Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1724
Parameters: 2 7 7 80 10 50 1000
Length:  75563

Tables:   1   

This is table  1  of  1  ( 38 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4746--4786
21
2.0
21
85
9
57
41
9
7
41
1.66
6599--6829
118
2.0
118
85
1
311
32
16
14
36
1.89
11327--11869
164
3.3
163
80
6
544
28
12
9
50
1.70
13565--13599
15
2.2
15
90
10
52
77
2
0
20
0.90
14145--14509
156
2.4
154
78
10
391
25
18
17
38
1.93
16048--16681
164
3.9
161
78
9
554
30
11
10
48
1.72
16048--16681
328
1.9
323
79
6
688
30
11
10
48
1.72
17941--17990
14
3.6
14
75
5
57
36
8
0
56
1.29
17942--18000
27
2.2
27
84
6
75
38
8
1
50
1.43
18275--18315
22
2.0
21
85
9
57
78
4
7
9
1.10
19061--19094
9
3.7
9
96
4
59
35
0
8
55
1.31
19844--20282
155
2.9
152
81
6
473
25
16
18
39
1.92
31309--32093
163
5.0
153
78
12
538
51
7
10
29
1.65
31457--32172
166
4.4
162
82
8
837
50
8
11
29
1.67
31369--32165
319
2.5
327
83
7
953
50
7
11
29
1.66
33513--34051
78
6.9
76
79
9
466
40
12
19
27
1.87
33513--34054
157
3.5
156
82
4
585
40
12
19
27
1.87
33513--34043
234
2.3
235
86
3
705
41
12
19
27
1.87
34804--34829
13
2.0
13
100
0
52
76
7
0
15
0.99
37098--37222
20
5.7
20
69
18
88
31
15
12
41
1.83
41404--41444
20
2.0
20
85
0
55
12
9
7
70
1.33
52313--53283
28
33.2
28
84
6
906
29
29
17
22
1.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
54175--54251
20
3.8
20
83
6
102
32
15
12
38
1.86
58219--58466
121
2.1
120
96
0
460
36
19
16
27
1.94
59139--59171
11
3.1
11
91
4
50
48
0
3
48
1.17
63214--63271
16
3.6
16
73
21
50
43
1
3
51
1.28
63239--63271
17
2.0
17
88
5
50
45
0
0
54
0.99
63322--63372
14
3.7
14
71
5
50
37
1
0
60
1.08
63475--63515
22
1.9
21
90
5
64
60
0
2
36
1.10
63792--63877
35
2.4
37
82
9
97
46
1
0
52
1.08
63798--63868
29
2.4
29
74
6
72
43
1
0
54
1.08
63792--63881
39
2.4
38
82
12
105
45
1
0
53
1.07
68480--68504
4
6.2
4
100
0
50
52
24
24
0
1.48
68736--68765
3
10.0
3
100
0
60
0
0
33
66
0.92
69332--69499
88
1.9
88
86
0
237
23
14
30
32
1.94
69709--69778
21
3.4
21
72
7
63
44
12
12
30
1.80
69826--69883
20
2.8
20
78
17
57
29
18
12
39
1.87
72506--72550
22
2.0
22
95
0
81
37
26
0
35
1.57

Tables:   1

The End!