Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1728
Parameters: 2 7 7 80 10 50 1000
Length:  27539

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
109--164
26
2.1
28
93
6
98
42
14
10
32
1.80
2381--2405
2
12.5
2
100
0
50
52
0
0
48
1.00
3528--3568
21
2.0
21
85
9
57
46
2
2
48
1.28
5739--5769
15
2.1
15
100
0
62
38
12
12
35
1.82
9573--9597
13
1.9
13
100
0
50
36
16
16
32
1.90
9638--9704
33
2.0
33
88
0
98
40
13
11
34
1.81
9660--9684
13
1.9
13
100
0
50
32
16
16
36
1.90
11759--11889
51
2.6
51
83
2
147
27
15
13
43
1.84
12295--13142
28
30.0
28
79
6
798
29
28
16
24
1.97
13101--13535
32
13.6
31
80
10
389
28
31
17
21
1.96
13101--13535
129
3.4
127
84
5
526
28
31
17
21
1.96
14830--14869
21
1.9
21
85
10
55
15
17
12
55
1.70
16715--16776
28
2.2
28
86
11
83
37
27
12
22
1.91
16776--18171
28
49.7
29
80
5
1017
30
28
15
25
1.96
16785--18171
56
24.7
56
81
5
1336
30
28
15
25
1.96
16864--18137
531
2.4
531
95
1
2232
30
28
15
25
1.96
18109--18580
32
14.8
31
75
12
354
29
30
17
22
1.97
18126--18569
97
4.6
97
79
6
410
29
30
18
22
1.97
18130--18569
225
2.0
225
82
6
552
29
30
18
21
1.97
18688--18905
52
4.2
51
74
4
175
24
20
14
40
1.90
19570--19626
21
2.7
21
91
0
96
43
15
3
36
1.64
20694--20732
21
1.9
21
94
5
71
20
20
17
41
1.91
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
23302--23352
21
2.5
21
87
9
70
37
13
15
33
1.87
24744--24806
18
3.4
19
72
14
60
66
6
4
22
1.33
24962--24992
15
2.1
15
93
0
53
3
16
0
80
0.83
26320--26350
14
2.3
14
94
5
55
64
0
0
35
0.94
26784--26864
35
2.3
34
85
8
101
40
2
3
53
1.32

Tables:   1

The End!