Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1729
Parameters: 2 7 7 80 10 50 1000
Length:  65229

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3503--3561
31
1.9
30
89
3
91
37
0
0
62
0.95
3742--3774
2
16.5
2
100
0
66
51
0
0
48
1.00
4983--5301
148
2.2
146
83
6
403
43
8
15
32
1.77
6208--6250
22
2.0
22
86
9
61
58
2
0
39
1.11
7185--7217
2
16.5
2
93
0
57
48
3
0
48
1.17
7614--7656
2
21.5
2
100
0
86
51
0
0
48
1.00
8922--9323
147
2.7
150
84
5
485
42
10
14
32
1.80
11750--11788
18
2.1
19
90
4
62
51
5
5
38
1.46
12377--12677
156
1.9
156
83
4
383
44
8
14
31
1.76
13109--13147
3
12.7
3
89
5
60
66
0
0
33
0.92
13214--13248
17
2.0
18
88
5
54
14
8
0
77
0.99
16675--16725
24
2.1
24
100
0
102
25
7
17
49
1.74
17874--17943
24
2.8
24
77
14
70
45
22
10
21
1.81
17876--17972
27
3.7
27
80
4
101
45
23
9
21
1.81
17960--18017
26
2.3
25
88
5
82
25
13
25
34
1.93
19882--19927
21
2.1
22
88
4
67
19
28
19
32
1.96
22472--22541
24
2.8
24
77
14
70
45
22
10
21
1.81
22474--22570
27
3.7
27
80
4
101
45
23
9
21
1.81
22558--22615
26
2.3
25
88
5
82
25
13
25
34
1.93
23040--23066
2
13.5
2
100
0
54
48
0
0
51
1.00
23674--23769
16
5.6
16
67
18
59
55
2
0
42
1.11
23802--23856
24
2.2
25
87
9
78
61
3
1
32
1.24
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
26441--26479
16
2.5
15
79
4
51
30
2
2
64
1.21
34655--34682
14
2.0
14
100
0
56
42
7
7
42
1.59
38530--38718
103
1.8
104
88
3
292
27
17
17
37
1.93
41659--41687
2
14.5
2
100
0
58
0
48
0
51
1.00
42777--42837
28
2.2
28
80
11
72
54
9
1
34
1.44
43214--43261
25
2.0
26
84
12
66
50
0
2
47
1.12
43282--43311
14
2.1
15
93
6
53
33
0
0
66
0.92
43656--43758
20
5.3
20
61
23
58
55
1
2
39
1.26
57000--57092
41
2.3
41
92
0
150
10
49
3
36
1.54

Tables:   1

The End!