Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold172
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 1975206
ACGTcount: A:0.26, C:0.15, G:0.15, T:0.26
Warning! 344189 characters in sequence are not A, C, G, or T
File 6 of 11
Found at i:728127 original size:197 final size:196
Alignment explanation
Indices: 727761--728620 Score: 1267
Period size: 197 Copynumber: 4.4 Consensus size: 196
727751 CGTTCATCTC
* * *
727761 TTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTCAATGGCATCCTTTCAAAGCC
1 TTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCC
727826 CACAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTCAGTGGCACCCTTTC-AAGCCCACAAGTCA
66 CACAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTCA
* *
727890 GTGGCATCTTTTCAAAGCCCACGAGTCGGTGGCAACTCTTTTCAAAGCCCACAAGTCAGTGGCAT
131 GTGGCATCTTTTCAAAGCCCACAAGTCAGTGGC-A-TCTTTTCAAAGCCCACAAGTCAGTGGCAT
727955 CCT
194 CCT
* *
727958 TTCAAAGCCCATAAGTCAGTGGCATCCTTTCAAAGCCCAGAAGTCAGTGGCACCCTTTCAAAGCC
1 TTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCC
*
728023 CACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTCA
66 CACAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTCA
*
728088 GTGGCA-CATTTTCAAATCCCACAAGTCAGTGGCACTCTTTTCAAAGCCCACAAGTCAGTGGCAT
131 GTGGCATC-TTTTCAAAGCCCACAAGTCAGTGGCA-TCTTTTCAAAGCCCACAAGTCAGTGGCAT
*
728152 CTT
194 CCT
* * *
728155 TTCAAAGCCCATAAGTCAATGGCATCCTTTCAAAACCCACAAGTCAGTGGCACCCTTTCAAAGCC
1 TTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCC
* ** * * *
728220 CACAAGTTAGTGGCACATTTTCAAAGCCCACGAGTCGGTGGCAACTCTTTTCAAAGCCCACAAGT
66 CACAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTCAGTGGC-AC-CCTTTCAAAGCCCACAAGT
* * * *
728285 CAGTGGCATCCTTTCAAAGCCCATAAGTCAGTGGCATCCTTTCAAAGCCCAGAAGTCAGTGGCA-
129 CAGTGGCATCTTTTCAAAGCCCACAAGTCAGTGGCATCTTTTCAAAGCCCACAAGTCAGTGGCAT
728349 CCGT
194 CC-T
* * * *
728353 TTCAAAGCCCACAAGTCAGTGGCATCTTTTCAAAGCCCACAAGTCAATGGCATCCTTTCAAAACC
1 TTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCC
* **
728418 CACAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTTAGTGGCACATTTTCAAAGCCCACAAGTCA
66 CACAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTCA
* * * *
728483 GTGGCACTCTTTTCAAAGCCCACAAGTTAGTGGCATCTTTTTAAAGCCCATAAGTCAGTGGCACC
131 GTGGCA-TCTTTTCAAAGCCCACAAGTCAGTGGCATCTTTTCAAAGCCCACAAGTCAGTGGCATC
728548 CT
195 CT
* * * *
728550 TTCACAGCCCACAAATCAGTGGTACCCTTTCAAAGCCCACAAGTCAGTGGCATCCCCTTTCAAAG
1 TTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCA--CCCTTTCAAAG
728615 CCCACA
64 CCCACA
728621 CAAGTCTTTG
Statistics
Matches: 599, Mismatches: 54, Indels: 18
0.89 0.08 0.03
Matches are distributed among these distances:
196 26 0.04
197 341 0.57
198 167 0.28
199 64 0.11
200 1 0.00
ACGTcount: A:0.29, C:0.31, G:0.18, T:0.22
Consensus pattern (196 bp):
TTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCC
CACAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTCA
GTGGCATCTTTTCAAAGCCCACAAGTCAGTGGCATCTTTTCAAAGCCCACAAGTCAGTGGCATCC
T
Found at i:729608 original size:20 final size:20
Alignment explanation
Indices: 729551--729608 Score: 82
Period size: 20 Copynumber: 2.9 Consensus size: 20
729541 AATGTATGGA
* *
729551 AATGTATCGATACATGT-ATG
1 AATGTATCGATACAT-TCTTC
729571 AATGTATCGATACATTCTTC
1 AATGTATCGATACATTCTTC
729591 AATGTATCGATACATTCT
1 AATGTATCGATACATTCT
729609 ATCTTTTTTT
Statistics
Matches: 35, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
19 1 0.03
20 34 0.97
ACGTcount: A:0.33, C:0.16, G:0.14, T:0.38
Consensus pattern (20 bp):
AATGTATCGATACATTCTTC
Found at i:733473 original size:19 final size:19
Alignment explanation
Indices: 733429--733484 Score: 85
Period size: 19 Copynumber: 2.9 Consensus size: 19
733419 CTGCCAGTTT
**
733429 CATGTATCGATACAATTGTG
1 CATGTATCGATACAA-TGAA
733449 CATGTATCGATACAATGAA
1 CATGTATCGATACAATGAA
733468 CATGTATCGATACAATG
1 CATGTATCGATACAATG
733485 TATCGATACA
Statistics
Matches: 34, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
19 19 0.56
20 15 0.44
ACGTcount: A:0.36, C:0.16, G:0.18, T:0.30
Consensus pattern (19 bp):
CATGTATCGATACAATGAA
Found at i:733487 original size:13 final size:13
Alignment explanation
Indices: 733469--733495 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
733459 TACAATGAAC
733469 ATGTATCGATACA
1 ATGTATCGATACA
733482 ATGTATCGATACA
1 ATGTATCGATACA
733495 A
1 A
733496 AGCATAATGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.41, C:0.15, G:0.15, T:0.30
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:733491 original size:32 final size:33
Alignment explanation
Indices: 733450--733512 Score: 94
Period size: 32 Copynumber: 1.9 Consensus size: 33
733440 ACAATTGTGC
*
733450 ATGTATCGATACAATG-A-ACATGTATCGATACA
1 ATGTATCGATACAAAGCATA-ATGTATCGATACA
733482 ATGTATCGATACAAAGCATAATGTATCGATA
1 ATGTATCGATACAAAGCATAATGTATCGATA
733513 TATCTAGATA
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
32 15 0.54
33 12 0.43
34 1 0.04
ACGTcount: A:0.41, C:0.14, G:0.16, T:0.29
Consensus pattern (33 bp):
ATGTATCGATACAAAGCATAATGTATCGATACA
Found at i:734089 original size:11 final size:10
Alignment explanation
Indices: 734059--734101 Score: 54
Period size: 11 Copynumber: 4.3 Consensus size: 10
734049 AGTTTATGGA
734059 TTTTGTTGAT
1 TTTTGTTGAT
734069 ATTTT-TT-AT
1 -TTTTGTTGAT
734078 TTTTGTTGTAT
1 TTTTGTTG-AT
734089 TTTTGTTGAT
1 TTTTGTTGAT
734099 TTT
1 TTT
734102 CATTATAATA
Statistics
Matches: 29, Mismatches: 0, Indels: 7
0.81 0.00 0.19
Matches are distributed among these distances:
8 4 0.14
9 4 0.14
10 7 0.24
11 14 0.48
ACGTcount: A:0.12, C:0.00, G:0.14, T:0.74
Consensus pattern (10 bp):
TTTTGTTGAT
Found at i:736901 original size:14 final size:13
Alignment explanation
Indices: 736882--736962 Score: 69
Period size: 14 Copynumber: 6.0 Consensus size: 13
736872 AATACTTTAA
736882 TATAATTATATATT
1 TATAATTA-ATATT
736896 TATAATTAATATT
1 TATAATTAATATT
736909 TATAAATTAATTATT
1 TAT-AATTAA-TATT
736924 TAT-ATTAA-ATT
1 TATAATTAATATT
*
736935 AAT-ATTAAAATATT
1 TATAATT--AATATT
*
736949 TATATATTTATATT
1 TATA-ATTAATATT
736963 CTATTTGTAA
Statistics
Matches: 57, Mismatches: 3, Indels: 14
0.77 0.04 0.19
Matches are distributed among these distances:
11 8 0.14
13 15 0.26
14 24 0.42
15 7 0.12
16 3 0.05
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (13 bp):
TATAATTAATATT
Found at i:736922 original size:32 final size:29
Alignment explanation
Indices: 736878--736960 Score: 96
Period size: 32 Copynumber: 2.8 Consensus size: 29
736868 TCCAAATACT
*
736878 TTAATATAATTATATATTTATAATTAATA
1 TTAAAATAATTATATATTTATAATTAATA
*
736907 TTTATAAATTAATTATTTATATTA-AATTAATA
1 -TTA-AAA-TAATTATATAT-TTATAATTAATA
*
736939 TTAAAATATTTATATATTTATA
1 TTAAAATAATTATATATTTATA
736961 TTCTATTTGT
Statistics
Matches: 45, Mismatches: 4, Indels: 9
0.78 0.07 0.16
Matches are distributed among these distances:
28 3 0.07
29 10 0.22
30 6 0.13
31 5 0.11
32 18 0.40
33 3 0.07
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (29 bp):
TTAAAATAATTATATATTTATAATTAATA
Found at i:736955 original size:8 final size:8
Alignment explanation
Indices: 736881--736961 Score: 55
Period size: 8 Copynumber: 10.5 Consensus size: 8
736871 AAATACTTTA
*
736881 ATATAATT
1 ATATATTT
736889 ATATATTT
1 ATATATTT
736897 ATA-A-TT
1 ATATATTT
736903 A-ATATTT
1 ATATATTT
* *
736910 ATAAATTA
1 ATATATTT
736918 AT-TATTT
1 ATATATTT
*
736925 ATATTAAATT
1 ATA-T-ATTT
*
736935 A-ATATTA
1 ATATATTT
*
736942 AAATATTT
1 ATATATTT
736950 ATATATTT
1 ATATATTT
736958 ATAT
1 ATAT
736962 TCTATTTGTA
Statistics
Matches: 56, Mismatches: 10, Indels: 14
0.70 0.12 0.17
Matches are distributed among these distances:
5 1 0.02
6 4 0.07
7 12 0.21
8 33 0.59
9 2 0.04
10 4 0.07
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (8 bp):
ATATATTT
Found at i:744900 original size:46 final size:46
Alignment explanation
Indices: 744833--744932 Score: 175
Period size: 46 Copynumber: 2.2 Consensus size: 46
744823 CAGAATTCTG
*
744833 GCAGCTGTTTCGAGCAGCTGGCTGGTCACCCTTTCCTCCTCTAACA
1 GCAGCTGTTTCGAGCAGCTGGCTGGTCACACTTTCCTCCTCTAACA
744879 GCAGCTGTTTC-ATGCAGCTGGCTGGTCACACTTTCCTCCTCTAACA
1 GCAGCTGTTTCGA-GCAGCTGGCTGGTCACACTTTCCTCCTCTAACA
744925 GCAGCTGT
1 GCAGCTGT
744933 AAACTTAGAT
Statistics
Matches: 52, Mismatches: 1, Indels: 2
0.95 0.02 0.04
Matches are distributed among these distances:
45 1 0.02
46 51 0.98
ACGTcount: A:0.16, C:0.33, G:0.22, T:0.29
Consensus pattern (46 bp):
GCAGCTGTTTCGAGCAGCTGGCTGGTCACACTTTCCTCCTCTAACA
Found at i:747804 original size:2 final size:2
Alignment explanation
Indices: 747797--747834 Score: 76
Period size: 2 Copynumber: 19.0 Consensus size: 2
747787 TCTGAAGTAT
747797 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
747835 ACACACACAC
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
TC
Found at i:747839 original size:2 final size:2
Alignment explanation
Indices: 747834--747859 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
747824 CTCTCTCTCT
747834 CA CA CA CA CA CA CA CA CA CA CA CA CA
1 CA CA CA CA CA CA CA CA CA CA CA CA CA
747860 TGCACGATTG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.50, G:0.00, T:0.00
Consensus pattern (2 bp):
CA
Found at i:755313 original size:389 final size:392
Alignment explanation
Indices: 754574--755362 Score: 1323
Period size: 389 Copynumber: 2.0 Consensus size: 392
754564 AGAACCATTC
* *
754574 TGAAAGCTTATCAAGTAACGAACCAAGAGGGGGGGTGAATTGGTTCTTTTCGAATTTTTGGGTTT
1 TGAAAACTTATCAAGTAACGAACCAAGAGGGGGGGTGAATTGGTTCTTTTCGAATTTTTCGG--T
754639 TGAACAAATTTGAAACAAAACAATTCGAAATGAAAAGAGATTAGGGAAGGAAAACTTGACACAAG
64 T------ATTTGAAACAAAACAATTCGAAATGAAAAGAGATTAGGGAAGGAAAACTTGACACAAG
* * * *
754704 ATATTTATAGAGGTTCGGTCCAAACACGGCACCTACGTCCTCTCTCCTCGACACTTCGTTGTCGA
123 AAATTTATAGAGGTTCGGTCCAAACACGACACCTACGTCCTCTCTCCTCGACACTTCCTCGTCGA
*
754769 GTGATTACCCAATTCACTAACCGAATTGATTACCTTGAAGGCAAAGGTATAACCTTACAACTCGT
188 GTGATTACCCAATTCACTAACCGAATTGAGTACCTTGAAGGCAAAGGTATAACCTTACAACTCGT
* * *
754834 ATCTTTTACGAGCTTAGATACCAACCTTACAATCTCTTTGCGAACTATACTACAAGTTTCAAAGA
253 ATCTTTTACGAGCTTAGATACCAACCTTACAATCTCTTTGCAAACTATACCACAAGTTCCAAAGA
*
754899 GATTCTCTCTCAAGGTTTGCCACAACCTTATGACAACAAAGATTTTTCTACAAACAAAGTTTGCC
318 GATTCTCTCTCAAGGTTTACCACAACCTTATGACAACAAAGATTTTTCTACAAACAAAGTTTGCC
754964 TCTAACTAGG
383 TCTAACTAGG
754974 TGAAAACTTATCAAGTAACGAACCAAGAGGGGGGGTGAATTGGTTCTTTTCGAA-TTTTCGG-T-
1 TGAAAACTTATCAAGTAACGAACCAAGAGGGGGGGTGAATTGGTTCTTTTCGAATTTTTCGGTTA
*
755036 TTTGAAACAACACAATTCGAAATGAAAAGAGATTAGGGAAGGAAAACTTGACACAAGAAATTTAT
66 TTTGAAACAAAACAATTCGAAATGAAAAGAGATTAGGGAAGGAAAACTTGACACAAGAAATTTAT
* * *
755101 AGAGGTTTGGTCCAAACACGACACCTACGTCTTCTCTCCTCGACATTTCCTCGTCGAGTGATTAC
131 AGAGGTTCGGTCCAAACACGACACCTACGTCCTCTCTCCTCGACACTTCCTCGTCGAGTGATTAC
*
755166 CCAATTCACTAACCGAATTGAGTACCTTTAAGGCAAAGGTATAACCTTACAACTCGTATCTTTTA
196 CCAATTCACTAACCGAATTGAGTACCTTGAAGGCAAAGGTATAACCTTACAACTCGTATCTTTTA
*
755231 CGGGCTTAGATACCAACCTTACAATCTCTTTGCAAACTATACCACAAGTTCCAAAGAGATTCTCT
261 CGAGCTTAGATACCAACCTTACAATCTCTTTGCAAACTATACCACAAGTTCCAAAGAGATTCTCT
*
755296 CTCAAGGTTTACCACAACCTTATGACAACAAGGATTTTTCTACAAACAAAGTTTGCCTCTAACTA
326 CTCAAGGTTTACCACAACCTTATGACAACAAAGATTTTTCTACAAACAAAGTTTGCCTCTAACTA
755361 GG
391 GG
755363 CTTGTGTTTG
Statistics
Matches: 371, Mismatches: 18, Indels: 11
0.93 0.05 0.03
Matches are distributed among these distances:
389 311 0.84
396 1 0.00
399 6 0.02
400 53 0.14
ACGTcount: A:0.33, C:0.21, G:0.17, T:0.28
Consensus pattern (392 bp):
TGAAAACTTATCAAGTAACGAACCAAGAGGGGGGGTGAATTGGTTCTTTTCGAATTTTTCGGTTA
TTTGAAACAAAACAATTCGAAATGAAAAGAGATTAGGGAAGGAAAACTTGACACAAGAAATTTAT
AGAGGTTCGGTCCAAACACGACACCTACGTCCTCTCTCCTCGACACTTCCTCGTCGAGTGATTAC
CCAATTCACTAACCGAATTGAGTACCTTGAAGGCAAAGGTATAACCTTACAACTCGTATCTTTTA
CGAGCTTAGATACCAACCTTACAATCTCTTTGCAAACTATACCACAAGTTCCAAAGAGATTCTCT
CTCAAGGTTTACCACAACCTTATGACAACAAAGATTTTTCTACAAACAAAGTTTGCCTCTAACTA
GG
Found at i:755754 original size:13 final size:13
Alignment explanation
Indices: 755736--755761 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
755726 CAATTTTTTG
755736 TGTATCGATACAT
1 TGTATCGATACAT
755749 TGTATCGATACAT
1 TGTATCGATACAT
755762 ACTTGGTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:755776 original size:32 final size:33
Alignment explanation
Indices: 755716--755779 Score: 94
Period size: 32 Copynumber: 2.0 Consensus size: 33
755706 TACAAGCCAA
** *
755716 TGTATCGATACAATTTTTTGTGTATCGATACAT
1 TGTATCGATACAATACTTGGTGTATCGATACAT
755749 TGTATCGATAC-ATACTTGGTGTATCGATACA
1 TGTATCGATACAATACTTGGTGTATCGATACA
755780 AGTTTGGCTA
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
32 17 0.61
33 11 0.39
ACGTcount: A:0.28, C:0.14, G:0.17, T:0.41
Consensus pattern (33 bp):
TGTATCGATACAATACTTGGTGTATCGATACAT
Found at i:758325 original size:13 final size:13
Alignment explanation
Indices: 758307--758344 Score: 67
Period size: 13 Copynumber: 2.9 Consensus size: 13
758297 ATAATCCCCC
758307 TGTATCGATACAG
1 TGTATCGATACAG
*
758320 TGTATCGATACAT
1 TGTATCGATACAG
758333 TGTATCGATACA
1 TGTATCGATACA
758345 AAGAAAAATG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 24 1.00
ACGTcount: A:0.32, C:0.16, G:0.18, T:0.34
Consensus pattern (13 bp):
TGTATCGATACAG
Found at i:762290 original size:21 final size:21
Alignment explanation
Indices: 762261--762305 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
762251 AAGTTTTTAT
*
762261 TTTTCTTAGCTAAC-TCATTA
1 TTTTCTTAGCCAACTTCATTA
*
762281 TTTTCATTAGCCAACTTCTTTA
1 TTTTC-TTAGCCAACTTCATTA
762303 TTT
1 TTT
762306 CAACTTGCAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 5 0.24
21 8 0.38
22 8 0.38
ACGTcount: A:0.22, C:0.20, G:0.04, T:0.53
Consensus pattern (21 bp):
TTTTCTTAGCCAACTTCATTA
Found at i:764528 original size:13 final size:13
Alignment explanation
Indices: 764510--764535 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
764500 CAATTTTTTG
764510 TGTATCGATACAT
1 TGTATCGATACAT
764523 TGTATCGATACAT
1 TGTATCGATACAT
764536 ACTTGGTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:764550 original size:32 final size:33
Alignment explanation
Indices: 764490--764553 Score: 94
Period size: 32 Copynumber: 2.0 Consensus size: 33
764480 TACAAGCCAA
** *
764490 TGTATCGATACAATTTTTTGTGTATCGATACAT
1 TGTATCGATACAATACTTGGTGTATCGATACAT
764523 TGTATCGATAC-ATACTTGGTGTATCGATACA
1 TGTATCGATACAATACTTGGTGTATCGATACA
764554 AGTTTGGCTA
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
32 17 0.61
33 11 0.39
ACGTcount: A:0.28, C:0.14, G:0.17, T:0.41
Consensus pattern (33 bp):
TGTATCGATACAATACTTGGTGTATCGATACAT
Found at i:765318 original size:13 final size:13
Alignment explanation
Indices: 765300--765325 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
765290 GAATTTTTTG
765300 TGTATCGATACAT
1 TGTATCGATACAT
765313 TGTATCGATACAT
1 TGTATCGATACAT
765326 ACTTGGTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:770382 original size:164 final size:166
Alignment explanation
Indices: 770183--770969 Score: 1065
Period size: 164 Copynumber: 4.8 Consensus size: 166
770173 TTTCTTCTTT
* * *
770183 GTAAATTTTGTTCGGAAGGATTTTTCTTAGTTTTTAATTTTTAAAATTTATCAAATATTATTATT
1 GTAAATTTT-TTCGGGAGGATTTTTCTTGGTTTTTAATTTTTAAAATTCATCAAATATTATTATT
* * * *
770248 TATTTGATATTAATTTAGTTTTCAAAAGTTCATTCATTTCCATAAATTTTAAATTTTTTCCTTGA
65 TATTTCATATTAATTCAGTTTTCAAAAATTCATTCATTTCCATAAATTTTGAATTTTTTCCTTGA
770313 AATTTTCCTTTTTTTGAAATACAGAGTTTTCTACT-C
130 AATTTTCCTTTTTTTGAAATACAGAGTTTTCTACTCC
* *
770349 GT-AATTTTTTTGGGAGGATTTTTCTTGGTTTTTAGTTTTTAAAATTCATCAAATATTATTATTT
1 GTAAATTTTTTCGGGAGGATTTTTCTTGGTTTTTAATTTTTAAAATTCATCAAATATTATTATTT
* * * * * *
770413 ATTTGATATTAATTCAGTTTTAAAAAAATCATTCATTTTCAT---TTTT-AAATTTTTCCTTCAA
66 ATTTCATATTAATTCAGTTTTCAAAAATTCATTCATTTCCATAAATTTTGAATTTTTTCCTTGAA
** * * * *
770474 ATTTTTATTTTTTCGAAATACGGTGTTTTCTATTCC
131 ATTTTCCTTTTTTTGAAATACAGAGTTTTCTACTCC
* * * *
770510 ATAAATTTTTTCCGGAGGATTTTTCTTGGTTTTTAATTTTCAAAATTCATAAAATATTATTATTT
1 GTAAATTTTTTCGGGAGGATTTTTCTTGGTTTTTAATTTTTAAAATTCATCAAATATTATTATTT
* * * *
770575 ATTTCATATTAATTCAATTTTTAAAAATTCTTTCATTTCCATAAATTTTGAATTTTTTCCTTAAA
66 ATTTCATATTAATTCAGTTTTCAAAAATTCATTCATTTCCATAAATTTTGAATTTTTTCCTTGAA
* *
770640 ATTTT-CTTTTTTTCGAAATACGGAATTTTCTACTCC
131 ATTTTCCTTTTTTT-GAAATACAGAGTTTTCTACTCC
*
770676 GTAAATTTTTTCGGGAGGATTTTT-TTAGTTTTTAATTTTTAAAATTCATCAAATATTATTATTT
1 GTAAATTTTTTCGGGAGGATTTTTCTTGGTTTTTAATTTTTAAAATTCATCAAATATTATTATTT
* *
770740 ATTTCATATTAATTCAGCTTTCAAAAATTTATTCATTTCCATAAATTTTGAATTTTTT-CTTGAA
66 ATTTCATATTAATTCAGTTTTCAAAAATTCATTCATTTCCATAAATTTTGAATTTTTTCCTTGAA
* * * *
770804 ATTCTCC-TTTTTTGAAATAGAGAGTTTTCTAATTC
131 ATTTTCCTTTTTTTGAAATACAGAGTTTTCTACTCC
* *
770839 GTAAATTTTTTCGAGAGGATTTTTCTTGGTTTTTAATTTTTAAAATTCACCAAATATTATTATTT
1 GTAAATTTTTTCGGGAGGATTTTTCTTGGTTTTTAATTTTTAAAATTCATCAAATATTATTATTT
* ** * *
770904 ATTTCACATTAATTCTTTTTTCAAAAATTCCTTCATTTTCATAAATTTTGAATTATTTT-CTTGA
66 ATTTCATATTAATTCAGTTTTCAAAAATTCATTCATTTCCATAAATTTTGAATT-TTTTCCTTGA
770968 AA
130 AA
770970 ATCCCCATTT
Statistics
Matches: 547, Mismatches: 64, Indels: 21
0.87 0.10 0.03
Matches are distributed among these distances:
160 41 0.07
161 6 0.01
162 93 0.17
163 40 0.07
164 188 0.34
165 118 0.22
166 61 0.11
ACGTcount: A:0.29, C:0.10, G:0.08, T:0.52
Consensus pattern (166 bp):
GTAAATTTTTTCGGGAGGATTTTTCTTGGTTTTTAATTTTTAAAATTCATCAAATATTATTATTT
ATTTCATATTAATTCAGTTTTCAAAAATTCATTCATTTCCATAAATTTTGAATTTTTTCCTTGAA
ATTTTCCTTTTTTTGAAATACAGAGTTTTCTACTCC
Found at i:771083 original size:167 final size:164
Alignment explanation
Indices: 770266--771128 Score: 505
Period size: 164 Copynumber: 5.2 Consensus size: 164
770256 ATTAATTTAG
* * * * *
770266 TTTTCAAAAGTTCATTCATTTCCATAAATTTTAAATTTTTTCCTTGAAATTTTCCTTTTTTTGAA
1 TTTTCAAAAATTCATTCATTTCCATAAATTTTGAATTTTTT-CTTGAAA-ATCCCCTTTTTTGAA
* * * *** ** * *
770331 ATACAGAGTTTTCT-ACTCGT-AATTTTTTTGGGAGGATTTTTCTTGGTTTTTAGTTTTTAAAAT
64 ATACAGAGTTTTCTAATTCGTAAATTTTTTAGAGAGGATTTTTCTCAATTTAAAATTTTGAAAAT
* * **** * **
770394 TCATCAAATATTATTATTTATTTGATATTAATTCAG
129 TCACCAAATATTATTATTGAACACACATTAATTCTT
* * * * * * * ****
770430 TTTTAAAAAAATCATTCATTTTCAT---TTTTAAATTTTTCCTTCAAATTTTTATTTTTTCGAAA
1 TTTTCAAAAATTCATTCATTTCCATAAATTTTGAATTTTTTCTTGAAAATCCCCTTTTTT-GAAA
* * * * *** ** *
770492 TACGGTGTTTTCT-ATTCCATAAATTTTTTCCG-GAGGATTTTTCTTGGTTTTTAATTTTCAAAA
65 TACAGAGTTTTCTAATT-CGTAAATTTTTT-AGAGAGGATTTTTCTCAATTTAAAATTTTGAAAA
** * *** * *
770555 TTCATAAAATATTATTATTTATTTCATATTAATTCAAT
128 TTCACCAAATATTATTATTGAACACACATTAATTC-TT
* ** *
770593 TTTT-AAAAATTCTTTCATTTCCATAAATTTTGAATTTTTTCCTT-AAAATTTTCTTTTTTTCGA
1 TTTTCAAAAATTCATTCATTTCCATAAATTTTGAATTTTTT-CTTGAAAA-TCCCCTTTTTT-GA
* * * * * * * * ** *
770656 AATACGGAATTTTCTACTCCGTAAATTTTTTCGGGAGGATTTTT-TTAGTTTTTAATTTTTAAAA
63 AATACAGAGTTTTCTAATTCGTAAATTTTTTAGAGAGGATTTTTCTCAATTTAAAATTTTGAAAA
* * *** * **
770720 TTCATCAAATATTATTATTTATTTCATATTAATTCAG
128 TTCACCAAATATTATTATTGAACACACATTAATTCTT
* * * *
770757 CTTTCAAAAATTTATTCATTTCCATAAATTTTGAATTTTTTCTTGAAATTCTCCTTTTTTGAAAT
1 TTTTCAAAAATTCATTCATTTCCATAAATTTTGAATTTTTTCTTGAAAATCCCCTTTTTTGAAAT
* * *** ** *
770822 AGAGAGTTTTCTAATTCGTAAATTTTTTCGAGAGGATTTTTCTTGGTTTTTAATTTTTAAAATTC
66 ACAGAGTTTTCTAATTCGTAAATTTTTTAGAGAGGATTTTTCTCAATTTAAAATTTTGAAAATTC
* ***
770887 ACCAAATATTATTATTTATTTCACATTAATTCTT
131 ACCAAATATTATTATTGAACACACATTAATTCTT
* *
770921 TTTTCAAAAATTCCTTCATTTTCATAAATTTTGAATTATTTTCTTGAAAATCCCCATTTTTTGAG
1 TTTTCAAAAATTCATTCATTTCCATAAATTTTGAATT-TTTTCTTGAAAATCCCC-TTTTTTGA-
* ** * *
770986 AA-ACTGAGTTTTCTTTTTTCTTAAATTTTTTA-AGAGGGATTTTTCTCAATTTAAAATTTTGAG
63 AATACAGAGTTTTC-TAATTCGTAAATTTTTTAGAGA-GGATTTTTCTCAATTTAAAATTTTGAA
* * *
771049 AATTCATCTAATATT-TTCATTGAACACCCATTAATTCAATT
126 AATTCACCAAATATTATT-ATTGAACACACATTAATTC--TT
* * * * *
771090 TTAT-AAAATTTAATTTATTT-CATTAATTTTGAATTTTTT
1 TTTTCAAAAATTCATTCATTTCCATAAATTTTGAATTTTTT
771129 ATCATATATT
Statistics
Matches: 591, Mismatches: 85, Indels: 44
0.82 0.12 0.06
Matches are distributed among these distances:
159 9 0.02
160 23 0.04
161 14 0.02
162 87 0.15
163 46 0.08
164 122 0.21
165 120 0.20
166 75 0.13
167 78 0.13
168 12 0.02
169 5 0.01
ACGTcount: A:0.30, C:0.11, G:0.08, T:0.52
Consensus pattern (164 bp):
TTTTCAAAAATTCATTCATTTCCATAAATTTTGAATTTTTTCTTGAAAATCCCCTTTTTTGAAAT
ACAGAGTTTTCTAATTCGTAAATTTTTTAGAGAGGATTTTTCTCAATTTAAAATTTTGAAAATTC
ACCAAATATTATTATTGAACACACATTAATTCTT
Found at i:772578 original size:162 final size:162
Alignment explanation
Indices: 772405--772856 Score: 701
Period size: 162 Copynumber: 2.8 Consensus size: 162
772395 TTAAGCAATT
* *
772405 TTTATTTTTTCTAATCTTTTATATTCCTATGGGCATCCGTAGGGGTATAAAAGATTTTAAAAACT
1 TTTATTTTTTCTAATCTTTTATATTCCTATGGGCATCCGTAGGGGTATAAAAGATTTCAAAAACC
* * *
772470 TTTCATATTCTTTCGAGCTTCCATTAAGGTACGAAATGATATTTTCAAAAATAAATAAAATTAAG
66 TTTCGTATTCTTTCGAGCTTCCATTAGGGTACGAAATGATATTTTCAAAAATAAATAAAATTAAC
* *
772535 TTAAATTGGTATTATTGGGATAAATTTTAACA
131 TTAAATTGGTATTAGTGGGATAAATTCTAACA
*
772567 TTTATTTTTTCTAATCTTTTATATTCCTATGGGCATCCATAGGGGTATAAAAGATTTCAAAAACC
1 TTTATTTTTTCTAATCTTTTATATTCCTATGGGCATCCGTAGGGGTATAAAAGATTTCAAAAACC
* * *
772632 TTTCGTATTATTTCAAGCTTCCATTAGGGTACGAAATGACATTTTCAAAAATAAATAAAATTAAC
66 TTTCGTATTCTTTCGAGCTTCCATTAGGGTACGAAATGATATTTTCAAAAATAAATAAAATTAAC
**
772697 TTAAATTGGTATTAGTGGGATAAATTCTAATG
131 TTAAATTGGTATTAGTGGGATAAATTCTAACA
* * *
772729 TTTATTTCTTT-TAATCTTTTATTTTCCTATAGGCAT-CGTAGGGGTATCAAAGATTTCAAAAAC
1 TTTATTT-TTTCTAATCTTTTATATTCCTATGGGCATCCGTAGGGGTATAAAAGATTTCAAAAAC
* * **
772792 CTTTCGTATTCTTTCGGGCTTCCATTAGGGTACGAAATGTTATTTTTGAAAATAAATAAAATTAA
65 CTTTCGTATTCTTTCGAGCTTCCATTAGGGTACGAAATGATATTTTCAAAAATAAATAAAATTAA
772857 ATTGAATTAA
Statistics
Matches: 265, Mismatches: 24, Indels: 3
0.91 0.08 0.01
Matches are distributed among these distances:
161 83 0.31
162 179 0.68
163 3 0.01
ACGTcount: A:0.34, C:0.12, G:0.13, T:0.41
Consensus pattern (162 bp):
TTTATTTTTTCTAATCTTTTATATTCCTATGGGCATCCGTAGGGGTATAAAAGATTTCAAAAACC
TTTCGTATTCTTTCGAGCTTCCATTAGGGTACGAAATGATATTTTCAAAAATAAATAAAATTAAC
TTAAATTGGTATTAGTGGGATAAATTCTAACA
Found at i:773427 original size:155 final size:153
Alignment explanation
Indices: 773145--773675 Score: 674
Period size: 155 Copynumber: 3.4 Consensus size: 153
773135 GCATTATCCC
* * *
773145 AAGTCCTTTAGGGGTACCAGGTACTTTTAGGTC-AAAGGTATCCCTTAAGGTCATTTTCATAATT
1 AAGTCCTTTA-GGGTATCAGGTACTTTTACGTCGAAAGGTATCCC-TAAGGGCATTTTCATAATT
* * *
773209 TTTCATAACCGATTCCTAGGTTGTCACCGGGTCTGCTTTTATATCGAAGGTAGATATTTAGGATA
64 TTTTAGAACCGAGTCCTAGGTTGTCACC-GGTCTGCTTTTATATCGAAGGTAGATATTTAGGATA
* *
773274 TGTTCATCTTATCTATTATCCTTTTT
128 AGTTCATCTCATCTATTATCCTTTTT
* * *
773300 AAGTCCTTTAAGGGTATCGGGTACTTTTATGTCGAAA-GTATTCCCTAAGAGCATTTTCATAATT
1 AAGTCCTTT-AGGGTATCAGGTACTTTTACGTCGAAAGGTA-TCCCTAAGGGCATTTTCATAATT
* * * *
773364 TTTTAGAACCGAGTCCTAGGCTGTCACCAAGTCTGCTTTTATACCGAAGATAGATATTTAGGATA
64 TTTTAGAACCGAGTCCTAGGTTGTCACC-GGTCTGCTTTTATATCGAAGGTAGATATTTAGGATA
773429 AGTTCATCTCATCTATTATCCTTTTT
128 AGTTCATCTCATCTATTATCCTTTTT
* *
773455 AAGTCCTTTAGGGATATCAGGTACTTTTACGT-TAAAGGTATCCCCTAGGGGCATTTTCATAATT
1 AAGTCCTTTAGGG-TATCAGGTACTTTTACGTCGAAAGGTAT-CCCTAAGGGCATTTTCATAATT
** * * * *
773519 TTTTAGAATTGAGTCCTATGTTTTCACCGGACCTGCTTTTATGTCGAAGGTAGATATTTAGGATA
64 TTTTAGAACCGAGTCCTAGGTTGTCACCGG-TCTGCTTTTATATCGAAGGTAGATATTTAGGATA
*
773584 GGTTCATCTCATCTATTATCCTTTTT
128 AGTTCATCTCATCTATTATCCTTTTT
* * * **
773610 AAGTCCTATAGGAGTATCGGGTACTTTTACGTTG-AAGGTATCCTCTAAGGGCATTTTTGTAATT
1 AAGTCCTTTAGG-GTATCAGGTACTTTTACGTCGAAAGGTATCC-CTAAGGGCATTTTCATAATT
773674 TT
64 TT
773676 CAAGAACTAA
Statistics
Matches: 329, Mismatches: 37, Indels: 20
0.85 0.10 0.05
Matches are distributed among these distances:
154 11 0.03
155 309 0.94
156 9 0.03
ACGTcount: A:0.25, C:0.17, G:0.18, T:0.40
Consensus pattern (153 bp):
AAGTCCTTTAGGGTATCAGGTACTTTTACGTCGAAAGGTATCCCTAAGGGCATTTTCATAATTTT
TTAGAACCGAGTCCTAGGTTGTCACCGGTCTGCTTTTATATCGAAGGTAGATATTTAGGATAAGT
TCATCTCATCTATTATCCTTTTT
Found at i:773724 original size:155 final size:153
Alignment explanation
Indices: 773145--773747 Score: 645
Period size: 155 Copynumber: 3.9 Consensus size: 153
773135 GCATTATCCC
* * * ** *
773145 AAGTCCTTTAGGGGTACCAGGTACTTTTAGGTCAAAGGTATCCCTTAAGGTCATTTTCATAATTT
1 AAGTCCTTTA-GGGTATCGGGTACTTTTACGTTGAAGGTATCCC-TAAGGGCATTTTCATAATTT
* * * * * * ** *
773210 TTCATAACCGATTCCTAGGTTGTCACCGGGTCTGCTTTTATATCGAAGGTAGATATTTAGGATAT
64 TTTAGAACTGAGTCCTTGGTTGTCACCAGGTCTGCTTTTATGCCGAAGGTAGATATTTAGGATAG
*
773275 GTTCATCTTATCTATTATCCTTTTT
129 GTTCATCTCATCTATTATCCTTTTT
* * * *
773300 AAGTCCTTTAAGGGTATCGGGTACTTTTATGTCGAAAGTATTCCCTAAGAGCATTTTCATAATTT
1 AAGTCCTTT-AGGGTATCGGGTACTTTTACGTTGAAGGTA-TCCCTAAGGGCATTTTCATAATTT
* * * * * * *
773365 TTTAGAACCGAGTCCTAGGCTGTCACCAAGTCTGCTTTTATACCGAAGATAGATATTTAGGATAA
64 TTTAGAACTGAGTCCTTGGTTGTCACCAGGTCTGCTTTTATGCCGAAGGTAGATATTTAGGATAG
773430 GTTCATCTCATCTATTATCCTTTTT
129 GTTCATCTCATCTATTATCCTTTTT
* * *
773455 AAGTCCTTTAGGGATATCAGGTACTTTTACGTTAAAGGTATCCCCTAGGGGCATTTTCATAATTT
1 AAGTCCTTTAGGG-TATCGGGTACTTTTACGTTGAAGGTAT-CCCTAAGGGCATTTTCATAATTT
* * * *
773520 TTTAGAATTGAGTCCTAT-GTTTTCACC-GGACCTGCTTTTATGTCGAAGGTAGATATTTAGGAT
64 TTTAGAACTGAGTCCT-TGGTTGTCACCAGG-TCTGCTTTTATGCCGAAGGTAGATATTTAGGAT
773583 AGGTTCATCTCATCTATTATCCTTTTT
127 AGGTTCATCTCATCTATTATCCTTTTT
* **
773610 AAGTCCTATAGGAGTATCGGGTACTTTTACGTTGAAGGTATCCTCTAAGGGCATTTTTGTAATTT
1 AAGTCCTTTAGG-GTATCGGGTACTTTTACGTTGAAGGTATCC-CTAAGGGCATTTTCATAATTT
** * * * * * * * * * *
773675 TCAAGAACTAACTCCTTGGTTGTCTCCAGGT-TCGGTTTTATGCCAAAGGTGGGTATTAAGAATT
64 TTTAGAACTGAGTCCTTGGTTGTCACCAGGTCT-GCTTTTATGCCGAAGGTAGATATTTAGGATA
773739 GGTTCATCT
128 GGTTCATCT
773748 TTTTTTTTTA
Statistics
Matches: 380, Mismatches: 57, Indels: 22
0.83 0.12 0.05
Matches are distributed among these distances:
154 10 0.03
155 362 0.95
156 8 0.02
ACGTcount: A:0.25, C:0.17, G:0.19, T:0.39
Consensus pattern (153 bp):
AAGTCCTTTAGGGTATCGGGTACTTTTACGTTGAAGGTATCCCTAAGGGCATTTTCATAATTTTT
TAGAACTGAGTCCTTGGTTGTCACCAGGTCTGCTTTTATGCCGAAGGTAGATATTTAGGATAGGT
TCATCTCATCTATTATCCTTTTT
Found at i:777393 original size:13 final size:13
Alignment explanation
Indices: 777375--777399 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
777365 CATTTTACTA
777375 TGTATCGATACAT
1 TGTATCGATACAT
777388 TGTATCGATACA
1 TGTATCGATACA
777400 ATGTCCCATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:777507 original size:13 final size:13
Alignment explanation
Indices: 777489--777513 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
777479 TACAATGGAC
777489 ATGTATCGATACT
1 ATGTATCGATACT
777502 ATGTATCGATAC
1 ATGTATCGATAC
777514 AAAGCATAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
ATGTATCGATACT
Found at i:777531 original size:33 final size:32
Alignment explanation
Indices: 777471--777533 Score: 90
Period size: 32 Copynumber: 1.9 Consensus size: 32
777461 CAATTAAGTG
* * *
777471 TGTATCGATACAATGGACATGTATCGATACTA
1 TGTATCGATACAAAGCAAATGTATCGATACTA
777503 TGTATCGATACAAAGCATAATGTATCGATAC
1 TGTATCGATACAAAGCA-AATGTATCGATAC
777534 ATCTAGATGT
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
32 15 0.56
33 12 0.44
ACGTcount: A:0.37, C:0.16, G:0.17, T:0.30
Consensus pattern (32 bp):
TGTATCGATACAAAGCAAATGTATCGATACTA
Found at i:779940 original size:13 final size:13
Alignment explanation
Indices: 779922--779948 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
779912 TTTCAACAAT
779922 TTGTATCGATACA
1 TTGTATCGATACA
779935 TTGTATCGATACA
1 TTGTATCGATACA
779948 T
1 T
779949 AAGTGTTGTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.30, C:0.15, G:0.15, T:0.41
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:779959 original size:19 final size:19
Alignment explanation
Indices: 779935--779985 Score: 102
Period size: 19 Copynumber: 2.7 Consensus size: 19
779925 TATCGATACA
779935 TTGTATCGATACATAAGTG
1 TTGTATCGATACATAAGTG
779954 TTGTATCGATACATAAGTG
1 TTGTATCGATACATAAGTG
779973 TTGTATCGATACA
1 TTGTATCGATACA
779986 ATGTATCGCT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 32 1.00
ACGTcount: A:0.31, C:0.12, G:0.20, T:0.37
Consensus pattern (19 bp):
TTGTATCGATACATAAGTG
Found at i:780040 original size:20 final size:20
Alignment explanation
Indices: 780015--780069 Score: 76
Period size: 20 Copynumber: 2.8 Consensus size: 20
780005 CTGCCAAGGA
780015 AATGTATCGATACATT-ACTC
1 AATGTATCGATACATTGA-TC
780035 AATGTATCGATACATTGATC
1 AATGTATCGATACATTGATC
**
780055 TTTGTATCGATACAT
1 AATGTATCGATACAT
780070 CTGGGAATTT
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
20 31 0.97
21 1 0.03
ACGTcount: A:0.33, C:0.16, G:0.13, T:0.38
Consensus pattern (20 bp):
AATGTATCGATACATTGATC
Found at i:790491 original size:13 final size:13
Alignment explanation
Indices: 790473--790497 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
790463 CAAAGATCAG
790473 TGTATCGATACAA
1 TGTATCGATACAA
790486 TGTATCGATACA
1 TGTATCGATACA
790498 TTTGAGTAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:791274 original size:55 final size:55
Alignment explanation
Indices: 791209--791359 Score: 146
Period size: 53 Copynumber: 2.7 Consensus size: 55
791199 GGACCAATAC
* * **
791209 GCTGATTCACGGCCAACGATATTGGGTTTAAAGATGAGAAAAAGGATGTTAATGT
1 GCTGATTCACGGCCAACGACATTGGGTTTAAAGATGAGAAAAAGAATGCCAATGT
* * * ** *
791264 GCTGATTCACGGTCAGCGACATTTAGACTTGAAGATGAG---AAGAATGCCAATGT
1 GCTGATTCACGGCCAACGACA-TTGGGTTTAAAGATGAGAAAAAGAATGCCAATGT
* *
791317 ACTGATTCAAGGCCAACGACATTGGGTTTTAAAGATGACGAAA
1 GCTGATTCACGGCCAACGACATTGGG-TTTAAAGATGA-GAAA
791360 GCACCAATAT
Statistics
Matches: 72, Mismatches: 18, Indels: 10
0.72 0.18 0.10
Matches are distributed among these distances:
52 3 0.04
53 37 0.51
54 1 0.01
55 18 0.25
56 13 0.18
ACGTcount: A:0.34, C:0.15, G:0.26, T:0.25
Consensus pattern (55 bp):
GCTGATTCACGGCCAACGACATTGGGTTTAAAGATGAGAAAAAGAATGCCAATGT
Found at i:791433 original size:49 final size:49
Alignment explanation
Indices: 791259--791746 Score: 457
Period size: 49 Copynumber: 9.8 Consensus size: 49
791249 AAAGGATGTT
* * * * *
791259 AATGTGCTGATTCACGGTCAGCGACATTTAGACTTGAAGATGAGAAGAATGCC
1 AATGTGCTGATTCAAGGCCAGCGACA-TTGGACTTAAAGAT-A-AAG-GTGCC
* * ** * **
791312 AATGTACTGATTCAAGGCCAACGACATTGGGTTTTAAAGATGACGAAAGCACC
1 AATGTGCTGATTCAAGGCCAGCGACATT-GGACTTAAAGAT-A--AAGGTGCC
* * * * *
791365 AATATGTTGATTCCAGGCCAGTGATATTGGACTTAAAGATAAAGGTGCC
1 AATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATAAAGGTGCC
*
791414 AATGTGCTAATTCAAGGCCAGCGACATTGGACTTAAAAGATGACAAAGGTGCC
1 AATGTGCTGATTCAAGGCCAGCGACATTGGACTT-AAAGAT---AAAGGTGCC
* * * * *
791467 CATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAATGTGCC
1 AATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATAAAGGTGCC
* *
791516 AATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAAGATGACAAATGCGCC
1 AATGTGCTGATTCAAGGCCAGCGACATTGGACTT-AAAGAT---AAAGGTGCC
* *
791569 AATATGCTGATTCAAGGCCAGCGATATTGGAC-T-----TAAAGGTGCC
1 AATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATAAAGGTGCC
* *
791612 AATGTGCTGATTCAAGGCTAGCGACATTGGTCTTAAAGATAAAGGTGCC
1 AATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATAAAGGTGCC
* * **
791661 AACGTGCTGATTCAAGGCCAACGACATTGGTTTTAAAGATAAAGGTGCC
1 AATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATAAAGGTGCC
* ** *
791710 AATATGCTGATTCAAGGCCAATGATATTGGACTTAAA
1 AATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAA
791747 AGAAGATGCC
Statistics
Matches: 360, Mismatches: 59, Indels: 36
0.79 0.13 0.08
Matches are distributed among these distances:
43 35 0.10
44 1 0.00
46 1 0.00
49 157 0.44
50 12 0.03
51 1 0.00
52 19 0.05
53 131 0.36
54 3 0.01
ACGTcount: A:0.33, C:0.18, G:0.24, T:0.25
Consensus pattern (49 bp):
AATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATAAAGGTGCC
Found at i:791433 original size:102 final size:102
Alignment explanation
Indices: 791263--791749 Score: 546
Period size: 102 Copynumber: 4.8 Consensus size: 102
791253 GATGTTAATG
* * * * * * *
791263 TGCTGATTCACGGTCAGCGACATTTAGACTTGAAGATGAGAAGAATGCCAATGTACTGATTCAAG
1 TGCTGATTCAAGGCCAGCGATA-TTGGACTTAAAGAT-A-AAG-GTGCCAATGTGCTGATTCAAG
* ** * *
791328 GCCAACGACATTGGGTTTTAAAGATGACGAAA-GCACCAATA
62 GCCAGCGACATTGGACTTAAAAGATGAC-AAAGGCGCCAATA
* * * *
791369 TGTTGATTCCAGGCCAGTGATATTGGACTTAAAGATAAAGGTGCCAATGTGCTAATTCAAGGCCA
1 TGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATAAAGGTGCCAATGTGCTGATTCAAGGCCA
* *
791434 GCGACATTGGACTTAAAAGATGACAAAGGTGCCCATA
66 GCGACATTGGACTTAAAAGATGACAAAGGCGCCAATA
* *
791471 TGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAATGTGCCAATGTGCTGATTCAAGGCCA
1 TGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATAAAGGTGCCAATGTGCTGATTCAAGGCCA
*
791536 GCGACATTGGACTTAAAAGATGACAAATGCGCCAATA
66 GCGACATTGGACTTAAAAGATGACAAAGGCGCCAATA
*
791573 TGCTGATTCAAGGCCAGCGATATTGGAC-T-----TAAAGGTGCCAATGTGCTGATTCAAGGCTA
1 TGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATAAAGGTGCCAATGTGCTGATTCAAGGCCA
* * **
791632 GCGACATTGGTCTT-AAAGAT---AAAGGTGCCAACG
66 GCGACATTGGACTTAAAAGATGACAAAGGCGCCAATA
* * ** *
791665 TGCTGATTCAAGGCCAACGACATTGGTTTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCA
1 TGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATAAAGGTGCCAATGTGCTGATTCAAGGCCA
** *
791730 ATGATATTGGACTTAAAAGA
66 GCGACATTGGACTTAAAAGA
791750 AGATGCCACC
Statistics
Matches: 328, Mismatches: 45, Indels: 23
0.83 0.11 0.06
Matches are distributed among these distances:
92 33 0.10
93 1 0.00
95 6 0.02
96 40 0.12
98 38 0.12
99 5 0.02
101 4 0.01
102 169 0.52
103 3 0.01
104 1 0.00
105 12 0.04
106 16 0.05
ACGTcount: A:0.33, C:0.18, G:0.24, T:0.25
Consensus pattern (102 bp):
TGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATAAAGGTGCCAATGTGCTGATTCAAGGCCA
GCGACATTGGACTTAAAAGATGACAAAGGCGCCAATA
Found at i:791641 original size:145 final size:141
Alignment explanation
Indices: 791458--791746 Score: 407
Period size: 145 Copynumber: 2.0 Consensus size: 141
791448 AAAAGATGAC
* * * * *
791458 AAAGGTGCCCATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAATGTGCCAATGTGC
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATAAAGGTGCCAACGTGC
* *
791523 TGATTCAAGGCCAGCGACATTGGACTTAAAAGATGACAAATGCGCCAATATGCTGATTCAAGGCC
66 TGATTCAAGGCCAACGACATTGG-CTTAAAAGAT---AAAGGCGCCAATATGCTGATTCAAGGCC
*
791588 AGCGATATTGGACTT
127 AACGATATTGGACTT
* * *
791603 AAAGGTGCCAATGTGCTGATTCAAGGCTAGCGACATTGGTCTTAAAGATAAAGGTGCCAACGTGC
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATAAAGGTGCCAACGTGC
* * * *
791668 TGATTCAAGGCCAACGACATTGGTTTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAATG
66 TGATTCAAGGCCAACGACATTGGCTTAAAAGATAAAGGCGCCAATATGCTGATTCAAGGCCAACG
791733 ATATTGGACTT
131 ATATTGGACTT
791744 AAA
1 AAA
791747 AGAAGATGCC
Statistics
Matches: 129, Mismatches: 15, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
141 42 0.33
144 8 0.06
145 79 0.61
ACGTcount: A:0.33, C:0.18, G:0.25, T:0.25
Consensus pattern (141 bp):
AAAGGTGCCAATATGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATAAAGGTGCCAACGTGC
TGATTCAAGGCCAACGACATTGGCTTAAAAGATAAAGGCGCCAATATGCTGATTCAAGGCCAACG
ATATTGGACTT
Found at i:791925 original size:37 final size:35
Alignment explanation
Indices: 791778--792080 Score: 271
Period size: 34 Copynumber: 8.6 Consensus size: 35
791768 TGGGCTTTTG
* *
791778 AAGGTTGCCACTGACTTGTGGGCTTTTA-AAAAGGAGAA
1 AAGG-TGCCACGGAGTTGTGGGC-TTTAGAAAA-GA-AA
* * *
791816 AA-ATGCCACGGAGTTGTGGAC-TTA-AAAGGGAAA
1 AAGGTGCCACGGAGTTGTGGGCTTTAGAAA-AGAAA
791849 AAGAGTGCCACGGAGTTGTGGGCTTTA-AAAAGAAA
1 AAG-GTGCCACGGAGTTGTGGGCTTTAGAAAAGAAA
* * *
791884 AAGGTGCTACGGATTTATGGGCTTTGGAGAAAAGAAA
1 AAGGTGCCACGGAGTTGTGGGCTTT--AGAAAAGAAA
*
791921 AAGGTGCCACGGAGTGGTGGGCTTT-GAAAAGAAA
1 AAGGTGCCACGGAGTTGTGGGCTTTAGAAAAGAAA
* * *
791955 AAGGCGCCACGGATTTATGGGCTTTGGAGAAAAGAAA
1 AAGGTGCCACGGAGTTGTGGGCTTT--AGAAAAGAAA
*
791992 AAGGTGCCACGGAGTGGTGGGCTTT-GAAAAGAAA
1 AAGGTGCCACGGAGTTGTGGGCTTTAGAAAAGAAA
* * * *
792026 AAGAATGCCACAGAGTTGTGGGC-TTACAAAATAAA
1 AAG-GTGCCACGGAGTTGTGGGCTTTAGAAAAGAAA
* * *
792061 AAGATGCCACTGAGTCGTGG
1 AAGGTGCCACGGAGTTGTGG
792081 ACTTGGAGAA
Statistics
Matches: 223, Mismatches: 30, Indels: 28
0.79 0.11 0.10
Matches are distributed among these distances:
33 4 0.02
34 86 0.39
35 50 0.22
36 22 0.10
37 59 0.26
38 2 0.01
ACGTcount: A:0.35, C:0.13, G:0.32, T:0.20
Consensus pattern (35 bp):
AAGGTGCCACGGAGTTGTGGGCTTTAGAAAAGAAA
Found at i:791928 original size:71 final size:71
Alignment explanation
Indices: 791845--792028 Score: 323
Period size: 71 Copynumber: 2.6 Consensus size: 71
791835 ACTTAAAAGG
* * * *
791845 GAAAAAGAGTGCCACGGAGTTGTGGGCTTTAAAAAGAAAAAGGTGCTACGGATTTATGGGCTTTG
1 GAAAAAG-GTGCCACGGAGTGGTGGGCTTTGAAAAGAAAAAGGCGCCACGGATTTATGGGCTTTG
791910 GAGAAAA
65 GAGAAAA
791917 GAAAAAGGTGCCACGGAGTGGTGGGCTTTGAAAAGAAAAAGGCGCCACGGATTTATGGGCTTTGG
1 GAAAAAGGTGCCACGGAGTGGTGGGCTTTGAAAAGAAAAAGGCGCCACGGATTTATGGGCTTTGG
791982 AGAAAA
66 AGAAAA
791988 GAAAAAGGTGCCACGGAGTGGTGGGCTTTGAAAAGAAAAAG
1 GAAAAAGGTGCCACGGAGTGGTGGGCTTTGAAAAGAAAAAG
792029 AATGCCACAG
Statistics
Matches: 108, Mismatches: 4, Indels: 1
0.96 0.04 0.01
Matches are distributed among these distances:
71 101 0.94
72 7 0.06
ACGTcount: A:0.36, C:0.11, G:0.34, T:0.19
Consensus pattern (71 bp):
GAAAAAGGTGCCACGGAGTGGTGGGCTTTGAAAAGAAAAAGGCGCCACGGATTTATGGGCTTTGG
AGAAAA
Found at i:795728 original size:20 final size:20
Alignment explanation
Indices: 795703--795756 Score: 74
Period size: 20 Copynumber: 2.7 Consensus size: 20
795693 GTTGGGCACA
* *
795703 ATGTATCGATACATTTTACT-
1 ATGTATCGATACAATGT-CTC
795723 ATGTATCGATACAATGTCTC
1 ATGTATCGATACAATGTCTC
795743 ATGTATCGATACAA
1 ATGTATCGATACAA
795757 ATAGTGATAG
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
19 2 0.06
20 29 0.94
ACGTcount: A:0.33, C:0.17, G:0.13, T:0.37
Consensus pattern (20 bp):
ATGTATCGATACAATGTCTC
Found at i:806074 original size:80 final size:80
Alignment explanation
Indices: 805984--806153 Score: 236
Period size: 80 Copynumber: 2.1 Consensus size: 80
805974 CGGGGTACAC
* ** * *
805984 GGTTAGAGTACAT-CCCTCGATGAAAAATTTAATATTTTGGAGATAAAAATGGGGTTGGAGTATC
1 GGTTAGAGTACATCCCCT-GATGAAAAATTTAATACTTTGGAGATAAAAACAGGATTAGAGTATC
806048 CTCTC-AGAAATAACAA
65 CTCTCGA-AAATAACAA
806064 GGTTAGAGTACATCCCCTGATGAAAAATTTAATACTTTGGAGATAAAAACAGGATTAGAGTATCC
1 GGTTAGAGTACATCCCCTGATGAAAAATTTAATACTTTGGAGATAAAAACAGGATTAGAGTATCC
* *
806129 TTTCGAAAATAACAG
66 TCTCGAAAATAACAA
*
806144 GGTTGGAGTA
1 GGTTAGAGTA
806154 TCCCCGATAG
Statistics
Matches: 80, Mismatches: 8, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
80 75 0.94
81 5 0.06
ACGTcount: A:0.38, C:0.12, G:0.22, T:0.28
Consensus pattern (80 bp):
GGTTAGAGTACATCCCCTGATGAAAAATTTAATACTTTGGAGATAAAAACAGGATTAGAGTATCC
TCTCGAAAATAACAA
Found at i:806168 original size:80 final size:80
Alignment explanation
Indices: 806004--806641 Score: 400
Period size: 80 Copynumber: 8.1 Consensus size: 80
805994 CATCCCTCGA
* *** * * * *
806004 TGAAAAATTTAATATTTTGGAGATAAAAATGGGGTTGGAGTATCCTCTCAGAAATAACAAGGTTA
1 TGAAAAATTCAATATTTTGGAGATAAAAACAAGGTTAGAGTATCCCCTCAGAAATAACAGGGTTG
806069 GAGTACATCCCC--T-G
66 GAGT--ATCCCCGATAG
* * **
806083 ATGAAAAATTTAATACTTTGGAGATAAAAAC-AGGATTAGAGTATCCTTTC-GAAAATAACAGGG
1 -TGAAAAATTCAATATTTTGGAGATAAAAACAAGG-TTAGAGTATCCCCTCAG-AAATAACAGGG
806146 TTGGAGTATCCCCGATAG
63 TTGGAGTATCCCCGATAG
* * * * * * * * *
806164 TGAAAAAATCGATGTTTT-AAGAATAAAATCGAGGTTAAAGTATCCCTTCAGAAATAACGGGGTT
1 TGAAAAATTCAATATTTTGGAG-ATAAAAACAAGGTTAGAGTATCCCCTCAGAAATAACAGGGTT
806228 GGAGTATCCCCGATAG
65 GGAGTATCCCCGATAG
* * * * * *
806244 TGGAAAAA-TCAGTGTTTTAGTA-ATAAAACCAAGGTTAGAGTATCCCCTCAAAAATAACGGGGT
1 T-GAAAAATTCAATATTTT-GGAGATAAAAACAAGGTTAGAGTATCCCCTCAGAAATAACAGGGT
* *
806307 TGGAGTTTCCCCGAAAG
64 TGGAGTATCCCCGATAG
* * * * * ** * * * * *
806324 TGGAAAA-TCAGTGTTTTAGAAATAAATCCAAGATTGGAGTATCCCCTAAAAAATAATAGGGTTG
1 TGAAAAATTCAATATTTTGGAGATAAAAACAAGGTTAGAGTATCCCCTCAGAAATAACAGGGTTG
*
806388 GAGTGTCCCCGA-AGG
66 GAGTATCCCCGATA-G
* * * * * *
806403 TGGAAAATT--ATATTTTGGAAATAAAACCGAGGTTAGAGTATCCCCT-AAAAATAACGGGGTTG
1 TGAAAAATTCAATATTTTGGAGATAAAAACAAGGTTAGAGTATCCCCTCAGAAATAACAGGGTTG
*
806465 AAG-ATCCCCGATTA-
66 GAGTATCCCCGA-TAG
* * * * ** * * *
806479 TGGAAAA-TCAATGTTTTAGAAAT-AAAACCGGGTTGGAGTATTCCCTCAGAAATAATAGGGTTG
1 TGAAAAATTCAATATTTTGGAGATAAAAACAAGGTTAGAGTATCCCCTCAGAAATAACAGGGTTG
*
806542 GAGTATCCCCGATGG
66 GAGTATCCCCGATAG
* ** * * * * *
806557 TGGAAAA-TCGGTATTTTGGAAATAAAATTGC-A-GTTGGAGTATCCTCTCTGAAATAAC-GGAG
1 TGAAAAATTCAATATTTTGGAGATAAAA--ACAAGGTTAGAGTATCCCCTCAGAAATAACAGG-G
*
806618 TTGGAGTATCCCCGATGG
63 TTGGAGTATCCCCGATAG
806636 TGAAAA
1 TGAAAA
806642 TAGGTGTTTT
Statistics
Matches: 462, Mismatches: 71, Indels: 51
0.79 0.12 0.09
Matches are distributed among these distances:
75 1 0.00
76 32 0.07
77 43 0.09
78 68 0.15
79 124 0.27
80 181 0.39
81 12 0.03
82 1 0.00
ACGTcount: A:0.36, C:0.14, G:0.23, T:0.27
Consensus pattern (80 bp):
TGAAAAATTCAATATTTTGGAGATAAAAACAAGGTTAGAGTATCCCCTCAGAAATAACAGGGTTG
GAGTATCCCCGATAG
Found at i:806369 original size:79 final size:79
Alignment explanation
Indices: 806118--806739 Score: 586
Period size: 78 Copynumber: 7.9 Consensus size: 79
806108 AAAAACAGGA
** * *
806118 TTAGAGTATCCTTTCGAAAATAACAGGGTTGGAGTATCCCCGATAGTGAAAAAATC-GATGTTTT
1 TTAGAGTATCCCCTCAAAAATAACAGGGTTGGAGTATCCCCGATAGTG-GAAAATCAG-TGTTTT
*
806182 A-AGAATAAAATCGAGG
64 AGA-AATAAAACCGAGG
* * * *
806198 TTAAAGTATCCCTTCAGAAATAACGGGGTTGGAGTATCCCCGATAGTGGAAAAATCAGTGTTTTA
1 TTAGAGTATCCCCTCAAAAATAACAGGGTTGGAGTATCCCCGATAGTGG-AAAATCAGTGTTTTA
* *
806263 GTAATAAAACCAAGG
65 GAAATAAAACCGAGG
* * *
806278 TTAGAGTATCCCCTCAAAAATAACGGGGTTGGAGTTTCCCCGAAAGTGGAAAATCAGTGTTTTAG
1 TTAGAGTATCCCCTCAAAAATAACAGGGTTGGAGTATCCCCGATAGTGGAAAATCAGTGTTTTAG
* * *
806343 AAATAAATCCAAGA
66 AAATAAAACCGAGG
* * * * * * *
806357 TTGGAGTATCCCCTAAAAAATAATAGGGTTGGAGTGTCCCCGA-AGGTGGAAAATTA-TATTTTG
1 TTAGAGTATCCCCTCAAAAATAACAGGGTTGGAGTATCCCCGATA-GTGGAAAATCAGTGTTTTA
806420 GAAATAAAACCGAGG
65 GAAATAAAACCGAGG
* * *
806435 TTAGAGTATCCCCT-AAAAATAACGGGGTTGAAG-ATCCCCGATTA-TGGAAAATCAATGTTTTA
1 TTAGAGTATCCCCTCAAAAATAACAGGGTTGGAGTATCCCCGA-TAGTGGAAAATCAGTGTTTTA
806497 GAAATAAAACCG-GG
65 GAAATAAAACCGAGG
* * * * * * * *
806511 TTGGAGTATTCCCTCAGAAATAATAGGGTTGGAGTATCCCCGATGGTGGAAAATCGGTATTTTGG
1 TTAGAGTATCCCCTCAAAAATAACAGGGTTGGAGTATCCCCGATAGTGGAAAATCAGTGTTTTAG
**
806576 AAATAAAATTGCA-G
66 AAATAAAACCG-AGG
* * ** *
806590 TTGGAGTATCCTCTCTGAAATAAC-GGAGTTGGAGTATCCCCGATGGT-GAAAAT-AGGTGTTTT
1 TTAGAGTATCCCCTCAAAAATAACAGG-GTTGGAGTATCCCCGATAGTGGAAAATCA-GTGTTTT
* * *
806652 ATAAATAAAGCCGGGG
64 AGAAATAAAACCGAGG
* * * * * * * * *
806668 TTGGAGTATCCCCTAAAAAATAACAGGGTTGGAATGTCCTCGATGGTGGAAAATTA-TATTTTGG
1 TTAGAGTATCCCCTCAAAAATAACAGGGTTGGAGTATCCCCGATAGTGGAAAATCAGTGTTTTAG
806732 AAATAAAA
66 AAATAAAA
806740 ACATTGATGA
Statistics
Matches: 452, Mismatches: 72, Indels: 38
0.80 0.13 0.07
Matches are distributed among these distances:
76 30 0.07
77 49 0.11
78 136 0.30
79 124 0.27
80 112 0.25
81 1 0.00
ACGTcount: A:0.35, C:0.14, G:0.24, T:0.27
Consensus pattern (79 bp):
TTAGAGTATCCCCTCAAAAATAACAGGGTTGGAGTATCCCCGATAGTGGAAAATCAGTGTTTTAG
AAATAAAACCGAGG
Found at i:806581 original size:233 final size:236
Alignment explanation
Indices: 806134--806720 Score: 597
Period size: 233 Copynumber: 2.5 Consensus size: 236
806124 TATCCTTTCG
* * *
806134 AAAATAACAGG-GTTGGAGTATCCCCGATA-GTGAAAAAATCGATGTTTTA-AGAATAAAATCGA
1 AAAATAA-AGGAGTTGGAGTATCCCCGA-AGGTG--AAAATAG-TATTTTAGA-AATAAAACCGA
* * * * * *
806196 GGTTAAAGTATCCCTTCAGAAATAACGGGGTTGGAGTATCCCCGATAGTGGAAAAATCAGTGTTT
60 GGTTAGAGTATCCCCTAAAAAATAACGGGGTTGAAGTATCCCCGATAGTGGAAAAATCAATGTTT
* * *
806261 TAGTAATAAAACCAAGGTTAGAGTATCCCCTCAAAAATAACGGGGTTGGAGTTTCCCCGAAAGTG
125 TAGAAATAAAACCAAGGTTAGAGTATCCCCTCAAAAATAACAGGGTTGGAGTATCCCCGAAAGTG
*
806326 GAAAATCAGTGTTTTAGAAAT-AAA-TCCAAGATTGGAGTATCCCCTAA
190 GAAAATCAGTATTTTAGAAATAAAATTCC-AG-TTGGAGTATCCCCTAA
* *
806373 AAAATAATAGG-GTTGGAGTGTCCCCGAAGGTGGAAAATTA-TATTTTGGAAATAAAACCGAGGT
1 AAAATAA-AGGAGTTGGAGTATCCCCGAAGGT-GAAAA-TAGTATTTTAGAAATAAAACCGAGGT
806436 TAGAGTATCCCCT-AAAAATAACGGGGTTGAAG-ATCCCCGATTA-TGG-AAAATCAATGTTTTA
63 TAGAGTATCCCCTAAAAAATAACGGGGTTGAAGTATCCCCGA-TAGTGGAAAAATCAATGTTTTA
* * * * * **
806497 GAAATAAAACC-GGGTTGGAGTATTCCCTCAGAAATAATAGGGTTGGAGTATCCCCGATGGTGGA
127 GAAATAAAACCAAGGTTAGAGTATCCCCTCAAAAATAACAGGGTTGGAGTATCCCCGAAAGTGGA
* * * * **
806561 AAATCGGTATTTTGGAAATAAAATTGCAGTTGGAGTATCCTCTCT
192 AAATCAGTATTTTAGAAATAAAATTCCAGTTGGAGTATCCCCTAA
* * * * * * * *
806606 GAAATAACGGAGTTGGAGTATCCCCGATGGTGAAAATAGGTGTTTTATAAATAAAGCCGGGGTTG
1 AAAATAAAGGAGTTGGAGTATCCCCGAAGGTGAAAATA-GTATTTTAGAAATAAAACCGAGGTTA
* * * *
806671 GAGTATCCCCTAAAAAATAACAGGGTTGGAA-TGTCCTCGATGGTGGAAAA
65 GAGTATCCCCTAAAAAATAACGGGGTT-GAAGTATCCCCGATAGTGGAAAA
806721 TTATATTTTG
Statistics
Matches: 291, Mismatches: 42, Indels: 33
0.80 0.11 0.09
Matches are distributed among these distances:
231 2 0.01
232 7 0.02
233 127 0.44
234 44 0.15
235 25 0.09
236 22 0.08
237 29 0.10
238 6 0.02
239 28 0.10
240 1 0.00
ACGTcount: A:0.35, C:0.14, G:0.24, T:0.26
Consensus pattern (236 bp):
AAAATAAAGGAGTTGGAGTATCCCCGAAGGTGAAAATAGTATTTTAGAAATAAAACCGAGGTTAG
AGTATCCCCTAAAAAATAACGGGGTTGAAGTATCCCCGATAGTGGAAAAATCAATGTTTTAGAAA
TAAAACCAAGGTTAGAGTATCCCCTCAAAAATAACAGGGTTGGAGTATCCCCGAAAGTGGAAAAT
CAGTATTTTAGAAATAAAATTCCAGTTGGAGTATCCCCTAA
Found at i:807783 original size:20 final size:20
Alignment explanation
Indices: 807760--807832 Score: 101
Period size: 20 Copynumber: 3.6 Consensus size: 20
807750 ACAATTCAAA
807760 GTATCGATACATGTTGCAAT
1 GTATCGATACATGTTGCAAT
****
807780 GTATCGATACATGAAAAAAAT
1 GTATCGATACATG-TTGCAAT
807801 GTATCGATACATGTTGCAAT
1 GTATCGATACATGTTGCAAT
807821 GTATCGATACAT
1 GTATCGATACAT
807833 AAAAAAGATG
Statistics
Matches: 44, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
20 28 0.64
21 16 0.36
ACGTcount: A:0.37, C:0.14, G:0.18, T:0.32
Consensus pattern (20 bp):
GTATCGATACATGTTGCAAT
Found at i:807803 original size:21 final size:21
Alignment explanation
Indices: 807777--807853 Score: 95
Period size: 21 Copynumber: 3.7 Consensus size: 21
807767 TACATGTTGC
807777 AATGTATCGATACATGAAAAA
1 AATGTATCGATACATGAAAAA
****
807798 AATGTATCGATACATG-TTGC
1 AATGTATCGATACATGAAAAA
807818 AATGTATCGATACAT-AAAAA
1 AATGTATCGATACATGAAAAA
807838 AGATGTATCGATACAT
1 A-ATGTATCGATACAT
807854 TTCTTGGCAG
Statistics
Matches: 46, Mismatches: 8, Indels: 4
0.79 0.14 0.07
Matches are distributed among these distances:
20 16 0.35
21 30 0.65
ACGTcount: A:0.44, C:0.12, G:0.16, T:0.29
Consensus pattern (21 bp):
AATGTATCGATACATGAAAAA
Found at i:807811 original size:41 final size:41
Alignment explanation
Indices: 807760--807853 Score: 172
Period size: 41 Copynumber: 2.3 Consensus size: 41
807750 ACAATTCAAA
807760 GTATCGATACATGTTGCAATGTATCGATACATGAAAAAA-AT
1 GTATCGATACATGTTGCAATGTATCGATACAT-AAAAAAGAT
807801 GTATCGATACATGTTGCAATGTATCGATACATAAAAAAGAT
1 GTATCGATACATGTTGCAATGTATCGATACATAAAAAAGAT
807842 GTATCGATACAT
1 GTATCGATACAT
807854 TTCTTGGCAG
Statistics
Matches: 52, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
40 6 0.12
41 46 0.88
ACGTcount: A:0.40, C:0.13, G:0.17, T:0.30
Consensus pattern (41 bp):
GTATCGATACATGTTGCAATGTATCGATACATAAAAAAGAT
Found at i:807910 original size:13 final size:13
Alignment explanation
Indices: 807892--807917 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
807882 TACAGCAAGT
807892 ATGTATCGATACA
1 ATGTATCGATACA
807905 ATGTATCGATACA
1 ATGTATCGATACA
807918 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:812000 original size:15 final size:15
Alignment explanation
Indices: 811980--812010 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
811970 TAAAAATGTC
*
811980 CAAAATGAGGAAGCT
1 CAAAATGAAGAAGCT
811995 CAAAATGAAGAAGCT
1 CAAAATGAAGAAGCT
812010 C
1 C
812011 CAAACGAAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.48, C:0.16, G:0.23, T:0.13
Consensus pattern (15 bp):
CAAAATGAAGAAGCT
Found at i:814095 original size:20 final size:21
Alignment explanation
Indices: 814025--814101 Score: 68
Period size: 20 Copynumber: 3.6 Consensus size: 21
814015 ATGTCCAAAA
*
814025 TGTATCGATACATGTTTTTG-
1 TGTATCGATACATCTTTTTGT
** *
814045 TGTATCGATACATCTGGAAATTCT
1 TGTATCGATACATCT---TTTTGT
814069 ATGTATCGATACAT-TTTTTGT
1 -TGTATCGATACATCTTTTTGT
814090 TGTATCGATACA
1 TGTATCGATACA
814102 ATGTATCGAT
Statistics
Matches: 45, Mismatches: 7, Indels: 10
0.73 0.11 0.16
Matches are distributed among these distances:
20 26 0.58
21 3 0.07
23 2 0.04
24 1 0.02
25 13 0.29
ACGTcount: A:0.26, C:0.13, G:0.17, T:0.44
Consensus pattern (21 bp):
TGTATCGATACATCTTTTTGT
Found at i:814108 original size:13 final size:13
Alignment explanation
Indices: 814090--814127 Score: 67
Period size: 13 Copynumber: 2.9 Consensus size: 13
814080 CATTTTTTGT
814090 TGTATCGATACAA
1 TGTATCGATACAA
*
814103 TGTATCGATACAC
1 TGTATCGATACAA
814116 TGTATCGATACA
1 TGTATCGATACA
814128 GGGTGATTAT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 24 1.00
ACGTcount: A:0.34, C:0.18, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:814272 original size:21 final size:21
Alignment explanation
Indices: 814248--814294 Score: 55
Period size: 21 Copynumber: 2.3 Consensus size: 21
814238 AAATCTTTTG
814248 CAAAAT-ACTT-GTTCTTCACTT
1 CAAAATAACTTCGTTCTTCA--T
814269 C-AAATAACTTCGTTCTTCAT
1 CAAAATAACTTCGTTCTTCAT
814289 CAAAAT
1 CAAAAT
814295 CAGCATCAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 6
0.79 0.00 0.21
Matches are distributed among these distances:
20 6 0.26
21 9 0.39
22 8 0.35
ACGTcount: A:0.34, C:0.23, G:0.04, T:0.38
Consensus pattern (21 bp):
CAAAATAACTTCGTTCTTCAT
Found at i:814291 original size:20 final size:19
Alignment explanation
Indices: 814250--814292 Score: 52
Period size: 20 Copynumber: 2.2 Consensus size: 19
814240 ATCTTTTGCA
814250 AAATACTTGTTCTTCACTTC
1 AAATACTTGTTCTTCAC-TC
814270 AAATAACTTCGTTCTTCA-TC
1 AAAT-ACTT-GTTCTTCACTC
814290 AAA
1 AAA
814293 ATCAGCATCA
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
20 9 0.43
21 4 0.19
22 8 0.38
ACGTcount: A:0.33, C:0.23, G:0.05, T:0.40
Consensus pattern (19 bp):
AAATACTTGTTCTTCACTC
Found at i:815956 original size:31 final size:31
Alignment explanation
Indices: 815921--815982 Score: 124
Period size: 31 Copynumber: 2.0 Consensus size: 31
815911 AATTTTGATA
815921 TGAATTACTTGATTAAGGGGGAGATTTTTTT
1 TGAATTACTTGATTAAGGGGGAGATTTTTTT
815952 TGAATTACTTGATTAAGGGGGAGATTTTTTT
1 TGAATTACTTGATTAAGGGGGAGATTTTTTT
815983 AAACGGGGGA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.26, C:0.03, G:0.26, T:0.45
Consensus pattern (31 bp):
TGAATTACTTGATTAAGGGGGAGATTTTTTT
Found at i:816623 original size:20 final size:20
Alignment explanation
Indices: 816600--816672 Score: 101
Period size: 20 Copynumber: 3.6 Consensus size: 20
816590 ACAATTCAAA
816600 GTATCGATACATGTTGCAAT
1 GTATCGATACATGTTGCAAT
****
816620 GTATCGATACATGAAAAAAAT
1 GTATCGATACATG-TTGCAAT
816641 GTATCGATACATGTTGCAAT
1 GTATCGATACATGTTGCAAT
816661 GTATCGATACAT
1 GTATCGATACAT
816673 AAAAAAGATG
Statistics
Matches: 44, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
20 28 0.64
21 16 0.36
ACGTcount: A:0.37, C:0.14, G:0.18, T:0.32
Consensus pattern (20 bp):
GTATCGATACATGTTGCAAT
Found at i:816643 original size:21 final size:21
Alignment explanation
Indices: 816617--816693 Score: 95
Period size: 21 Copynumber: 3.7 Consensus size: 21
816607 TACATGTTGC
816617 AATGTATCGATACATGAAAAA
1 AATGTATCGATACATGAAAAA
****
816638 AATGTATCGATACATG-TTGC
1 AATGTATCGATACATGAAAAA
816658 AATGTATCGATACAT-AAAAA
1 AATGTATCGATACATGAAAAA
816678 AGATGTATCGATACAT
1 A-ATGTATCGATACAT
816694 TTCTTGGCAG
Statistics
Matches: 46, Mismatches: 8, Indels: 4
0.79 0.14 0.07
Matches are distributed among these distances:
20 16 0.35
21 30 0.65
ACGTcount: A:0.44, C:0.12, G:0.16, T:0.29
Consensus pattern (21 bp):
AATGTATCGATACATGAAAAA
Found at i:816651 original size:41 final size:41
Alignment explanation
Indices: 816600--816693 Score: 172
Period size: 41 Copynumber: 2.3 Consensus size: 41
816590 ACAATTCAAA
816600 GTATCGATACATGTTGCAATGTATCGATACATGAAAAAA-AT
1 GTATCGATACATGTTGCAATGTATCGATACAT-AAAAAAGAT
816641 GTATCGATACATGTTGCAATGTATCGATACATAAAAAAGAT
1 GTATCGATACATGTTGCAATGTATCGATACATAAAAAAGAT
816682 GTATCGATACAT
1 GTATCGATACAT
816694 TTCTTGGCAG
Statistics
Matches: 52, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
40 6 0.12
41 46 0.88
ACGTcount: A:0.40, C:0.13, G:0.17, T:0.30
Consensus pattern (41 bp):
GTATCGATACATGTTGCAATGTATCGATACATAAAAAAGAT
Found at i:819957 original size:35 final size:34
Alignment explanation
Indices: 819918--819985 Score: 100
Period size: 35 Copynumber: 2.0 Consensus size: 34
819908 AAGGAAATGA
**
819918 AGTGCATCCTACTCTTTTAGGACAAAGGGAAAAAT
1 AGTGCATCCTACTCTTGGAGGACAAA-GGAAAAAT
*
819953 AGTGCATCCTACTCTTGGAGGATAAAGGAAAAA
1 AGTGCATCCTACTCTTGGAGGACAAAGGAAAAA
819986 GGAAATGAAG
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
34 7 0.23
35 23 0.77
ACGTcount: A:0.38, C:0.16, G:0.22, T:0.24
Consensus pattern (34 bp):
AGTGCATCCTACTCTTGGAGGACAAAGGAAAAAT
Found at i:820047 original size:43 final size:42
Alignment explanation
Indices: 819976--820123 Score: 129
Period size: 43 Copynumber: 3.5 Consensus size: 42
819966 CTTGGAGGAT
* *** *
819976 AAAG-GAAAAAGGAAATGAAGTGTGTCCTGCTTTTTTAGCACA
1 AAAGAGAAGAAGGAAATGAAGTACATCCTGCTTTTTAAG-ACA
* *
820018 AAAGAGAAGAAGGAAATGAAGTACATCCTGCTCTTTGAGAACA
1 AAAGAGAAGAAGGAAATGAAGTACATCCTGCTTTTTAAG-ACA
* * * *
820061 AAGGAG-AGAAGGAAATAAAGTACATCTTGCTCTTTGAAGACA
1 AAAGAGAAGAAGGAAATGAAGTACATCCTGCT-TTTTAAGACA
* *
820103 AAGGGAAAAGAAGGAAATGAA
1 AA-AGAGAAGAAGGAAATGAA
820124 ATGTGCCCTG
Statistics
Matches: 87, Mismatches: 15, Indels: 6
0.81 0.14 0.06
Matches are distributed among these distances:
42 32 0.37
43 43 0.49
44 12 0.14
ACGTcount: A:0.45, C:0.11, G:0.25, T:0.20
Consensus pattern (42 bp):
AAAGAGAAGAAGGAAATGAAGTACATCCTGCTTTTTAAGACA
Found at i:820474 original size:167 final size:167
Alignment explanation
Indices: 820024--820690 Score: 874
Period size: 168 Copynumber: 4.0 Consensus size: 167
820014 CACAAAAGAG
* ** * * *
820024 AAGAAGGAAATGAAGTACATCCTGCTCTTTGAGAACAAAGGAGAGAAGGAAATAAAGTACATCTT
1 AAGAAGGAAATGAAGTGCGCCCTGCTCTTTGAGAACAAAGGA-AAAAGGAAATAAAGTGCATCCT
* * *
820089 GCTCTTTGAAGACAAAGGGAAAAGAAGGAAATGAAATGTGCCCTGCTCTTTGAGGACAAAAGAAA
65 GCTCTTTGAGGACAAAGGGAAAAAAAGGAAATGAAATGTGTCCTGCTCTTTGAGGACAAAAGAAA
*
820154 AAAGGAAAAGGCAT-CATGTTCTTTGAGGACTAAAGGAA
130 AAAGGAAAAGGCATCCA-GCTCTTTGAGGACTAAAGGAA
* *
820192 AAGAATGAAATGAGGTGCGCCCTGCTCTTTGAGAACAAAGGAAAAAGGAAATAAAGTGCATCCTG
1 AAGAAGGAAATGAAGTGCGCCCTGCTCTTTGAGAACAAAGGAAAAAGGAAATAAAGTGCATCCTG
* *
820257 CTCTTTGAGAACAAAAGGAAAAAGAAGGAAATGAAATGTGTCCTGCTCTTTGAGGACAAAAGAAA
66 CTCTTTGAGGACAAAGGGAAAAA-AAGGAAATGAAATGTGTCCTGCTCTTTGAGGACAAAAGAAA
* *
820322 AAAAGAAAAGGCATCCAACTCTTTGAGGAC-AAAGGAA
130 AAAGGAAAAGGCATCCAGCTCTTTGAGGACTAAAGGAA
* * * * * *
820359 ATGAA-GAAAGTGAAGTGCGTCTTGCTCTTTGAGGATAAAGGAGAGAAGGAAATAAAGTGCATCC
1 AAGAAGGAAA-TGAAGTGCGCCCTGCTCTTTGAGAACAAAGGA-AAAAGGAAATAAAGTGCATCC
* * * *
820423 TCCTCTTTGAGGATAAAGGGAAAAAAAGGAAATGGAATGTGTCCTGCTCTTTGAGGACAAAAGAG
64 TGCTCTTTGAGGACAAAGGGAAAAAAAGGAAATGAAATGTGTCCTGCTCTTTGAGGACAAAAGAA
* * *
820488 AAAAGGAAAAGGCGTCCTGCTCTTTGAGGACTAAGGGAA
129 AAAAGGAAAAGGCATCCAGCTCTTTGAGGACTAAAGGAA
* **
820527 AAGAAGGAAAT-AAGGTGCGCCCTGCTCTTTGAGGACAAAGGAAAAAGGAAATAAAGTGTGTCCT
1 AAGAAGGAAATGAA-GTGCGCCCTGCTCTTTGAGAACAAAGGAAAAAGGAAATAAAGTGCATCCT
* * * * *
820591 ACTCTTTGAGGATAAACGGGAAAAGAAGGAAATGAAATGTGTCCTGCTCTTTGAGGACAAAGGAG
65 GCTCTTTGAGGACAAA-GGGAAAAAAAGGAAATGAAATGTGTCCTGCTCTTTGAGGACAAAAGAA
** **
820656 AAAAGGAAAAGGTGTCTTGCTCTTTGAGGACTAAA
129 AAAAGGAAAAGGCATCCAGCTCTTTGAGGACTAAA
820691 AGGTGCCACC
Statistics
Matches: 443, Mismatches: 48, Indels: 16
0.87 0.09 0.03
Matches are distributed among these distances:
166 4 0.01
167 178 0.40
168 255 0.58
169 6 0.01
ACGTcount: A:0.40, C:0.13, G:0.27, T:0.20
Consensus pattern (167 bp):
AAGAAGGAAATGAAGTGCGCCCTGCTCTTTGAGAACAAAGGAAAAAGGAAATAAAGTGCATCCTG
CTCTTTGAGGACAAAGGGAAAAAAAGGAAATGAAATGTGTCCTGCTCTTTGAGGACAAAAGAAAA
AAGGAAAAGGCATCCAGCTCTTTGAGGACTAAAGGAA
Found at i:820505 original size:38 final size:39
Alignment explanation
Indices: 819959--820686 Score: 376
Period size: 42 Copynumber: 17.4 Consensus size: 39
819949 AAATAGTGCA
* * *
819959 TCCTACTCTTGGAGGATAAAGG-AAAAAGGAAATGAAGTGTG
1 TCCTGCTCTTTGAGGACAAAGGAAAAAAGGAAA--AAG-GTG
* * * * * *
820000 TCCTGCTTTTTTAGCACAAAAGAGAAGAAGGAAATGAA-GTACA
1 TCCTGCTCTTTGAGGACAAAGGA-AAAAAGGAAA--AAGGT--G
* * * * *
820043 TCCTGCTCTTTGAGAACAAAGGAGAGAAGGAAATAAAGTACA
1 TCCTGCTCTTTGAGGACAAAGGAAAAAAGGAAA-AAGGT--G
* * *
820085 TCTTGCTCTTTGAAGACAAAGGGAAAAGAAGGAAATGAAATGTG
1 TCCTGCTCTTTGAGGACAAA-GGAAAA-AAGG-AA--AAAGGTG
* * **
820129 CCCTGCTCTTTGAGGACAAAAGAAAAAAGG-AAAAGGCA
1 TCCTGCTCTTTGAGGACAAAGGAAAAAAGGAAAAAGGTG
* * * *
820167 TCATGTTCTTTGAGGACTAAAGGAAAAGAATGAAATGAGGTGCG
1 TCCTGCTCTTTGAGGAC-AAAGGAAAA-AAGGAAA-AAGGT--G
* * *
820211 CCCTGCTCTTTGAGAACAAAGG-AAAAAGGAAATAAAGTG
1 TCCTGCTCTTTGAGGACAAAGGAAAAAAGGAAA-AAGGTG
* *
820250 CATCCTGCTCTTTGAGAACAAAAGGAAAAAGAAGGAAATGAAATGTG
1 --TCCTGCTCTTTGAGGAC-AAAGG-AAAA-AAGG-AA--AAAGGTG
* * **
820297 TCCTGCTCTTTGAGGACAAAAGAAAAAAAG-AAAAGGCA
1 TCCTGCTCTTTGAGGACAAAGGAAAAAAGGAAAAAGGTG
** * *
820335 TCCAACTCTTTGAGGACAAAGGAAATGAA-GAAAGTGAAGTGCG
1 TCCTGCTCTTTGAGGACAAAGGAAA-AAAGGAAA---AAG-GTG
* * * * *
820378 TCTTGCTCTTTGAGGATAAAGGAGAGAAGGAAATAAAGTG
1 TCCTGCTCTTTGAGGACAAAGGAAAAAAGGAAA-AAGGTG
* * *
820418 CATCCTCCTCTTTGAGGATAAAGGGAAAAAAAGGAAATGGAATGTG
1 --TCCTGCTCTTTGAGGACAAA-GG-AAAAAAGGAAA---AAGGTG
* * *
820464 TCCTGCTCTTTGAGGACAAAAGAGAAAAGG-AAAAGGCG
1 TCCTGCTCTTTGAGGACAAAGGAAAAAAGGAAAAAGGTG
*
820502 TCCTGCTCTTTGAGGACTAAGGGAAAAGAAGGAAATAAGGTGCG
1 TCCTGCTCTTTGAGGAC-AAAGGAAAA-AAGGAAA-AAGGT--G
*
820546 CCCTGCTCTTTGAGGACAAAGG-AAAAAGGAAATAAAGTGTG
1 TCCTGCTCTTTGAGGACAAAGGAAAAAAGG-AA-AAAG-GTG
* * *
820587 TCCTACTCTTTGAGGATAAACGGGAAAAGAAGGAAATGAAATGTG
1 TCCTGCTCTTTGAGGACAAA--GGAAAA-AAGG-AA--AAAGGTG
*
820632 TCCTGCTCTTTGAGGACAAAGGAGAAAAGG-AAAAGGTG
1 TCCTGCTCTTTGAGGACAAAGGAAAAAAGGAAAAAGGTG
*
820670 TCTTGCTCTTTGAGGAC
1 TCCTGCTCTTTGAGGAC
820687 TAAAAGGTGC
Statistics
Matches: 542, Mismatches: 93, Indels: 107
0.73 0.13 0.14
Matches are distributed among these distances:
38 88 0.16
39 19 0.04
40 12 0.02
41 75 0.14
42 96 0.18
43 93 0.17
44 88 0.16
45 50 0.09
46 14 0.03
47 6 0.01
48 1 0.00
ACGTcount: A:0.40, C:0.13, G:0.27, T:0.21
Consensus pattern (39 bp):
TCCTGCTCTTTGAGGACAAAGGAAAAAAGGAAAAAGGTG
Found at i:820681 original size:335 final size:334
Alignment explanation
Indices: 819959--820692 Score: 995
Period size: 335 Copynumber: 2.2 Consensus size: 334
819949 AAATAGTGCA
* * * * * *
819959 TCCTACTCTTGGAGGATAAAGGAAAAAGGAAATGAAGTGTGTCCTGCTTTTTTAGCACAAAAGAG
1 TCCTGCTCTTTGAGGACAAAGGAAAAAGG-AA--AAG-GTGTCCTGCTCTTTGAGGACAAAAGAG
*
820024 AAGAAGGAAATGAAGTACATCCTGCTCTTTGAGAACAAAGGAGAGAAGGAAATAAAGTACATCTT
62 AAGAAGGAAATGAAGTACATCCTGCTCTTTGAGAACAAAGGAGAGAAGGAAATAAAGTACATCCT
* *
820089 GCTCTTTGAAGACAAAGGGAAAAGAAGGAAATGAAATGTGCCCTGCTCTTTGAGGACAAAAGAAA
127 CCTCTTTGAAGACAAAGGGAAAAAAAGGAAATGAAATGTGCCCTGCTCTTTGAGGACAAAAGAAA
* * *
820154 AAAGGAAAAGGCATCATGTTCTTTGAGGACTAAAGGAAAAGAATGAAATGAGGTGCGCCCTGCTC
192 AAAGGAAAAGGCATCATGCTCTTTGAGGACTAAAGGAAAAGAAGGAAATAAGGTGCGCCCTGCTC
*
820219 TTTGAGAACAAAGGAAAAAGGAAATAAAGTGCATCCTGCTCTTTGAGAACAAAAGGAAAAAGAAG
257 TTTGAGAACAAAGGAAAAAGGAAATAAAGTGCATCCTACTCTTTGAGAACAAAAGGAAAAAGAAG
820284 GAAATGAAATGTG
322 GAAATGAAATGTG
* * ** ** *
820297 TCCTGCTCTTTGAGGACAAAAGAAAAAAAGAAAAGGCATCCAACTCTTTGAGGACAAAGGA-AAT
1 TCCTGCTCTTTGAGGAC-AAAGGAAAAAGGAAAAGGTGTCCTGCTCTTTGAGGACAAAAGAGAA-
* * * * * *
820361 GAA-GAAAGTGAAGTGCGTCTTGCTCTTTGAGGATAAAGGAGAGAAGGAAATAAAGTGCATCCTC
64 GAAGGAAA-TGAAGTACATCCTGCTCTTTGAGAACAAAGGAGAGAAGGAAATAAAGTACATCCTC
* * * * *
820425 CTCTTTGAGGATAAAGGGAAAAAAAGGAAATGGAATGTGTCCTGCTCTTTGAGGACAAAAGAGAA
128 CTCTTTGAAGACAAAGGGAAAAAAAGGAAATGAAATGTGCCCTGCTCTTTGAGGACAAAAGAAAA
* * *
820490 AAGGAAAAGGCGTCCTGCTCTTTGAGGACTAAGGGAAAAGAAGGAAATAAGGTGCGCCCTGCTCT
193 AAGGAAAAGGCATCATGCTCTTTGAGGACTAAAGGAAAAGAAGGAAATAAGGTGCGCCCTGCTCT
* ** * * * *
820555 TTGAGGACAAAGGAAAAAGGAAATAAAGTGTGTCCTACTCTTTGAGGATAAACGGGAAAAGAAGG
258 TTGAGAACAAAGGAAAAAGGAAATAAAGTGCATCCTACTCTTTGAGAACAAAAGGAAAAAGAAGG
820620 AAATGAAATGTG
323 AAATGAAATGTG
*
820632 TCCTGCTCTTTGAGGACAAAGGAGAAAAGGAAAAGGTGTCTTGCTCTTTGAGGACTAAAAG
1 TCCTGCTCTTTGAGGACAAAGGA-AAAAGGAAAAGGTGTCCTGCTCTTTGAGGAC-AAAAG
820693 GTGCCACCAA
Statistics
Matches: 342, Mismatches: 49, Indels: 12
0.85 0.12 0.03
Matches are distributed among these distances:
334 11 0.03
335 298 0.87
336 7 0.02
338 16 0.05
339 10 0.03
ACGTcount: A:0.40, C:0.13, G:0.26, T:0.21
Consensus pattern (334 bp):
TCCTGCTCTTTGAGGACAAAGGAAAAAGGAAAAGGTGTCCTGCTCTTTGAGGACAAAAGAGAAGA
AGGAAATGAAGTACATCCTGCTCTTTGAGAACAAAGGAGAGAAGGAAATAAAGTACATCCTCCTC
TTTGAAGACAAAGGGAAAAAAAGGAAATGAAATGTGCCCTGCTCTTTGAGGACAAAAGAAAAAAG
GAAAAGGCATCATGCTCTTTGAGGACTAAAGGAAAAGAAGGAAATAAGGTGCGCCCTGCTCTTTG
AGAACAAAGGAAAAAGGAAATAAAGTGCATCCTACTCTTTGAGAACAAAAGGAAAAAGAAGGAAA
TGAAATGTG
Found at i:821071 original size:182 final size:183
Alignment explanation
Indices: 820655--821182 Score: 738
Period size: 182 Copynumber: 2.9 Consensus size: 183
820645 GGACAAAGGA
* * *
820655 GAAAAGGAAAAGGTGTCTTGCTCTTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTAAA
1 GAAAAGAAAAAGGCGTCTTGCTCTTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTGAA
* * *
820720 AAG-AAAA-ATGCATCCTACTCTTTGAGGACTAAAAGGTGCCACCAACTCGTGTGAGCTTTAAAA
66 AAGAAAAAGATG--TCCTGCTCTTTGAGGACT-AAAGGTGCCACCAACTCGTGTGGGC-TTGAAA
* * * * *
820783 AGAAAAATACATCCTGCTCTTTGAGGATTAAAGGGTGCCACCAACTCGTGTGGGCTTT
127 AGAAAAAGACATCATACTCTTTGAGGACTAAA-GGTGCCACCAACTCGTATGGGCTTT
* * *
820841 GAAAAGAAAAAGGCATCTTGCTCTTTGAGGACTAAAGGGTGCCACCAACTCGTGCGGGCTTTGAA
1 GAAAAGAAAAAGGCGTCTTGCTCTTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTGAA
* *
820906 CAGAAAAAGATGTCCTGCTCTTTGAAGACTAAAGGTGCCACCAACTCGTGTGGGCTTGAAAAGAA
66 AAGAAAAAGATGTCCTGCTCTTTGAGGACTAAAGGTGCCACCAACTCGTGTGGGCTTGAAAAGAA
**
820971 AAAGATGTCATACTCTTTGAGGACTAAAGGTGCCACCAACTCGTATGGGC-TT
131 AAAGACATCATACTCTTTGAGGACTAAAGGTGCCACCAACTCGTATGGGCTTT
* *
821023 GAAAAGAAAAAGGCGTCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTCGTATGGGCTTTGAA
1 GAAAAGAAAAAGGCGTCTTGCTCTTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTGAA
** * * *
821088 AAGAAAAAGGCGCCCTGCTTTTTGAGGACTAAAGGTGCCACCAACTTGTGTGGGCTTGAAAAGAA
66 AAGAAAAAGATGTCCTGCTCTTTGAGGACTAAAGGTGCCACCAACTCGTGTGGGCTTGAAAAGAA
* * *
821153 AAAGGCATCTTCCTCTTTGAGGACTAAAGG
131 AAAGACATCATACTCTTTGAGGACTAAAGG
821183 GTGCTGTCGC
Statistics
Matches: 305, Mismatches: 35, Indels: 8
0.88 0.10 0.02
Matches are distributed among these distances:
182 145 0.48
183 21 0.07
184 31 0.10
185 24 0.08
186 77 0.25
187 4 0.01
188 3 0.01
ACGTcount: A:0.32, C:0.20, G:0.25, T:0.24
Consensus pattern (183 bp):
GAAAAGAAAAAGGCGTCTTGCTCTTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTGAA
AAGAAAAAGATGTCCTGCTCTTTGAGGACTAAAGGTGCCACCAACTCGTGTGGGCTTGAAAAGAA
AAAGACATCATACTCTTTGAGGACTAAAGGTGCCACCAACTCGTATGGGCTTT
Found at i:821174 original size:60 final size:61
Alignment explanation
Indices: 820655--821182 Score: 702
Period size: 62 Copynumber: 8.6 Consensus size: 61
820645 GGACAAAGGA
* * *
820655 GAAAAGGAAAAGGTGTCTTGCTCTTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTT
1 GAAAAGAAAAAGGCGTCCTGCTCTTTGAGGACT-AAAGGTGCCACCAACTCGTGTGGGCTTT
* * * * *
820717 AAAAAGAAAAATGCATCCTACTCTTTGAGGACTAAAAGGTGCCACCAACTCGTGTGAGCTTT
1 GAAAAGAAAAAGGCGTCCTGCTCTTTGAGGACT-AAAGGTGCCACCAACTCGTGTGGGCTTT
* ** * *
820779 AAAAAGAAAAATACATCCTGCTCTTTGAGGATTAAAGGGTGCCACCAACTCGTGTGGGCTTT
1 GAAAAGAAAAAGGCGTCCTGCTCTTTGAGGACTAAA-GGTGCCACCAACTCGTGTGGGCTTT
* * *
820841 GAAAAGAAAAAGGCATCTTGCTCTTTGAGGACTAAAGGGTGCCACCAACTCGTGCGGGCTTT
1 GAAAAGAAAAAGGCGTCCTGCTCTTTGAGGACTAAA-GGTGCCACCAACTCGTGTGGGCTTT
* ** *
820903 GAACAGAAAAAGATGTCCTGCTCTTTGAAGACTAAAGGTGCCACCAACTCGTGTGGGC-TT
1 GAAAAGAAAAAGGCGTCCTGCTCTTTGAGGACTAAAGGTGCCACCAACTCGTGTGGGCTTT
** * * *
820963 GAAAAGAAAAAGATGTCATACTCTTTGAGGACTAAAGGTGCCACCAACTCGTATGGGC-TT
1 GAAAAGAAAAAGGCGTCCTGCTCTTTGAGGACTAAAGGTGCCACCAACTCGTGTGGGCTTT
*
821023 GAAAAGAAAAAGGCGTCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTCGTATGGGCTTT
1 GAAAAGAAAAAGGCGTCCTGCTCTTTGAGGACT-AAAGGTGCCACCAACTCGTGTGGGCTTT
* * *
821085 GAAAAGAAAAAGGCGCCCTGCTTTTTGAGGACTAAAGGTGCCACCAACTTGTGTGGGC-TT
1 GAAAAGAAAAAGGCGTCCTGCTCTTTGAGGACTAAAGGTGCCACCAACTCGTGTGGGCTTT
* * *
821145 GAAAAGAAAAAGGCATCTTCCTCTTTGAGGACTAAAGG
1 GAAAAGAAAAAGGCGTCCTGCTCTTTGAGGACTAAAGG
821183 GTGCTGTCGC
Statistics
Matches: 420, Mismatches: 43, Indels: 8
0.89 0.09 0.02
Matches are distributed among these distances:
60 121 0.29
61 72 0.17
62 227 0.54
ACGTcount: A:0.32, C:0.20, G:0.25, T:0.24
Consensus pattern (61 bp):
GAAAAGAAAAAGGCGTCCTGCTCTTTGAGGACTAAAGGTGCCACCAACTCGTGTGGGCTTT
Found at i:824448 original size:20 final size:20
Alignment explanation
Indices: 824423--824497 Score: 89
Period size: 20 Copynumber: 3.8 Consensus size: 20
824413 GTAAAAAGAC
* *
824423 AGAATGTATTGATACATTGA
1 AGAATGTATCGATACATTAA
*
824443 AGAATGTATCGATACATTCAT
1 AGAATGTATCGATACATT-AA
*
824464 A-CATGTATCGATACATTAA
1 AGAATGTATCGATACATTAA
*
824483 AAAATGTATCGATAC
1 AGAATGTATCGATAC
824498 GTCTAGGTAA
Statistics
Matches: 47, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
19 2 0.04
20 44 0.94
21 1 0.02
ACGTcount: A:0.41, C:0.12, G:0.15, T:0.32
Consensus pattern (20 bp):
AGAATGTATCGATACATTAA
Found at i:825233 original size:48 final size:48
Alignment explanation
Indices: 825181--825380 Score: 226
Period size: 48 Copynumber: 4.2 Consensus size: 48
825171 CAATGTGCCA
* * * *
825181 ATTCAAGTCCAACGACATCGAGCTAAGGGAAAAGTGGAAAATGTGCTG
1 ATTCAAGGCCAACGACATTGAGCTAAGGGAAAAGTGGACAATATGCTG
* * * *
825229 ATTCAAGGCTAGCGACATTGAGCTAAGGGAAAAGTAGACACTATGCTG
1 ATTCAAGGCCAACGACATTGAGCTAAGGGAAAAGTGGACAATATGCTG
* * * *
825277 ATTTAAGGCCAATGACAGTGAGCTAAGGGAAAAGTGGACAATATGTTG
1 ATTCAAGGCCAACGACATTGAGCTAAGGGAAAAGTGGACAATATGCTG
* * * * *
825325 ATTCAAGGCCAGCGACATTGAGCTAA--TAAAGGT-GCCAATATGCTA
1 ATTCAAGGCCAACGACATTGAGCTAAGGGAAAAGTGGACAATATGCTG
825370 ATTCAAGGCCA
1 ATTCAAGGCCA
825381 GTGATATCGG
Statistics
Matches: 127, Mismatches: 25, Indels: 3
0.82 0.16 0.02
Matches are distributed among these distances:
45 20 0.16
46 5 0.04
48 102 0.80
ACGTcount: A:0.36, C:0.17, G:0.26, T:0.21
Consensus pattern (48 bp):
ATTCAAGGCCAACGACATTGAGCTAAGGGAAAAGTGGACAATATGCTG
Found at i:825506 original size:28 final size:28
Alignment explanation
Indices: 825456--826408 Score: 769
Period size: 28 Copynumber: 32.8 Consensus size: 28
825446 CTTCTAAAAA
* **
825456 AAAGG-TGCCACTAACTTATGTGGGCTGCG
1 AAAGGATGCCACTGAC-T-TGTGGGCTTTG
* *
825485 AAGGGGTGCCACTGACTTGTGGGCTTTG
1 AAAGGATGCCACTGACTTGTGGGCTTTG
*
825513 AAAAGAATTGCCA-TCGACTTGTGTAGGCTTTG
1 -AAAGGA-TGCCACT-GACTTGTG--GGCTTTG
*
825545 AAAGGGTGCCA-TCGACTTGTGGGCTTTG
1 AAAGGATGCCACT-GACTTGTGGGCTTTG
* **
825573 AAAGGGTATGCCACCGACTTGTGGGCTTCA
1 AAA-GG-ATGCCACTGACTTGTGGGCTTTG
* *
825603 AAAGGATGCCACTAACTTGTGGTCTTTTG
1 AAAGGATGCCACTGACTTGTGGGC-TTTG
825632 -AAGAGATGCCACTGACTTGTGGGCTTTG
1 AAAG-GATGCCACTGACTTGTGGGCTTTG
* *
825660 AAAAGAGTTGCCACCGACTTGTGTGGGCTTTG
1 -AAAG-GATGCCACTGAC-T-TGTGGGCTTTG
* **
825692 AAAGGGTGCCACTGACTTGTGGATTTTTG
1 AAAGGATGCCACTGACTTGTGG-GCTTTG
*
825721 -AAGATATGCCACTGACTTGTGGGCTTTG
1 AAAG-GATGCCACTGACTTGTGGGCTTTG
* * *
825749 AAAGGGTGCCACTGACTTGTAGACTTTG
1 AAAGGATGCCACTGACTTGTGGGCTTTG
* *
825777 AAAGAATGCCACTAACTTGTGGGCTTTG
1 AAAGGATGCCACTGACTTGTGGGCTTTG
*
825805 AAAAGATGCCA-TCGACTTGTGGGCTTTG
1 AAAGGATGCCACT-GACTTGTGGGCTTTG
*
825833 AAAAGGATGCCACCGACTTGTGGGCTTTG
1 -AAAGGATGCCACTGACTTGTGGGCTTTG
* *
825862 AAATGATGCCACCGACTTGTGGGCTTTG
1 AAAGGATGCCACTGACTTGTGGGCTTTG
*
825890 AAAGGATGCCACCGACTTGTGGGCTTTG
1 AAAGGATGCCACTGACTTGTGGGCTTTG
*
825918 AAAGGGTGCCACTGACTTGTGGGCTTTG
1 AAAGGATGCCACTGACTTGTGGGCTTTG
*
825946 AAAGGGTGCCACTGACTTGTGGGCTTTG
1 AAAGGATGCCACTGACTTGTGGGCTTTG
* * * * *
825974 AAAGGGTGACACTAATTTGTGAGCTTTG
1 AAAGGATGCCACTGACTTGTGGGCTTTG
* *
826002 AAATGGGTTACCA-TCGACTTGTGTGGGCTTTG
1 AAA--GGATGCCACT-GAC-T-TGTGGGCTTTG
*
826034 AGAAGGATGCCACTGACTTGTGGGCTTTA
1 A-AAGGATGCCACTGACTTGTGGGCTTTG
826063 AAAGGATGCCACTGACTTGTGGGCTTTG
1 AAAGGATGCCACTGACTTGTGGGCTTTG
* *
826091 AAATGGGTTGCCATTGACTTGTGTGGGCTTTG
1 AAA--GGATGCCACTGAC-T-TGTGGGCTTTG
*
826123 AAATGGGTTGCCA-TCGACTTGTGTGGGCTTTG
1 AAA--GGATGCCACT-GAC-T-TGTGGGCTTTG
* *
826155 AAATGGGTTGCCA-TCGACTTGTGTGGGCTTTC
1 AAA--GGATGCCACT-GAC-T-TGTGGGCTTTG
* * *
826187 AAATGAGTTACCACCGACTTGTGTGGTCTTTG
1 AAA-G-GATGCCACTGACTTGTG-GG-CTTTG
** * **
826219 AAATAATGCCACTAACTTGTGGGCTTAA
1 AAAGGATGCCACTGACTTGTGGGCTTTG
*
826247 AAAGGGGTGCCACTGACTTGTGGGCTTTG
1 AAA-GGATGCCACTGACTTGTGGGCTTTG
* * * **
826276 GAAGGGTACCACTGACTTGTGGGCTTAA
1 AAAGGATGCCACTGACTTGTGGGCTTTG
* *
826304 AAAGGATGCCAC-GAAGTTGTGGACTTTG
1 AAAGGATGCCACTG-ACTTGTGGGCTTTG
* * * **
826332 GAAGGGTGCCACTGACTTATGGGCTTAA
1 AAAGGATGCCACTGACTTGTGGGCTTTG
* * * *
826360 AAAAGATGCCAC-GAAGTTGTGGAC-TTA
1 AAAGGATGCCACTG-ACTTGTGGGCTTTG
* *
826387 AAAGGATGCCACGGAGTTGTGG
1 AAAGGATGCCACTGACTTGTGG
826409 ACTTAAAAGA
Statistics
Matches: 773, Mismatches: 109, Indels: 86
0.80 0.11 0.09
Matches are distributed among these distances:
27 24 0.03
28 367 0.47
29 118 0.15
30 116 0.15
31 25 0.03
32 121 0.16
33 2 0.00
ACGTcount: A:0.23, C:0.17, G:0.31, T:0.29
Consensus pattern (28 bp):
AAAGGATGCCACTGACTTGTGGGCTTTG
Found at i:826538 original size:28 final size:28
Alignment explanation
Indices: 826235--826637 Score: 370
Period size: 27 Copynumber: 14.6 Consensus size: 28
826225 TGCCACTAAC
* * * *
826235 TTGTGGGCTTAAAAAGGGGTGCCACTGAC
1 TTGTGGACTTTAAAA-GGGTGCCACGGAG
* ** * * *
826264 TTGTGGGCTTTGGAAGGGTACCACTGAC
1 TTGTGGACTTTAAAAGGGTGCCACGGAG
* * * *
826292 TTGTGGGCTTAAAAAGGATGCCACGAAG
1 TTGTGGACTTTAAAAGGGTGCCACGGAG
** * *
826320 TTGTGGACTTTGGAAGGGTGCCACTGAC
1 TTGTGGACTTTAAAAGGGTGCCACGGAG
* * * * * *
826348 TTATGGGCTTAAAAAAGATGCCACGAAG
1 TTGTGGACTTTAAAAGGGTGCCACGGAG
*
826376 TTGTGGAC-TTAAAAGGATGCCACGGAG
1 TTGTGGACTTTAAAAGGGTGCCACGGAG
* *
826403 TTGTGGAC-TTAAAAGAGTGCCACGAAG
1 TTGTGGACTTTAAAAGGGTGCCACGGAG
*
826430 TTGTAGAC-TTAAAAGGGTGCCACGGAG
1 TTGTGGACTTTAAAAGGGTGCCACGGAG
* * * *
826457 TTGTGGAATTT-CAAGGGTACCATGGAG
1 TTGTGGACTTTAAAAGGGTGCCACGGAG
* * *
826484 TTGTGGA-TTTAAAAGGATCCCATGGAG
1 TTGTGGACTTTAAAAGGGTGCCACGGAG
826511 TTGTGGACTTTAAAAGGGTGCCACGGAG
1 TTGTGGACTTTAAAAGGGTGCCACGGAG
* *
826539 TTGTGGACTTTAAAAGGATACCACGGAG
1 TTGTGGACTTTAAAAGGGTGCCACGGAG
*
826567 TTGTGGAC-TTAAAAGGGTGCCATGGAG
1 TTGTGGACTTTAAAAGGGTGCCACGGAG
* *
826594 TTGTGGAC-TTAAAAGGATGCCACAGAG
1 TTGTGGACTTTAAAAGGGTGCCACGGAG
* *
826621 TTGTGAACTTAAAAAGG
1 TTGTGGACTTTAAAAGG
826638 TGCTGTCGGG
Statistics
Matches: 308, Mismatches: 62, Indels: 9
0.81 0.16 0.02
Matches are distributed among these distances:
26 3 0.01
27 157 0.51
28 136 0.44
29 12 0.04
ACGTcount: A:0.29, C:0.14, G:0.32, T:0.25
Consensus pattern (28 bp):
TTGTGGACTTTAAAAGGGTGCCACGGAG
Found at i:826633 original size:191 final size:192
Alignment explanation
Indices: 826277--826640 Score: 486
Period size: 191 Copynumber: 1.9 Consensus size: 192
826267 TGGGCTTTGG
* * **
826277 AAGGGTACCACTGACTTGTGGGCTTAAAAAGGATGCCACGAAGTTGTGGACTTTGGAAGGGTGCC
1 AAGGGTACCACTGACTTGTGGGATTAAAAAGGATCCCACGAAGTTGTGGACTTTAAAAGGGTGCC
* * *
826342 ACTGACTTATGGGCTTAAAAAAGATGCCACGAAGTTGTGGACTTAAAAGGATGCCACGGAGTTGT
66 ACGGACTTATGGACTTAAAAAAGATACCACGAAGTTGTGGACTTAAAAGGATGCCACGGAGTTGT
*
826407 GGACTTAAAAGAGTGCCACGAAGTTGTAGACTTAAAAGGGTGCCACGGAGTTGTGGAATTTC
131 GGACTTAAAAGAGTGCCACGAAGTTGTAGACTTAAAAAGGTGCCACGGAGTTGTGGAATTTC
* * * *
826469 AAGGGTACCA-TGGAGTTGT-GGATTTAAAAGGATCCCATGGAGTTGTGGACTTTAAAAGGGTGC
1 AAGGGTACCACT-GACTTGTGGGATTAAAAAGGATCCCACGAAGTTGTGGACTTTAAAAGGGTGC
* * * * * * *
826532 CACGGAGTTGTGGACTTTAAAAGGATACCACGGAGTTGTGGACTTAAAAGGGTGCCATGGAGTTG
65 CACGGACTTATGGACTTAAAAAAGATACCACGAAGTTGTGGACTTAAAAGGATGCCACGGAGTTG
826597 TGGACTTAAAAG-GATGCCAC-AGAGTTGT-GAACTTAAAAAGGTGC
130 TGGACTTAAAAGAG-TGCCACGA-AGTTGTAG-ACTTAAAAAGGTGC
826641 TGTCGGGACG
Statistics
Matches: 149, Mismatches: 19, Indels: 9
0.84 0.11 0.05
Matches are distributed among these distances:
190 3 0.02
191 130 0.87
192 16 0.11
ACGTcount: A:0.30, C:0.14, G:0.31, T:0.24
Consensus pattern (192 bp):
AAGGGTACCACTGACTTGTGGGATTAAAAAGGATCCCACGAAGTTGTGGACTTTAAAAGGGTGCC
ACGGACTTATGGACTTAAAAAAGATACCACGAAGTTGTGGACTTAAAAGGATGCCACGGAGTTGT
GGACTTAAAAGAGTGCCACGAAGTTGTAGACTTAAAAAGGTGCCACGGAGTTGTGGAATTTC
Found at i:827713 original size:79 final size:79
Alignment explanation
Indices: 827612--827816 Score: 322
Period size: 79 Copynumber: 2.6 Consensus size: 79
827602 AGATAATAAC
*
827612 GGGTTGGAGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCCCGATTGCGAGAAATCAATATTT
1 GGGTTGGAGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCCCGATTGCAAGAAATCAATATTT
827677 TAGGAATAAAG-CTG
66 TAGGAATAAAGTC-G
* * * *
827691 GGGTTGGAGTATCCCTTTGAAAATAATGGGGTTGGAGTATCCCCGATTGTAAGAAATCAATATTT
1 GGGTTGGAGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCCCGATTGCAAGAAATCAATATTT
827756 TAGGAATAAAGTCG
66 TAGGAATAAAGTCG
* * *
827770 GGGTTGGAGTATCCCCTCGGAAGTGACGGGGTTGGAGTATCCCCGAT
1 GGGTTGGAGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCCCGAT
827817 GATTAACGGG
Statistics
Matches: 114, Mismatches: 11, Indels: 2
0.90 0.09 0.02
Matches are distributed among these distances:
79 113 0.99
80 1 0.01
ACGTcount: A:0.28, C:0.16, G:0.30, T:0.27
Consensus pattern (79 bp):
GGGTTGGAGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCCCGATTGCAAGAAATCAATATTT
TAGGAATAAAGTCG
Found at i:827833 original size:27 final size:28
Alignment explanation
Indices: 827768--827843 Score: 100
Period size: 27 Copynumber: 2.8 Consensus size: 28
827758 GGAATAAAGT
*** *
827768 CGGGGTTGGAGTATCCCCTCGGAAGTGA
1 CGGGGTTGGAGTATCCCCGATGAAGTAA
*
827796 CGGGGTTGGAGTATCCCCGATG-ATTAA
1 CGGGGTTGGAGTATCCCCGATGAAGTAA
827823 CGGGGTTGGAGTATCCCCGAT
1 CGGGGTTGGAGTATCCCCGAT
827844 TGTGAAAAAT
Statistics
Matches: 43, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
27 24 0.56
28 19 0.44
ACGTcount: A:0.18, C:0.21, G:0.37, T:0.24
Consensus pattern (28 bp):
CGGGGTTGGAGTATCCCCGATGAAGTAA
Found at i:830282 original size:21 final size:21
Alignment explanation
Indices: 830258--830299 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
830248 GTATCGATAC
830258 AATGTATCAATACATTTCCTT
1 AATGTATCAATACATTTCCTT
*
830279 AATGTATCGATACATTTCCTT
1 AATGTATCAATACATTTCCTT
830300 GGCAGTAGCT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.31, C:0.19, G:0.07, T:0.43
Consensus pattern (21 bp):
AATGTATCAATACATTTCCTT
Found at i:830334 original size:13 final size:13
Alignment explanation
Indices: 830316--830367 Score: 50
Period size: 13 Copynumber: 3.5 Consensus size: 13
830306 AGCTTCGTAG
830316 CGATACATTGTAT
1 CGATACATTGTAT
830329 CGATACAAAACTTATGTAT
1 CGATAC---A-TT--GTAT
830348 CGATACATTGTAT
1 CGATACATTGTAT
830361 CGATACA
1 CGATACA
830368 ACACTTATGT
Statistics
Matches: 33, Mismatches: 0, Indels: 12
0.73 0.00 0.27
Matches are distributed among these distances:
13 17 0.52
15 2 0.06
16 2 0.06
17 2 0.06
19 10 0.30
ACGTcount: A:0.37, C:0.17, G:0.13, T:0.33
Consensus pattern (13 bp):
CGATACATTGTAT
Found at i:830348 original size:19 final size:18
Alignment explanation
Indices: 830324--830386 Score: 73
Period size: 19 Copynumber: 3.7 Consensus size: 18
830314 AGCGATACAT
830324 TGTATCGATACAAAACTTA
1 TGTATCGATAC-AAACTTA
830343 TGTATCGATAC--A--T-
1 TGTATCGATACAAACTTA
830356 TGTATCGATACAACACTTA
1 TGTATCGATACAA-ACTTA
830375 TGTATCGATACA
1 TGTATCGATACA
830387 TTTTCTGTTT
Statistics
Matches: 38, Mismatches: 0, Indels: 12
0.76 0.00 0.24
Matches are distributed among these distances:
13 11 0.29
14 1 0.03
16 2 0.05
18 1 0.03
19 23 0.61
ACGTcount: A:0.37, C:0.17, G:0.13, T:0.33
Consensus pattern (18 bp):
TGTATCGATACAAACTTA
Found at i:830357 original size:32 final size:32
Alignment explanation
Indices: 830316--830388 Score: 137
Period size: 32 Copynumber: 2.3 Consensus size: 32
830306 AGCTTCGTAG
830316 CGATACATTGTATCGATACAAAACTTATGTAT
1 CGATACATTGTATCGATACAAAACTTATGTAT
*
830348 CGATACATTGTATCGATACAACACTTATGTAT
1 CGATACATTGTATCGATACAAAACTTATGTAT
830380 CGATACATT
1 CGATACATT
830389 TTCTGTTTGT
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
32 40 1.00
ACGTcount: A:0.36, C:0.18, G:0.12, T:0.34
Consensus pattern (32 bp):
CGATACATTGTATCGATACAAAACTTATGTAT
Found at i:830416 original size:19 final size:19
Alignment explanation
Indices: 830355--830416 Score: 54
Period size: 19 Copynumber: 3.2 Consensus size: 19
830345 TATCGATACA
*
830355 TTGTATCGATACAACACT-T
1 TTGTATCGATACAA-ATTGT
* **
830374 ATGTATCGATACATTTTCTGT
1 TTGTATCGATACA-AAT-TGT
830395 TTGTATCGATACAAATTGT
1 TTGTATCGATACAAATTGT
830414 TTG
1 TTG
830417 AAATTCAAAA
Statistics
Matches: 33, Mismatches: 7, Indels: 6
0.72 0.15 0.13
Matches are distributed among these distances:
19 18 0.55
20 2 0.06
21 13 0.39
ACGTcount: A:0.27, C:0.15, G:0.15, T:0.44
Consensus pattern (19 bp):
TTGTATCGATACAAATTGT
Found at i:831200 original size:42 final size:41
Alignment explanation
Indices: 831110--831345 Score: 235
Period size: 42 Copynumber: 5.5 Consensus size: 41
831100 AAAAAGAATA
* *
831110 CGTCCTGCT-TTTCGAGGA-AAAAGGAAAAAAGGGAAAACAAAATG
1 CGTCCTGCTCTTT-GAGGACAAAA-G--AAAA-GGAAAATAAAGTG
831154 CGTCCTGCTCTTTGAGGACAAAAGAAAGAGGAAAATAAAGTG
1 CGTCCTGCTCTTTGAGGACAAAAGAAA-AGGAAAATAAAGTG
* * * *
831196 CGTCCTGCTCTTTGAAGACTAGAAGGGAAAAGAAAGAAATAAAGAG
1 CGTCCTGCTCTTTGAGGAC-A-AA-AGAAAAG-GA-AAATAAAGTG
*
831242 CGTCCTGCTCTTTGAGGACAAAGGAGAAAAGGAAAACGAAA-TG
1 CGTCCTGCTCTTTGAGGACAAA--AGAAAAGGAAAA-TAAAGTG
*
831285 CGTCATGCTCTTTGAGGACAAAAGAAAGAGGAAAATAAAGTG
1 CGTCCTGCTCTTTGAGGACAAAAGAAA-AGGAAAATAAAGTG
*
831327 CGTCCTACTCTTTGAGGAC
1 CGTCCTGCTCTTTGAGGAC
831346 TACAAAGTGC
Statistics
Matches: 165, Mismatches: 15, Indels: 26
0.80 0.07 0.13
Matches are distributed among these distances:
41 8 0.05
42 58 0.35
43 27 0.16
44 25 0.15
45 20 0.12
46 27 0.16
ACGTcount: A:0.40, C:0.15, G:0.26, T:0.19
Consensus pattern (41 bp):
CGTCCTGCTCTTTGAGGACAAAAGAAAAGGAAAATAAAGTG
Found at i:831245 original size:46 final size:45
Alignment explanation
Indices: 831186--831341 Score: 137
Period size: 46 Copynumber: 3.6 Consensus size: 45
831176 AGAAAGAGGA
*
831186 AAATAAAGTGCGTCCTGCTCTTTGAAGACTAGAAGG-GAAAAGAAAG
1 AAATAAAGAGCGTCCTGCTCTTTGAAGAC-A-AAGGAGAAAAGAAAG
* *
831232 AAATAAAGAGCGTCCTGCTCTTTGAGGACAAAGGAGAAAAGGAA-
1 AAATAAAGAGCGTCCTGCTCTTTGAAGACAAAGGAGAAAAGAAAG
** * * * *
831276 AACGAAA-TGCGTCATGCTCTTTGAGGACAAA--AG-AAAG-AGG
1 AAATAAAGAGCGTCCTGCTCTTTGAAGACAAAGGAGAAAAGAAAG
* *
831316 AAAATAAAGTGCGTCCTACTCTTTGA
1 -AAATAAAGAGCGTCCTGCTCTTTGA
831342 GGACTACAAA
Statistics
Matches: 94, Mismatches: 12, Indels: 12
0.80 0.10 0.10
Matches are distributed among these distances:
39 1 0.01
40 4 0.04
41 7 0.07
42 15 0.16
43 22 0.23
44 9 0.10
45 9 0.10
46 27 0.29
ACGTcount: A:0.40, C:0.15, G:0.25, T:0.20
Consensus pattern (45 bp):
AAATAAAGAGCGTCCTGCTCTTTGAAGACAAAGGAGAAAAGAAAG
Found at i:831309 original size:131 final size:132
Alignment explanation
Indices: 831110--831347 Score: 399
Period size: 131 Copynumber: 1.8 Consensus size: 132
831100 AAAAAGAATA
*
831110 CGTCCTGCTTTTCGAGGAAAAAGGAAAAAAGGGAAAACAAAATGCGTCCTGCTCTTTGAGGACAA
1 CGTCCTGCTTTTCGAGGAAAAAGGAAAAAAGGGAAAACAAAATGCGTCATGCTCTTTGAGGACAA
*
831175 AAGAAAGAGGAAAATAAAGTGCGTCCTGCTCTTTGAAGACTAGAAGGGAAAAGAAAGAAATAAAG
66 AAGAAAGAGGAAAATAAAGTGCGTCCTACTCTTTGAAGACTAGAAGGGAAAAGAAAGAAATAAAG
831240 AG
131 AG
* * *
831242 CGTCCTGCTCTTT-GAGGACAAAGGAGAAAA-GGAAAACGAAATGCGTCATGCTCTTTGAGGACA
1 CGTCCTGCT-TTTCGAGGAAAAAGGAAAAAAGGGAAAACAAAATGCGTCATGCTCTTTGAGGACA
*
831305 AAAGAAAGAGGAAAATAAAGTGCGTCCTACTCTTTGAGGACTA
65 AAAGAAAGAGGAAAATAAAGTGCGTCCTACTCTTTGAAGACTA
831348 CAAAGTGCCA
Statistics
Matches: 99, Mismatches: 6, Indels: 3
0.92 0.06 0.03
Matches are distributed among these distances:
131 72 0.73
132 24 0.24
133 3 0.03
ACGTcount: A:0.40, C:0.15, G:0.26, T:0.19
Consensus pattern (132 bp):
CGTCCTGCTTTTCGAGGAAAAAGGAAAAAAGGGAAAACAAAATGCGTCATGCTCTTTGAGGACAA
AAGAAAGAGGAAAATAAAGTGCGTCCTACTCTTTGAAGACTAGAAGGGAAAAGAAAGAAATAAAG
AG
Found at i:831423 original size:62 final size:58
Alignment explanation
Indices: 831321--831526 Score: 246
Period size: 55 Copynumber: 3.6 Consensus size: 58
831311 AGAGGAAAAT
* * *
831321 AAAGTGCGTCCTACTCTTTGAGGACTACAAAGTGCCACCAACTTGTGTGGGCTTTGAAAAGAA
1 AAAG-GCGTCCTGCTCTTTGAGGACTAGAAGGTGCCACCAACTTGTGTGGGCTTTG---A-AA
* *
831384 AAAGGCGTCCTGCTCTTTGAGGACTAGAGGGTGCCACCAACTCGTGTGGGCTTT---A
1 AAAGGCGTCCTGCTCTTTGAGGACTAGAAGGTGCCACCAACTTGTGTGGGCTTTGAAA
831439 AAAGGCGTCCTGCTCTTTGAGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTTG---
1 AAAGGCGTCCTGCTCTTTGAGGACTAG-AAGGTGCCACCAACTTGTGTGGGCTTTGAAA
* *
831494 AACGGCGTCCTGCTCTTTGAGGACTAAAAGGTG
1 AAAGGCGTCCTGCTCTTTGAGGACTAGAAGGTG
831527 AAAAGAGAGA
Statistics
Matches: 131, Mismatches: 9, Indels: 14
0.85 0.06 0.09
Matches are distributed among these distances:
54 1 0.01
55 81 0.62
62 45 0.34
63 4 0.03
ACGTcount: A:0.24, C:0.22, G:0.29, T:0.26
Consensus pattern (58 bp):
AAAGGCGTCCTGCTCTTTGAGGACTAGAAGGTGCCACCAACTTGTGTGGGCTTTGAAA
Found at i:831638 original size:210 final size:210
Alignment explanation
Indices: 831334--831735 Score: 630
Period size: 210 Copynumber: 1.9 Consensus size: 210
831324 GTGCGTCCTA
*
831334 CTCTTTGAGGACTACAAAGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGGCGTCCTGCTC
1 CTCTTTGAGGACTACAAAGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGGCATCCTGCTC
* *
831399 TTTGAGGACTAGAGGGTGCCACCAACTCGTGTGGGCTTTAAAAGGCGTCCTGCTCTTTGAGGACT
66 TTTGAGGACTAGAGAGTGCCACCAACTCGTGTGGGCTTTAAAAGGCGTCCTACTCTTTGAGGACT
* * * * * *
831464 -GAAAGGTGCCACCAACTTGTGTGGGCTTTGAACGGCGTCCTGCTCTTTGAGGACTAAAAGGTGA
131 GGAAA-ATGCCACAAACTCGTGTGGGCTTTAAAAGGCGTCCTACTCTTTGAGGACT-AAAGGTGA
831528 AAAGAGAGAGCATCTTG
194 AAAGAGAGAGCATCTTG
* * *
831545 CTCTTTGAGGACTAGAAGGTGCCACCAACTTGTGTGGGCTTT-AAAAGGAAAAGGCATCCTGCTC
1 CTCTTTGAGGACTACAAAGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGGCATCCTGCTC
* *
831609 TTTGAGGA-TTGAGAAGTGCCACCAACTCGTGTGGGCTTTGAAAGGCGTCCTACTCTTTGAGGAC
66 TTTGAGGACTAGAG-AGTGCCACCAACTCGTGTGGGCTTTAAAAGGCGTCCTACTCTTTGAGGAC
831673 TGGAAAATGCCACAAACTCGTGTGGGCTTTAAAAGGCGTCCTACTCTTTGAGGACTAAAGGTG
130 TGGAAAATGCCACAAACTCGTGTGGGCTTTAAAAGGCGTCCTACTCTTTGAGGACTAAAGGTG
831736 CCACCAACTT
Statistics
Matches: 175, Mismatches: 14, Indels: 6
0.90 0.07 0.03
Matches are distributed among these distances:
209 11 0.06
210 120 0.69
211 44 0.25
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (210 bp):
CTCTTTGAGGACTACAAAGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGGCATCCTGCTC
TTTGAGGACTAGAGAGTGCCACCAACTCGTGTGGGCTTTAAAAGGCGTCCTACTCTTTGAGGACT
GGAAAATGCCACAAACTCGTGTGGGCTTTAAAAGGCGTCCTACTCTTTGAGGACTAAAGGTGAAA
AGAGAGAGCATCTTG
Found at i:831684 original size:55 final size:55
Alignment explanation
Indices: 831543--831836 Score: 351
Period size: 55 Copynumber: 5.3 Consensus size: 55
831533 GAGAGCATCT
* * * *
831543 TGCTCTTTGAGGACTAGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCATCC
1 TGCTCTTTGAGGACTGGAAAGTGCCACCAACTCGTGTGGGCTTT------AAAAGGCGTCC
* *
831604 TGCTCTTTGAGGA-TTGAGAAGTGCCACCAACTCGTGTGGGCTTTGAAAGGCGTCC
1 TGCTCTTTGAGGACTGGA-AAGTGCCACCAACTCGTGTGGGCTTTAAAAGGCGTCC
* * *
831659 TACTCTTTGAGGACTGGAAAATGCCACAAACTCGTGTGGGCTTTAAAAGGCGTCC
1 TGCTCTTTGAGGACTGGAAAGTGCCACCAACTCGTGTGGGCTTTAAAAGGCGTCC
* * *
831714 TACTCTTTGAGGACT--AAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGACGTCC
1 TGCTCTTTGAGGACTGGAAA-GTGCCACCAACTCGTGTGGGCTTTAAAAGGCGTCC
* ** *
831768 TGCTCTTTGAAGACTGGAGGGTGCCACCAACTCGTGTGGGCTTCAAAAGGCGTCC
1 TGCTCTTTGAGGACTGGAAAGTGCCACCAACTCGTGTGGGCTTTAAAAGGCGTCC
831823 TGCTCTTTGAGGAC
1 TGCTCTTTGAGGAC
831837 AAAAAGGCGA
Statistics
Matches: 206, Mismatches: 22, Indels: 16
0.84 0.09 0.07
Matches are distributed among these distances:
53 3 0.01
54 44 0.21
55 115 0.56
56 4 0.02
60 3 0.01
61 37 0.18
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (55 bp):
TGCTCTTTGAGGACTGGAAAGTGCCACCAACTCGTGTGGGCTTTAAAAGGCGTCC
Found at i:831718 original size:27 final size:27
Alignment explanation
Indices: 831633--831718 Score: 66
Period size: 27 Copynumber: 3.1 Consensus size: 27
831623 AGTGCCACCA
*
831633 ACTCGTGTGGGCTTTGAAAGGCGTCCT
1 ACTCGTGTGGGCTTTAAAAGGCGTCCT
* ** * ** **
831660 ACTC-TTTGAGGACTGGAAAATGCCACAA
1 ACTCGTGTG-GG-CTTTAAAAGGCGTCCT
831688 ACTCGTGTGGGCTTTAAAAGGCGTCCT
1 ACTCGTGTGGGCTTTAAAAGGCGTCCT
831715 ACTC
1 ACTC
831719 TTTGAGGACT
Statistics
Matches: 39, Mismatches: 17, Indels: 6
0.63 0.27 0.10
Matches are distributed among these distances:
26 3 0.08
27 19 0.49
28 14 0.36
29 3 0.08
ACGTcount: A:0.23, C:0.23, G:0.27, T:0.27
Consensus pattern (27 bp):
ACTCGTGTGGGCTTTAAAAGGCGTCCT
Found at i:831776 original size:109 final size:110
Alignment explanation
Indices: 831543--831836 Score: 376
Period size: 109 Copynumber: 2.6 Consensus size: 110
831533 GAGAGCATCT
* * *
831543 TGCTCTTTGAGGACTAGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCATCCTGCT
1 TGCTCTTTGAGGACTGGAAGGTGCCACCAACTCGTGTGGGCTTT------AAAAGGCGTCCTGCT
* * *
831608 CTTTGAGGATTGAGAAGTGCCACCAACTCGTGTGGGCTTTGAAAGGCGTCC
60 CTTTGAGGACTGAGAAGTGCCACCAACTCGTGTGGGCTTTAAAAGACGTCC
* ** * *
831659 TACTCTTTGAGGACTGGAAAATGCCACAAACTCGTGTGGGCTTTAAAAGGCGTCCTACTCTTTGA
1 TGCTCTTTGAGGACTGGAAGGTGCCACCAACTCGTGTGGGCTTTAAAAGGCGTCCTGCTCTTTGA
*
831724 GGACT-A-AAGGTGCCACCAACTTGTGTGGGCTTTAAAAGACGTCC
66 GGACTGAGAA-GTGCCACCAACTCGTGTGGGCTTTAAAAGACGTCC
* * *
831768 TGCTCTTTGAAGACTGGAGGGTGCCACCAACTCGTGTGGGCTTCAAAAGGCGTCCTGCTCTTTGA
1 TGCTCTTTGAGGACTGGAAGGTGCCACCAACTCGTGTGGGCTTTAAAAGGCGTCCTGCTCTTTGA
831833 GGAC
66 GGAC
831837 AAAAAGGCGA
Statistics
Matches: 157, Mismatches: 20, Indels: 9
0.84 0.11 0.05
Matches are distributed among these distances:
108 2 0.01
109 94 0.60
110 23 0.15
116 38 0.24
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (110 bp):
TGCTCTTTGAGGACTGGAAGGTGCCACCAACTCGTGTGGGCTTTAAAAGGCGTCCTGCTCTTTGA
GGACTGAGAAGTGCCACCAACTCGTGTGGGCTTTAAAAGACGTCC
Found at i:831856 original size:319 final size:320
Alignment explanation
Indices: 831320--832476 Score: 1084
Period size: 319 Copynumber: 3.5 Consensus size: 320
831310 AAGAGGAAAA
** * * *
831320 TAAAGTGCGTCCTACTCTTTGAGGACTACAAAGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAA
1 TAAAG-GCGTCCTACTCTTTGAGGACTGGAAAATGCCACAAAC-CGTGTGGGCTTT------AAA
* *
831385 AAGGCGTCCTGCTCTTTGAGGACTAGAGGGTGCCACCAACTCGTGTGGGCTTT-AAAAG--GCGT
58 AAGGCGTCCTACTCTTTGAGGACTA-AAGGTGCCACCAACTCGTGTGGGCTTTAAAAAGAAGCGT
* * * *
831447 CCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAACGGCGTCCTGCTCTTT
122 CCTGCTCTTTGAAGACTGGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGCGTCCTGCTCTTT
* * *
831512 GAGGACTAAAAGGTGAAAAGAGAGAGCATCTTGCTCTTTGAGGACTAGAAGGTGCCACCAACTTG
187 GAGGACAAAAAGGCGAAAAGAGAGAGCATCCTGCTCTTTGAGGACTAGAA-GTGCCACCAACTTG
*
831577 TGTGGGCTTTAAAAGGAAAAGGCATCCTGCTCTTTGAGGATTGAGAAGTGCCACCAACTCGTGTG
251 TGTGGGCTTTAAAAGGAAAAGGCATCCTGCTCTTTGAGGATTGAGAAGTGCCACCAACTTGTGTG
831642 GGCTT
316 GGCTT
831647 TGAAAGGCGTCCTACTCTTTGAGGACTGGAAAATGCCACAAACTCGTGTGGGCTTT-AAAAGGCG
1 T-AAAGGCGTCCTACTCTTTGAGGACTGGAAAATGCCACAAAC-CGTGTGGGCTTTAAAAAGGCG
*
831711 TCCTACTCTTTGAGGACTAAAGGTGCCACCAACTTGTGTGGGCTTT-AAAAG-A-CGTCCTGCTC
64 TCCTACTCTTTGAGGACTAAAGGTGCCACCAACTCGTGTGGGCTTTAAAAAGAAGCGTCCTGCTC
* * *
831773 TTTGAAGACTGGAGGGTGCCACCAACTCGTGTGGGCTTCAAAAGGCGTCCTGCTCTTTGAGGACA
129 TTTGAAGACTGGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGCGTCCTGCTCTTTGAGGACA
* *
831838 AAAAGGCGAAAGGAGAGAGCGTCCTGCTCTTTGAGGACTAGGAAGTGCCACCAACTTGTGTGGGC
194 AAAAGGCGAAAAGAGAGAGCATCCTGCTCTTTGAGGACTA-GAAGTGCCACCAACTTGTGTGGGC
* * *
831903 TTTAAAAGGAGAAGGCATCCTGCTCTTTGAGGATTGA-AGGTGCCACCAGCTTGTGTGGGCTT
258 TTTAAAAGGAAAAGGCATCCTGCTCTTTGAGGATTGAGAAGTGCCACCAACTTGTGTGGGCTT
* * * * *
831965 TAAAAGGCATCCTACTCTTTGAGGAC---AAAAAGGC-GAAA--G-GAGGG--------A-GCGT
1 T-AAAGGCGTCCTACTCTTTGAGGACTGGAAAATGCCACAAACCGTGTGGGCTTTAAAAAGGCGT
* * * *
832014 CCTGCTCTTTGAGGACTAAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAGGCATCCTG
65 CCTACTCTTTGAGGACT-AAAGGTGCCACCAACTCGTGTGGGCTTTAAAA--AGAA-GCGTCCTG
* * **
832079 CTCTTTGAGGATTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGAAAAGGCGT-CTAGCTCT
126 CTCTTTGAAGACTGGAAGGTGCCACCAACTTGTGTGGGCTTT-----AAAAGGCGTCCT-GCTCT
* *
832143 TTGAGGACTGAAAAATACCACCCACTTGTGTGGGCTTTGAAAAGAAAAAGCATCCTGCTCTTTGA
185 TTGAGGAC-----AA-A--A---A--------GGC---GAAAAGAGAGAGCATCCTGCTCTTTGA
** * * * *
832208 GGGTTGGAAAATGCCACCAACTTGTGTGGGCTTT------AAAAGGCGTCCTGCTCTTTGAGGAC
228 GGACTAG-AAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCATCCTGCTCTTTGAGGAT
* *
832267 TG-GAAAATGCCACTAACTTGTGTGGGCTT
292 TGAG-AAGTGCCACCAACTTGTGTGGGCTT
* * *
832296 TAAGAGGTGTCCTGCTCTTTGAGGACTGGAAAATGCCACCAACCTGTGTGGGCTTTAAAAAGAAG
1 TAA-AGGCGTCCTACTCTTTGAGGACTGGAAAATGCCACAAACC-GTGTGGGCTTT---AA-AA-
* *
832361 AGGTGTCCTACTCTTTGAGGACTAAAGGTGCCACCAACTCGTGTGGGCTTTAAAAAGAAAAAGGT
59 AGGCGTCCTACTCTTTGAGGACTAAAGGTGCCACCAACTCGTGTGGGCTTTAAAAAG---AA-GC
832426 GTCCTGCTCTTTGAAGACTGG-AGGTGCCACCAACTTGTGTGGGCTTTAAAA
120 GTCCTGCTCTTTGAAGACTGGAAGGTGCCACCAACTTGTGTGGGCTTTAAAA
832477 AGAAAAAAAA
Statistics
Matches: 690, Mismatches: 73, Indels: 114
0.79 0.08 0.13
Matches are distributed among these distances:
302 20 0.03
303 28 0.04
304 3 0.00
306 2 0.00
307 1 0.00
309 41 0.06
310 4 0.01
311 1 0.00
313 2 0.00
314 25 0.04
315 6 0.01
318 46 0.07
319 192 0.28
320 30 0.04
322 1 0.00
325 1 0.00
327 46 0.07
328 4 0.01
330 26 0.04
331 41 0.06
333 3 0.00
334 6 0.01
335 3 0.00
336 51 0.07
338 1 0.00
339 4 0.01
347 4 0.01
350 2 0.00
352 55 0.08
353 41 0.06
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.25
Consensus pattern (320 bp):
TAAAGGCGTCCTACTCTTTGAGGACTGGAAAATGCCACAAACCGTGTGGGCTTTAAAAAGGCGTC
CTACTCTTTGAGGACTAAAGGTGCCACCAACTCGTGTGGGCTTTAAAAAGAAGCGTCCTGCTCTT
TGAAGACTGGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGCGTCCTGCTCTTTGAGGACAAA
AAGGCGAAAAGAGAGAGCATCCTGCTCTTTGAGGACTAGAAGTGCCACCAACTTGTGTGGGCTTT
AAAAGGAAAAGGCATCCTGCTCTTTGAGGATTGAGAAGTGCCACCAACTTGTGTGGGCTT
Found at i:831966 original size:60 final size:61
Alignment explanation
Indices: 831846--831971 Score: 186
Period size: 60 Copynumber: 2.1 Consensus size: 61
831836 CAAAAAGGCG
*
831846 AAAGGAGAGAGCGTCCTGCTCTTTGAGGACTAGGAAGTGCCACCAACTTGTGTGGGCTTTA
1 AAAGGAGAGAGCATCCTGCTCTTTGAGGACTAGGAAGTGCCACCAACTTGTGTGGGCTTTA
* *
831907 AAAGGAGA-AGGCATCCTGCTCTTTGAGGA-T-TGAAGGTGCCACCAGCTTGTGTGGGCTTTA
1 AAAGGAGAGA-GCATCCTGCTCTTTGAGGACTAGGAA-GTGCCACCAACTTGTGTGGGCTTTA
831967 AAAGG
1 AAAGG
831972 CATCCTACTC
Statistics
Matches: 60, Mismatches: 3, Indels: 5
0.88 0.04 0.07
Matches are distributed among these distances:
59 3 0.05
60 31 0.52
61 26 0.43
ACGTcount: A:0.25, C:0.18, G:0.32, T:0.25
Consensus pattern (61 bp):
AAAGGAGAGAGCATCCTGCTCTTTGAGGACTAGGAAGTGCCACCAACTTGTGTGGGCTTTA
Found at i:831983 original size:154 final size:152
Alignment explanation
Indices: 831708--832125 Score: 605
Period size: 154 Copynumber: 2.7 Consensus size: 152
831698 GCTTTAAAAG
* *
831708 GCGTCCTACTCTTTGAGGACTAAAGGTGCCACCAACTTGTGTGGGCTTT-AAA--AG-A--CGTC
1 GCGTCCTGCTCTTTGAGGACTAAA-GTGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAGGCATC
* * * * * * *
831767 CTGCTCTTTGAAGACTGGAGGGTGCCACCAACTCGTGTGGGCTTCAAAAGGCGTCCTGCTCTTTG
65 CTGCTCTTTGAGGA-TTGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGCATCCTACTCTTTG
831832 AGGACAAAAAGGCGAAAGGAGAGA
129 AGGACAAAAAGGCGAAAGGAGAGA
831856 GCGTCCTGCTCTTTGAGGACTAGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAGGCAT
1 GCGTCCTGCTCTTTGAGGACTA--AAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAGGCAT
*
831921 CCTGCTCTTTGAGGATTGAAGGTGCCACCAGCTTGTGTGGGCTTTAAAAGGCATCCTACTCTTTG
64 CCTGCTCTTTGAGGATTGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGCATCCTACTCTTTG
*
831986 AGGACAAAAAGGCGAAAGGAGGGA
129 AGGACAAAAAGGCGAAAGGAGAGA
832010 GCGTCCTGCTCTTTGAGGACTAAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAGGCAT
1 GCGTCCTGCTCTTTGAGGACT--AAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAGGCAT
** *
832075 CCTGCTCTTTGAGGATTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAG
64 CCTGCTCTTTGAGGATT-GAAGGTGCCACCAACTTGTGTGGGCTTTAAAAG
832126 AAAAGGCGTC
Statistics
Matches: 244, Mismatches: 15, Indels: 15
0.89 0.05 0.05
Matches are distributed among these distances:
148 21 0.09
149 24 0.10
150 5 0.02
152 2 0.01
153 1 0.00
154 145 0.59
155 45 0.18
156 1 0.00
ACGTcount: A:0.26, C:0.21, G:0.29, T:0.24
Consensus pattern (152 bp):
GCGTCCTGCTCTTTGAGGACTAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAGGCATCC
TGCTCTTTGAGGATTGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGCATCCTACTCTTTGAG
GACAAAAAGGCGAAAGGAGAGA
Found at i:832078 original size:61 final size:61
Alignment explanation
Indices: 832010--832631 Score: 615
Period size: 61 Copynumber: 10.4 Consensus size: 61
832000 AAAGGAGGGA
* *
832010 GCGTCCTGCTCTTTGAGGACTAAAAAGTGCCACCAACTTGTGTGGGCTTT-AAAAGGAGAAG
1 GCGTCCTGCTCTTTGAGGACTGAAAA-TGCCACCAACTTGTGTGGGCTTTGAAAAGGAAAAG
* *
832071 GCATCCTGCTCTTTGAGGATTGGAAAATGCCACCAACTTGTGTGGGCTTTG-AAA-GAAAAG
1 GCGTCCTGCTCTTTGAGGACT-GAAAATGCCACCAACTTGTGTGGGCTTTGAAAAGGAAAAG
* * *
832131 GCGT-CTAGCTCTTTGAGGACTGAAAAATACCACCCACTTGTGTGGGCTTTGAAAA-GAAAAA
1 GCGTCCT-GCTCTTTGAGGACTG-AAAATGCCACCAACTTGTGTGGGCTTTGAAAAGGAAAAG
* **
832192 GCATCCTGCTCTTTGAGGGTTGGAAAATGCCACCAACTTGTGTGGGCTTT-------AAAAG
1 GCGTCCTGCTCTTTGAGGACT-GAAAATGCCACCAACTTGTGTGGGCTTTGAAAAGGAAAAG
*
832247 GCGTCCTGCTCTTTGAGGACTGGAAAATGCCACTAACTTGTGTGGGCTTT---AA-G---AG
1 GCGTCCTGCTCTTTGAGGACT-GAAAATGCCACCAACTTGTGTGGGCTTTGAAAAGGAAAAG
* * * *
832302 GTGTCCTGCTCTTTGAGGACTGGAAAATGCCACCAACCTGTGTGGGCTTT-AAAAAGAAGAG
1 GCGTCCTGCTCTTTGAGGACT-GAAAATGCCACCAACTTGTGTGGGCTTTGAAAAGGAAAAG
* * * * * *
832363 GTGTCCTACTCTTTGAGGACT-AAAGGTGCCACCAACTCGTGTGGGCTTTAAAAAGAAAAAG
1 GCGTCCTGCTCTTTGAGGACTGAAA-ATGCCACCAACTTGTGTGGGCTTTGAAAAGGAAAAG
* * * ** * * *
832424 GTGTCCTGCTCTTTGAAGACTGGAGGTGCCACCAACTTGTGTGGGCTTTAAAAAGAAAAAAAA
1 GCGTCCTGCTCTTTGAGGACTGAAAATGCCACCAACTTGTGTGGGCTTTGAAAAG--GAAAAG
* * * * *
832487 GTGTCTTGCTCTTTGAGGACT-AAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAAG
1 GCGTCCTGCTCTTTGAGGACTGAAA-ATGCCACCAACTTGTGTGGGCTTTGAAAAG-GAAAAG
* * * * *
832549 ACGTCCTGTTCTTTGAGGACT-AAAGGTGCCACTAACTCGTGTGGGCTTTGAAAAGGAAAAG
1 GCGTCCTGCTCTTTGAGGACTGAAA-ATGCCACCAACTTGTGTGGGCTTTGAAAAGGAAAAG
832610 GCGTCCTGCTCTTTGAGGACTG
1 GCGTCCTGCTCTTTGAGGACTG
832632 GAAGGGCTAA
Statistics
Matches: 488, Mismatches: 50, Indels: 45
0.84 0.09 0.08
Matches are distributed among these distances:
55 99 0.20
57 2 0.00
58 1 0.00
59 6 0.01
60 68 0.14
61 195 0.40
62 65 0.13
63 52 0.11
ACGTcount: A:0.28, C:0.19, G:0.27, T:0.26
Consensus pattern (61 bp):
GCGTCCTGCTCTTTGAGGACTGAAAATGCCACCAACTTGTGTGGGCTTTGAAAAGGAAAAG
Found at i:832224 original size:121 final size:119
Alignment explanation
Indices: 832010--832630 Score: 658
Period size: 121 Copynumber: 5.2 Consensus size: 119
832000 AAAGGAGGGA
* * *
832010 GCGTCCTGCTCTTTGAGGACTAAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAGGCAT
1 GCGTCCTGCTCTTTGAGGACTAAAAA-TGCCACCAACTTGTGTGGGCTTTAAAA-GAAAAAGCGT
* *
832075 CCTGCTCTTTGAGGATTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGAAAAG
64 CCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTAAAAGAAAAG
* * *
832131 GCGT-CTAGCTCTTTGAGGACTGAAAAATACCACCCACTTGTGTGGGCTTTGAAAAGAAAAAGCA
1 GCGTCCT-GCTCTTTGAGGACT-AAAAATGCCACCAACTTGTGTGGGCTTT-AAAAGAAAAAGCG
**
832195 TCCTGCTCTTTGAGGGTTGGAAAATGCCACCAACTTGTGTGGGCTTT-----AAAAG
63 TCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTAAAAGAAAAG
* * * *
832247 GCGTCCTGCTCTTTGAGGACTGGAAAATGCCACTAACTTGTGTGGGCTTT--AAG---AGGTGTC
1 GCGTCCTGCTCTTTGAGGACT-AAAAATGCCACCAACTTGTGTGGGCTTTAAAAGAAAAAGCGTC
* *
832307 CTGCTCTTTGAGGACTGGAAAATGCCACCAACCTGTGTGGGCTTTAAAAAGAAGAG
65 CTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTT-AAAAGAAAAG
* * ** * *
832363 GTGTCCTACTCTTTGAGGACTAAAGGTGCCACCAACTCGTGTGGGCTTTAAAAAGAAAAAGGTGT
1 GCGTCCTGCTCTTTGAGGACTAAAAATGCCACCAACTTGTGTGGGCTTT-AAAAGAAAAA-GCGT
* ** *
832428 CCTGCTCTTTGAAGACTGG-AGGTGCCACCAACTTGTGTGGGCTTTAAAAAGAAAAAAAA
64 CCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTT-AAAAG---AAAAG
* * ** *
832487 GTGTCTTGCTCTTTGAGGACTAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAAGACG
1 GCGTCCTGCTCTTTGAGGACTAAAAATGCCACCAACTTGTGTGGGCTTT-AAAAG-AAAAAG-CG
* * * *
832552 TCCTGTTCTTTGAGGACT--AAAGGTGCCACTAACTCGTGTGGGCTTTGAAAAGGAAAAG
63 TCCTGCTCTTTGAGGACTGGAAA-ATGCCACCAACTTGTGTGGGCTTT-AAAA-GAAAAG
832610 GCGTCCTGCTCTTTGAGGACT
1 GCGTCCTGCTCTTTGAGGACT
832631 GGAAGGGCTA
Statistics
Matches: 432, Mismatches: 43, Indels: 48
0.83 0.08 0.09
Matches are distributed among these distances:
110 46 0.11
113 3 0.01
115 23 0.05
116 71 0.16
117 2 0.00
118 3 0.01
120 2 0.00
121 122 0.28
122 31 0.07
123 23 0.05
124 57 0.13
125 48 0.11
126 1 0.00
ACGTcount: A:0.28, C:0.19, G:0.27, T:0.26
Consensus pattern (119 bp):
GCGTCCTGCTCTTTGAGGACTAAAAATGCCACCAACTTGTGTGGGCTTTAAAAGAAAAAGCGTCC
TGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTAAAAGAAAAG
Found at i:832419 original size:231 final size:234
Alignment explanation
Indices: 832010--832631 Score: 640
Period size: 231 Copynumber: 2.6 Consensus size: 234
832000 AAAGGAGGGA
832010 GCGTCCTGCTCTTTGAGGACTAAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAGGCAT
1 GCGTCCTGCTCTTTGAGGACTAAAAAGTGCCACCAACTTGTGTGGGCTTT-AAAGGAG-AGG-AT
* * *
832075 CCTGCTCTTTGAGGATTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGAAAAGGCGTCTAGC
63 CCTGCTCTTTGAGGACTGGAAAATGCCACCAACCTGTGTGGGCTTTAAAAGAAAAGGCGTCTAGC
* * *
832140 TCTTTGAGGACTGAAAAATACCACCCACTTGTGTGGGCTTTGAAAAGAAAAA-GCATCCTGCTCT
128 TCTTTGAGGACTGAAAAATACCACCAACTCGTGTGGGCTTTAAAAAGAAAAAGGCATCCTGCTCT
* **
832204 TTGAGGGTTGGAAAATGCCACCAACTTGTGTGGGCTTTAAAAG
193 TTGAAGACTGG-AAATGCCACCAACTTGTGTGGGCTTTAAAAG
* *
832247 GCGTCCTGCTCTTTGAGGACTGGAAAA-TGCCACTAACTTGTGTGGGCTTT-AA-GAG-GTG-TC
1 GCGTCCTGCTCTTTGAGGACT-AAAAAGTGCCACCAACTTGTGTGGGCTTTAAAGGAGAG-GATC
* *
832307 CTGCTCTTTGAGGACTGGAAAATGCCACCAACCTGTGTGGGCTTTAAAAAGAAGAGGTGTCCTA-
64 CTGCTCTTTGAGGACTGGAAAATGCCACCAACCTGTGTGGGCTTT-AAAAGAAAAGGCGT-CTAG
** * **
832371 CTCTTTGAGGACT-AAAGGTGCCACCAACTCGTGTGGGCTTTAAAAAGAAAAAGGTGTCCTGCTC
127 CTCTTTGAGGACTGAAAAATACCACCAACTCGTGTGGGCTTTAAAAAGAAAAAGGCATCCTGCTC
**
832435 TTTGAAGACTGGAGGTGCCACCAACTTGTGTGGGCTTTAAAAAG
192 TTTGAAGACTGGAAATGCCACCAACTTGTGTGGGCTTT-AAAAG
* * * *
832479 AAAAAAAAGTGTCTTGCTCTTTGAGGACT-AAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGA
1 --------GCGTCCTGCTCTTTGAGGACTAAAAAGTGCCACCAACTTGTGTGGGCTTT--AAAG-
* * * * * *
832543 AAAAAGACGTCCTGTTCTTTGAGGACT--AAAGGTGCCACTAA-CTCGTGTGGGCTTTGAAAAGG
55 GAGAGGA--TCCTGCTCTTTGAGGACTGGAAA-ATGCCACCAACCT-GTGTGGGCTTT-AAAA-G
832605 AAAAGGCGTCCT-GCTCTTTGAGGACTG
114 AAAAGGCGT-CTAGCTCTTTGAGGACTG
832632 GAAGGGCTAA
Statistics
Matches: 322, Mismatches: 34, Indels: 47
0.80 0.08 0.12
Matches are distributed among these distances:
231 102 0.32
232 48 0.15
233 4 0.01
234 3 0.01
235 2 0.01
237 43 0.13
238 7 0.02
239 21 0.07
240 19 0.06
242 2 0.01
244 2 0.01
245 5 0.02
246 23 0.07
247 41 0.13
ACGTcount: A:0.28, C:0.19, G:0.27, T:0.26
Consensus pattern (234 bp):
GCGTCCTGCTCTTTGAGGACTAAAAAGTGCCACCAACTTGTGTGGGCTTTAAAGGAGAGGATCCT
GCTCTTTGAGGACTGGAAAATGCCACCAACCTGTGTGGGCTTTAAAAGAAAAGGCGTCTAGCTCT
TTGAGGACTGAAAAATACCACCAACTCGTGTGGGCTTTAAAAAGAAAAAGGCATCCTGCTCTTTG
AAGACTGGAAATGCCACCAACTTGTGTGGGCTTTAAAAG
Found at i:838110 original size:42 final size:42
Alignment explanation
Indices: 838055--838215 Score: 268
Period size: 42 Copynumber: 3.8 Consensus size: 42
838045 TTCTTCTCTC
* * *
838055 CTCCTCCTGTCATCCCTCCTCTCTCTATTATCTCTCCTGTCT
1 CTCCTCCTATCATCCCTCCTATCTCTACTATCTCTCCTGTCT
838097 CTCCTCCTATCATCCCTCCTATCTCTACTATCTCTCCTGTCT
1 CTCCTCCTATCATCCCTCCTATCTCTACTATCTCTCCTGTCT
838139 CTCCTCCTATCATCCCTCCTATCTCTACTATCTCTCCTGTCT
1 CTCCTCCTATCATCCCTCCTATCTCTACTATCTCTCCTGTCT
* * *
838181 CTCCTCCTATCATCCCTCCTCTCTCTTCTTTCTCT
1 CTCCTCCTATCATCCCTCCTATCTCTACTATCTCT
838216 TTGAGGGCTA
Statistics
Matches: 113, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
42 113 1.00
ACGTcount: A:0.09, C:0.46, G:0.02, T:0.42
Consensus pattern (42 bp):
CTCCTCCTATCATCCCTCCTATCTCTACTATCTCTCCTGTCT
Found at i:838114 original size:12 final size:11
Alignment explanation
Indices: 838088--838205 Score: 72
Period size: 12 Copynumber: 10.9 Consensus size: 11
838078 TCTATTATCT
*
838088 CTCCTGTCTCTC
1 CTCCTATCTC-C
838100 CTCCTATCATCC
1 CTCCTATC-TCC
838112 CTCCTATCT--
1 CTCCTATCTCC
*
838121 CTACTATCT--
1 CTCCTATCTCC
*
838130 CTCCTGTCTCTC
1 CTCCTATCTC-C
838142 CTCCTATCATCC
1 CTCCTATC-TCC
838154 CTCCTATCT--
1 CTCCTATCTCC
*
838163 CTACTATCT--
1 CTCCTATCTCC
*
838172 CTCCTGTCTCTC
1 CTCCTATCTC-C
838184 CTCCTATCATCC
1 CTCCTATC-TCC
*
838196 CTCCTCTCTC
1 CTCCTATCTC
838206 TTCTTTCTCT
Statistics
Matches: 87, Mismatches: 10, Indels: 19
0.75 0.09 0.16
Matches are distributed among these distances:
9 30 0.34
11 4 0.05
12 47 0.54
13 6 0.07
ACGTcount: A:0.10, C:0.47, G:0.03, T:0.40
Consensus pattern (11 bp):
CTCCTATCTCC
Found at i:838181 original size:9 final size:9
Alignment explanation
Indices: 838083--838185 Score: 65
Period size: 9 Copynumber: 12.1 Consensus size: 9
838073 CTCTCTCTAT
838083 TATCTCTCC
1 TATCTCTCC
*
838092 TGTCTCTCC
1 TATCTCTCC
* *
838101 T-CCTAT-C
1 TATCTCTCC
*
838108 -ATCCCTCC
1 TATCTCTCC
*
838116 TATCTCTAC
1 TATCTCTCC
838125 TATCTCTCC
1 TATCTCTCC
*
838134 TGTCTCTCC
1 TATCTCTCC
* *
838143 T-CCTAT-C
1 TATCTCTCC
*
838150 -ATCCCTCC
1 TATCTCTCC
*
838158 TATCTCTAC
1 TATCTCTCC
838167 TATCTCTCC
1 TATCTCTCC
*
838176 TGTCTCTCC
1 TATCTCTCC
838185 T
1 T
838186 CCTATCATCC
Statistics
Matches: 69, Mismatches: 19, Indels: 12
0.69 0.19 0.12
Matches are distributed among these distances:
7 6 0.09
8 8 0.12
9 55 0.80
ACGTcount: A:0.11, C:0.45, G:0.03, T:0.42
Consensus pattern (9 bp):
TATCTCTCC
Found at i:845624 original size:79 final size:79
Alignment explanation
Indices: 845529--845763 Score: 332
Period size: 79 Copynumber: 3.0 Consensus size: 79
845519 ATCTCCCGAC
* *
845529 GAGAAATTTAATATTTT-GGAGATAATA-ATGGGGTTAGAGTATCCCCTCGAAAATAACGGGGTT
1 GAGAAA-TTAATATTTTAGGA-ATAA-AGCTGGGGTTAGAGTATCCCCTCGAAAATGACGGGGTT
845592 GGAGTATCCCCGATTGT
63 GGAGTATCCCCGATTGT
* *
845609 GAGAAATTAATATTTTAGGAATAAAGCTGGGGTTAGAGTATCCCTTCGAAAATGATGGGGTTGGA
1 GAGAAATTAATATTTTAGGAATAAAGCTGGGGTTAGAGTATCCCCTCGAAAATGACGGGGTTGGA
845674 GTATCCCCGATTGT
66 GTATCCCCGATTGT
** * * *
845688 GAGAAATTAATATTTTAGGAATAAAGCCAGGGTTGGAGTATCACCTCGGAAGA-GACGGGGTTGG
1 GAGAAATTAATATTTTAGGAATAAAGCTGGGGTTAGAGTATCCCCTC-GAAAATGACGGGGTTGG
845752 AGTATCCCCGAT
65 AGTATCCCCGAT
845764 GATTAACGGG
Statistics
Matches: 141, Mismatches: 11, Indels: 7
0.89 0.07 0.04
Matches are distributed among these distances:
78 1 0.01
79 127 0.90
80 13 0.09
ACGTcount: A:0.31, C:0.13, G:0.28, T:0.28
Consensus pattern (79 bp):
GAGAAATTAATATTTTAGGAATAAAGCTGGGGTTAGAGTATCCCCTCGAAAATGACGGGGTTGGA
GTATCCCCGATTGT
Found at i:848164 original size:13 final size:13
Alignment explanation
Indices: 848146--848173 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
848136 TACAAAAGAT
848146 CAATGTATCGATA
1 CAATGTATCGATA
848159 CAATGTATCGATA
1 CAATGTATCGATA
848172 CA
1 CA
848174 TTTCCTTAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.39, C:0.18, G:0.14, T:0.29
Consensus pattern (13 bp):
CAATGTATCGATA
Found at i:848186 original size:21 final size:21
Alignment explanation
Indices: 848160--848201 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
848150 GTATCGATAC
848160 AATGTATCGATACATTTCCTT
1 AATGTATCGATACATTTCCTT
848181 AATGTATCGATACATTTCCTT
1 AATGTATCGATACATTTCCTT
848202 GGCAGTAGCT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.29, C:0.19, G:0.10, T:0.43
Consensus pattern (21 bp):
AATGTATCGATACATTTCCTT
Found at i:848250 original size:19 final size:19
Alignment explanation
Indices: 848226--848284 Score: 58
Period size: 19 Copynumber: 3.4 Consensus size: 19
848216 AGCGATACAT
848226 TGTATCGACACAAAACTTA
1 TGTATCGACACAAAACTTA
* *
848245 TGTAT-----CAATACAT-
1 TGTATCGACACAAAACTTA
848258 TGTATCGACACAAAACTTA
1 TGTATCGACACAAAACTTA
848277 TGTATCGA
1 TGTATCGA
848285 TACATTGTAT
Statistics
Matches: 30, Mismatches: 4, Indels: 12
0.65 0.09 0.26
Matches are distributed among these distances:
13 5 0.17
14 6 0.20
18 6 0.20
19 13 0.43
ACGTcount: A:0.39, C:0.19, G:0.12, T:0.31
Consensus pattern (19 bp):
TGTATCGACACAAAACTTA
Found at i:848261 original size:32 final size:32
Alignment explanation
Indices: 848218--848322 Score: 183
Period size: 32 Copynumber: 3.3 Consensus size: 32
848208 AGCTTCGTAG
848218 CGATACATTGTATCGACACAAAACTTATGTAT
1 CGATACATTGTATCGACACAAAACTTATGTAT
*
848250 CAATACATTGTATCGACACAAAACTTATGTAT
1 CGATACATTGTATCGACACAAAACTTATGTAT
* *
848282 CGATACATTGTATCGATACAACACTTATGTAT
1 CGATACATTGTATCGACACAAAACTTATGTAT
848314 CGATACATT
1 CGATACATT
848323 TTCTGTTTGT
Statistics
Matches: 69, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
32 69 1.00
ACGTcount: A:0.37, C:0.19, G:0.11, T:0.32
Consensus pattern (32 bp):
CGATACATTGTATCGACACAAAACTTATGTAT
Found at i:848295 original size:13 final size:13
Alignment explanation
Indices: 848277--848301 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
848267 ACAAAACTTA
848277 TGTATCGATACAT
1 TGTATCGATACAT
848290 TGTATCGATACA
1 TGTATCGATACA
848302 ACACTTATGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:848314 original size:19 final size:19
Alignment explanation
Indices: 848258--848320 Score: 66
Period size: 19 Copynumber: 3.6 Consensus size: 19
848248 ATCAATACAT
* *
848258 TGTATCGACACAAAACTTA
1 TGTATCGATACAACACTTA
848277 TGTATCGAT---ACA--T-
1 TGTATCGATACAACACTTA
848290 TGTATCGATACAACACTTA
1 TGTATCGATACAACACTTA
848309 TGTATCGATACA
1 TGTATCGATACA
848321 TTTTCTGTTT
Statistics
Matches: 36, Mismatches: 2, Indels: 12
0.72 0.04 0.24
Matches are distributed among these distances:
13 9 0.25
14 1 0.03
16 5 0.14
18 1 0.03
19 20 0.56
ACGTcount: A:0.37, C:0.19, G:0.13, T:0.32
Consensus pattern (19 bp):
TGTATCGATACAACACTTA
Found at i:848350 original size:19 final size:19
Alignment explanation
Indices: 848289--848350 Score: 54
Period size: 19 Copynumber: 3.2 Consensus size: 19
848279 TATCGATACA
*
848289 TTGTATCGATACAACACT-T
1 TTGTATCGATACAA-ATTGT
* **
848308 ATGTATCGATACATTTTCTGT
1 TTGTATCGATACA-AAT-TGT
848329 TTGTATCGATACAAATTGT
1 TTGTATCGATACAAATTGT
848348 TTG
1 TTG
848351 AAATTCAAAA
Statistics
Matches: 33, Mismatches: 7, Indels: 6
0.72 0.15 0.13
Matches are distributed among these distances:
19 18 0.55
20 2 0.06
21 13 0.39
ACGTcount: A:0.27, C:0.15, G:0.15, T:0.44
Consensus pattern (19 bp):
TTGTATCGATACAAATTGT
Found at i:848654 original size:27 final size:27
Alignment explanation
Indices: 848592--848751 Score: 203
Period size: 27 Copynumber: 5.9 Consensus size: 27
848582 GGTGTCTACA
* *
848592 GGTGCCATGGAGTGGTGGACTTTAAAAG
1 GGTGCCACGGAGTTGTGGACTTT-AAAG
848620 GGTGCCACGGAGTTGTGGACTTTAAAG
1 GGTGCCACGGAGTTGTGGACTTTAAAG
* *
848647 GGCGCCACGGAGTTGTGGACTTAAAAG
1 GGTGCCACGGAGTTGTGGACTTTAAAG
* * * *
848674 GATACCACAGAATTGTGGACTTTAAAAG
1 GGTGCCACGGAGTTGTGGACTTT-AAAG
* *
848702 GGTGCCATGGAGTTGTGGACTTAAAAG
1 GGTGCCACGGAGTTGTGGACTTTAAAG
*
848729 GATGCCACGGAGTTGTGGACTTT
1 GGTGCCACGGAGTTGTGGACTTT
848752 GAAAAGAAAT
Statistics
Matches: 112, Mismatches: 19, Indels: 3
0.84 0.14 0.02
Matches are distributed among these distances:
27 70 0.62
28 42 0.38
ACGTcount: A:0.26, C:0.14, G:0.34, T:0.25
Consensus pattern (27 bp):
GGTGCCACGGAGTTGTGGACTTTAAAG
Found at i:848702 original size:55 final size:55
Alignment explanation
Indices: 848595--848757 Score: 238
Period size: 55 Copynumber: 2.9 Consensus size: 55
848585 GTCTACAGGT
* *
848595 GCCATGGAGTGGTGGACTTTAAAAGGGTGCCACGGAGTTGTGGACTTT-AAAGGGC
1 GCCATGGAGTTGTGGAC-TTAAAAGGATGCCACGGAGTTGTGGACTTTAAAAGGGC
* * * * *
848650 GCCACGGAGTTGTGGACTTAAAAGGATACCACAGAATTGTGGACTTTAAAAGGGT
1 GCCATGGAGTTGTGGACTTAAAAGGATGCCACGGAGTTGTGGACTTTAAAAGGGC
848705 GCCATGGAGTTGTGGACTTAAAAGGATGCCACGGAGTTGTGGACTTTGAAAAG
1 GCCATGGAGTTGTGGACTTAAAAGGATGCCACGGAGTTGTGGACTTT-AAAAG
848758 AAATGCCACT
Statistics
Matches: 95, Mismatches: 11, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
54 26 0.27
55 64 0.67
56 5 0.05
ACGTcount: A:0.28, C:0.14, G:0.34, T:0.24
Consensus pattern (55 bp):
GCCATGGAGTTGTGGACTTAAAAGGATGCCACGGAGTTGTGGACTTTAAAAGGGC
Found at i:848743 original size:82 final size:85
Alignment explanation
Indices: 848606--848784 Score: 265
Period size: 82 Copynumber: 2.1 Consensus size: 85
848596 CCATGGAGTG
* *
848606 GTGGACTTTAAAAGGGTGCCACGGAGTTGTGGACTTTAAAGGGCGCCACGGAGTTGTGGAC-TT-
1 GTGGACTTTAAAAGGGTGCCACGGAGTTGTGGACTTAAAAGGACGCCACGGAGTTGTGGACTTTG
* *
848669 AAAAG-GATACCACAGAATT
66 AAAAGAAATACCACAGAATC
* *
848688 GTGGACTTTAAAAGGGTGCCATGGAGTTGTGGACTTAAAAGGATGCCACGGAGTTGTGGACTTTG
1 GTGGACTTTAAAAGGGTGCCACGGAGTTGTGGACTTAAAAGGACGCCACGGAGTTGTGGACTTTG
* *
848753 AAAAGAAATGCCACTGAATC
66 AAAAGAAATACCACAGAATC
848773 GTGGACTTTAAA
1 GTGGACTTTAAA
848785 GAGGTCACAA
Statistics
Matches: 86, Mismatches: 8, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
82 57 0.66
83 2 0.02
84 5 0.06
85 22 0.26
ACGTcount: A:0.30, C:0.15, G:0.31, T:0.25
Consensus pattern (85 bp):
GTGGACTTTAAAAGGGTGCCACGGAGTTGTGGACTTAAAAGGACGCCACGGAGTTGTGGACTTTG
AAAAGAAATACCACAGAATC
Found at i:857206 original size:20 final size:20
Alignment explanation
Indices: 857181--857258 Score: 95
Period size: 20 Copynumber: 3.9 Consensus size: 20
857171 AAAAAGACAG
857181 AAGAATGTATCGATACATTA
1 AAGAATGTATCGATACATTA
857201 AAGAATGTATCGATACATTCA
1 AAGAATGTATCGATACATT-A
* * * *
857222 TA-CATGTATCTATACATTG
1 AAGAATGTATCGATACATTA
*
857241 AAGAATGTATTGATACAT
1 AAGAATGTATCGATACAT
857259 ATGGGTAAGA
Statistics
Matches: 48, Mismatches: 8, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
19 1 0.02
20 45 0.94
21 2 0.04
ACGTcount: A:0.41, C:0.12, G:0.14, T:0.33
Consensus pattern (20 bp):
AAGAATGTATCGATACATTA
Found at i:857848 original size:62 final size:62
Alignment explanation
Indices: 857782--858142 Score: 453
Period size: 61 Copynumber: 5.9 Consensus size: 62
857772 TCTACAGCTA
857782 CCACCAACTCGTGTGGGCTTTGAACAA-AAAAAGGCATCCTATTCTTTGAGGACTAAAGGGTG
1 CCACCAACTCGTGTGGGCTTTGAA-AAGAAAAAGGCATCCTATTCTTTGAGGACTAAAGGGTG
* * ** *
857844 CCACCAACTCATGTGGGCTTTGAAAAGAGAAAGGCATCCTGCTCTTTGAGGACTAAA-AGTG
1 CCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGGCATCCTATTCTTTGAGGACTAAAGGGTG
* * ** *
857905 CCACCAACTCGTGTGGAC-TTGAAACGAAAAAGGTGTCCTACTT-TTTGAGAACTAAAGGGTG
1 CCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGGCATCCTA-TTCTTTGAGGACTAAAGGGTG
* * * * **
857966 CCACCAACTCGTATGGGC-TTGAAAAGAAAATGACGTCCTGCTCTTTGAGGACTAAAGGGTG
1 CCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGGCATCCTATTCTTTGAGGACTAAAGGGTG
* *
858027 CCACCAACTCGTGTAGGCTTTGAAAAGAAAAAAGGCATCCTATTCTTTGAAGACTAAAGGGTG
1 CCACCAACTCGTGTGGGCTTTGAAAAG-AAAAAGGCATCCTATTCTTTGAGGACTAAAGGGTG
** * **
858090 CCACCAACTCGTGTCAGCTTTGAAAAGAAAAAGGCATCTTGGTCTTTGAGGAC
1 CCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGGCATCCTATTCTTTGAGGAC
858143 CAACTCGTGT
Statistics
Matches: 255, Mismatches: 38, Indels: 12
0.84 0.12 0.04
Matches are distributed among these distances:
60 30 0.12
61 91 0.36
62 80 0.31
63 54 0.21
ACGTcount: A:0.31, C:0.21, G:0.24, T:0.24
Consensus pattern (62 bp):
CCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGGCATCCTATTCTTTGAGGACTAAAGGGTG
Found at i:858184 original size:48 final size:49
Alignment explanation
Indices: 858092--858190 Score: 146
Period size: 48 Copynumber: 2.0 Consensus size: 49
858082 AAAGGGTGCC
* *
858092 ACCAACTCGTGTCAGCTTTGAAAAGAAAAAGGCATCTTGGTCTTTGAGG
1 ACCAACTCGTGTCAGCTTTGAAAAGAAAAAGGCATCCTGCTCTTTGAGG
* **
858141 ACCAACTCGTGTGAGC-TTGAAAAGAAAAAGGTGTCCTGCTCTTTGAGG
1 ACCAACTCGTGTCAGCTTTGAAAAGAAAAAGGCATCCTGCTCTTTGAGG
858189 AC
1 AC
858191 TAAAGGGCTA
Statistics
Matches: 45, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
48 30 0.67
49 15 0.33
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.25
Consensus pattern (49 bp):
ACCAACTCGTGTCAGCTTTGAAAAGAAAAAGGCATCCTGCTCTTTGAGG
Found at i:859493 original size:22 final size:22
Alignment explanation
Indices: 859469--859525 Score: 64
Period size: 24 Copynumber: 2.5 Consensus size: 22
859459 TATTCATTCT
859469 TTTTTC-TGTTTT-TTTCTCTTG
1 TTTTTCAT-TTTTGTTTCTCTTG
859490 TTTTTCATTTTTGTTTCTCTTATG
1 TTTTTCATTTTTGTTTCTC-T-TG
*
859514 TTTCTCATTTTT
1 TTTTTCATTTTT
859526 TGCTTTTACC
Statistics
Matches: 31, Mismatches: 1, Indels: 5
0.84 0.03 0.14
Matches are distributed among these distances:
21 10 0.32
22 7 0.23
23 1 0.03
24 13 0.42
ACGTcount: A:0.05, C:0.14, G:0.07, T:0.74
Consensus pattern (22 bp):
TTTTTCATTTTTGTTTCTCTTG
Found at i:864670 original size:158 final size:157
Alignment explanation
Indices: 864508--865198 Score: 623
Period size: 158 Copynumber: 4.4 Consensus size: 157
864498 TTTGGAGATA
* * *
864508 AAAATGGGATTGGAGTATC-CCTTCGAAAATAACGAGGTTGGAGTATCCTCGATAGTGGAAAAAT
1 AAAATGGGGTTGGAGTATCTCCTTCGAAAATAACG-GGTTGGAGTATCCCCGATGGTGGAAAAAT
* *
864572 CGATGCTTTAGGAATAAAATCGAGGTTAGAGTATCCTCTCAGAAA-AACGTGGTTAGAGTATCCC
65 CGATGTTTTAGGAATAAAATCGAGGTTAGAGTATCCTCTCAGAAATAACG-GGTTGGAGTATCCC
**
864636 CGATAATGGAAAAATTAGTGTTTTA-AGAAT
129 CGATGGTGG-AAAATTAGTGTTTTAGA-AAT
* * * * * *
864666 AAAATCGGGGTTAGAGTATCTCCTT-AAAAATAACGGGTTAGAGTTTTCTCGATGGT-GAAAAAT
1 AAAAT-GGGGTTGGAGTATCTCCTTCGAAAATAACGGGTTGGAGTATCCCCGATGGTGGAAAAAT
* ** * *
864729 -TAGTGTTTTA-GATATAAAGCCGAGGTTAGAGTAT-CTCGTCAGAAATAACGGGGTTGAAGTGT
65 CGA-TGTTTTAGGA-ATAAAATCGAGGTTAGAGTATCCTC-TCAGAAATAAC-GGGTTGGAGTAT
* * *
864791 CCCCGATGGTGGAATATTA-TATTTTGGAAAT
126 CCCCGATGGTGGAAAATTAGTGTTTTAGAAAT
* * * * *
864822 AAAACTGGGGTTGTAGTATCTCC-TCGGACATAACGAGGTTAGAGTATCCCCGATTGTGG-AAAA
1 AAAA-TGGGGTTGGAGTATCTCCTTCGAAAATAACG-GGTTGGAGTATCCCCGATGGTGGAAAAA
* * * *
864885 TCAATGTTTTAGAAATAAAATCGAGGTTGGAGTA-CCCCTC-GAAATAACAGGGTTGGAGTATCC
64 TCGATGTTTTAGGAATAAAATCGAGGTTAGAGTATCCTCTCAGAAATAAC-GGGTTGGAGTATCC
* *
864948 CCGATGGTGGAAAATT-GATCTTTTGGAAAT
128 CCGATGGTGGAAAATTAG-TGTTTTAGAAAT
*** * * *
864978 AAAACCAAGGTTAGAGTATCTCC-TCGGAAATAACGGGGTTGGAGTATCCCCGATGGT--ACGAA
1 AAAA-TGGGGTTGGAGTATCTCCTTCGAAAATAAC-GGGTTGGAGTATCCCCGATGGTGGA-AAA
* * *
865040 ATCGGTGTTTT-GGAAATAAAACTGGA-GTTAGAGTATCCTCTCTGAAATAACGAGGTTGGAGTA
63 ATCGATGTTTTAGG-AATAAAA-TCGAGGTTAGAGTATCCTCTCAGAAATAACG-GGTTGGAGTA
* *
865103 TCCCCGATGGTGAAAAATTGGTGTTTTAGAAAT
125 TCCCCGATGGTGGAAAATTAGTGTTTTAGAAAT
* * *
865136 AAAGTCGGGGTTGGAGTA--TCCTCTCGAAAATAAAGGTGTTGGAGTGTCCCCGATGGTGGAAAA
1 AAAAT-GGGGTTGGAGTATCTCCT-TCGAAAATAACGG-GTTGGAGTATCCCCGATGGTGGAAAA
865199 TTATATTTTG
Statistics
Matches: 435, Mismatches: 66, Indels: 63
0.77 0.12 0.11
Matches are distributed among these distances:
155 37 0.09
156 129 0.30
157 107 0.25
158 132 0.30
159 25 0.06
160 5 0.01
ACGTcount: A:0.32, C:0.13, G:0.26, T:0.28
Consensus pattern (157 bp):
AAAATGGGGTTGGAGTATCTCCTTCGAAAATAACGGGTTGGAGTATCCCCGATGGTGGAAAAATC
GATGTTTTAGGAATAAAATCGAGGTTAGAGTATCCTCTCAGAAATAACGGGTTGGAGTATCCCCG
ATGGTGGAAAATTAGTGTTTTAGAAAT
Found at i:865104 original size:235 final size:234
Alignment explanation
Indices: 864520--865217 Score: 752
Period size: 235 Copynumber: 3.0 Consensus size: 234
864510 AATGGGATTG
* * * * * *
864520 GAGTATC-CCTTCGAAAATAACGAGGTTGGAGTATCCTCGATAGTGGAAAAATCGATGCTTTAGG
1 GAGTATCTCC-TCGGAAATAACGGGGTTGGAGTATCCCCGAT-G-GTAGAAATCGATG-TTTTGG
* * *
864584 -AATAAAA-TCGAGGTTAGAGTATCCTCTCAGAAA-AACGTGGTTAGAGTATCCCCGATAATGGA
62 AAATAAAACTGGA-GTTAGAGTATCCTCTCAGAAATAACGAGGTTAGAGTATCCCCGATAGTGG-
* * ** *
864646 AAAATTAGTGTTTTA-AGAATAAAATCGGGGTTAGAGTATCTCCTTAAAAATAAC-GGGTTAGAG
125 AAAATTAGTGTTTTAGA-AATAAAATCGGGGTTGGAGTATC-CCCTCGAAATAACAGGGTTGGAG
* * * * * * * * *
864709 TTTTCTCGATGGTGAAAAATTAGTGTTTTAGATATAAAGCCGAGGTTA
188 TATCCCCGATGGTGGAAAATTA-TATTTTGGAAATAAAACCAAGGTTA
* * * * * * *
864757 GAGTATCTCGTCAGAAATAACGGGGTTGAAGTGTCCCCGATGGTGGAATAT-TATATTTTGGAAA
1 GAGTATCTCCTCGGAAATAACGGGGTTGGAGTATCCCCGATGGTAGAA-ATCGATGTTTTGGAAA
* * * *
864821 TAAAACTGGGGTT-GTAGTAT-CTCCTCGGACATAACGAGGTTAGAGTATCCCCGATTGTGGAAA
65 TAAAACTGGAGTTAG-AGTATCCT-CTCAGAAATAACGAGGTTAGAGTATCCCCGATAGTGGAAA
* * *
864884 ATCAATGTTTTAGAAATAAAATCGAGGTTGGAGTA-CCCCTCGAAATAACAGGGTTGGAGTATCC
128 ATTAGTGTTTTAGAAATAAAATCGGGGTTGGAGTATCCCCTCGAAATAACAGGGTTGGAGTATCC
*
864948 CCGATGGTGGAAAATTGATCTTTTGGAAATAAAACCAAGGTTA
193 CCGATGGTGGAAAATT-ATATTTTGGAAATAAAACCAAGGTTA
*
864991 GAGTATCTCCTCGGAAATAACGGGGTTGGAGTATCCCCGATGGTACGAAATCGGTGTTTTGGAAA
1 GAGTATCTCCTCGGAAATAACGGGGTTGGAGTATCCCCGATGGTA-GAAATCGATGTTTTGGAAA
* * * *
865056 TAAAACTGGAGTTAGAGTATCCTCTCTGAAATAACGAGGTTGGAGTATCCCCGATGGTGAAAAAT
65 TAAAACTGGAGTTAGAGTATCCTCTCAGAAATAACGAGGTTAGAGTATCCCCGATAGTGGAAAAT
* * * *
865121 TGGTGTTTTAGAAATAAAGTCGGGGTTGGAGTATCCTCTCGAAAATAA-AGGTGTTGGAGTGTCC
130 TAGTGTTTTAGAAATAAAATCGGGGTTGGAGTATCCCCTCG-AAATAACAGG-GTTGGAGTATCC
865185 CCGATGGTGGAAAATTATATTTTGGAAATAAAA
193 CCGATGGTGGAAAATTATATTTTGGAAATAAAA
865218 ACATCGATGA
Statistics
Matches: 385, Mismatches: 59, Indels: 35
0.80 0.12 0.07
Matches are distributed among these distances:
233 10 0.03
234 96 0.25
235 154 0.40
236 59 0.15
237 65 0.17
238 1 0.00
ACGTcount: A:0.33, C:0.13, G:0.26, T:0.28
Consensus pattern (234 bp):
GAGTATCTCCTCGGAAATAACGGGGTTGGAGTATCCCCGATGGTAGAAATCGATGTTTTGGAAAT
AAAACTGGAGTTAGAGTATCCTCTCAGAAATAACGAGGTTAGAGTATCCCCGATAGTGGAAAATT
AGTGTTTTAGAAATAAAATCGGGGTTGGAGTATCCCCTCGAAATAACAGGGTTGGAGTATCCCCG
ATGGTGGAAAATTATATTTTGGAAATAAAACCAAGGTTA
Found at i:865199 original size:79 final size:78
Alignment explanation
Indices: 864520--865217 Score: 563
Period size: 79 Copynumber: 8.9 Consensus size: 78
864510 AATGGGATTG
* * * * *
864520 GAGTATCC-CTTCGAAAATAACGAGGTTGGAGTATCCTCGATAGTGGAAAAATCGATGCTTTAGG
1 GAGTATCCTC-TCGAAAATAACG-GGTTGGAGTATCCCCGATGGTGG-AAAATTGATGTTTTAGA
864584 AATAAAATCGAGGTTA
63 AATAAAATCGAGGTTA
* **
864600 GAGTATCCTCTC-AGAAA-AACGTGGTTAGAGTATCCCCGATAATGGAAAAATT-AGTGTTTTA-
1 GAGTATCCTCTCGA-AAATAACG-GGTTGGAGTATCCCCGATGGTGG-AAAATTGA-TGTTTTAG
*
864661 AGAATAAAATCGGGGTTA
62 A-AATAAAATCGAGGTTA
** * * * * * *
864679 GAGTAT-CTCCTTAAAAATAACGGGTTAGAGTTTTCTCGATGGTGAAAAATT-AGTGTTTTAGAT
1 GAGTATCCT-CTCGAAAATAACGGGTTGGAGTATCCCCGATGGTGGAAAATTGA-TGTTTTAGAA
**
864742 ATAAAGCCGAGGTTA
64 ATAAAATCGAGGTTA
* * * * *
864757 GAGTAT-CTCGTC-AGAAATAACGGGGTTGAAGTGTCCCCGATGGTGGAATATT-ATATTTTGGA
1 GAGTATCCTC-TCGA-AAATAAC-GGGTTGGAGTATCCCCGATGGTGGAAAATTGATGTTTTAGA
*
864819 AATAAAA-CTGGGGTT-
63 AATAAAATC-GAGGTTA
* * * * **
864834 GTAGTAT-CTCCTCGGACATAACGAGGTTAGAGTATCCCCGATTGTGGAAAATCAATGTTTTAGA
1 G-AGTATCCT-CTCGAAAATAACG-GGTTGGAGTATCCCCGATGGTGGAAAATTGATGTTTTAGA
*
864898 AATAAAATCGAGGTTG
63 AATAAAATCGAGGTTA
* * *
864914 GAGTA-CCCCTCG-AAATAACAGGGTTGGAGTATCCCCGATGGTGGAAAATTGATCTTTTGGAAA
1 GAGTATCCTCTCGAAAATAAC-GGGTTGGAGTATCCCCGATGGTGGAAAATTGATGTTTTAGAAA
* *
864977 TAAAACCAAGGTTA
65 TAAAATCGAGGTTA
* * * * *
864991 GAGTAT-CTCCTCGGAAATAACGGGGTTGGAGTATCCCCGATGGTACG-AAATCGGTGTTTTGGA
1 GAGTATCCT-CTCGAAAATAAC-GGGTTGGAGTATCCCCGATGGT-GGAAAATTGATGTTTTAGA
*
865054 AATAAAACTGGA-GTTA
63 AATAAAA-TCGAGGTTA
* *
865070 GAGTATCCTCTCTG-AAATAACGAGGTTGGAGTATCCCCGATGGTGAAAAATTGGTGTTTTAGAA
1 GAGTATCCTCTC-GAAAATAACG-GGTTGGAGTATCCCCGATGGTGGAAAATTGATGTTTTAGAA
* * *
865134 ATAAAGTCGGGGTTG
64 ATAAAATCGAGGTTA
* * * *
865149 GAGTATCCTCTCGAAAATAAAGGTGTTGGAGTGTCCCCGATGGTGGAAAATT-ATATTTTGGAAA
1 GAGTATCCTCTCGAAAATAACGG-GTTGGAGTATCCCCGATGGTGGAAAATTGATGTTTTAGAAA
865213 TAAAA
65 TAAAA
865218 ACATCGATGA
Statistics
Matches: 507, Mismatches: 78, Indels: 68
0.78 0.12 0.10
Matches are distributed among these distances:
77 64 0.13
78 128 0.25
79 289 0.57
80 25 0.05
81 1 0.00
ACGTcount: A:0.33, C:0.13, G:0.26, T:0.28
Consensus pattern (78 bp):
GAGTATCCTCTCGAAAATAACGGGTTGGAGTATCCCCGATGGTGGAAAATTGATGTTTTAGAAAT
AAAATCGAGGTTA
Found at i:867638 original size:46 final size:49
Alignment explanation
Indices: 867586--867696 Score: 174
Period size: 46 Copynumber: 2.3 Consensus size: 49
867576 TATATTAAGA
*
867586 AATGTATCGATACATCTAGGTAAAACCCAAAATG-T-A-TACAATGAAT
1 AATGTATCGATACATCTAGGTAAAACCCAAAATGATCAGTACAATGAAG
867632 AATGTATCGATACATCTAGGTAAAACCCAAAATGTATCAGTTACAATGAAG
1 AATGTATCGATACATCTAGGTAAAACCCAAAATG-ATCAG-TACAATGAAG
867683 AATGTATCGATACA
1 AATGTATCGATACA
867697 AATTGTGGAA
Statistics
Matches: 59, Mismatches: 1, Indels: 5
0.91 0.02 0.08
Matches are distributed among these distances:
46 34 0.58
48 1 0.02
49 1 0.02
51 23 0.39
ACGTcount: A:0.44, C:0.15, G:0.14, T:0.26
Consensus pattern (49 bp):
AATGTATCGATACATCTAGGTAAAACCCAAAATGATCAGTACAATGAAG
Found at i:869031 original size:19 final size:20
Alignment explanation
Indices: 868987--869057 Score: 92
Period size: 20 Copynumber: 3.6 Consensus size: 20
868977 CTGCTAGTTT
* *
868987 CATGTATCGATACAATTATG
1 CATGTATCGATACAATGATA
869007 CATGTATCGATACAATGA-A
1 CATGTATCGATACAATGATA
*
869026 CATGTATCGATACAAAGCATA
1 CATGTATCGATACAATG-ATA
869047 -ATGTATCGATA
1 CATGTATCGATA
869058 TATCTAGATG
Statistics
Matches: 46, Mismatches: 3, Indels: 4
0.87 0.06 0.08
Matches are distributed among these distances:
19 16 0.35
20 29 0.63
21 1 0.02
ACGTcount: A:0.39, C:0.15, G:0.15, T:0.30
Consensus pattern (20 bp):
CATGTATCGATACAATGATA
Found at i:877516 original size:13 final size:13
Alignment explanation
Indices: 877500--877524 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
877490 CAATTTATCA
877500 TGTATCGATACAT
1 TGTATCGATACAT
877513 TGTATCGATACA
1 TGTATCGATACA
877525 ATGTGCCATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:877517 original size:33 final size:33
Alignment explanation
Indices: 877480--877544 Score: 94
Period size: 33 Copynumber: 2.0 Consensus size: 33
877470 TTTGAAGCAA
* * *
877480 TGTATCGATACAATTTATCATGTATCGATACAT
1 TGTATCGATACAATGTACCATGCATCGATACAT
*
877513 TGTATCGATACAATGTGCCATGCATCGATACA
1 TGTATCGATACAATGTACCATGCATCGATACA
877545 AATAGTGGTA
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 28 1.00
ACGTcount: A:0.32, C:0.18, G:0.15, T:0.34
Consensus pattern (33 bp):
TGTATCGATACAATGTACCATGCATCGATACAT
Found at i:878658 original size:13 final size:13
Alignment explanation
Indices: 878640--878665 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
878630 TACAGAAAGT
878640 ATGTATCGATACA
1 ATGTATCGATACA
878653 ATGTATCGATACA
1 ATGTATCGATACA
878666 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:878663 original size:32 final size:33
Alignment explanation
Indices: 878622--878685 Score: 94
Period size: 32 Copynumber: 2.0 Consensus size: 33
878612 TAGCCAAATT
* **
878622 TGTATCGATACAGAAAGTA-TGTATCGATACAA
1 TGTATCGATACACAAAAAATTGTATCGATACAA
878654 TGTATCGATACACAAAAAATTGTATCGATACA
1 TGTATCGATACACAAAAAATTGTATCGATACA
878686 TTGGCTTGTA
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
32 16 0.57
33 12 0.43
ACGTcount: A:0.42, C:0.14, G:0.16, T:0.28
Consensus pattern (33 bp):
TGTATCGATACACAAAAAATTGTATCGATACAA
Found at i:880915 original size:21 final size:21
Alignment explanation
Indices: 880882--880926 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
880872 TTGCAAGTTG
*
880882 AAATAAAGAAGTTGGCTAATGA
1 AAATAAAGAAGTTAGCTAA-GA
*
880904 AAATAATG-AGTTAGCTAAGA
1 AAATAAAGAAGTTAGCTAAGA
880924 AAA
1 AAA
880927 ATGAAAACTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 5 0.24
21 9 0.43
22 7 0.33
ACGTcount: A:0.53, C:0.04, G:0.20, T:0.22
Consensus pattern (21 bp):
AAATAAAGAAGTTAGCTAAGA
Found at i:884800 original size:20 final size:19
Alignment explanation
Indices: 884775--884869 Score: 75
Period size: 20 Copynumber: 4.6 Consensus size: 19
884765 ATGTCCAAAA
884775 TGTATCGATACATGTTTCT
1 TGTATCGATACATGTTTCT
*
884794 GTGTATCGATACATCTGGAAATTCT
1 -TGTATCGATACA--T-G--TTTCT
*
884819 ATGTATCGATACATTTTTCTT
1 -TGTATCGATACATGTTTC-T
* *
884840 TGTATCGATACAT-TGTAT
1 TGTATCGATACATGTTTCT
884858 TGTATCGATACA
1 TGTATCGATACA
884870 CTGTATCGAT
Statistics
Matches: 63, Mismatches: 6, Indels: 14
0.76 0.07 0.17
Matches are distributed among these distances:
18 13 0.21
19 2 0.03
20 28 0.44
21 1 0.02
22 1 0.02
23 2 0.03
25 16 0.25
ACGTcount: A:0.26, C:0.15, G:0.16, T:0.43
Consensus pattern (19 bp):
TGTATCGATACATGTTTCT
Found at i:884857 original size:13 final size:13
Alignment explanation
Indices: 884858--884882 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
884848 TACATTGTAT
884858 TGTATCGATACAC
1 TGTATCGATACAC
884871 TGTATCGATACA
1 TGTATCGATACA
884883 GGGTGATTAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.20, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAC
Found at i:884862 original size:18 final size:18
Alignment explanation
Indices: 884820--884875 Score: 67
Period size: 18 Copynumber: 3.0 Consensus size: 18
884810 GGAAATTCTA
* *
884820 TGTATCGATACATTTTTCTT
1 TGTATCGATACA-TTGT-AT
884840 TGTATCGATACATTGTAT
1 TGTATCGATACATTGTAT
*
884858 TGTATCGATACACTGTAT
1 TGTATCGATACATTGTAT
884876 CGATACAGGG
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
18 18 0.55
19 3 0.09
20 12 0.36
ACGTcount: A:0.25, C:0.14, G:0.14, T:0.46
Consensus pattern (18 bp):
TGTATCGATACATTGTAT
Done.