genome.fa.s1727.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1727
Parameters: 2 7 7 80 10 50 1000
Length:  95211

Tables:   1   

This is table  1  of  1  ( 67 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6217--6277	19	3.4	19	70	21	67	42	3	19	34	1.68
6219--6288	35	2.0	35	100	0	140	42	2	20	34	1.66
6228--6285	19	3.2	19	68	22	61	46	1	20	31	1.61
7018--7160	70	2.0	70	93	0	241	30	17	16	35	1.92
11746--12120	187	2.0	187	97	0	714	27	17	17	37	1.92
12135--12159	13	1.9	13	100	0	50	32	16	16	36	1.90
16931--17072	56	2.6	54	79	8	151	63	12	11	11	1.53
18409--18551	66	2.2	64	82	7	164	20	24	14	39	1.91
18990--19163	64	2.7	62	75	11	152	20	22	16	40	1.91
18815--19226	195	2.1	195	79	7	442	18	22	18	41	1.91
18881--19279	65	6.1	64	74	8	252	19	23	16	40	1.91
25478--25531	20	2.7	20	97	0	99	27	14	14	42	1.85
25428--25580	69	2.2	70	89	1	227	27	16	16	39	1.90
26471--26509	10	3.7	10	80	12	51	33	15	20	30	1.94
26470--26514	22	2.0	22	100	0	90	37	13	17	31	1.89
27793--27919	50	2.5	49	81	8	130	28	22	10	38	1.87
27860--28188	79	4.2	79	79	3	315	26	25	13	34	1.94
27877--28168	158	1.8	158	81	4	365	25	23	14	35	1.93
27989--28234	79	3.1	79	79	4	230	26	26	14	32	1.95
34012--34036	13	1.9	13	100	0	50	36	16	16	32	1.90
34101--34125	13	1.9	13	100	0	50	32	16	16	36	1.90
43801--43826	13	2.0	13	100	0	52	38	15	15	30	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43783--43847	32	2.0	32	87	6	94	43	15	13	27	1.85
47896--47926	15	2.1	15	100	0	62	51	16	19	12	1.76
50130--50175	21	2.2	20	81	11	58	32	19	4	43	1.71
52553--52578	13	2.0	13	100	0	52	38	15	15	30	1.88
52535--52599	32	2.0	32	87	6	94	43	15	13	27	1.85
54174--54247	17	4.5	15	76	17	58	83	8	6	1	0.85
54174--54247	21	3.5	20	77	15	69	83	8	6	1	0.85
55374--55456	27	3.1	26	68	19	80	27	27	21	22	1.99
55365--55448	27	3.1	27	68	20	75	27	26	25	21	1.99
55344--56783	61	23.9	60	84	4	1667	25	27	20	27	1.99
55344--56783	243	6.0	243	85	4	1814	25	27	20	27	1.99
57377--57500	20	5.7	20	73	19	70	28	14	14	42	1.85
57427--57501	20	3.8	20	89	0	105	30	14	12	42	1.82
59786--59909	50	2.5	50	82	6	135	25	20	16	38	1.92
59849--60230	79	4.9	79	77	3	360	27	24	14	33	1.94
61179--61204	13	2.0	13	100	0	52	38	15	15	30	1.88
61161--61224	33	2.0	32	87	3	92	39	18	14	28	1.90
67269--67319	20	2.6	20	84	9	61	27	13	15	43	1.85
67370--67423	20	2.7	20	88	5	74	33	12	18	35	1.89
69483--69667	79	2.3	82	80	4	200	32	14	25	27	1.95
69598--69739	52	2.7	51	81	4	176	33	10	24	31	1.89
69598--69767	52	3.3	49	76	8	151	32	11	25	31	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
72272--72297	13	2.0	13	100	0	52	38	15	15	30	1.88
72251--72317	33	2.0	33	88	0	98	43	16	14	25	1.86
72337--72404	19	3.9	18	76	23	83	38	14	11	35	1.83
72359--72383	13	1.9	13	100	0	50	32	16	16	36	1.90
72340--72402	32	2.0	32	96	0	117	36	15	12	34	1.86
72440--72516	21	3.7	21	87	3	102	36	16	12	33	1.88
75372--75409	3	12.7	3	94	0	67	28	34	0	36	1.58
80822--80861	20	2.0	20	90	0	62	20	20	20	40	1.92
82510--82881	57	6.5	58	77	6	292	27	11	12	48	1.75
82510--82775	58	4.6	58	79	6	218	27	11	12	49	1.74
82500--82870	115	3.2	112	77	7	334	26	11	13	48	1.75
82510--82853	58	6.0	58	75	9	201	26	11	13	48	1.76
82782--82971	99	1.9	101	82	2	240	30	9	11	49	1.70
84913--85031	58	2.1	58	91	0	193	37	13	13	35	1.84
85507--85531	13	1.9	13	100	0	50	36	16	16	32	1.90
85487--85552	32	2.0	33	88	2	98	34	12	13	39	1.82
85597--85621	13	1.9	13	100	0	50	32	16	16	36	1.90
85630--85758	52	2.5	52	93	2	215	36	16	17	30	1.91
90379--90433	21	2.6	21	88	5	76	18	52	12	16	1.74
92353--92383	2	15.5	2	100	0	62	51	0	0	48	1.00
93169--93323	72	2.2	71	83	8	197	47	5	6	40	1.51
93462--93488	2	13.5	2	100	0	54	51	48	0	0	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93488--93530	2	21.5	2	100	0	86	51	0	0	48	1.00

Tables:   1

The End!