637181 original size:61 final size:61
Alignment explanation
Indices: 637101--637431 Score: 250
Period size: 61 Copynumber: 5.6 Consensus size: 61
637091 GGGCAAAGGA
* *
637101 GAAAAGGAAAAGGCATCCTACTCTTTGAGGACTGAAAAGTGCCACCAACTCGTGTAGGCCTT
1 GAAAA-GAAAAGGCATCCTACTCTTTGAGGACTGAAAAGTGCCACCAACTCGTGTGGGCTTT
** * * * * **
637163 GAAAAGAAAAGGTGTCCTACTCTTTGAGGATTGGAAGGTGCCACCAACTTGCATGGGCTTT
1 GAAAAGAAAAGGCATCCTACTCTTTGAGGACTGAAAAGTGCCACCAACTCGTGTGGGCTTT
* * * * *
637224 GCAAGGAGAAA-GCATCCTACTCTTTGAGGACTG-GAAGTTGCCACCAACTCGAGTGGTCTTT
1 GAAAAGA-AAAGGCATCCTACTCTTTGAGGACTGAAAAG-TGCCACCAACTCGTGTGGGCTTT
* * * *
637285 GAAAGGACAAA-GCATCCTGCTCTTTAAGGACTAGAAAA-TGCCACCAACTTGTGTGGGCTTT
1 GAAAAGA-AAAGGCATCCTACTCTTTGAGGACT-GAAAAGTGCCACCAACTCGTGTGGGCTTT
** **
637346 G---AG---AGGTGTCCGT-CTCTTTGAGGACTGGAAAA-TGCCACCAACTTATGTGGGCTTT
1 GAAAAGAAAAGGCATCC-TACTCTTTGAGGACT-GAAAAGTGCCACCAACTCGTGTGGGCTTT
*
637401 ----A-AAAA-GCATCCTGCTCTTTGAGGACT-AAAAG
1 GAAAAGAAAAGGCATCCTACTCTTTGAGGACTGAAAAG
637432 GCGAAAGGAG
Statistics
Matches: 221, Mismatches: 37, Indels: 30
0.77 0.13 0.10
Matches are distributed among these distances:
53 4 0.02
54 3 0.01
55 60 0.27
56 2 0.01
58 1 0.00
60 2 0.01
61 138 0.62
62 9 0.04
63 2 0.01
ACGTcount: A:0.29, C:0.21, G:0.25, T:0.25
Consensus pattern (61 bp):
GAAAAGAAAAGGCATCCTACTCTTTGAGGACTGAAAAGTGCCACCAACTCGTGTGGGCTTT
Found at i:637327 original size:122 final size:122
Alignment explanation
Indices: 637104--637346 Score: 296
Period size: 122 Copynumber: 2.0 Consensus size: 122
637094 CAAAGGAGAA
*
637104 AAGGAAAAGGCATCCTACTCTTTGAGGACTGAAAAGTGCCACCAACTCGTGTAGGCCTTGAAAAG
1 AAGGAAAAGGCATCCTACTCTTTGAGGACTGAAAAGTGCCACCAACTCGAGTAGGCCTTGAAAAG
** * * * **
637169 AAAAGGTGTCCTACTCTTTGAGGATTGGAAGGTGCCACCAACTTGCATGGGCTTTGC
66 AAAAGGCATCCTACTCTTTAAGGACTAGAAAATGCCACCAACTTGCATGGGCTTTGC
* *
637226 AAGGAGAAA-GCATCCTACTCTTTGAGGACTG-GAAGTTGCCACCAACTCGAGT-GGTCTTTGAA
1 AAGGA-AAAGGCATCCTACTCTTTGAGGACTGAAAAG-TGCCACCAACTCGAGTAGG-CCTTGAA
* * **
637288 AGGACAAA-GCATCCTGCTCTTTAAGGACTAGAAAATGCCACCAACTTGTGTGGGCTTTG
63 AAGA-AAAGGCATCCTACTCTTTAAGGACTAGAAAATGCCACCAACTTGCATGGGCTTTG
637347 AGAGGTGTCC
Statistics
Matches: 103, Mismatches: 14, Indels: 8
0.82 0.11 0.06
Matches are distributed among these distances:
121 5 0.05
122 92 0.89
123 6 0.06
ACGTcount: A:0.29, C:0.21, G:0.26, T:0.24
Consensus pattern (122 bp):
AAGGAAAAGGCATCCTACTCTTTGAGGACTGAAAAGTGCCACCAACTCGAGTAGGCCTTGAAAAG
AAAAGGCATCCTACTCTTTAAGGACTAGAAAATGCCACCAACTTGCATGGGCTTTGC
Found at i:637418 original size:55 final size:55
Alignment explanation
Indices: 637232--637426 Score: 187
Period size: 55 Copynumber: 3.4 Consensus size: 55
637222 TTGCAAGGAG
* ** * *
637232 AAAGCATCCTACTCTTTGAGGACTGGAAGTTGCCACCAACTCGA-GTGGTCTTTGAAAGGA
1 AAAGCATCCTGCTCTTTGAGGACTGGAAAATGCCACCAACT-TATGTGGGCTTT---A--A
* * * *
637292 CAAAGCATCCTGCTCTTTAAGGACTAGAAAATGCCACCAACTTGTGTGGGCTTTGA
1 -AAAGCATCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTATGTGGGCTTTAA
* * **
637348 GAGGTGTCC-GTCTCTTTGAGGACTGGAAAATGCCACCAACTTATGTGGGCTTTAA
1 AAAGCATCCTG-CTCTTTGAGGACTGGAAAATGCCACCAACTTATGTGGGCTTTAA
637403 AAAGCATCCTGCTCTTTGAGGACT
1 AAAGCATCCTGCTCTTTGAGGACT
637427 AAAAGGCGAA
Statistics
Matches: 110, Mismatches: 21, Indels: 12
0.77 0.15 0.08
Matches are distributed among these distances:
54 1 0.01
55 63 0.57
56 2 0.02
61 44 0.40
ACGTcount: A:0.27, C:0.22, G:0.24, T:0.27
Consensus pattern (55 bp):
AAAGCATCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTATGTGGGCTTTAA
Found at i:637532 original size:55 final size:55
Alignment explanation
Indices: 637448--637685 Score: 246
Period size: 55 Copynumber: 4.3 Consensus size: 55
637438 GGAGAGAGCG
** * * * *
637448 TCCTACTCTTTCTGGACTGGGAAGTGCCACCAACCTCTGTGGGCTTT-AAGAGGCA
1 TCCTACTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAA-AGGCA
* * *
637503 TCCTACTCTTTAAGGACTGGAAAATGCCACCAACTTGTGTGGGATTTGAAAGGCG
1 TCCTACTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGCA
* ** ** *
637558 TCCTGCTCTTTGAGGACTAAAAAATGCCACCAACTTGTGTCAGCTTTGAAAGGCG
1 TCCTACTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGCA
* * * *
637613 TCCTACTCTTTGAGGACT-GAAAGGTGTCACCAACTTATGTAGGCTTTGAAAGGCA
1 TCCTACTCTTTGAGGACTGGAAA-ATGCCACCAACTTGTGTGGGCTTTGAAAGGCA
* * *
637668 TCTTGCTCTTTTAGGACT
1 TCCTACTCTTTGAGGACT
637686 AAAGGGTGAA
Statistics
Matches: 155, Mismatches: 26, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
54 3 0.02
55 150 0.97
56 2 0.01
ACGTcount: A:0.24, C:0.23, G:0.24, T:0.29
Consensus pattern (55 bp):
TCCTACTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGCA
Found at i:637644 original size:110 final size:110
Alignment explanation
Indices: 637472--637688 Score: 276
Period size: 110 Copynumber: 2.0 Consensus size: 110
637462 GACTGGGAAG
**
637472 TGCCACCAACCTCTGTGGGCTTTAAGAGGCATCCTACTCTTTAAGGACTGGAAAATGCCACCAAC
1 TGCCACCAACCTCTGTCAGCTTTAAGAGGCATCCTACTCTTTAAGGACTGGAAAATGCCACCAAC
* * *
637537 TTGTGTGGGATTTGAAAGGCGTCCTGCTCTTTGAGGACTAAAAAA
66 TTATGTAGGATTTGAAAGGCATCCTGCTCTTTGAGGACTAAAAAA
* * * * * *
637582 TGCCACCAACTTGTGTCAGCTTTGAA-AGGCGTCCTACTCTTTGAGGACT-GAAAGGTGTCACCA
1 TGCCACCAACCTCTGTCAGCTTT-AAGAGGCATCCTACTCTTTAAGGACTGGAAA-ATGCCACCA
* * *
637645 ACTTATGTAGGCTTTGAAAGGCATCTTGCTCTTTTAGGACTAAA
64 ACTTATGTAGGATTTGAAAGGCATCCTGCTCTTTGAGGACTAAA
637689 GGGTGAAAGG
Statistics
Matches: 91, Mismatches: 14, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
109 4 0.04
110 85 0.93
111 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.23, T:0.29
Consensus pattern (110 bp):
TGCCACCAACCTCTGTCAGCTTTAAGAGGCATCCTACTCTTTAAGGACTGGAAAATGCCACCAAC
TTATGTAGGATTTGAAAGGCATCCTGCTCTTTGAGGACTAAAAAA
Found at i:637707 original size:259 final size:262
Alignment explanation
Indices: 637235--637717 Score: 679
Period size: 259 Copynumber: 1.8 Consensus size: 262
637225 CAAGGAGAAA
* ** **
637235 GCATCCTACTCTTTGAGGACTGGAAGTTGCCACCAACTCGAGTGGTCTTTGAAAGGACAAAGCAT
1 GCATCCTACTCTTTAAGGACTGGAAAATGCCACCAACTCGAGTGGGATTTGAAAGGAC--AG-AT
* ** * *
637300 CCTGCTCTTTAAGGACTAGAAAATGCCACCAACTTGTGTGGGCTTTGAGAGGTGTCCGTCTCTTT
63 CCTGCTCTTTAAGGACTAAAAAATGCCACCAACTTGTGTCAGCTTTGAAAGGCGTCCGTCTCTTT
*
637365 GAGGACTGGAAAATGCCACCAACTTATGTGGGCTTTAAAAAGCATCCTGCTCTTTGAGGACTAAA
128 GAGGACTGGAAAATGCCACCAACTTATGTAGGCTTTAAAAAGCATCCTGCTCTTTGAGGACTAAA
*
637430 AGGCGAAAGGAGAGAGCGTCCTACTCTTTCTGGACTGGGAAGTGCCACCAACCTCTGTGGGCTTT
193 AGGCGAAAGGAAAGAGCGTCCTACTCTTTCTGGACTGGGAAGTGCCACCAACCTCTGTGGGCTTT
637495 AAGAG
258 AAGAG
* *
637500 GCATCCTACTCTTTAAGGACTGGAAAATGCCACCAACTTGTGTGGGATTTGAAAGG-C-G-TCCT
1 GCATCCTACTCTTTAAGGACTGGAAAATGCCACCAACTCGAGTGGGATTTGAAAGGACAGATCCT
*
637562 GCTCTTTGAGGACTAAAAAATGCCACCAACTTGTGTCAGCTTTGAAAGGCGTCC-TACTCTTTGA
66 GCTCTTTAAGGACTAAAAAATGCCACCAACTTGTGTCAGCTTTGAAAGGCGTCCGT-CTCTTTGA
* * * * * * *
637626 GGACT-GAAAGGTGTCACCAACTTATGTAGGCTTTGAAAGGCATCTTGCTCTTTTAGGACTAAAG
130 GGACTGGAAA-ATGCCACCAACTTATGTAGGCTTTAAAAAGCATCCTGCTCTTTGAGGACTAAAA
*
637690 GGTGAAAGGAAAGAGCGTCCTACTCTTT
194 GGCGAAAGGAAAGAGCGTCCTACTCTTT
637718 GCGGACCAGA
Statistics
Matches: 193, Mismatches: 23, Indels: 10
0.85 0.10 0.04
Matches are distributed among these distances:
258 5 0.03
259 137 0.71
261 1 0.01
264 1 0.01
265 49 0.25
ACGTcount: A:0.27, C:0.22, G:0.25, T:0.27
Consensus pattern (262 bp):
GCATCCTACTCTTTAAGGACTGGAAAATGCCACCAACTCGAGTGGGATTTGAAAGGACAGATCCT
GCTCTTTAAGGACTAAAAAATGCCACCAACTTGTGTCAGCTTTGAAAGGCGTCCGTCTCTTTGAG
GACTGGAAAATGCCACCAACTTATGTAGGCTTTAAAAAGCATCCTGCTCTTTGAGGACTAAAAGG
CGAAAGGAAAGAGCGTCCTACTCTTTCTGGACTGGGAAGTGCCACCAACCTCTGTGGGCTTTAAG
AG
Found at i:638107 original size:20 final size:19
Alignment explanation
Indices: 638079--638134 Score: 76
Period size: 20 Copynumber: 2.8 Consensus size: 19
638069 AAAAATGCCT
* *
638079 AAATATATCGATACATTGCA
1 AAATGTATCGATACAATG-A
638099 AAATGTATCGATACAATGA
1 AAATGTATCGATACAATGA
638118 ACAATGTATCGATACAA
1 A-AATGTATCGATACAA
638135 ATTGTTAAAA
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
19 2 0.06
20 31 0.94
ACGTcount: A:0.46, C:0.14, G:0.12, T:0.27
Consensus pattern (19 bp):
AAATGTATCGATACAATGA
Found at i:638896 original size:42 final size:40
Alignment explanation
Indices: 638846--639011 Score: 133
Period size: 42 Copynumber: 4.0 Consensus size: 40
638836 GACAAAGGAA
638846 AAAAGGAAAACGAAATGCATCCTGCTCTTTGAGGATAAAAG
1 AAAAGGAAAA-GAAATGCATCCTGCTCTTTGAGGATAAAAG
* **
638887 AAATAGGAAAATAAAGTGCATATTGCTCTTTGAGGATAAAAGGG
1 AAA-AGGAAAAGAAA-TGCATCCTGCTCTTTGAGGATAAAA--G
* * ** *
638931 AAAAGAAGAGAATGAAGTGTGTCCTGCTCTTTGAGGACAAAGGAG
1 AAAAG--GA-AAAGAAATGCATCCTGCTCTTTGAGGATAAA--AG
638976 AAAAGGAAAAG----GCATCCTGCTCTTTGAGGACTAAAA
1 AAAAGGAAAAGAAATGCATCCTGCTCTTTGAGGA-TAAAA
639012 AGTGCCACCA
Statistics
Matches: 100, Mismatches: 15, Indels: 24
0.72 0.11 0.17
Matches are distributed among these distances:
37 1 0.01
38 17 0.17
39 3 0.03
41 6 0.06
42 33 0.33
43 4 0.04
44 4 0.04
45 27 0.27
46 4 0.04
47 1 0.01
ACGTcount: A:0.42, C:0.12, G:0.25, T:0.21
Consensus pattern (40 bp):
AAAAGGAAAAGAAATGCATCCTGCTCTTTGAGGATAAAAG
Found at i:639050 original size:61 final size:61
Alignment explanation
Indices: 638976--639314 Score: 384
Period size: 61 Copynumber: 5.6 Consensus size: 61
638966 GACAAAGGAG
*
638976 AAAAGGAAAAGGCATCCTGCTCTTTGAGGACTAAAAAGTGCCACCAACTCGTGTGGGCTTT
1 AAAAGGAAAAGGCATCCTGCTCTTTGAGGACTAAAAAGTGCCACCAACTTGTGTGGGCTTT
* ** * *
639037 GAAAA-GAAAAGGCATCCTGCTTTTTGAGGACTGGAAGGTGCCACCAATTTGTGTGGGCTTT
1 -AAAAGGAAAAGGCATCCTGCTCTTTGAGGACTAAAAAGTGCCACCAACTTGTGTGGGCTTT
* * * * * * * *
639098 GCAAA-GAGAAA-GCATCCTGCTCTTTAAGGACTAGAAGGTGCCAGCAACTCGAGTGGTCTTT
1 -AAAAGGA-AAAGGCATCCTGCTCTTTGAGGACTAAAAAGTGCCACCAACTTGTGTGGGCTTT
*
639159 AAAAGGAGAAA-GCATCCTGCTCTTTGAGGACTGGAAAA-TGCCACCAACTTGTGTGGGCTTT
1 AAAAGGA-AAAGGCATCCTGCTCTTTGAGGACT-AAAAAGTGCCACCAACTTGTGTGGGCTTT
* * * * *
639220 AAAAGGAAAAGGCGTCCTGCTCTTTGAGGACCAAAAAATGCTACCAACTTGTGTGGTCTTT
1 AAAAGGAAAAGGCATCCTGCTCTTTGAGGACTAAAAAGTGCCACCAACTTGTGTGGGCTTT
* * *
639281 AAAAGGAAAAGACGTCCTGCTCCTTG-GGACTAAA
1 AAAAGGAAAAGGCATCCTGCTCTTTGAGGACTAAA
639315 GGGCGAAAGG
Statistics
Matches: 240, Mismatches: 32, Indels: 12
0.85 0.11 0.04
Matches are distributed among these distances:
60 17 0.07
61 214 0.89
62 9 0.04
ACGTcount: A:0.30, C:0.20, G:0.26, T:0.24
Consensus pattern (61 bp):
AAAAGGAAAAGGCATCCTGCTCTTTGAGGACTAAAAAGTGCCACCAACTTGTGTGGGCTTT
Found at i:639128 original size:122 final size:122
Alignment explanation
Indices: 638976--639311 Score: 430
Period size: 122 Copynumber: 2.8 Consensus size: 122
638966 GACAAAGGAG
*
638976 AAAAGGAAAAGGCATCCTGCTCTTTGAGGACTAAAAAGTGCCACCAACTCGTGTGGGCTTTGAAA
1 AAAAGGAAAAGGCATCCTGCTCTTTGAGGACTAAAAAGTGCCACCAACTCGTGTGGTCTTT-AAA
* ** *
639041 A-GAAAAGGCATCCTGCTTTTTGAGGACTGGAAGGTGCCACCAATTTGTGTGGGCTTT
65 AGGAAAAGGCATCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTT
* * * * * *
639098 GCAAA-GAGAAA-GCATCCTGCTCTTTAAGGACTAGAAGGTGCCAGCAACTCGAGTGGTCTTTAA
1 -AAAAGGA-AAAGGCATCCTGCTCTTTGAGGACTAAAAAGTGCCACCAACTCGTGTGGTCTTTAA
639161 AAGGAGAAA-GCATCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTT
64 AAGGA-AAAGGCATCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTT
* * * * *
639220 AAAAGGAAAAGGCGTCCTGCTCTTTGAGGACCAAAAAATGCTACCAACTTGTGTGGTCTTTAAAA
1 AAAAGGAAAAGGCATCCTGCTCTTTGAGGACTAAAAAGTGCCACCAACTCGTGTGGTCTTTAAAA
* * *
639285 GGAAAAGACGTCCTGCTCCTTG-GGACT
66 GGAAAAGGCATCCTGCTCTTTGAGGACT
639312 AAAGGGCGAA
Statistics
Matches: 182, Mismatches: 25, Indels: 14
0.82 0.11 0.06
Matches are distributed among these distances:
121 18 0.10
122 155 0.85
123 9 0.05
ACGTcount: A:0.30, C:0.20, G:0.26, T:0.24
Consensus pattern (122 bp):
AAAAGGAAAAGGCATCCTGCTCTTTGAGGACTAAAAAGTGCCACCAACTCGTGTGGTCTTTAAAA
GGAAAAGGCATCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTT
Found at i:639414 original size:55 final size:55
Alignment explanation
Indices: 639324--639518 Score: 266
Period size: 55 Copynumber: 3.5 Consensus size: 55
639314 AGGGCGAAAG
* * * *
639324 GAAAGAGCGTCCTGCTCTTTGAGGACTGAGAAATGCCACCAACTTGTGTGGGCTTC
1 GAAAG-GCATCCTGCTCTTTGAGGACTAAAAAATGCCACCAACTTGTGTGGGCTTT
* * *
639380 AAAAGGCGTCCGGCTCTTT-AGGGACTAAAAAATGCCACCAACTTGTGTGGGCTTT
1 GAAAGGCATCCTGCTCTTTGA-GGACTAAAAAATGCCACCAACTTGTGTGGGCTTT
* ** *
639435 GAAAGGCATCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGAGCTTT
1 GAAAGGCATCCTGCTCTTTGAGGACTAAAAAATGCCACCAACTTGTGTGGGCTTT
639490 GAAAGGCATCCTGCTCTTTGAGGACTAAA
1 GAAAGGCATCCTGCTCTTTGAGGACTAAA
639519 GGGTGAAAGG
Statistics
Matches: 124, Mismatches: 13, Indels: 5
0.87 0.09 0.04
Matches are distributed among these distances:
54 1 0.01
55 118 0.95
56 5 0.04
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.26
Consensus pattern (55 bp):
GAAAGGCATCCTGCTCTTTGAGGACTAAAAAATGCCACCAACTTGTGTGGGCTTT
Found at i:639624 original size:99 final size:94
Alignment explanation
Indices: 639443--639628 Score: 243
Period size: 99 Copynumber: 1.9 Consensus size: 94
639433 TTGAAAGGCA
*
639443 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGAGCTTTGAAAGGCATCCTGCTCTT
1 TCCTACTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGAGCTTTGAAAGGCATCCTGCTCTT
*
639508 TGAGGACTAAAGGGTGAAAGGATAGAGCG
66 TGAGGACTAAAGAGTGAAAGGATAGAGCG
* *
639537 TCCTACTCTTTGAGGACT-AGAAGGTGCCACCAAC-TGTGTGGGCTTTAAAAGGAAAAGGCGTCC
1 TCCTACTCTTTGAGGACTGA-AAGGTGCCACCAACTTGTGTGAGCTTT-----G-AAAGGCATCC
639600 TGCTCTTTGAGGACTGAAA-AGTGAAAGGA
59 TGCTCTTTGAGGACT-AAAGAGTGAAAGGA
639629 GAAAGTTTAG
Statistics
Matches: 80, Mismatches: 4, Indels: 11
0.84 0.04 0.12
Matches are distributed among these distances:
93 12 0.15
94 31 0.39
98 1 0.01
99 33 0.41
100 3 0.04
ACGTcount: A:0.27, C:0.19, G:0.29, T:0.25
Consensus pattern (94 bp):
TCCTACTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGAGCTTTGAAAGGCATCCTGCTCTT
TGAGGACTAAAGAGTGAAAGGATAGAGCG
Found at i:640623 original size:8 final size:8
Alignment explanation
Indices: 640594--640647 Score: 74
Period size: 8 Copynumber: 6.8 Consensus size: 8
640584 CTATTTTCTC
*
640594 TTTTTTCT
1 TTTTTTGT
640602 TTGTTTT-T
1 TT-TTTTGT
*
640610 TTTTTTGG
1 TTTTTTGT
640618 TTTTTTGT
1 TTTTTTGT
640626 TTTTTTGT
1 TTTTTTGT
640634 TTTTTTGT
1 TTTTTTGT
640642 TTTTTT
1 TTTTTT
640648 TTCTTAAATG
Statistics
Matches: 42, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
7 4 0.10
8 34 0.81
9 4 0.10
ACGTcount: A:0.00, C:0.02, G:0.11, T:0.87
Consensus pattern (8 bp):
TTTTTTGT
Found at i:641324 original size:19 final size:19
Alignment explanation
Indices: 641300--641394 Score: 97
Period size: 19 Copynumber: 5.6 Consensus size: 19
641290 AACAAGTAAC
641300 TGTATCGATACATAAGTGT
1 TGTATCGATACATAAGTGT
641319 TGTATCGATAC---A---T
1 TGTATCGATACATAAGTGT
641332 TGTATCGATACATAAGTGT
1 TGTATCGATACATAAGTGT
*
641351 TGTTTCGAT--AT-A---T
1 TGTATCGATACATAAGTGT
641364 TGTATCGATACATAAGTGT
1 TGTATCGATACATAAGTGT
641383 TGTATCGATACA
1 TGTATCGATACA
641395 ATGTATCGCT
Statistics
Matches: 62, Mismatches: 2, Indels: 24
0.70 0.02 0.27
Matches are distributed among these distances:
13 21 0.34
15 2 0.03
16 4 0.06
17 2 0.03
19 33 0.53
ACGTcount: A:0.31, C:0.12, G:0.19, T:0.39
Consensus pattern (19 bp):
TGTATCGATACATAAGTGT
Found at i:641336 original size:13 final size:13
Alignment explanation
Indices: 641318--641344 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
641308 TACATAAGTG
641318 TTGTATCGATACA
1 TTGTATCGATACA
641331 TTGTATCGATACA
1 TTGTATCGATACA
641344 T
1 T
641345 AAGTGTTGTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.30, C:0.15, G:0.15, T:0.41
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:641341 original size:32 final size:32
Alignment explanation
Indices: 641300--641402 Score: 179
Period size: 32 Copynumber: 3.2 Consensus size: 32
641290 AACAAGTAAC
641300 TGTATCGATACATAAGTGTTGTATCGATACAT
1 TGTATCGATACATAAGTGTTGTATCGATACAT
* *
641332 TGTATCGATACATAAGTGTTGTTTCGATATAT
1 TGTATCGATACATAAGTGTTGTATCGATACAT
*
641364 TGTATCGATACATAAGTGTTGTATCGATACAA
1 TGTATCGATACATAAGTGTTGTATCGATACAT
641396 TGTATCG
1 TGTATCG
641403 CTATGAAGCT
Statistics
Matches: 66, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
32 66 1.00
ACGTcount: A:0.30, C:0.12, G:0.19, T:0.39
Consensus pattern (32 bp):
TGTATCGATACATAAGTGTTGTATCGATACAT
Found at i:641465 original size:13 final size:13
Alignment explanation
Indices: 641447--641474 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
641437 ATTACTCAAA
641447 TGTATCGATACAT
1 TGTATCGATACAT
641460 TGTATCGATACAT
1 TGTATCGATACAT
641473 TG
1 TG
641475 ATCTTTGTAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.29, C:0.14, G:0.18, T:0.39
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:649768 original size:19 final size:21
Alignment explanation
Indices: 649722--649775 Score: 67
Period size: 21 Copynumber: 2.7 Consensus size: 21
649712 TTTCAACAAT
649722 TTGTATCGATACAAACAGTAA
1 TTGTATCGATACAAACAGTAA
* *
649743 ATGTATCGATACATA-AGT-A
1 TTGTATCGATACAAACAGTAA
*
649762 TTGTATCAATACAA
1 TTGTATCGATACAA
649776 TGTATCGCTA
Statistics
Matches: 28, Mismatches: 5, Indels: 2
0.80 0.14 0.06
Matches are distributed among these distances:
19 12 0.43
20 3 0.11
21 13 0.46
ACGTcount: A:0.43, C:0.13, G:0.13, T:0.31
Consensus pattern (21 bp):
TTGTATCGATACAAACAGTAA
Found at i:657077 original size:22 final size:23
Alignment explanation
Indices: 657049--657104 Score: 105
Period size: 22 Copynumber: 2.5 Consensus size: 23
657039 TGGACATGTT
657049 AAAAATGCATGAAACATAAT-AA
1 AAAAATGCATGAAACATAATAAA
657071 AAAAATGCATGAAACATAATAAA
1 AAAAATGCATGAAACATAATAAA
657094 AAAAATGCATG
1 AAAAATGCATG
657105 GTCAAAGGCT
Statistics
Matches: 33, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
22 20 0.61
23 13 0.39
ACGTcount: A:0.62, C:0.09, G:0.11, T:0.18
Consensus pattern (23 bp):
AAAAATGCATGAAACATAATAAA
Found at i:658059 original size:20 final size:20
Alignment explanation
Indices: 658013--658069 Score: 62
Period size: 20 Copynumber: 2.9 Consensus size: 20
658003 GTAAAAAGAT
658013 AAAATGTATCGATACATTCA
1 AAAATGTATCGATACATTCA
* * *
658033 TACATGTATCGATATA-TCGA
1 AAAATGTATCGATACATTC-A
*
658053 AAAATGTATCAATACAT
1 AAAATGTATCGATACAT
658070 CTAGGTAAAA
Statistics
Matches: 28, Mismatches: 7, Indels: 3
0.74 0.18 0.08
Matches are distributed among these distances:
19 2 0.07
20 26 0.93
ACGTcount: A:0.44, C:0.14, G:0.11, T:0.32
Consensus pattern (20 bp):
AAAATGTATCGATACATTCA
Found at i:658689 original size:34 final size:33
Alignment explanation
Indices: 658626--658689 Score: 83
Period size: 34 Copynumber: 1.9 Consensus size: 33
658616 TCTTTTTTTT
* **
658626 AAAAAATGTGCCACTAACTTGTGTAGGCTTCGA
1 AAAAAAAGTGCCACTAACACGTGTAGGCTTCGA
*
658659 AAAAAAAGTTGCCACTAACACGTGTGGGCTT
1 AAAAAAAG-TGCCACTAACACGTGTAGGCTT
658690 TGAATAGAGT
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
33 7 0.27
34 19 0.73
ACGTcount: A:0.34, C:0.19, G:0.22, T:0.25
Consensus pattern (33 bp):
AAAAAAAGTGCCACTAACACGTGTAGGCTTCGA
Found at i:658783 original size:28 final size:28
Alignment explanation
Indices: 658681--659954 Score: 1320
Period size: 28 Copynumber: 44.6 Consensus size: 28
658671 CACTAACACG
* ** *
658681 TGTGGGCTTTGAATAGAGTGTTACTAACT
1 TGTGGGCTTTGAA-AGGGTGCCACTGACT
*
658710 TGCGTGGGCTTTAAAAGGGTGCCACTGACCT
1 T--GTGGGCTTTGAAAGGGTGCCACTGA-CT
* *
658741 GCGTGGGCTTTGAAAGGATGCCACTGACT
1 -TGTGGGCTTTGAAAGGGTGCCACTGACT
*
658770 TGTGGGCTTTGAAAGAGTGCCACTGACT
1 TGTGGGCTTTGAAAGGGTGCCACTGACT
* *
658798 CGTGGGCTTTGAAAAAGGTGCCACTGACT
1 TGTGGGCTTTG-AAAGGGTGCCACTGACT
* *
658827 CGTGGGCTTTGAAAAGGTGCCACTGACT
1 TGTGGGCTTTGAAAGGGTGCCACTGACT
* *
658855 CGTGGGCTTTGAAAAGGTGCCACTGACT
1 TGTGGGCTTTGAAAGGGTGCCACTGACT
* * *
658883 TGCGTGGCCTTTAAAAGGGTGCCACTAACT
1 T--GTGGGCTTTGAAAGGGTGCCACTGACT
* *
658913 TGTGCGGGCTTTGAAAAGATGCCACTGACT
1 TGT--GGGCTTTGAAAGGGTGCCACTGACT
* *
658943 TGTGGGCTTTGAAAGAGTGCCACTAACT
1 TGTGGGCTTTGAAAGGGTGCCACTGACT
* *
658971 CGTGGGCTTTAAAAGGAGTGCCACTGACTT
1 TGTGGGCTTTGAAAGG-GTGCCACTGAC-T
*
659001 GTGTGGGCTTTGAAAGAGTGCCACTGACT
1 -TGTGGGCTTTGAAAGGGTGCCACTGACT
* * * * *
659030 TGTGAGCTTTAAAAGAGTGCCACTAAAT
1 TGTGGGCTTTGAAAGGGTGCCACTGACT
* * * * *
659058 TATGGGCTTCGCAAGGGTGCAACTAACT
1 TGTGGGCTTTGAAAGGGTGCCACTGACT
*
659086 TGTGTGCTTTGAAAGGGTGCCACTGACT
1 TGTGGGCTTTGAAAGGGTGCCACTGACT
* *
659114 TGTGGGCTCTAAAAGGAGTGCCACTGACTT
1 TGTGGGCTTTGAAAGG-GTGCCACTGAC-T
* *
659144 GTGTGGGCTTTGAAAGGGTGCTACTAACT
1 -TGTGGGCTTTGAAAGGGTGCCACTGACT
* * *
659173 TATGGGCTTTGAAAGAGTGCCACTGAAT
1 TGTGGGCTTTGAAAGGGTGCCACTGACT
* *
659201 TGTGGGCTTCGCAAGGGTGCCACTGACT
1 TGTGGGCTTTGAAAGGGTGCCACTGACT
** *
659229 TGTGGGCTTCAAAAGGGTGCCACTAACT
1 TGTGGGCTTTGAAAGGGTGCCACTGACT
* * *
659257 TGTGGGCTTTGAATGAGTGCCACTGAAT
1 TGTGGGCTTTGAAAGGGTGCCACTGACT
* * * *
659285 TATGGGCTTCGCAAGGGTGCCACTAACT
1 TGTGGGCTTTGAAAGGGTGCCACTGACT
* * *
659313 TGTGGCCTTTGAAAGAGTGCCACTAACT
1 TGTGGGCTTTGAAAGGGTGCCACTGACT
* * *
659341 CGTGGGTTTTGAAAAGGTGCCACTGACT
1 TGTGGGCTTTGAAAGGGTGCCACTGACT
* *
659369 CGTGGGCTTTGAAAAGGTGCCACTGACT
1 TGTGGGCTTTGAAAGGGTGCCACTGACT
* *
659397 TGCGTGGGCTTTAAAAGGAATGCCACTGACTT
1 T--GTGGGCTTTGAAAGG-GTGCCACTGAC-T
659429 GTGTGGGCTTTGAAAGGGTG-C-C--AC-
1 -TGTGGGCTTTGAAAGGGTGCCACTGACT
* * * *
659453 TGTGGGCTTTAAAAGAGTGCCACTAAAT
1 TGTGGGCTTTGAAAGGGTGCCACTGACT
* * * *
659481 TGCGCGCTTCGCAAGGGTGCCACTGACT
1 TGTGGGCTTTGAAAGGGTGCCACTGACT
**
659509 TGTGGGCTTCAAAAGGGTGCCACTGACT
1 TGTGGGCTTTGAAAGGGTGCCACTGACT
* * *
659537 TGTGGGCTCTAAAAGGGGTGCCCCTGACT
1 TGTGGGCTTTGAAA-GGGTGCCACTGACT
659566 GGTGTGGGCTTTGAAAGGGTGCCACTGACT
1 --TGTGGGCTTTGAAAGGGTGCCACTGACT
*
659596 TGTGGGCTTTGAAAGGGTGCCACTAACT
1 TGTGGGCTTTGAAAGGGTGCCACTGACT
** *
659624 TGTGGGCTTTGAAAGACTGCCACTGAAT
1 TGTGGGCTTTGAAAGGGTGCCACTGACT
* * *
659652 TGTGGGCTTCGCAAGGGTGCCACTAACT
1 TGTGGGCTTTGAAAGGGTGCCACTGACT
* * *
659680 TATGAAGGCTTCGAAAGGGTGCCACTAACT
1 TGTG--GGCTTTGAAAGGGTGCCACTGACT
*
659710 TGTGGGCTTTGAAAGGGTGCCACTAACT
1 TGTGGGCTTTGAAAGGGTGCCACTGACT
** *
659738 TGTGGGCTTTGAAAAAGTGCCACTGAAT
1 TGTGGGCTTTGAAAGGGTGCCACTGACT
* *
659766 TGTGGGCTTCGCAAGGGTGCCACTGACT
1 TGTGGGCTTTGAAAGGGTGCCACTGACT
*
659794 TGTGGGCTTCGAAAGGGTGCCACTCG-CT
1 TGTGGGCTTTGAAAGGGTGCCACT-GACT
*
659822 TGTGGGCTTTGAAATGGTGCCACTGACT
1 TGTGGGCTTTGAAAGGGTGCCACTGACT
* * *
659850 TGTGGGCTTTAAAAAGAGTGCCACTGATT
1 TGTGGGCTTT-GAAAGGGTGCCACTGACT
*
659879 TGTGGGCTTTGAAAAGAGTGTCCACT-ATCT
1 TGTGGGCTTTG-AAAGGGTG-CCACTGA-CT
659909 TGTGGGCTTTGAAAGGAGTGCCACTGACT
1 TGTGGGCTTTGAAAGG-GTGCCACTGACT
659938 TGTGGGCTTTGAAAGGG
1 TGTGGGCTTTGAAAGGG
659955 ATGAACATTC
Statistics
Matches: 1048, Mismatches: 159, Indels: 77
0.82 0.12 0.06
Matches are distributed among these distances:
23 17 0.02
24 1 0.00
25 1 0.00
26 2 0.00
27 2 0.00
28 644 0.61
29 127 0.12
30 176 0.17
31 76 0.07
32 1 0.00
33 1 0.00
ACGTcount: A:0.22, C:0.19, G:0.31, T:0.27
Consensus pattern (28 bp):
TGTGGGCTTTGAAAGGGTGCCACTGACT
Found at i:658985 original size:143 final size:140
Alignment explanation
Indices: 658713--659954 Score: 1333
Period size: 143 Copynumber: 8.7 Consensus size: 140
658703 ACTAACTTGC
* * * *
658713 GTGGGCTTTAAAAGGGTGCCACTGACCTGCGTGGGCTTTGAAAG-GATGCCACTGACTTGTGGGC
1 GTGGGCTTTGAAAGGGTGCCACTGA-CT-TGTGGGCTTTAAAAGAG-TGCCACTAACTTGTGGGC
* * * * *
658777 TTTGAAAGAGTGCCACTGACTCGTGGGCTTTGAAAAAGGTGCCACTGACTCGTGGGCTTTGAAAA
63 TTTGCAAGGGTGCCACTGACTTGTGGGCTTTG-AAAGGGTGCCACTGACTTGTGGGCTTT-AAAA
*
658842 GGTGCCACTGACT-C
126 GGTGCCACTGACTGT
* * *
658856 GTGGGCTTTGAAAAGGTGCCACTGACTTGCGTGGCCTTTAAAAGGGTGCCACTAACTTGTGCGGG
1 GTGGGCTTTGAAAGGGTGCCACTGACTT--GTGGGCTTTAAAAGAGTGCCACTAACTTGT--GGG
* * * * * *
658921 CTTTGAAAAGATGCCACTGACTTGTGGGCTTTGAAAGAGTGCCACTAACTCGTGGGCTTTAAAAG
62 CTTTGCAAGGGTGCCACTGACTTGTGGGCTTTGAAAGGGTGCCACTGACTTGTGGGCTTTAAAA-
658986 GAGTGCCACTGACTTGT
126 G-GTGCCACTGAC-TGT
* * * * *
659003 GTGGGCTTTGAAAGAGTGCCACTGACTTGTGAGCTTTAAAAGAGTGCCACTAAATTATGGGCTTC
1 GTGGGCTTTGAAAGGGTGCCACTGACTTGTGGGCTTTAAAAGAGTGCCACTAACTTGTGGGCTTT
* * * *
659068 GCAAGGGTGCAACTAACTTGTGTGCTTTGAAAGGGTGCCACTGACTTGTGGGCTCTAAAAGGAGT
66 GCAAGGGTGCCACTGACTTGTGGGCTTTGAAAGGGTGCCACTGACTTGTGGGCTTTAAAA-G-GT
659133 GCCACTGACTTGT
129 GCCACTGAC-TGT
* * * *
659146 GTGGGCTTTGAAAGGGTGCTACTAACTTATGGGCTTTGAAAGAGTGCCACTGAA-TTGTGGGCTT
1 GTGGGCTTTGAAAGGGTGCCACTGACTTGTGGGCTTTAAAAGAGTGCCACT-AACTTGTGGGCTT
* ** * * *
659210 CGCAAGGGTGCCACTGACTTGTGGGCTTCAAAAGGGTGCCACTAACTTGTGGGCTTTGAATGAGT
65 TGCAAGGGTGCCACTGACTTGTGGGCTTTGAAAGGGTGCCACTGACTTGTGGGCTTTAAAAG-GT
*
659275 GCCACTGAAT-T
129 GCCACTGACTGT
* * * * * * * *
659286 ATGGGCTTCGCAAGGGTGCCACTAACTTGTGGCCTTTGAAAGAGTGCCACTAACTCGTGGGTTTT
1 GTGGGCTTTGAAAGGGTGCCACTGACTTGTGGGCTTTAAAAGAGTGCCACTAACTTGTGGGCTTT
* * * *
659351 GAAAAGGTGCCACTGACTCGTGGGCTTTGAAAAGGTGCCACTGACTTGCGTGGGCTTTAAAAGGA
66 GCAAGGGTGCCACTGACTTGTGGGCTTTGAAAGGGTGCCACTGACTT--GTGGGCTTTAAAAGG-
659416 ATGCCACTGACTTGT
128 -TGCCACTGAC-TGT
* * * *
659431 GTGGGCTTTGAAAGGGTG-C-C--AC-TGTGGGCTTTAAAAGAGTGCCACTAAATTGCGCGCTTC
1 GTGGGCTTTGAAAGGGTGCCACTGACTTGTGGGCTTTAAAAGAGTGCCACTAACTTGTGGGCTTT
** *
659491 GCAAGGGTGCCACTGACTTGTGGGCTTCAAAAGGGTGCCACTGACTTGTGGGCTCTAAAAGGGGT
66 GCAAGGGTGCCACTGACTTGTGGGCTTTGAAAGGGTGCCACTGACTTGTGGGCTTTAAAA--GGT
*
659556 GCCCCTGACTGGT
129 GCCACTGACT-GT
* *
659569 GTGGGCTTTGAAAGGGTGCCACTGACTTGTGGGCTTTGAAAGGGTGCCACTAACTTGTGGGCTTT
1 GTGGGCTTTGAAAGGGTGCCACTGACTTGTGGGCTTTAAAAGAGTGCCACTAACTTGTGGGCTTT
* ** * * * * * * *
659634 GAAAGACTGCCACTGAATTGTGGGCTTCGCAAGGGTGCCACTAACTTATGAAGGCTTCGAAAGGG
66 GCAAGGGTGCCACTGACTTGTGGGCTTTGAAAGGGTGCCACTGACTTGTG--GGCTT-TAAAAGG
*
659699 TGCCACTAACT-T
128 TGCCACTGACTGT
*
659711 GTGGGCTTTGAAAGGGTGCCACTAACTTGTGGGCTTTGAAAA-AGTGCCACTGAA-TTGTGGGCT
1 GTGGGCTTTGAAAGGGTGCCACTGACTTGTGGGCTTT-AAAAGAGTGCCACT-AACTTGTGGGCT
* * *
659774 TCGCAAGGGTGCCACTGACTTGTGGGCTTCGAAAGGGTGCCACTCG-CTTGTGGGCTTTGAAATG
64 TTGCAAGGGTGCCACTGACTTGTGGGCTTTGAAAGGGTGCCACT-GACTTGTGGGCTTT-AAAAG
659838 GTGCCACTGACT-T
127 GTGCCACTGACTGT
* * * *
659851 GTGGGCTTTAAAAAGAGTGCCACTGATTTGTGGGCTTTGAAAAGAGTGTCCACTATCTTGTGGGC
1 GTGGGCTTT-GAAAGGGTGCCACTGACTTGTGGGCTTT-AAAAGAGTG-CCACTAACTTGTGGGC
*
659916 TTTGAAAGGAGTGCCACTGACTTGTGGGCTTTGAAAGGG
63 TTTGCAAGG-GTGCCACTGACTTGTGGGCTTTGAAAGGG
659955 ATGAACATTC
Statistics
Matches: 934, Mismatches: 128, Indels: 73
0.82 0.11 0.06
Matches are distributed among these distances:
137 1 0.00
138 41 0.04
139 3 0.00
140 198 0.21
141 33 0.04
142 130 0.14
143 341 0.37
144 69 0.07
145 88 0.09
146 4 0.00
147 26 0.03
ACGTcount: A:0.22, C:0.19, G:0.31, T:0.27
Consensus pattern (140 bp):
GTGGGCTTTGAAAGGGTGCCACTGACTTGTGGGCTTTAAAAGAGTGCCACTAACTTGTGGGCTTT
GCAAGGGTGCCACTGACTTGTGGGCTTTGAAAGGGTGCCACTGACTTGTGGGCTTTAAAAGGTGC
CACTGACTGT
Found at i:659460 original size:23 final size:23
Alignment explanation
Indices: 659430--659476 Score: 76
Period size: 23 Copynumber: 2.0 Consensus size: 23
659420 CACTGACTTG
* *
659430 TGTGGGCTTTGAAAGGGTGCCAC
1 TGTGGGCTTTAAAAGAGTGCCAC
659453 TGTGGGCTTTAAAAGAGTGCCAC
1 TGTGGGCTTTAAAAGAGTGCCAC
659476 T
1 T
659477 AAATTGCGCG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.21, C:0.17, G:0.34, T:0.28
Consensus pattern (23 bp):
TGTGGGCTTTAAAAGAGTGCCAC
Found at i:661197 original size:1 final size:1
Alignment explanation
Indices: 661193--661244 Score: 50
Period size: 1 Copynumber: 52.0 Consensus size: 1
661183 ATTTTTCTTG
* * * ** *
661193 TTTTTTTTGTTTTTTTGTTTTGTTTTTTTTTTGCTTTTTTTTGTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
661245 GGGGGTGTAA
Statistics
Matches: 40, Mismatches: 11, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
1 40 1.00
ACGTcount: A:0.00, C:0.02, G:0.10, T:0.88
Consensus pattern (1 bp):
T
Found at i:661205 original size:17 final size:16
Alignment explanation
Indices: 661185--661241 Score: 71
Period size: 17 Copynumber: 3.4 Consensus size: 16
661175 TTTTTGCTAT
661185 TTTTCTTGTTTTTTTTG
1 TTTT-TTGTTTTTTTTG
661202 TTTTTTTGTTTTGTTTT-
1 -TTTTTTGTTTT-TTTTG
661219 TTTTTTGCTTTTTTTTG
1 TTTTTTG-TTTTTTTTG
661236 TTTTTT
1 TTTTTT
661242 TTTGGGGGTG
Statistics
Matches: 36, Mismatches: 0, Indels: 7
0.84 0.00 0.16
Matches are distributed among these distances:
16 11 0.31
17 17 0.47
18 8 0.22
ACGTcount: A:0.00, C:0.04, G:0.11, T:0.86
Consensus pattern (16 bp):
TTTTTTGTTTTTTTTG
Found at i:661243 original size:9 final size:9
Alignment explanation
Indices: 661184--661243 Score: 72
Period size: 8 Copynumber: 6.9 Consensus size: 9
661174 CTTTTTGCTA
*
661184 TTTTTCTTG
1 TTTTTTTTG
661193 TTTTTTTTG
1 TTTTTTTTG
661202 -TTTTTTTG
1 TTTTTTTTG
*
661210 -TTTTGTT-
1 TTTTTTTTG
661217 TTTTTTTTG
1 TTTTTTTTG
661226 CTTTTTTTTG
1 -TTTTTTTTG
661236 TTTTTTTT
1 TTTTTTTT
661244 TGGGGGTGTA
Statistics
Matches: 45, Mismatches: 3, Indels: 6
0.83 0.06 0.11
Matches are distributed among these distances:
8 20 0.44
9 16 0.36
10 9 0.20
ACGTcount: A:0.00, C:0.03, G:0.10, T:0.87
Consensus pattern (9 bp):
TTTTTTTTG
Found at i:661244 original size:21 final size:21
Alignment explanation
Indices: 661175--661244 Score: 88
Period size: 22 Copynumber: 3.2 Consensus size: 21
661165 CCCTTCTATC
661175 TTTTTGCTATTTTTCTTGTTTTT
1 TTTTTGCT-TTTTT-TTGTTTTT
*
661198 TTTGTT-TTTTTGTTTTGTTTTT
1 TTT-TTGCTTTT-TTTTGTTTTT
661220 TTTTTGCTTTTTTTTGTTTTT
1 TTTTTGCTTTTTTTTGTTTTT
661241 TTTT
1 TTTT
661245 GGGGGTGTAA
Statistics
Matches: 42, Mismatches: 2, Indels: 8
0.81 0.04 0.15
Matches are distributed among these distances:
21 16 0.38
22 18 0.43
23 6 0.14
24 2 0.05
ACGTcount: A:0.01, C:0.04, G:0.10, T:0.84
Consensus pattern (21 bp):
TTTTTGCTTTTTTTTGTTTTT
Found at i:670784 original size:28 final size:28
Alignment explanation
Indices: 670744--670799 Score: 112
Period size: 28 Copynumber: 2.0 Consensus size: 28
670734 CGGGCTTCAA
670744 GATATCCCCATCTTGGCGTTGGCGAGTT
1 GATATCCCCATCTTGGCGTTGGCGAGTT
670772 GATATCCCCATCTTGGCGTTGGCGAGTT
1 GATATCCCCATCTTGGCGTTGGCGAGTT
670800 TCTGACCATG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.14, C:0.25, G:0.29, T:0.32
Consensus pattern (28 bp):
GATATCCCCATCTTGGCGTTGGCGAGTT
Found at i:674356 original size:22 final size:23
Alignment explanation
Indices: 674328--674383 Score: 105
Period size: 22 Copynumber: 2.5 Consensus size: 23
674318 TGGACATGTT
674328 AAAAATGCATGAAACATAAT-AA
1 AAAAATGCATGAAACATAATAAA
674350 AAAAATGCATGAAACATAATAAA
1 AAAAATGCATGAAACATAATAAA
674373 AAAAATGCATG
1 AAAAATGCATG
674384 GTCAAAGGCT
Statistics
Matches: 33, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
22 20 0.61
23 13 0.39
ACGTcount: A:0.62, C:0.09, G:0.11, T:0.18
Consensus pattern (23 bp):
AAAAATGCATGAAACATAATAAA
Found at i:680352 original size:51 final size:51
Alignment explanation
Indices: 680281--680399 Score: 166
Period size: 51 Copynumber: 2.3 Consensus size: 51
680271 TAAAAATAAT
* * * *
680281 GGGGTTGGAGTATCCTCGATTGTGAAAAATCGATGCTTTAGAAATAAGGCC
1 GGGGTTGGAGTATCCCCGATTGTGAAAAATCAATACTTTAGAAATAAAGCC
* * * *
680332 GGGGTTGGAGTATCCCCGATTGTGAGAAATCAATATTTTGGAAATAAAGTC
1 GGGGTTGGAGTATCCCCGATTGTGAAAAATCAATACTTTAGAAATAAAGCC
680383 GGGGTTGGAGTATCCCC
1 GGGGTTGGAGTATCCCC
680400 TCAGAAATAA
Statistics
Matches: 60, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
51 60 1.00
ACGTcount: A:0.28, C:0.14, G:0.30, T:0.28
Consensus pattern (51 bp):
GGGGTTGGAGTATCCCCGATTGTGAAAAATCAATACTTTAGAAATAAAGCC
Found at i:680423 original size:28 final size:29
Alignment explanation
Indices: 680386--680455 Score: 90
Period size: 28 Copynumber: 2.5 Consensus size: 29
680376 TAAAGTCGGG
680386 GTTGGAGTATCCCCTCA-GAAATAACGAA
1 GTTGGAGTATCCCCTCATGAAATAACGAA
* * **
680414 GTTGGCGTAT-CCCTGATGAAATAACGGG
1 GTTGGAGTATCCCCTCATGAAATAACGAA
680442 GTTGGAGTATCCCC
1 GTTGGAGTATCCCC
680456 GATTATGAAC
Statistics
Matches: 35, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
27 5 0.14
28 27 0.77
29 3 0.09
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.24
Consensus pattern (29 bp):
GTTGGAGTATCCCCTCATGAAATAACGAA
Found at i:680452 original size:158 final size:158
Alignment explanation
Indices: 680274--680567 Score: 392
Period size: 158 Copynumber: 1.9 Consensus size: 158
680264 ATCCCCTTAA
* * * ** *
680274 AAATAATGGGGTTGGAGTATCCTCGATTGTGAAAAATCGATGCTTTAGAAATAAGGCCGGGGTTG
1 AAATAACGGGGTTGGAGTATCCCCGATTATGAAAAATCGATGCTTTAGAAATAAAACCGGAGTTG
* ** *
680339 GAGTATCCCCGATTGT-GAGAAATCAATATTTTGGAAATAAAGTCGGGGTTGGAGTATCCCCTCA
66 GAGTATCCCCGATTGTGGA-AAATCAATATTTTAGAAATAAAACCGGGGTTAGAGTATCCCCTCA
680403 GAAATAACGAAGTTGGCGTATCCCTGATG
130 GAAATAACGAAGTTGGCGTATCCCTGATG
* * * * *
680432 AAATAACGGGGTTGGAGTATCCCCGATTATGAACAATTGATGTTTTGGAAATAAAATCGGAGTTG
1 AAATAACGGGGTTGGAGTATCCCCGATTATGAAAAATCGATGCTTTAGAAATAAAACCGGAGTTG
* ** * *
680497 GAGTATCTCCGATTGTGGAAAATTGATGTTTTAGAAATAAAACCGGGGTTAGAGTATCCCCTCGG
66 GAGTATCCCCGATTGTGGAAAATCAATATTTTAGAAATAAAACCGGGGTTAGAGTATCCCCTCAG
680562 AAATAA
131 AAATAA
680568 TGGGGTTAGA
Statistics
Matches: 115, Mismatches: 20, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
158 113 0.98
159 2 0.02
ACGTcount: A:0.32, C:0.14, G:0.27, T:0.28
Consensus pattern (158 bp):
AAATAACGGGGTTGGAGTATCCCCGATTATGAAAAATCGATGCTTTAGAAATAAAACCGGAGTTG
GAGTATCCCCGATTGTGGAAAATCAATATTTTAGAAATAAAACCGGGGTTAGAGTATCCCCTCAG
AAATAACGAAGTTGGCGTATCCCTGATG
Found at i:680521 original size:51 final size:51
Alignment explanation
Indices: 680442--680557 Score: 162
Period size: 51 Copynumber: 2.3 Consensus size: 51
680432 AAATAACGGG
* *
680442 GTTGGAGTATCCCCGATTATGAACAATTGATGTTTTGGAAATAAAATCGGA
1 GTTGGAGTATCCCCGATTATGAACAATTGATGTTTTAGAAATAAAACCGGA
* * *
680493 GTTGGAGTATCTCCGATTGTGGAA-AATTGATGTTTTAGAAATAAAACCGGG
1 GTTGGAGTATCCCCGATTAT-GAACAATTGATGTTTTAGAAATAAAACCGGA
*
680544 GTTAGAGTATCCCC
1 GTTGGAGTATCCCC
680558 TCGGAAATAA
Statistics
Matches: 57, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
51 54 0.95
52 3 0.05
ACGTcount: A:0.31, C:0.13, G:0.25, T:0.31
Consensus pattern (51 bp):
GTTGGAGTATCCCCGATTATGAACAATTGATGTTTTAGAAATAAAACCGGA
Found at i:680604 original size:130 final size:129
Alignment explanation
Indices: 680431--680747 Score: 413
Period size: 130 Copynumber: 2.4 Consensus size: 129
680421 TATCCCTGAT
* *
680431 GAAATAACGGGGTTGGAGTATCCCCGATTA-TGAACAATTGATGTTTTGGAAATAAAATCGGAGT
1 GAAATAACGGGGTTGGAGTATCCCC-AATAGTGAA-AATTGATGTTTTGGAAATAAAACCGGAGT
*** * * *
680495 TGGAGTA-TCTCCGATTGTGGAAAATTGATGTTTTAGAAATAAAACCGGGGTTAGAGTATCCCCT
64 TGGAGTATTC-CCGATTACAGAAAATGGATGCTTTAGAAATAAAACCGAGGTTAGAGTATCCCCT
680559 CG
128 CG
* * * *
680561 GAAATAATGGGGTTAGAGTATCCCCAATAGTGGAAAATCGATGTTTTGGAAATAAAACCGGGGTT
1 GAAATAACGGGGTTGGAGTATCCCCAATAGT-GAAAATTGATGTTTTGGAAATAAAACCGGAGTT
680626 GGAGTATTCCCGATTACAGAAAATGGATGCTTTAGAAATAAAACCGAGGTTAGAGTATCCCCTCG
65 GGAGTATTCCCGATTACAGAAAATGGATGCTTTAGAAATAAAACCGAGGTTAGAGTATCCCCTCG
* * * * * *
680691 GAAATAACGGGGTTGGAGTATTCCCGATTGTAAAAAATTGGTATTTTGGAAATAAAA
1 GAAATAACGGGGTTGGAGTATCCCCAATAGT-GAAAATTGATGTTTTGGAAATAAAA
680748 ACATGAATGA
Statistics
Matches: 162, Mismatches: 22, Indels: 6
0.85 0.12 0.03
Matches are distributed among these distances:
129 3 0.02
130 154 0.95
131 5 0.03
ACGTcount: A:0.34, C:0.13, G:0.26, T:0.28
Consensus pattern (129 bp):
GAAATAACGGGGTTGGAGTATCCCCAATAGTGAAAATTGATGTTTTGGAAATAAAACCGGAGTTG
GAGTATTCCCGATTACAGAAAATGGATGCTTTAGAAATAAAACCGAGGTTAGAGTATCCCCTCG
Found at i:682661 original size:13 final size:13
Alignment explanation
Indices: 682643--682673 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
682633 ACATTTCTTC
682643 ATGTATCGATACA
1 ATGTATCGATACA
682656 ATGTATCGATACA
1 ATGTATCGATACA
*
682669 TTGTA
1 ATGTA
682674 CCATGTATCG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.35, C:0.13, G:0.16, T:0.35
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:682661 original size:33 final size:33
Alignment explanation
Indices: 682623--682689 Score: 102
Period size: 33 Copynumber: 2.0 Consensus size: 33
682613 GTTACAAGCT
682623 ATGTATCGATACATT-T-CTTCATGTATCGATACA
1 ATGTATCGATACATTGTAC--CATGTATCGATACA
682656 ATGTATCGATACATTGTACCATGTATCGATACA
1 ATGTATCGATACATTGTACCATGTATCGATACA
682689 A
1 A
682690 ATAGTGATAG
Statistics
Matches: 32, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
33 30 0.94
34 1 0.03
35 1 0.03
ACGTcount: A:0.33, C:0.18, G:0.13, T:0.36
Consensus pattern (33 bp):
ATGTATCGATACATTGTACCATGTATCGATACA
Found at i:682744 original size:21 final size:20
Alignment explanation
Indices: 682718--682773 Score: 78
Period size: 19 Copynumber: 2.8 Consensus size: 20
682708 CTGCCAGTTT
**
682718 CATGTATCGATACAATTTGTC
1 CATGTATCGATACAA-TTGAA
682739 CATGTATCGATACAA-TGAA
1 CATGTATCGATACAATTGAA
682758 CATGTATCGATACAAT
1 CATGTATCGATACAAT
682774 ATATCGATAC
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
19 17 0.53
21 15 0.47
ACGTcount: A:0.36, C:0.18, G:0.14, T:0.32
Consensus pattern (20 bp):
CATGTATCGATACAATTGAA
Found at i:682804 original size:33 final size:32
Alignment explanation
Indices: 682743--682804 Score: 88
Period size: 33 Copynumber: 1.9 Consensus size: 32
682733 TTTGTCCATG
*
682743 TATCGATACAATGAACATGTATCGATACAATA
1 TATCGATACAAAGAACATGTATCGATACAATA
* *
682775 TATCGATACAAAGCAGCATTTATCGATACA
1 TATCGATACAAAG-AACATGTATCGATACA
682805 TCTGGGTGTG
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
32 12 0.46
33 14 0.54
ACGTcount: A:0.42, C:0.18, G:0.13, T:0.27
Consensus pattern (32 bp):
TATCGATACAAAGAACATGTATCGATACAATA
Found at i:684752 original size:15 final size:16
Alignment explanation
Indices: 684714--684754 Score: 73
Period size: 16 Copynumber: 2.6 Consensus size: 16
684704 CATTGGACGA
684714 GTTAAAAATGAGTTTG
1 GTTAAAAATGAGTTTG
684730 GTTAAAAATGAGTTTG
1 GTTAAAAATGAGTTTG
*
684746 GTGAAAAAT
1 GTTAAAAAT
684755 CAGAAAGTTT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 24 1.00
ACGTcount: A:0.41, C:0.00, G:0.24, T:0.34
Consensus pattern (16 bp):
GTTAAAAATGAGTTTG
Found at i:689231 original size:20 final size:21
Alignment explanation
Indices: 689206--689244 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
689196 ATGCAAGTTT
*
689206 TTATTTTC-TTAGCTAATTCA
1 TTATTTTCATTAGCCAATTCA
689226 TTATTTTCATTAGCCAATT
1 TTATTTTCATTAGCCAATT
689245 TTTTAATATC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 8 0.47
21 9 0.53
ACGTcount: A:0.26, C:0.15, G:0.05, T:0.54
Consensus pattern (21 bp):
TTATTTTCATTAGCCAATTCA
Found at i:690159 original size:20 final size:19
Alignment explanation
Indices: 690134--690207 Score: 103
Period size: 20 Copynumber: 3.7 Consensus size: 19
690124 TTTACCCAGA
690134 TGTATCGATACATTTTGCAT
1 TGTATCGATACATTTT-CAT
*
690154 TGTATCGATACATTGCTCAT
1 TGTATCGATACATT-TTCAT
*
690174 TGTATCGATACATTTTACAA
1 TGTATCGATACATTTT-CAT
690194 TGTATCGATACATT
1 TGTATCGATACATT
690208 CAGGCATTTT
Statistics
Matches: 49, Mismatches: 3, Indels: 4
0.88 0.05 0.07
Matches are distributed among these distances:
19 1 0.02
20 47 0.96
21 1 0.02
ACGTcount: A:0.28, C:0.16, G:0.14, T:0.42
Consensus pattern (19 bp):
TGTATCGATACATTTTCAT
Found at i:692818 original size:79 final size:79
Alignment explanation
Indices: 692565--692863 Score: 401
Period size: 79 Copynumber: 3.8 Consensus size: 79
692555 TTTTTAATCA
* * *
692565 GGGATACTCCAACTCCGATTTTATCTTC-AAAACACCTACTTTTCACAATCGGGGATACTCCAAC
1 GGGATACTCCAACCCCGGTTTTAT-TTCTAAAACACCAACTTTTCACAATCGGGGATACTCCAAC
*
692629 CCCAGTTATTTTCAAG
65 CCCA-TTATTTTCGAG
* *
692645 GGGACACTCCAACCCCGGTTTTATTTCTAAAACATCAACTTTT--C-ATCGGGGATACTCCAACC
1 GGGATACTCCAACCCCGGTTTTATTTCTAAAACACCAACTTTTCACAATCGGGGATACTCCAACC
692707 CCATTATTTTCGAG
66 CCATTATTTTCGAG
** * *
692721 GGGATACTCCAACCCCGGTTTTATTTCTAAAACGTCAATTTTTCATAATCGGGGATACTCCAACC
1 GGGATACTCCAACCCCGGTTTTATTTCTAAAACACCAACTTTTCACAATCGGGGATACTCCAACC
* * *
692786 CTATTTTTTTTGAG
66 CCATTATTTTCGAG
* *
692800 GGGATACTCCAACCCCGGTTTTATTTCTAAAACACCAA-TTTTCCACAATCGAGGATATTCCAAC
1 GGGATACTCCAACCCCGGTTTTATTTCTAAAACACCAACTTTT-CACAATCGGGGATACTCCAAC
692864 TCTGATTTTA
Statistics
Matches: 196, Mismatches: 18, Indels: 11
0.87 0.08 0.05
Matches are distributed among these distances:
76 50 0.26
77 21 0.11
78 5 0.03
79 86 0.44
80 34 0.17
ACGTcount: A:0.28, C:0.27, G:0.14, T:0.31
Consensus pattern (79 bp):
GGGATACTCCAACCCCGGTTTTATTTCTAAAACACCAACTTTTCACAATCGGGGATACTCCAACC
CCATTATTTTCGAG
Found at i:692862 original size:51 final size:51
Alignment explanation
Indices: 692801--692918 Score: 164
Period size: 51 Copynumber: 2.3 Consensus size: 51
692791 TTTTTTGAGG
* * *
692801 GGATACTCCAACCCCGGTTTTATTTCTAAAACACCAATTTTCCACAATCGA
1 GGATATTCCAACCCCGATTTTATTTCCAAAACACCAATTTTCCACAATCGA
* * * * *
692852 GGATATTCCAACTCTGATTTTATTTCCAAAACACTAATTTTTCACAATCGG
1 GGATATTCCAACCCCGATTTTATTTCCAAAACACCAATTTTCCACAATCGA
692903 GGATATTCCAACCCCG
1 GGATATTCCAACCCCG
692919 TTATTTCATC
Statistics
Matches: 57, Mismatches: 10, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
51 57 1.00
ACGTcount: A:0.31, C:0.27, G:0.11, T:0.31
Consensus pattern (51 bp):
GGATATTCCAACCCCGATTTTATTTCCAAAACACCAATTTTCCACAATCGA
Found at i:692934 original size:28 final size:29
Alignment explanation
Indices: 692898--692979 Score: 123
Period size: 28 Copynumber: 2.9 Consensus size: 29
692888 ATTTTTCACA
*
692898 ATCGGGGATATTCCAACCCCGTTATTT-C
1 ATCGGGGATACTCCAACCCCGTTATTTCC
*
692926 ATCGGGGATACTCCAACCCAGTTATTTCC
1 ATCGGGGATACTCCAACCCCGTTATTTCC
*
692955 A-AGGGGATACTCCAACCCCGTTATT
1 ATCGGGGATACTCCAACCCCGTTATT
692980 ATCTCCAAAA
Statistics
Matches: 49, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
28 47 0.96
29 2 0.04
ACGTcount: A:0.24, C:0.29, G:0.18, T:0.28
Consensus pattern (29 bp):
ATCGGGGATACTCCAACCCCGTTATTTCC
Found at i:697245 original size:10 final size:10
Alignment explanation
Indices: 697230--697258 Score: 58
Period size: 10 Copynumber: 2.9 Consensus size: 10
697220 GCATTTTCAA
697230 ATGTAATCAT
1 ATGTAATCAT
697240 ATGTAATCAT
1 ATGTAATCAT
697250 ATGTAATCA
1 ATGTAATCA
697259 GGACATATTG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.41, C:0.10, G:0.10, T:0.38
Consensus pattern (10 bp):
ATGTAATCAT
Found at i:704797 original size:1 final size:1
Alignment explanation
Indices: 704793--704873 Score: 72
Period size: 1 Copynumber: 81.0 Consensus size: 1
704783 ATTCTTTTTC
* * * * * * * *
704793 AAAAAAAAAAACAAAAACAAAAAAAAACAAAAAACAAAAAAAAAACAAAAAAAACAAAACAAAGA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
* *
704858 AAAAAGAGAAAAAAAA
1 AAAAAAAAAAAAAAAA
704874 GTAGAATCTG
Statistics
Matches: 60, Mismatches: 20, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
1 60 1.00
ACGTcount: A:0.88, C:0.09, G:0.04, T:0.00
Consensus pattern (1 bp):
A
Found at i:704823 original size:28 final size:27
Alignment explanation
Indices: 704792--704873 Score: 103
Period size: 28 Copynumber: 3.0 Consensus size: 27
704782 CATTCTTTTT
704792 CAAAAAAAAAAACAAAAACAAAAAAAAA
1 CAAAAAAAAAAA-AAAAACAAAAAAAAA
704820 CAAAAAACAAAAAAAAAAC-AAAAAAAA
1 CAAAAAA-AAAAAAAAAACAAAAAAAAA
* * *
704847 CAAAACAAAGAAAAAAGAGAAAAAAAA
1 CAAAA-AAAAAAAAAAAACAAAAAAAA
704874 GTAGAATCTG
Statistics
Matches: 48, Mismatches: 3, Indels: 6
0.84 0.05 0.11
Matches are distributed among these distances:
27 21 0.44
28 22 0.46
29 5 0.10
ACGTcount: A:0.87, C:0.10, G:0.04, T:0.00
Consensus pattern (27 bp):
CAAAAAAAAAAAAAAAACAAAAAAAAA
Found at i:704824 original size:27 final size:26
Alignment explanation
Indices: 704794--704873 Score: 90
Period size: 27 Copynumber: 3.0 Consensus size: 26
704784 TTCTTTTTCA
704794 AAAAAAAAAACAAAAACAAAAAAAAAC
1 AAAAAAAAAA-AAAAACAAAAAAAAAC
704821 AAAAAACAAAAAAAAA-ACAAAAAAAAC
1 AAAAAA-AAAAAAAAACA-AAAAAAAAC
* * *
704848 AAAACAAAGAAAAAAGAGAAAAAAAA
1 AAAAAAAAAAAAAAACA-AAAAAAAA
704874 GTAGAATCTG
Statistics
Matches: 47, Mismatches: 3, Indels: 6
0.84 0.05 0.11
Matches are distributed among these distances:
26 9 0.19
27 34 0.72
28 4 0.09
ACGTcount: A:0.88, C:0.09, G:0.04, T:0.00
Consensus pattern (26 bp):
AAAAAAAAAAAAAAACAAAAAAAAAC
Found at i:704862 original size:17 final size:15
Alignment explanation
Indices: 704793--704862 Score: 88
Period size: 16 Copynumber: 4.5 Consensus size: 15
704783 ATTCTTTTTC
704793 AAAAAAAAAAACAAA
1 AAAAAAAAAAACAAA
704808 AACAAAAAAAAACAAA
1 AA-AAAAAAAAACAAA
704824 AAACAAAAAAAA-AACA
1 AAA-AAAAAAAACAA-A
704840 AAAAAAACAAAACAAA
1 AAAAAAA-AAAACAAA
*
704856 GAAAAAA
1 AAAAAAA
704863 GAGAAAAAAA
Statistics
Matches: 49, Mismatches: 1, Indels: 9
0.83 0.02 0.15
Matches are distributed among these distances:
15 9 0.18
16 38 0.78
17 2 0.04
ACGTcount: A:0.89, C:0.10, G:0.01, T:0.00
Consensus pattern (15 bp):
AAAAAAAAAAACAAA
Found at i:704874 original size:18 final size:17
Alignment explanation
Indices: 704795--704873 Score: 90
Period size: 18 Copynumber: 4.5 Consensus size: 17
704785 TCTTTTTCAA
704795 AAAAAAAAAC-AAAAAC
1 AAAAAAAAACAAAAAAC
704811 AAAAAAAAACAAAAAAC
1 AAAAAAAAACAAAAAAC
704828 AAAAAAAAAACAAAAAA-
1 -AAAAAAAAACAAAAAAC
* *
704845 AACAAAACAAAGAAAAAAG
1 AA-AAAA-AAACAAAAAAC
704864 AGAAAAAAAA
1 A-AAAAAAAA
704874 GTAGAATCTG
Statistics
Matches: 56, Mismatches: 1, Indels: 10
0.84 0.01 0.15
Matches are distributed among these distances:
16 12 0.21
17 10 0.18
18 28 0.50
19 5 0.09
20 1 0.02
ACGTcount: A:0.87, C:0.09, G:0.04, T:0.00
Consensus pattern (17 bp):
AAAAAAAAACAAAAAAC
Found at i:706130 original size:60 final size:58
Alignment explanation
Indices: 705934--706187 Score: 301
Period size: 55 Copynumber: 4.4 Consensus size: 58
705924 CTCCTTTCAC
* * *
705934 CCTTTAGTCCCCAAAGAGCAAGACGCCTTTC----AAAGCCCACACAAGTTGGTGGCA
1 CCTTCAGTCCTCAAAGAGCAGGACGCCTTTCTTTTAAAGCCCACACAAGTTGGTGGCA
*
705988 CCTTTCAGTCCTCAAAGAGCAGGACG-C---CTTTTAAAGCCCACACGAGTTGGTGGCA
1 CC-TTCAGTCCTCAAAGAGCAGGACGCCTTTCTTTTAAAGCCCACACAAGTTGGTGGCA
* * *
706043 CCCTCCAGTCCTCAAAGAGCAGGACGCCTTTTTCTTTTAAAGCCCACACAAGCTGATGGCA
1 -CCTTCAGTCCTCAAAGAGCAGGACGCC--TTTCTTTTAAAGCCCACACAAGTTGGTGGCA
706104 CCTTCAGTCCTCAAAGAGCAGGACGCCTTCTCCTTTTAAAGCCCACACAAGTTGGTGGCA
1 CCTTCAGTCCTCAAAGAGCAGGACGCCTT-T-CTTTTAAAGCCCACACAAGTTGGTGGCA
*
706164 -CTTCCTAGTCCTCAAAGAGTAGGA
1 CCTT-C-AGTCCTCAAAGAGCAGGA
706188 TGCTCTCTCC
Statistics
Matches: 172, Mismatches: 12, Indels: 25
0.82 0.06 0.12
Matches are distributed among these distances:
51 1 0.01
54 3 0.02
55 64 0.37
56 3 0.02
58 2 0.01
59 4 0.02
60 53 0.31
61 42 0.24
ACGTcount: A:0.27, C:0.31, G:0.20, T:0.22
Consensus pattern (58 bp):
CCTTCAGTCCTCAAAGAGCAGGACGCCTTTCTTTTAAAGCCCACACAAGTTGGTGGCA
Found at i:706304 original size:60 final size:60
Alignment explanation
Indices: 706229--706439 Score: 248
Period size: 60 Copynumber: 3.5 Consensus size: 60
706219 GAGCAGGACG
*
706229 CCTTTTAAAGCCCACACAAGCTGGTGGCACCTTCAGTCCTCAAAGAGCAGGACGCCTTCT
1 CCTTTTAAAGCCCACACAAGTTGGTGGCACCTTCAGTCCTCAAAGAGCAGGACGCCTTCT
* * * * * *
706289 CCTTTTAAAGTCCACACAAGTTGGTGGCA-CTTCTTGTCCTCAAAAAGTAGGATGCTTTCT
1 CCTTTTAAAGCCCACACAAGTTGGTGGCACCTTC-AGTCCTCAAAGAGCAGGACGCCTTCT
* ** *
706349 -CTTTGCAAAGCCCGTACAAGTTGGTGGCACCTTCCAGTCCTTAAAGAGCAGGACGCCTT-T
1 CCTTT-TAAAGCCCACACAAGTTGGTGGCACCTT-CAGTCCTCAAAGAGCAGGACGCCTTCT
* *
706409 CTTTTTCAAAGCCCACACGAGTTGGTGGCAC
1 CCTTTT-AAAGCCCACACAAGTTGGTGGCAC
706440 TTTTTTGTCC
Statistics
Matches: 123, Mismatches: 22, Indels: 11
0.79 0.14 0.07
Matches are distributed among these distances:
59 8 0.07
60 69 0.56
61 45 0.37
62 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.21, T:0.27
Consensus pattern (60 bp):
CCTTTTAAAGCCCACACAAGTTGGTGGCACCTTCAGTCCTCAAAGAGCAGGACGCCTTCT
Found at i:706361 original size:214 final size:215
Alignment explanation
Indices: 705986--706401 Score: 597
Period size: 214 Copynumber: 1.9 Consensus size: 215
705976 AAGTTGGTGG
* *
705986 CACCTTTCAGTCCTCAAAGAGCAGGACGCCTTTTAAAGCCCACACGAGTTGGTGGCACCCTCCAG
1 CACCTTTCAGTCCTCAAAGAGCAGGACGCCTTTTAAAGCCCACACAAGCTGGTGGCACCCTCCAG
* *
706051 TCCTCAAAGAGCAGGACGCCTTTTTCTTTTAAAGCCCACACAAGCTGATGGCACCTTCAGTCCTC
66 TCCTCAAAGAGCAGGACGCCTTCTCCTTTTAAAGCCCACACAAGCTGATGGCACCTTCAGTCCTC
* *
706116 AAAGAGCAGGACGCCTTCTCCTTTTAAAGCCCACACAAGTTGGTGGCA-CTTCCTAGTCCTCAAA
131 AAAAAGCAGGACGCCTTCTCCTTTCAAAGCCCACACAAGTTGGTGGCACCTTCC-AGTCCTCAAA
*
706180 GAGTAGGATGCTCTCTCCTTT
195 GAGCAGGATGCTCTCTCCTTT
** *
706201 CACCTTTTTGTCCTCAAAGAGCAGGACGCCTTTTAAAGCCCACACAAGCTGGTGGCA-CCTTCAG
1 CACCTTTCAGTCCTCAAAGAGCAGGACGCCTTTTAAAGCCCACACAAGCTGGTGGCACCCTCCAG
* * * *
706265 TCCTCAAAGAGCAGGACGCCTTCTCCTTTTAAAGTCCACACAAGTTGGTGGCA-CTTCTTGTCCT
66 TCCTCAAAGAGCAGGACGCCTTCTCCTTTTAAAGCCCACACAAGCTGATGGCACCTTC-AGTCCT
* * * ** *
706329 CAAAAAGTAGGATGCTTTCT-CTTTGCAAAGCCCGTACAAGTTGGTGGCACCTTCCAGTCCTTAA
130 CAAAAAGCAGGACGCCTTCTCCTTT-CAAAGCCCACACAAGTTGGTGGCACCTTCCAGTCCTCAA
706393 AGAGCAGGA
194 AGAGCAGGA
706402 CGCCTTTCTT
Statistics
Matches: 178, Mismatches: 20, Indels: 7
0.87 0.10 0.03
Matches are distributed among these distances:
213 8 0.04
214 112 0.63
215 58 0.33
ACGTcount: A:0.25, C:0.30, G:0.20, T:0.25
Consensus pattern (215 bp):
CACCTTTCAGTCCTCAAAGAGCAGGACGCCTTTTAAAGCCCACACAAGCTGGTGGCACCCTCCAG
TCCTCAAAGAGCAGGACGCCTTCTCCTTTTAAAGCCCACACAAGCTGATGGCACCTTCAGTCCTC
AAAAAGCAGGACGCCTTCTCCTTTCAAAGCCCACACAAGTTGGTGGCACCTTCCAGTCCTCAAAG
AGCAGGATGCTCTCTCCTTT
Found at i:706434 original size:61 final size:61
Alignment explanation
Indices: 706210--706477 Score: 259
Period size: 61 Copynumber: 4.5 Consensus size: 61
706200 TCACCTTTTT
*
706210 GTCCTCAAAGAGCAGGACG-C---C-TTTT-AAAGCCCACACAAGCTGGTGGCACCTT-CA
1 GTCCTCAAAGAGCAGGACGCCTTTCTTTTTCAAAGCCCACACAAGTTGGTGGCACCTTCCA
* * **
706264 GTCCTCAAAGAGCAGGACGCCTTCTCCTTTT-AAAGTCCACACAAGTTGGTGGCA-CTTCTT
1 GTCCTCAAAGAGCAGGACGCCTT-TCTTTTTCAAAGCCCACACAAGTTGGTGGCACCTTCCA
* * * * **
706324 GTCCTCAAAAAGTAGGATG-CTTTCTCTTTGCAAAGCCCGTACAAGTTGGTGGCACCTTCCA
1 GTCCTCAAAGAGCAGGACGCCTTTCT-TTTTCAAAGCCCACACAAGTTGGTGGCACCTTCCA
* * * ***
706385 GTCCTTAAAGAGCAGGACGCCTTTCTTTTTCAAAGCCCACACGAGTTGGTGGCACTTTTTT
1 GTCCTCAAAGAGCAGGACGCCTTTCTTTTTCAAAGCCCACACAAGTTGGTGGCACCTTCCA
* * *
706446 GTCCTTAAAGAGCAAGACGCGCTTTATTTTTC
1 GTCCTCAAAGAGCAGGACGC-CTTTCTTTTTC
706478 TCTCTCTTTT
Statistics
Matches: 174, Mismatches: 28, Indels: 16
0.80 0.13 0.07
Matches are distributed among these distances:
54 19 0.11
55 1 0.01
58 2 0.01
59 10 0.06
60 61 0.35
61 65 0.37
62 16 0.09
ACGTcount: A:0.24, C:0.27, G:0.21, T:0.28
Consensus pattern (61 bp):
GTCCTCAAAGAGCAGGACGCCTTTCTTTTTCAAAGCCCACACAAGTTGGTGGCACCTTCCA
Found at i:706500 original size:42 final size:42
Alignment explanation
Indices: 706442--706562 Score: 163
Period size: 42 Copynumber: 2.9 Consensus size: 42
706432 GGTGGCACTT
* * * *
706442 TTTTGTCCTTAAAGAGCAAGACGCGCTTTATTTTTCTCTCTC
1 TTTTGTCCTCAAAGAGCAGGACGCACTTTATTTTCCTCTCTC
* * *
706484 TTTTGTCCTCAAAGAGCAGGACACACTTTGTTTTCCTCTTTC
1 TTTTGTCCTCAAAGAGCAGGACGCACTTTATTTTCCTCTCTC
706526 TTTTGTCCTCAAAGAGCAGGACGCA-TTTCATTTTCCT
1 TTTTGTCCTCAAAGAGCAGGACGCACTTT-ATTTTCCT
706563 TTTTTCCTTT
Statistics
Matches: 69, Mismatches: 9, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
41 3 0.04
42 66 0.96
ACGTcount: A:0.20, C:0.25, G:0.15, T:0.40
Consensus pattern (42 bp):
TTTTGTCCTCAAAGAGCAGGACGCACTTTATTTTCCTCTCTC
Found at i:707306 original size:20 final size:19
Alignment explanation
Indices: 707281--707355 Score: 87
Period size: 20 Copynumber: 3.8 Consensus size: 19
707271 TTTACCCAGA
*
707281 TGTATCGATACATTTTGCAT
1 TGTATCGATACATTCT-CAT
707301 TGTATCGATACATTGCTCAT
1 TGTATCGATACATT-CTCAT
* * *
707321 TGTATCGATACATTGTAAAA
1 TGTATCGATACATTCT-CAT
707341 TGTATCGATACATTC
1 TGTATCGATACATTC
707356 AGGCATTTTT
Statistics
Matches: 48, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
19 1 0.02
20 46 0.96
21 1 0.02
ACGTcount: A:0.29, C:0.16, G:0.15, T:0.40
Consensus pattern (19 bp):
TGTATCGATACATTCTCAT
Found at i:709779 original size:52 final size:51
Alignment explanation
Indices: 709685--709829 Score: 184
Period size: 52 Copynumber: 2.8 Consensus size: 51
709675 TCCCGGTTTC
* *
709685 ATTTCCAAAACA-TCAATTTTTCTTAATCGGGGATACTCCAACTTTGATTTT
1 ATTTCCAAAACACTC-ATTTTTCATAATCGGGGATACTCCAACTTCGATTTT
* * *
709736 ATTTCTAAAACACTCATTTTTCCATAATCAGGGATATTCCAACTTCGATTTT
1 ATTTCCAAAACACTCATTTTT-CATAATCGGGGATACTCCAACTTCGATTTT
* * * *
709788 ATTTCCAAAACTCTGACTTTTCACAATCGGGGATACTCCAAC
1 ATTTCCAAAACACTCATTTTTCATAATCGGGGATACTCCAAC
709830 CTCGTTATTT
Statistics
Matches: 80, Mismatches: 12, Indels: 4
0.83 0.12 0.04
Matches are distributed among these distances:
51 35 0.44
52 45 0.56
ACGTcount: A:0.30, C:0.23, G:0.10, T:0.37
Consensus pattern (51 bp):
ATTTCCAAAACACTCATTTTTCATAATCGGGGATACTCCAACTTCGATTTT
Found at i:709972 original size:28 final size:28
Alignment explanation
Indices: 709892--709965 Score: 139
Period size: 28 Copynumber: 2.6 Consensus size: 28
709882 ACTTTTCATC
709892 GGGGATACTCCAACCCCGTTATTTTCGA
1 GGGGATACTCCAACCCCGTTATTTTCGA
*
709920 GGGGATACTCCAACCCCATTATTTTCGA
1 GGGGATACTCCAACCCCGTTATTTTCGA
709948 GGGGATACTCCAACCCCG
1 GGGGATACTCCAACCCCG
709966 GTTTTTTTTC
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 44 1.00
ACGTcount: A:0.23, C:0.31, G:0.22, T:0.24
Consensus pattern (28 bp):
GGGGATACTCCAACCCCGTTATTTTCGA
Found at i:710050 original size:51 final size:51
Alignment explanation
Indices: 709951--710067 Score: 128
Period size: 51 Copynumber: 2.3 Consensus size: 51
709941 TTTTCGAGGG
*
709951 GATACTCCAACCCCGGTTTTTTTTCTAAAACACCAATTCTCCACAATCGAA
1 GATACTCCAACCCCGATTTTTTTTCTAAAACACCAATTCTCCACAATCGAA
* * * * * * **
710002 GATATTCCAACTCCGATTTTATTTTC-AAAACACTAATTTTTCATAATCGGG
1 GATACTCCAACCCCGATTTT-TTTTCTAAAACACCAATTCTCCACAATCGAA
*
710053 GATACTCCAGCCCCG
1 GATACTCCAACCCCG
710068 TTATTTCATC
Statistics
Matches: 53, Mismatches: 12, Indels: 2
0.79 0.18 0.03
Matches are distributed among these distances:
51 48 0.91
52 5 0.09
ACGTcount: A:0.30, C:0.28, G:0.10, T:0.32
Consensus pattern (51 bp):
GATACTCCAACCCCGATTTTTTTTCTAAAACACCAATTCTCCACAATCGAA
Found at i:710083 original size:28 final size:29
Alignment explanation
Indices: 710047--710128 Score: 114
Period size: 28 Copynumber: 2.9 Consensus size: 29
710037 ATTTTTCATA
*
710047 ATCGGGGATACTCCAGCCCCGTTATTT-C
1 ATCGGGGATACTCCAACCCCGTTATTTCC
* *
710075 ATCGGGGATACTCTAACCCAGTTATTTCC
1 ATCGGGGATACTCCAACCCCGTTATTTCC
*
710104 A-AGGGGATACTCCAACCCCGTTATT
1 ATCGGGGATACTCCAACCCCGTTATT
710129 ATCTCCAAAA
Statistics
Matches: 47, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
28 45 0.96
29 2 0.04
ACGTcount: A:0.23, C:0.29, G:0.20, T:0.28
Consensus pattern (29 bp):
ATCGGGGATACTCCAACCCCGTTATTTCC
Found at i:712809 original size:13 final size:13
Alignment explanation
Indices: 712791--712849 Score: 60
Period size: 13 Copynumber: 5.1 Consensus size: 13
712781 CAATTTGTCT
712791 ATGTATCGATACA
1 ATGTATCGATACA
*
712804 ATGTATCAATAC-
1 ATGTATCGATACA
712816 A---AT-GA-AC-
1 ATGTATCGATACA
712823 ATGTATCGATACA
1 ATGTATCGATACA
712836 ATGTATCGATACA
1 ATGTATCGATACA
712849 A
1 A
712850 AGCAGCATGT
Statistics
Matches: 38, Mismatches: 2, Indels: 12
0.73 0.04 0.23
Matches are distributed among these distances:
7 3 0.08
8 1 0.03
9 2 0.05
10 2 0.05
11 2 0.05
12 3 0.08
13 25 0.66
ACGTcount: A:0.42, C:0.15, G:0.14, T:0.29
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:712832 original size:32 final size:33
Alignment explanation
Indices: 712791--712868 Score: 122
Period size: 32 Copynumber: 2.4 Consensus size: 33
712781 CAATTTGTCT
*
712791 ATGTATCGATACAATGTATCAATACAATG-AAC
1 ATGTATCGATACAATGTATCAATACAAAGCAAC
* *
712823 ATGTATCGATACAATGTATCGATACAAAGCAGC
1 ATGTATCGATACAATGTATCAATACAAAGCAAC
712856 ATGTATCGATACA
1 ATGTATCGATACA
712869 TCTGGGTGTG
Statistics
Matches: 42, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
32 27 0.64
33 15 0.36
ACGTcount: A:0.41, C:0.17, G:0.15, T:0.27
Consensus pattern (33 bp):
ATGTATCGATACAATGTATCAATACAAAGCAAC
Found at i:714428 original size:20 final size:20
Alignment explanation
Indices: 714403--714454 Score: 95
Period size: 20 Copynumber: 2.6 Consensus size: 20
714393 GTAAACCCAG
714403 AATGTATCGATACAATGAAC
1 AATGTATCGATACAATGAAC
*
714423 AATGTATGGATACAATGAAC
1 AATGTATCGATACAATGAAC
714443 AATGTATCGATA
1 AATGTATCGATA
714455 TAAATTGTGA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 30 1.00
ACGTcount: A:0.44, C:0.12, G:0.17, T:0.27
Consensus pattern (20 bp):
AATGTATCGATACAATGAAC
Found at i:723915 original size:42 final size:42
Alignment explanation
Indices: 723860--723978 Score: 184
Period size: 42 Copynumber: 2.8 Consensus size: 42
723850 TTCTTCTCTC
* *
723860 CTCCTCCTGTCATCCCTCCTCTCTCTATTATCTCTCATGTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCATGTCT
* *
723902 CTCCTCCTATCATCCCTCCTATCTCTACTATCTCTCCTGTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCATGTCT
* *
723944 CTCCTCCTATCATCCCTCCTCTCTCTTCTTTCTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCT
723979 TTGAGGGCTA
Statistics
Matches: 70, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
42 70 1.00
ACGTcount: A:0.09, C:0.45, G:0.03, T:0.43
Consensus pattern (42 bp):
CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCATGTCT
Found at i:726508 original size:33 final size:33
Alignment explanation
Indices: 726471--726544 Score: 91
Period size: 33 Copynumber: 2.2 Consensus size: 33
726461 CCTTCATACC
726471 CAAAAAAAA-T-AAAAAACACAA-AACACAAAAAAA
1 CAAAAAAAATTAAAAAAAC-CAAGAA-A-AAAAAAA
*
726504 CAAAAAAAATTAAAAAAACCAAGAAAAAAATAA
1 CAAAAAAAATTAAAAAAACCAAGAAAAAAAAAA
726537 CAAAAAAA
1 CAAAAAAA
726545 CAGAAAGGAG
Statistics
Matches: 37, Mismatches: 1, Indels: 6
0.84 0.02 0.14
Matches are distributed among these distances:
33 23 0.62
34 5 0.14
35 9 0.24
ACGTcount: A:0.81, C:0.12, G:0.01, T:0.05
Consensus pattern (33 bp):
CAAAAAAAATTAAAAAAACCAAGAAAAAAAAAA
Found at i:726546 original size:8 final size:8
Alignment explanation
Indices: 726471--726546 Score: 57
Period size: 8 Copynumber: 9.2 Consensus size: 8
726461 CCTTCATACC
726471 CAAAAAAA
1 CAAAAAAA
726479 -ATAAAAAA
1 CA-AAAAAA
*
726487 CACAAAACA
1 CA-AAAAAA
726496 CAAAAAAA
1 CAAAAAAA
726504 CAAAAAAAA
1 C-AAAAAAA
*
726513 TTAAAAAAA
1 -CAAAAAAA
* *
726522 CCAAGAAA
1 CAAAAAAA
*
726530 -AAAATAA
1 CAAAAAAA
726537 CAAAAAAA
1 CAAAAAAA
726545 CA
1 CA
726547 GAAAGGAGTC
Statistics
Matches: 52, Mismatches: 11, Indels: 10
0.71 0.15 0.14
Matches are distributed among these distances:
7 5 0.10
8 25 0.48
9 22 0.42
ACGTcount: A:0.80, C:0.13, G:0.01, T:0.05
Consensus pattern (8 bp):
CAAAAAAA
Found at i:727801 original size:28 final size:28
Alignment explanation
Indices: 727761--728620 Score: 1191
Period size: 28 Copynumber: 30.5 Consensus size: 28
727751 CGTTCATCTC
727761 TTCAAAGCCCACAAGTCAGTGGCACCCT
1 TTCAAAGCCCACAAGTCAGTGGCACCCT
* *
727789 TTCAAAGCCCACAAGTCAATGGCATCCT
1 TTCAAAGCCCACAAGTCAGTGGCACCCT
727817 TTCAAAGCCCACAAGTCAGTGGCACCCT
1 TTCAAAGCCCACAAGTCAGTGGCACCCT
727845 TTCAAAGCCCACAAGTCAGTGGCACCCT
1 TTCAAAGCCCACAAGTCAGTGGCACCCT
* *
727873 TTC-AAGCCCACAAGTCAGTGGCATCTT
1 TTCAAAGCCCACAAGTCAGTGGCACCCT
* * *
727900 TTCAAAGCCCACGAGTCGGTGGCAACTCTT
1 TTCAAAGCCCACAAGTCAGTGGC-AC-CCT
*
727930 TTCAAAGCCCACAAGTCAGTGGCATCCT
1 TTCAAAGCCCACAAGTCAGTGGCACCCT
* *
727958 TTCAAAGCCCATAAGTCAGTGGCATCCT
1 TTCAAAGCCCACAAGTCAGTGGCACCCT
*
727986 TTCAAAGCCCAGAAGTCAGTGGCACCCT
1 TTCAAAGCCCACAAGTCAGTGGCACCCT
*
728014 TTCAAAGCCCACAAGTCAGTGGCATCCT
1 TTCAAAGCCCACAAGTCAGTGGCACCCT
728042 TTCAAAGCCCACAAGTCAGTGGCACCCT
1 TTCAAAGCCCACAAGTCAGTGGCACCCT
**
728070 TTCAAAGCCCACAAGTCAGTGGCACATT
1 TTCAAAGCCCACAAGTCAGTGGCACCCT
* *
728098 TTCAAATCCCACAAGTCAGTGGCACTCTT
1 TTCAAAGCCCACAAGTCAGTGGCAC-CCT
* *
728127 TTCAAAGCCCACAAGTCAGTGGCATCTT
1 TTCAAAGCCCACAAGTCAGTGGCACCCT
* * *
728155 TTCAAAGCCCATAAGTCAATGGCATCCT
1 TTCAAAGCCCACAAGTCAGTGGCACCCT
*
728183 TTCAAAACCCACAAGTCAGTGGCACCCT
1 TTCAAAGCCCACAAGTCAGTGGCACCCT
* **
728211 TTCAAAGCCCACAAGTTAGTGGCACATT
1 TTCAAAGCCCACAAGTCAGTGGCACCCT
* * *
728239 TTCAAAGCCCACGAGTCGGTGGCAACTCTT
1 TTCAAAGCCCACAAGTCAGTGGC-AC-CCT
*
728269 TTCAAAGCCCACAAGTCAGTGGCATCCT
1 TTCAAAGCCCACAAGTCAGTGGCACCCT
* *
728297 TTCAAAGCCCATAAGTCAGTGGCATCCT
1 TTCAAAGCCCACAAGTCAGTGGCACCCT
* *
728325 TTCAAAGCCCAGAAGTCAGTGGCACCGT
1 TTCAAAGCCCACAAGTCAGTGGCACCCT
* *
728353 TTCAAAGCCCACAAGTCAGTGGCATCTT
1 TTCAAAGCCCACAAGTCAGTGGCACCCT
* *
728381 TTCAAAGCCCACAAGTCAATGGCATCCT
1 TTCAAAGCCCACAAGTCAGTGGCACCCT
*
728409 TTCAAAACCCACAAGTCAGTGGCACCCT
1 TTCAAAGCCCACAAGTCAGTGGCACCCT
* **
728437 TTCAAAGCCCACAAGTTAGTGGCACATT
1 TTCAAAGCCCACAAGTCAGTGGCACCCT
*
728465 TTCAAAGCCCACAAGTCAGTGGCACTCTT
1 TTCAAAGCCCACAAGTCAGTGGCAC-CCT
* * *
728494 TTCAAAGCCCACAAGTTAGTGGCATCTT
1 TTCAAAGCCCACAAGTCAGTGGCACCCT
* *
728522 TTTAAAGCCCATAAGTCAGTGGCACCCT
1 TTCAAAGCCCACAAGTCAGTGGCACCCT
* * *
728550 TTCACAGCCCACAAATCAGTGGTACCCT
1 TTCAAAGCCCACAAGTCAGTGGCACCCT
728578 TTCAAAGCCCACAAGTCAGTGGCATCCCCT
1 TTCAAAGCCCACAAGTCAGTGGCA--CCCT
728608 TTCAAAGCCCACA
1 TTCAAAGCCCACA
728621 CAAGTCTTTG
Statistics
Matches: 746, Mismatches: 77, Indels: 16
0.89 0.09 0.02
Matches are distributed among these distances:
27 25 0.03
28 602 0.81
29 55 0.07
30 64 0.09
ACGTcount: A:0.29, C:0.31, G:0.18, T:0.22
Consensus pattern (28 bp):
TTCAAAGCCCACAAGTCAGTGGCACCCT
Done.