genome.fa.s1722.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1722
Parameters: 2 7 7 80 10 50 1000
Length:  64342

Tables:   1   

This is table  1  of  1  ( 66 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
812--936	52	2.4	52	95	0	223	28	17	18	36	1.94
812--956	52	2.8	51	89	4	211	29	17	18	34	1.94
945--969	13	1.9	13	100	0	50	36	16	16	32	1.90
2694--2719	13	2.0	13	100	0	52	30	15	15	38	1.88
2674--2737	32	2.0	33	87	3	94	28	14	17	40	1.88
3296--3339	21	2.1	21	83	8	54	25	31	4	38	1.76
3235--3466	112	2.1	112	98	0	446	30	25	6	37	1.80
3408--3451	21	2.1	21	83	8	54	25	31	4	38	1.76
5253--5278	13	2.0	13	100	0	52	38	15	15	30	1.88
7346--7380	15	2.2	16	90	5	54	14	20	14	51	1.76
9184--9228	21	2.1	21	84	8	56	22	20	4	53	1.63
11444--11469	13	2.0	13	100	0	52	30	15	15	38	1.88
11424--11487	32	2.0	33	87	3	94	28	14	17	40	1.88
15823--15887	19	3.5	17	76	14	58	78	9	9	3	1.06
15811--15887	37	2.1	36	83	13	95	77	10	9	2	1.07
17223--18153	27	33.7	27	81	5	749	25	31	14	28	1.95
17695--18461	28	27.6	28	80	7	213	28	31	15	25	1.96
17687--18480	56	14.2	56	80	5	287	28	31	15	24	1.96
18148--18512	28	12.8	28	88	2	471	31	29	17	22	1.96
18154--18620	28	15.9	32	85	6	261	30	29	17	21	1.96
18447--18688	127	1.9	128	80	5	285	29	30	18	21	1.97
19124--19157	17	1.9	17	94	5	59	88	2	0	8	0.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22844--22900	30	1.9	29	85	3	78	50	1	5	42	1.35
23229--23276	13	3.7	13	83	10	62	29	0	0	70	0.87
23840--23873	2	16.5	2	93	6	59	47	0	2	50	1.16
24278--24326	22	2.5	19	80	12	55	40	0	2	57	1.10
29947--29972	13	2.0	13	100	0	52	38	15	15	30	1.88
30431--30497	37	1.9	35	88	11	102	32	11	25	29	1.92
33666--33690	13	1.9	13	100	0	50	36	16	16	32	1.90
35571--35596	13	2.0	13	100	0	52	38	15	15	30	1.88
36055--36121	37	1.9	35	88	11	102	32	11	25	29	1.92
37081--37529	48	9.2	48	72	8	264	31	3	46	18	1.65
37087--37263	51	3.7	45	78	12	167	32	2	45	18	1.64
37146--37327	93	2.0	93	80	2	204	32	3	46	17	1.65
37404--37529	47	2.6	48	75	7	123	32	3	45	18	1.68
37377--37547	48	3.5	47	68	19	127	30	2	47	18	1.64
39203--39271	30	2.2	32	75	14	74	20	1	2	75	1.01
39245--39271	7	3.9	7	100	0	54	11	0	0	88	0.50
39915--39979	23	2.8	23	81	6	69	70	1	1	26	1.04
39915--39967	11	4.5	11	76	19	54	69	0	1	28	0.99
40042--40087	20	2.2	21	81	14	60	60	4	2	32	1.28
40030--40076	24	2.0	24	83	8	60	57	4	0	38	1.18
41825--41875	11	4.4	12	76	14	54	47	0	0	52	1.00
42631--42691	21	2.8	21	82	9	70	44	0	0	55	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43560--43664	18	5.8	18	73	16	67	37	3	0	58	1.23
43958--43984	4	6.8	4	100	0	54	22	0	0	77	0.76
44059--44085	3	9.0	3	100	0	54	33	0	0	66	0.92
44433--44457	12	2.1	12	100	0	50	0	0	8	92	0.40
44666--44707	16	2.6	16	85	14	59	59	0	2	38	1.10
46688--46764	37	2.1	37	92	0	127	42	5	6	45	1.52
47282--47328	18	2.7	17	78	12	51	42	0	0	57	0.98
50957--50993	2	18.0	2	88	5	56	51	2	0	45	1.15
51139--51183	22	2.0	22	91	8	74	37	0	0	62	0.96
51363--51424	15	3.8	17	70	23	53	62	0	0	37	0.95
51387--51452	21	3.4	21	76	19	63	62	3	0	34	1.11
52880--52916	19	2.0	19	89	5	58	37	5	0	56	1.22
52814--52903	36	2.6	36	76	13	84	41	1	1	56	1.14
53659--53747	17	5.6	16	64	20	53	49	3	0	47	1.18
53679--53748	16	4.2	16	72	13	52	52	2	0	44	1.15
53715--53748	16	2.0	18	88	11	54	55	0	0	44	0.99
53818--53888	29	2.3	32	76	16	78	42	1	1	54	1.17
55140--55174	16	2.1	16	89	10	52	28	0	0	71	0.86
55289--55328	11	3.5	11	86	13	55	2	15	2	80	0.93
55449--55540	48	2.0	46	81	16	109	47	0	0	52	1.00
55765--55817	6	8.2	6	83	8	52	49	0	1	49	1.12
56577--56613	2	18.5	2	100	0	74	0	48	0	51	1.00

Tables:   1

The End!