Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1723
Parameters: 2 7 7 80 10 50 1000
Length:  37269

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4750--4784
2
17.5
2
93
0
61
48
0
2
48
1.16
4778--4853
28
2.7
28
79
4
82
52
14
5
27
1.63
7586--7820
118
2.0
119
87
9
347
37
17
8
36
1.81
8953--9071
16
7.0
16
68
15
78
31
12
16
39
1.86
8903--9073
67
2.6
67
97
0
315
29
14
15
40
1.87
8953--9122
87
2.0
83
84
6
216
29
14
14
41
1.86
9037--9093
20
2.8
20
86
5
71
31
14
14
40
1.85
12608--12641
11
3.1
11
91
0
50
35
0
0
64
0.94
15354--15406
28
2.0
26
89
10
81
49
0
0
50
1.00
15362--15419
28
2.1
28
83
6
73
55
0
0
44
0.99
16031--16169
51
2.7
52
86
1
181
33
15
9
41
1.79
18477--18787
80
3.9
80
83
2
365
30
27
10
30
1.90
18768--19026
109
2.4
109
85
5
337
28
28
12
30
1.93
25592--25618
2
13.5
2
100
0
54
51
0
0
48
1.00
26313--26371
31
1.9
31
83
13
77
42
1
3
52
1.28
26658--26688
11
2.7
11
95
5
53
3
12
0
83
0.75
27346--27386
20
2.0
21
90
9
66
43
0
2
53
1.13
28462--28512
23
2.2
23
83
13
61
70
0
5
23
1.09
28462--28512
24
2.2
23
82
10
59
70
0
5
23
1.09
30839--30865
14
1.9
14
100
0
54
0
22
0
77
0.76
30839--30868
16
1.9
15
93
6
51
0
23
0
76
0.78
30891--30935
19
2.2
21
85
14
60
13
11
2
73
1.19
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
33110--33147
15
2.5
15
86
4
58
2
18
0
78
0.86
33137--33187
19
2.5
20
84
9
59
15
5
3
74
1.16
34419--34448
13
2.3
13
94
0
51
16
0
10
73
1.09
34679--34717
19
2.1
19
90
0
60
64
0
0
35
0.94
36446--36484
18
2.2
18
86
9
53
35
0
10
53
1.35

Tables:   1

The End!