Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold173
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 2040036
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
File 10 of 16
Found at i:1242255 original size:14 final size:14
Alignment explanation
Indices: 1242236--1242262 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
1242226 TCTATTCTTG
1242236 CTCAAGCATAAGGT
1 CTCAAGCATAAGGT
1242250 CTCAAGCATAAGG
1 CTCAAGCATAAGG
1242263 CGGGGACTTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.37, C:0.22, G:0.22, T:0.19
Consensus pattern (14 bp):
CTCAAGCATAAGGT
Found at i:1243147 original size:18 final size:18
Alignment explanation
Indices: 1243120--1243203 Score: 123
Period size: 18 Copynumber: 4.7 Consensus size: 18
1243110 AAATTTTAGG
* * *
1243120 AATCACAGATTTTCTAAG
1 AATCATAGATTTTTTAAA
*
1243138 AATCTTAGATTTTTTAAA
1 AATCATAGATTTTTTAAA
1243156 AATCATAGATTTTTTAAA
1 AATCATAGATTTTTTAAA
*
1243174 AATCATAGATTTTTTAAG
1 AATCATAGATTTTTTAAA
1243192 AATCATAGATTT
1 AATCATAGATTT
1243204 CTAGAATTAT
Statistics
Matches: 60, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 60 1.00
ACGTcount: A:0.40, C:0.08, G:0.08, T:0.43
Consensus pattern (18 bp):
AATCATAGATTTTTTAAA
Found at i:1243160 original size:36 final size:35
Alignment explanation
Indices: 1243088--1243210 Score: 130
Period size: 36 Copynumber: 3.6 Consensus size: 35
1243078 GATCAACATT
* *
1243088 AATCACAGATTTTCTAAGAATC-A-A-ATTTTAGG
1 AATCACAGATTTTCTAAGAATCTAGATTTTTTAAG
*
1243120 AATCACAGATTTTCTAAGAATCTTAGATTTTTTAAA
1 AATCACAGATTTTCTAAGAATC-TAGATTTTTTAAG
* * *
1243156 AATCATAGATTTTTTAAAAATCATAGATTTTTTAAG
1 AATCACAGATTTTCTAAGAATC-TAGATTTTTTAAG
*
1243192 AATCATAGA-TTTCT-AGAAT
1 AATCACAGATTTTCTAAGAAT
1243211 TATATATTTC
Statistics
Matches: 77, Mismatches: 10, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
32 22 0.29
34 5 0.06
35 5 0.06
36 45 0.58
ACGTcount: A:0.41, C:0.10, G:0.10, T:0.40
Consensus pattern (35 bp):
AATCACAGATTTTCTAAGAATCTAGATTTTTTAAG
Found at i:1243219 original size:16 final size:16
Alignment explanation
Indices: 1243088--1243251 Score: 75
Period size: 18 Copynumber: 9.8 Consensus size: 16
1243078 GATCAACATT
*
1243088 AATCACAGATTTTCTAAG
1 AATCATAGA-TTTCT-AG
1243106 AATCA-A-ATTT-TAGG
1 AATCATAGATTTCTA-G
*
1243120 AATCACAGATTTTCTAAG
1 AATCATAGA-TTTCT-AG
* * *
1243138 AATCTTAGATTTTTTAAA
1 AATCATAGA-TTTCT-AG
* *
1243156 AATCATAGATTTTTTAAA
1 AATCATAGA-TTTCT-AG
*
1243174 AATCATAGATTTTTTAAG
1 AATCATAGA-TTTCT-AG
1243192 AATCATAGATTTCTAG
1 AATCATAGATTTCTAG
* *
1243208 AATTATATATTTC-AG
1 AATCATAGATTTCTAG
* *
1243223 TAATCATAGATTTTTAT
1 -AATCATAGATTTCTAG
*
1243240 AATAATAGATTT
1 AATCATAGATTT
1243252 TCAACTATAA
Statistics
Matches: 124, Mismatches: 14, Indels: 18
0.79 0.09 0.12
Matches are distributed among these distances:
13 1 0.01
14 7 0.06
15 6 0.05
16 36 0.29
17 9 0.07
18 64 0.52
19 1 0.01
ACGTcount: A:0.40, C:0.09, G:0.09, T:0.42
Consensus pattern (16 bp):
AATCATAGATTTCTAG
Found at i:1244997 original size:20 final size:20
Alignment explanation
Indices: 1244972--1245025 Score: 108
Period size: 20 Copynumber: 2.7 Consensus size: 20
1244962 TTTTTATTTG
1244972 ATTAAATTTTATCATAAAAT
1 ATTAAATTTTATCATAAAAT
1244992 ATTAAATTTTATCATAAAAT
1 ATTAAATTTTATCATAAAAT
1245012 ATTAAATTTTATCA
1 ATTAAATTTTATCA
1245026 AATTTTATCA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 34 1.00
ACGTcount: A:0.48, C:0.06, G:0.00, T:0.46
Consensus pattern (20 bp):
ATTAAATTTTATCATAAAAT
Found at i:1245407 original size:17 final size:17
Alignment explanation
Indices: 1245385--1245417 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
1245375 ATATAATGAT
1245385 AAATATTAATTA-AAATA
1 AAATA-TAATTATAAATA
1245402 AAATATAATTATAAAT
1 AAATATAATTATAAAT
1245418 TTTAATACTT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
17 9 0.60
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (17 bp):
AAATATAATTATAAATA
Found at i:1246157 original size:19 final size:18
Alignment explanation
Indices: 1246133--1246174 Score: 66
Period size: 19 Copynumber: 2.3 Consensus size: 18
1246123 ATCACATCTC
*
1246133 TAATTTTATTTTATTATTT
1 TAATTTTATTTTAAT-TTT
1246152 TAATTTTATTTTAATTTT
1 TAATTTTATTTTAATTTT
1246170 TAATT
1 TAATT
1246175 AATTTTTTAA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
18 8 0.36
19 14 0.64
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (18 bp):
TAATTTTATTTTAATTTT
Found at i:1246162 original size:11 final size:11
Alignment explanation
Indices: 1246133--1246169 Score: 53
Period size: 11 Copynumber: 3.6 Consensus size: 11
1246123 ATCACATCTC
1246133 TAATTTTATTT
1 TAATTTTATTT
1246144 T-A--TTATTT
1 TAATTTTATTT
1246152 TAATTTTATTT
1 TAATTTTATTT
1246163 TAATTTT
1 TAATTTT
1246170 TAATTAATTT
Statistics
Matches: 23, Mismatches: 0, Indels: 6
0.79 0.00 0.21
Matches are distributed among these distances:
8 7 0.30
9 1 0.04
10 1 0.04
11 14 0.61
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (11 bp):
TAATTTTATTT
Found at i:1246665 original size:2 final size:2
Alignment explanation
Indices: 1246660--1246695 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
1246650 GCGAGTGATC
1246660 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1246696 TTATGCAATT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:1250433 original size:21 final size:20
Alignment explanation
Indices: 1250408--1250448 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
1250398 TTTATAAAGT
1250408 AAAATTGATCTCTTTTTAAAA
1 AAAATTGAT-TCTTTTTAAAA
*
1250429 AAAATTGATTTTTTTTAAAA
1 AAAATTGATTCTTTTTAAAA
1250449 GTTGATCAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 10 0.53
21 9 0.47
ACGTcount: A:0.44, C:0.05, G:0.05, T:0.46
Consensus pattern (20 bp):
AAAATTGATTCTTTTTAAAA
Found at i:1254573 original size:3 final size:3
Alignment explanation
Indices: 1254522--1254552 Score: 62
Period size: 3 Copynumber: 10.3 Consensus size: 3
1254512 TGATACTATC
1254522 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
1254553 ATATTTTATT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:1254947 original size:6 final size:6
Alignment explanation
Indices: 1254939--1254972 Score: 50
Period size: 6 Copynumber: 5.7 Consensus size: 6
1254929 TTTGTTTTTG
* *
1254939 TCTTCG TCTTCA TCTTCA TCTTCA TTTTCA TCTT
1 TCTTCA TCTTCA TCTTCA TCTTCA TCTTCA TCTT
1254973 TGTTTTTTAT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
6 25 1.00
ACGTcount: A:0.12, C:0.29, G:0.03, T:0.56
Consensus pattern (6 bp):
TCTTCA
Found at i:1254990 original size:12 final size:12
Alignment explanation
Indices: 1254975--1254999 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
1254965 TTCATCTTTG
1254975 TTTTTTATTTTA
1 TTTTTTATTTTA
1254987 TTTTTTATTTTA
1 TTTTTTATTTTA
1254999 T
1 T
1255000 ATATTTATAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.16, C:0.00, G:0.00, T:0.84
Consensus pattern (12 bp):
TTTTTTATTTTA
Found at i:1255030 original size:9 final size:8
Alignment explanation
Indices: 1254995--1255043 Score: 57
Period size: 8 Copynumber: 6.0 Consensus size: 8
1254985 TATTTTTTAT
1254995 TTTATATA
1 TTTATATA
1255003 TTTATATCA
1 TTTATAT-A
1255012 TATT-TATA
1 T-TTATATA
1255020 TTTAATATA
1 TTT-ATATA
1255029 TTT-TATA
1 TTTATATA
1255036 TTTATATA
1 TTTATATA
1255044 AATACTGATG
Statistics
Matches: 36, Mismatches: 0, Indels: 10
0.78 0.00 0.22
Matches are distributed among these distances:
7 9 0.25
8 13 0.36
9 12 0.33
10 2 0.06
ACGTcount: A:0.37, C:0.02, G:0.00, T:0.61
Consensus pattern (8 bp):
TTTATATA
Found at i:1255035 original size:7 final size:7
Alignment explanation
Indices: 1254975--1255042 Score: 50
Period size: 7 Copynumber: 9.1 Consensus size: 7
1254965 TTCATCTTTG
*
1254975 TTTTTTA
1 TTTTATA
*
1254982 TTTTATT
1 TTTTATA
1254989 TTTTAT-
1 TTTTATA
1254995 TTTATATA
1 TTT-TATA
1255003 TTTATATCA
1 TTT-TAT-A
1255012 TATTTATA
1 T-TTTATA
1255020 TTTAATATA
1 TTT--TATA
1255029 TTTTATA
1 TTTTATA
1255036 -TTTATA
1 TTTTATA
1255042 T
1 T
1255043 AAATACTGAT
Statistics
Matches: 52, Mismatches: 2, Indels: 14
0.76 0.03 0.21
Matches are distributed among these distances:
6 9 0.17
7 20 0.38
8 9 0.17
9 12 0.23
10 2 0.04
ACGTcount: A:0.29, C:0.01, G:0.00, T:0.69
Consensus pattern (7 bp):
TTTTATA
Found at i:1255241 original size:20 final size:20
Alignment explanation
Indices: 1255218--1255255 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
1255208 TAATTGTACT
1255218 TAAATTATT-ATATATTTATA
1 TAAATT-TTAATATATTTATA
1255238 TAAATTTTAATATATTTA
1 TAAATTTTAATATATTTA
1255256 AATATTTATA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
19 2 0.12
20 15 0.88
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (20 bp):
TAAATTTTAATATATTTATA
Found at i:1255266 original size:16 final size:17
Alignment explanation
Indices: 1255217--1255271 Score: 51
Period size: 16 Copynumber: 3.1 Consensus size: 17
1255207 ATAATTGTAC
1255217 TTAAATTATTATATATTTAT
1 TTAAATT-TTA-ATA-TTAT
*
1255237 ATAAATTTTAATA-TAT
1 TTAAATTTTAATATTAT
1255253 TTAAATATTT-ATATTAT
1 TTAAAT-TTTAATATTAT
1255270 TT
1 TT
1255272 TTATAATATT
Statistics
Matches: 31, Mismatches: 2, Indels: 7
0.77 0.05 0.17
Matches are distributed among these distances:
16 11 0.35
17 8 0.26
18 3 0.10
19 3 0.10
20 6 0.19
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (17 bp):
TTAAATTTTAATATTAT
Found at i:1255672 original size:20 final size:18
Alignment explanation
Indices: 1255647--1255695 Score: 53
Period size: 20 Copynumber: 2.6 Consensus size: 18
1255637 CAAATACATT
1255647 AAAAATATAAAATAAATATA
1 AAAAATATAAAA-AAATA-A
*
1255667 AAAAATATTTAAAAAATAA
1 AAAAATA-TAAAAAAATAA
*
1255686 AATAATATAA
1 AAAAATATAA
1255696 TTATAAAAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 4
0.78 0.09 0.12
Matches are distributed among these distances:
18 2 0.08
19 7 0.28
20 12 0.48
21 4 0.16
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (18 bp):
AAAAATATAAAAAAATAA
Found at i:1257127 original size:34 final size:34
Alignment explanation
Indices: 1257072--1257288 Score: 285
Period size: 34 Copynumber: 6.4 Consensus size: 34
1257062 AAGCTTCATC
*
1257072 TGTTGATTAAAT-GGTGATTTGGTAGTTTACCAT
1 TGTTGATTAAATGGGTGATTTGGTAGCTTACCAT
* * *
1257105 TGTTGATTAAATGGGTGATTTGGTGGTTTGCCAT
1 TGTTGATTAAATGGGTGATTTGGTAGCTTACCAT
* *
1257139 TGTTGACTAAATGGGAGATTTGGTAGCTTACCAT
1 TGTTGATTAAATGGGTGATTTGGTAGCTTACCAT
* **
1257173 TGTTGATTAAATGAGAAATTTGGTAGCTTACCAT
1 TGTTGATTAAATGGGTGATTTGGTAGCTTACCAT
* *
1257207 TATTGATTAAATGGGTGATTTGGTGGCTTACCAT
1 TGTTGATTAAATGGGTGATTTGGTAGCTTACCAT
* * *
1257241 TGTTGACTAAAT-GGTAGATTTGGTAGGTTGCCAT
1 TGTTGATTAAATGGGT-GATTTGGTAGCTTACCAT
1257275 TGTTGATTAAATGG
1 TGTTGATTAAATGG
1257289 TGGTTTTTAC
Statistics
Matches: 160, Mismatches: 21, Indels: 4
0.86 0.11 0.02
Matches are distributed among these distances:
33 15 0.09
34 144 0.90
35 1 0.01
ACGTcount: A:0.25, C:0.08, G:0.27, T:0.41
Consensus pattern (34 bp):
TGTTGATTAAATGGGTGATTTGGTAGCTTACCAT
Found at i:1257264 original size:102 final size:101
Alignment explanation
Indices: 1257072--1257288 Score: 344
Period size: 102 Copynumber: 2.1 Consensus size: 101
1257062 AAGCTTCATC
** * * * *
1257072 TGTTGATTAAATGGTGATTTGGTAGTTTACCATTGTTGATTAAATGGGTGATTTGGTGGTTTGCC
1 TGTTGATTAAATGGAAATTTGGTAGCTTACCATTATTGATTAAATGGGTGATTTGGTGGCTTACC
1257137 ATTGTTGACTAAATGGGAGATTTGGTAGCTTACCAT
66 ATTGTTGACTAAATGGGAGATTTGGTAGCTTACCAT
1257173 TGTTGATTAAATGAGAAATTTGGTAGCTTACCATTATTGATTAAATGGGTGATTTGGTGGCTTAC
1 TGTTGATTAAATG-GAAATTTGGTAGCTTACCATTATTGATTAAATGGGTGATTTGGTGGCTTAC
* * *
1257238 CATTGTTGACTAAATGGTAGATTTGGTAGGTTGCCAT
65 CATTGTTGACTAAATGGGAGATTTGGTAGCTTACCAT
1257275 TGTTGATTAAATGG
1 TGTTGATTAAATGG
1257289 TGGTTTTTAC
Statistics
Matches: 106, Mismatches: 9, Indels: 2
0.91 0.08 0.02
Matches are distributed among these distances:
101 14 0.13
102 92 0.87
ACGTcount: A:0.25, C:0.08, G:0.27, T:0.41
Consensus pattern (101 bp):
TGTTGATTAAATGGAAATTTGGTAGCTTACCATTATTGATTAAATGGGTGATTTGGTGGCTTACC
ATTGTTGACTAAATGGGAGATTTGGTAGCTTACCAT
Found at i:1261754 original size:34 final size:34
Alignment explanation
Indices: 1261697--1261915 Score: 280
Period size: 34 Copynumber: 6.5 Consensus size: 34
1261687 AAGTGGGAGA
*
1261697 ATTGTTGATTAAAT-GGTGATTTGGTAGTTTACC
1 ATTGTTGATTAAATGGGTGATTTGGTAGCTTACC
* * *
1261730 ATTGTTGATTAAATGGGTGATTTGGTGGTTTGCC
1 ATTGTTGATTAAATGGGTGATTTGGTAGCTTACC
* *
1261764 ATTGTTGACTAAATGGGAGATTTGGTAGCTTACC
1 ATTGTTGATTAAATGGGTGATTTGGTAGCTTACC
* * **
1261798 ATTGTTAATTAAATGAGAAATTTGGTAGCTTACC
1 ATTGTTGATTAAATGGGTGATTTGGTAGCTTACC
* *
1261832 ATTATTGATTAAATGGGTGATTTGGTGGCTTACC
1 ATTGTTGATTAAATGGGTGATTTGGTAGCTTACC
* * *
1261866 ATTGTTGACTAAAT-GGTAGATTTGGTAGGTTGCC
1 ATTGTTGATTAAATGGGT-GATTTGGTAGCTTACC
1261900 ATTGTTGATTAAATGG
1 ATTGTTGATTAAATGG
1261916 TGGTTTTTAC
Statistics
Matches: 160, Mismatches: 23, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
33 17 0.11
34 142 0.89
35 1 0.01
ACGTcount: A:0.26, C:0.08, G:0.26, T:0.41
Consensus pattern (34 bp):
ATTGTTGATTAAATGGGTGATTTGGTAGCTTACC
Found at i:1261840 original size:102 final size:101
Alignment explanation
Indices: 1261697--1261915 Score: 339
Period size: 102 Copynumber: 2.2 Consensus size: 101
1261687 AAGTGGGAGA
** * * * *
1261697 ATTGTTGATTAAATGGTGATTTGGTAGTTTACCATTGTTGATTAAATGGGTGATTTGGTGGTTTG
1 ATTGTTGATTAAATGGAAATTTGGTAGCTTACCATTATTGATTAAATGGGTGATTTGGTGGCTTA
1261762 CCATTGTTGACTAAATGGGAGATTTGGTAGCTTACC
66 CCATTGTTGACTAAATGGGAGATTTGGTAGCTTACC
*
1261798 ATTGTTAATTAAATGAGAAATTTGGTAGCTTACCATTATTGATTAAATGGGTGATTTGGTGGCTT
1 ATTGTTGATTAAATG-GAAATTTGGTAGCTTACCATTATTGATTAAATGGGTGATTTGGTGGCTT
* * *
1261863 ACCATTGTTGACTAAATGGTAGATTTGGTAGGTTGCC
65 ACCATTGTTGACTAAATGGGAGATTTGGTAGCTTACC
1261900 ATTGTTGATTAAATGG
1 ATTGTTGATTAAATGG
1261916 TGGTTTTTAC
Statistics
Matches: 106, Mismatches: 11, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
101 15 0.14
102 91 0.86
ACGTcount: A:0.26, C:0.08, G:0.26, T:0.41
Consensus pattern (101 bp):
ATTGTTGATTAAATGGAAATTTGGTAGCTTACCATTATTGATTAAATGGGTGATTTGGTGGCTTA
CCATTGTTGACTAAATGGGAGATTTGGTAGCTTACC
Found at i:1262474 original size:24 final size:24
Alignment explanation
Indices: 1262447--1262522 Score: 66
Period size: 25 Copynumber: 3.0 Consensus size: 24
1262437 TCATATTACT
1262447 TATGTATAATGAAAAAAATTAAAA
1 TATGTATAATGAAAAAAATTAAAA
*
1262471 TATGATATGAT-ATAAAAAATTAAGTAA
1 TATG-TATAATGA-AAAAAATTAA--AA
* *
1262498 TATATA-AATGAAAACATATTAAAA
1 TATGTATAATGAAAA-AAATTAAAA
1262522 T
1 T
1262523 CTAATAATAT
Statistics
Matches: 42, Mismatches: 4, Indels: 12
0.72 0.07 0.21
Matches are distributed among these distances:
24 8 0.19
25 20 0.48
26 9 0.21
27 5 0.12
ACGTcount: A:0.59, C:0.01, G:0.08, T:0.32
Consensus pattern (24 bp):
TATGTATAATGAAAAAAATTAAAA
Found at i:1262566 original size:9 final size:8
Alignment explanation
Indices: 1262542--1262596 Score: 51
Period size: 8 Copynumber: 7.0 Consensus size: 8
1262532 TGTCAGTATT
1262542 TATATAAA
1 TATATAAA
1262550 TATA-AAA
1 TATATAAA
*
1262557 TATATTAA
1 TATATAAA
* *
1262565 -ATATGAG
1 TATATAAA
*
1262572 TATAAAAA
1 TATATAAA
1262580 TAATATAAA
1 T-ATATAAA
1262589 TATATAAA
1 TATATAAA
1262597 ATAAAAAATA
Statistics
Matches: 37, Mismatches: 7, Indels: 6
0.74 0.14 0.12
Matches are distributed among these distances:
7 12 0.32
8 18 0.49
9 7 0.19
ACGTcount: A:0.62, C:0.00, G:0.04, T:0.35
Consensus pattern (8 bp):
TATATAAA
Found at i:1262600 original size:13 final size:12
Alignment explanation
Indices: 1262575--1262614 Score: 53
Period size: 12 Copynumber: 3.2 Consensus size: 12
1262565 ATATGAGTAT
*
1262575 AAAAATAATATA
1 AAAAATAAAATA
*
1262587 AATATATAAAATA
1 AA-AAATAAAATA
1262600 AAAAATAAAATA
1 AAAAATAAAATA
1262612 AAA
1 AAA
1262615 GACAAAGACC
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
12 14 0.58
13 10 0.42
ACGTcount: A:0.78, C:0.00, G:0.00, T:0.23
Consensus pattern (12 bp):
AAAAATAAAATA
Found at i:1262640 original size:24 final size:24
Alignment explanation
Indices: 1262612--1262664 Score: 61
Period size: 24 Copynumber: 2.2 Consensus size: 24
1262602 AAATAAAATA
* *
1262612 AAAGACAAAGACCAAGACGAAAAC
1 AAAGACAAAGACAAAGACAAAAAC
* **
1262636 GAAGATGAAGACAAAGACAAAAAC
1 AAAGACAAAGACAAAGACAAAAAC
1262660 AAAGA
1 AAAGA
1262665 TGAAGATGAA
Statistics
Matches: 23, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.64, C:0.15, G:0.19, T:0.02
Consensus pattern (24 bp):
AAAGACAAAGACAAAGACAAAAAC
Found at i:1262649 original size:30 final size:30
Alignment explanation
Indices: 1262613--1262677 Score: 87
Period size: 30 Copynumber: 2.2 Consensus size: 30
1262603 AATAAAATAA
* *
1262613 AAGACAAAGACCAAGACGAAA-ACGAAGATG
1 AAGACAAAGACAAAAAC-AAAGACGAAGATG
*
1262643 AAGACAAAGACAAAAACAAAGATGAAGATG
1 AAGACAAAGACAAAAACAAAGACGAAGATG
1262673 AAGAC
1 AAGAC
1262678 GAACACTTAG
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
29 3 0.10
30 28 0.90
ACGTcount: A:0.60, C:0.14, G:0.22, T:0.05
Consensus pattern (30 bp):
AAGACAAAGACAAAAACAAAGACGAAGATG
Found at i:1262677 original size:24 final size:24
Alignment explanation
Indices: 1262619--1262670 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
1262609 ATAAAAGACA
* * *
1262619 AAGACCAAGACGAAAACGAAGATG
1 AAGACAAAGACAAAAACAAAGATG
1262643 AAGACAAAGACAAAAACAAAGATG
1 AAGACAAAGACAAAAACAAAGATG
1262667 AAGA
1 AAGA
1262671 TGAAGACGAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.62, C:0.13, G:0.21, T:0.04
Consensus pattern (24 bp):
AAGACAAAGACAAAAACAAAGATG
Found at i:1263077 original size:12 final size:12
Alignment explanation
Indices: 1263062--1263093 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
1263052 TATTATTATT
1263062 ATTATGATGATG
1 ATTATGATGATG
1263074 ATTATGATGATG
1 ATTATGATGATG
*
1263086 ATGATGAT
1 ATTATGAT
1263094 AACATCAAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.34, C:0.00, G:0.25, T:0.41
Consensus pattern (12 bp):
ATTATGATGATG
Found at i:1273429 original size:1 final size:1
Alignment explanation
Indices: 1273423--1273481 Score: 64
Period size: 1 Copynumber: 59.0 Consensus size: 1
1273413 AAATCTTCAC
* ** * * *
1273423 TTTTTTTTTTGTTTTTTTTTTTTTTTTTTTCCTTTTTTTTGTTTTGTTTTTTTCTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
1273482 CCAATTGCCA
Statistics
Matches: 48, Mismatches: 10, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
1 48 1.00
ACGTcount: A:0.00, C:0.05, G:0.05, T:0.90
Consensus pattern (1 bp):
T
Found at i:1273460 original size:30 final size:30
Alignment explanation
Indices: 1273425--1273481 Score: 96
Period size: 30 Copynumber: 1.9 Consensus size: 30
1273415 ATCTTCACTT
* *
1273425 TTTTTTTTGTTTTTTTTTTTTTTTTTTTCC
1 TTTTTTTTGTTTTGTTTTTTTCTTTTTTCC
1273455 TTTTTTTTGTTTTGTTTTTTTCTTTTT
1 TTTTTTTTGTTTTGTTTTTTTCTTTTT
1273482 CCAATTGCCA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.00, C:0.05, G:0.05, T:0.89
Consensus pattern (30 bp):
TTTTTTTTGTTTTGTTTTTTTCTTTTTTCC
Found at i:1273472 original size:29 final size:30
Alignment explanation
Indices: 1273425--1273483 Score: 93
Period size: 29 Copynumber: 2.0 Consensus size: 30
1273415 ATCTTCACTT
* *
1273425 TTTTTTTTGTTTTTTTTTTTTTTTTTTTCC
1 TTTTTTTTGTTTTTGTTTTTTTCTTTTTCC
1273455 TTTTTTTTG-TTTTGTTTTTTTCTTTTTCC
1 TTTTTTTTGTTTTTGTTTTTTTCTTTTTCC
1273484 AATTGCCATG
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
29 18 0.67
30 9 0.33
ACGTcount: A:0.00, C:0.08, G:0.05, T:0.86
Consensus pattern (30 bp):
TTTTTTTTGTTTTTGTTTTTTTCTTTTTCC
Found at i:1281777 original size:15 final size:14
Alignment explanation
Indices: 1281742--1281793 Score: 50
Period size: 15 Copynumber: 3.6 Consensus size: 14
1281732 TAATGTTTTA
1281742 ATTTTATTTTTCTT
1 ATTTTATTTTTCTT
**
1281756 ACCTTATTTTTCATT
1 ATTTTATTTTTC-TT
* *
1281771 ATTTTATTGATTCTA
1 ATTTTATT-TTTCTT
1281786 ATTTTATT
1 ATTTTATT
1281794 ATTTATTTAT
Statistics
Matches: 30, Mismatches: 6, Indels: 3
0.77 0.15 0.08
Matches are distributed among these distances:
14 10 0.33
15 17 0.57
16 3 0.10
ACGTcount: A:0.21, C:0.10, G:0.02, T:0.67
Consensus pattern (14 bp):
ATTTTATTTTTCTT
Found at i:1282635 original size:2 final size:2
Alignment explanation
Indices: 1282628--1282654 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
1282618 ACCTTTTTCC
1282628 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1282655 GAACAAATTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:1285853 original size:27 final size:28
Alignment explanation
Indices: 1285792--1285862 Score: 101
Period size: 27 Copynumber: 2.6 Consensus size: 28
1285782 AAACAAGCCT
*
1285792 CCATATTTGACAAATC-CAAAAGAAACCA
1 CCATTTTTGACAAA-CACAAAAGAAACCA
*
1285820 CCATTTTTGACAAACACAAAA-TAACCA
1 CCATTTTTGACAAACACAAAAGAAACCA
1285847 CCATTTTTGACAAACA
1 CCATTTTTGACAAACA
1285863 AATGGGTGGT
Statistics
Matches: 40, Mismatches: 2, Indels: 3
0.89 0.04 0.07
Matches are distributed among these distances:
27 22 0.55
28 18 0.45
ACGTcount: A:0.46, C:0.25, G:0.06, T:0.23
Consensus pattern (28 bp):
CCATTTTTGACAAACACAAAAGAAACCA
Found at i:1287780 original size:21 final size:22
Alignment explanation
Indices: 1287742--1287787 Score: 67
Period size: 21 Copynumber: 2.1 Consensus size: 22
1287732 ATCTGTTGAA
**
1287742 ACTCCACCTGTTTTGGAGTA-T
1 ACTCCACCTGTTGCGGAGTACT
1287763 ACTCCACCTGTTGCGGAGTACT
1 ACTCCACCTGTTGCGGAGTACT
1287785 ACT
1 ACT
1287788 TGTCTGAACA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
21 18 0.82
22 4 0.18
ACGTcount: A:0.20, C:0.28, G:0.20, T:0.33
Consensus pattern (22 bp):
ACTCCACCTGTTGCGGAGTACT
Found at i:1290262 original size:20 final size:20
Alignment explanation
Indices: 1290234--1290282 Score: 62
Period size: 20 Copynumber: 2.5 Consensus size: 20
1290224 AGAAAGAATT
1290234 GAAGAGGGATACAAGAGAGG
1 GAAGAGGGATACAAGAGAGG
* * **
1290254 GATGAGGGATGCTTGAGAGG
1 GAAGAGGGATACAAGAGAGG
1290274 GAAGAGGGA
1 GAAGAGGGA
1290283 ACCTCTATTT
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.37, C:0.04, G:0.49, T:0.10
Consensus pattern (20 bp):
GAAGAGGGATACAAGAGAGG
Found at i:1290420 original size:27 final size:28
Alignment explanation
Indices: 1290359--1290429 Score: 101
Period size: 27 Copynumber: 2.6 Consensus size: 28
1290349 AAACAAGCCT
*
1290359 CCATATTTGACAAATC-CAAAAGAAACCA
1 CCATTTTTGACAAA-CACAAAAGAAACCA
*
1290387 CCATTTTTGACAAACACAAAA-TAACCA
1 CCATTTTTGACAAACACAAAAGAAACCA
1290414 CCATTTTTGACAAACA
1 CCATTTTTGACAAACA
1290430 AATAGGTGGC
Statistics
Matches: 40, Mismatches: 2, Indels: 3
0.89 0.04 0.07
Matches are distributed among these distances:
27 22 0.55
28 18 0.45
ACGTcount: A:0.46, C:0.25, G:0.06, T:0.23
Consensus pattern (28 bp):
CCATTTTTGACAAACACAAAAGAAACCA
Found at i:1292418 original size:16 final size:17
Alignment explanation
Indices: 1292384--1292416 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
1292374 ATAATAAAAA
1292384 ATTTATAATTATATTTT
1 ATTTATAATTATATTTT
1292401 ATTT-TAATTGATATTT
1 ATTTATAATT-ATATTT
1292417 ATAATTATAT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 5 0.33
17 10 0.67
ACGTcount: A:0.33, C:0.00, G:0.03, T:0.64
Consensus pattern (17 bp):
ATTTATAATTATATTTT
Found at i:1294380 original size:18 final size:18
Alignment explanation
Indices: 1294357--1294392 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
1294347 AACTCAAAAG
1294357 AGTTTGAACTTGAAATGA
1 AGTTTGAACTTGAAATGA
* *
1294375 AGTTTGAATTTTAAATGA
1 AGTTTGAACTTGAAATGA
1294393 TTTAAATTAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.39, C:0.03, G:0.19, T:0.39
Consensus pattern (18 bp):
AGTTTGAACTTGAAATGA
Found at i:1295927 original size:34 final size:34
Alignment explanation
Indices: 1295873--1295985 Score: 156
Period size: 34 Copynumber: 3.4 Consensus size: 34
1295863 CTAGAAGAGG
*
1295873 TGTTGATTAAAT-GGTGATTTAGTAGTTTATCAT
1 TGTTGATTAAATGGGTGATTTAGTAGTTTACCAT
* *
1295906 TGTTAATTAAATGGGTGATTTAGTGGTTTACCAT
1 TGTTGATTAAATGGGTGATTTAGTAGTTTACCAT
* * * *
1295940 TGTTGACTAAATGGGTGATTTGGTAGGTTGCCAT
1 TGTTGATTAAATGGGTGATTTAGTAGTTTACCAT
1295974 TGTTGATTAAAT
1 TGTTGATTAAAT
1295986 TGTGGTTTTT
Statistics
Matches: 69, Mismatches: 10, Indels: 1
0.86 0.12 0.01
Matches are distributed among these distances:
33 11 0.16
34 58 0.84
ACGTcount: A:0.26, C:0.05, G:0.25, T:0.44
Consensus pattern (34 bp):
TGTTGATTAAATGGGTGATTTAGTAGTTTACCAT
Found at i:1296316 original size:19 final size:19
Alignment explanation
Indices: 1296292--1296345 Score: 81
Period size: 19 Copynumber: 2.8 Consensus size: 19
1296282 GGTTGTCGAG
1296292 GTACTATTCACGTATATAA
1 GTACTATTCACGTATATAA
**
1296311 GTACTATTCACGTATATGG
1 GTACTATTCACGTATATAA
*
1296330 GTACTATTCAAGTATA
1 GTACTATTCACGTATA
1296346 CGGTTACTGT
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
19 32 1.00
ACGTcount: A:0.33, C:0.15, G:0.15, T:0.37
Consensus pattern (19 bp):
GTACTATTCACGTATATAA
Found at i:1296353 original size:19 final size:19
Alignment explanation
Indices: 1296291--1296353 Score: 63
Period size: 19 Copynumber: 3.3 Consensus size: 19
1296281 TGGTTGTCGA
* **
1296291 GGTACTATTCACGTATATA
1 GGTACTATTCAAGTATACG
* * *
1296310 AGTACTATTCACGTATATG
1 GGTACTATTCAAGTATACG
1296329 GGTACTATTCAAGTATACG
1 GGTACTATTCAAGTATACG
*
1296348 GTTACT
1 GGTACT
1296354 GTACACGTGA
Statistics
Matches: 38, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 38 1.00
ACGTcount: A:0.30, C:0.16, G:0.17, T:0.37
Consensus pattern (19 bp):
GGTACTATTCAAGTATACG
Found at i:1300477 original size:34 final size:34
Alignment explanation
Indices: 1300420--1300536 Score: 155
Period size: 34 Copynumber: 3.5 Consensus size: 34
1300410 AAGTAGGAGA
*
1300420 ATTGTTGATTAAAT-GGTGATTTGGTAGTTTACC
1 ATTGTTGATTAAATGGGTGATTTGGTAGCTTACC
*
1300453 ATTGTTGATTAAATGGGTGATTTGGTGGCTTACC
1 ATTGTTGATTAAATGGGTGATTTGGTAGCTTACC
* * * **
1300487 ATTGTTGACTAAATGGGAGATTTGGTAGGTTGTC
1 ATTGTTGATTAAATGGGTGATTTGGTAGCTTACC
*
1300521 ATTATTGATTAAATGG
1 ATTGTTGATTAAATGG
1300537 TGGTTTTTAC
Statistics
Matches: 73, Mismatches: 10, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
33 14 0.19
34 59 0.81
ACGTcount: A:0.25, C:0.06, G:0.27, T:0.42
Consensus pattern (34 bp):
ATTGTTGATTAAATGGGTGATTTGGTAGCTTACC
Found at i:1302109 original size:17 final size:17
Alignment explanation
Indices: 1302075--1302108 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
1302065 TATTATTTGA
1302075 TCTTTTAAGTTACATTT
1 TCTTTTAAGTTACATTT
*
1302092 TCTTTTAATTTA-ATTT
1 TCTTTTAAGTTACATTT
1302108 T
1 T
1302109 TATATTTGTA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 5 0.31
17 11 0.69
ACGTcount: A:0.24, C:0.09, G:0.03, T:0.65
Consensus pattern (17 bp):
TCTTTTAAGTTACATTT
Found at i:1304475 original size:2 final size:2
Alignment explanation
Indices: 1304468--1304505 Score: 76
Period size: 2 Copynumber: 19.0 Consensus size: 2
1304458 TTGATTTAGA
1304468 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1304506 GACTTGCTAT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:1307815 original size:25 final size:25
Alignment explanation
Indices: 1307783--1307839 Score: 89
Period size: 24 Copynumber: 2.3 Consensus size: 25
1307773 AAAAAATGAG
*
1307783 TAATAAAAATATAAAGGTTAAACTA
1 TAATAAAAATATAAAAGTTAAACTA
*
1307808 TAAT-AAAATATAAAAGTTGAACTA
1 TAATAAAAATATAAAAGTTAAACTA
1307832 TAATAAAA
1 TAATAAAA
1307840 GATGAGAAAT
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
24 22 0.76
25 7 0.24
ACGTcount: A:0.61, C:0.04, G:0.07, T:0.28
Consensus pattern (25 bp):
TAATAAAAATATAAAAGTTAAACTA
Found at i:1307881 original size:2 final size:2
Alignment explanation
Indices: 1307874--1307901 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
1307864 GCAATTTCTC
1307874 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1307902 TAAATAGAAG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:1309034 original size:39 final size:39
Alignment explanation
Indices: 1308923--1309055 Score: 121
Period size: 38 Copynumber: 3.4 Consensus size: 39
1308913 ATTTCTATAA
* * * *
1308923 AAAAAATATATGCATTAGTCACATATTTCGGATTGT-AAT
1 AAAAAATTTATGCATTAGTCACATCTTTTGAATT-TCAAT
* * * *
1308962 AAAAAATTCATGTATT-GTCACATCATCTGAATTTCAAT
1 AAAAAATTTATGCATTAGTCACATCTTTTGAATTTCAAT
* *
1309000 AAAAAATTTATACATTAGTCACATCTTTTAAATTTTC-A-
1 AAAAAATTTATGCATTAGTCACATCTTTTGAA-TTTCAAT
1309038 AAAAAATTTCATGCATTA
1 AAAAAATTT-ATGCATTA
1309056 ATCATATTTT
Statistics
Matches: 75, Mismatches: 15, Indels: 8
0.77 0.15 0.08
Matches are distributed among these distances:
37 1 0.01
38 37 0.49
39 33 0.44
40 4 0.05
ACGTcount: A:0.42, C:0.13, G:0.08, T:0.38
Consensus pattern (39 bp):
AAAAAATTTATGCATTAGTCACATCTTTTGAATTTCAAT
Found at i:1309068 original size:39 final size:40
Alignment explanation
Indices: 1308998--1309103 Score: 112
Period size: 39 Copynumber: 2.7 Consensus size: 40
1308988 CTGAATTTCA
* * *
1308998 ATAAAAAATTT-ATACATTAGTCACATCTTTTAAATT-TT
1 ATAAAAAATTTCATGCATTAATCATATCTTTTAAATTCTT
* *
1309036 CA-AAAAAATTTCATGCATTAATCATATTTTTTAGATTCTT
1 -ATAAAAAATTTCATGCATTAATCATATCTTTTAAATTCTT
* *
1309076 ATAAAAAA-ATCTTGCATTAATCATATCT
1 ATAAAAAATTTCATGCATTAATCATATCT
1309104 CTATAATAAA
Statistics
Matches: 56, Mismatches: 8, Indels: 6
0.80 0.11 0.09
Matches are distributed among these distances:
38 9 0.16
39 39 0.70
40 8 0.14
ACGTcount: A:0.42, C:0.12, G:0.04, T:0.42
Consensus pattern (40 bp):
ATAAAAAATTTCATGCATTAATCATATCTTTTAAATTCTT
Found at i:1310636 original size:20 final size:20
Alignment explanation
Indices: 1310613--1310676 Score: 59
Period size: 17 Copynumber: 3.5 Consensus size: 20
1310603 AAAATATAAT
1310613 TATTTTAATAAATAAATATA
1 TATTTTAATAAATAAATATA
* *
1310633 TATTATAATATAT-AA-A-A
1 TATTTTAATAAATAAATATA
*
1310650 TATTTTAA-AAATAATTAT-
1 TATTTTAATAAATAAATATA
1310668 TA-TTTAATA
1 TATTTTAATA
1310677 TAATTGAAAT
Statistics
Matches: 35, Mismatches: 5, Indels: 10
0.70 0.10 0.20
Matches are distributed among these distances:
16 3 0.09
17 14 0.40
18 5 0.14
19 2 0.06
20 11 0.31
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (20 bp):
TATTTTAATAAATAAATATA
Found at i:1310678 original size:32 final size:36
Alignment explanation
Indices: 1310596--1310679 Score: 97
Period size: 35 Copynumber: 2.4 Consensus size: 36
1310586 AGTTAAATTT
* *
1310596 TATATTAAAAATAT-AATTATTTTAATAAATAAATA
1 TATATTATAAATATAAAATATTTTAATAAATAAATA
*
1310631 TATATTATAATATATAAAATATTTTAA-AAATAATTA
1 TATATTATAA-ATATAAAATATTTTAATAAATAAATA
1310667 T-TATT-T-AATATAA
1 TATATTATAAATATAA
1310680 TTGAAATTAT
Statistics
Matches: 44, Mismatches: 3, Indels: 7
0.81 0.06 0.13
Matches are distributed among these distances:
32 6 0.14
33 1 0.02
34 1 0.02
35 13 0.30
36 13 0.30
37 10 0.23
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (36 bp):
TATATTATAAATATAAAATATTTTAATAAATAAATA
Found at i:1310883 original size:2 final size:2
Alignment explanation
Indices: 1310876--1310910 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
1310866 TGCATAAAAT
1310876 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1310911 CCGTAGGCAT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:1313796 original size:9 final size:10
Alignment explanation
Indices: 1313772--1313800 Score: 51
Period size: 9 Copynumber: 3.0 Consensus size: 10
1313762 ATAATTTTAA
1313772 ACTTAAAATG
1 ACTTAAAATG
1313782 ACTTAAAAT-
1 ACTTAAAATG
1313791 ACTTAAAATG
1 ACTTAAAATG
1313801 TCTCTAAAGC
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
9 9 0.50
10 9 0.50
ACGTcount: A:0.52, C:0.10, G:0.07, T:0.31
Consensus pattern (10 bp):
ACTTAAAATG
Found at i:1315101 original size:31 final size:29
Alignment explanation
Indices: 1315038--1315131 Score: 100
Period size: 31 Copynumber: 3.1 Consensus size: 29
1315028 AATTTAATTT
* * *
1315038 AATTGCAT-AATTTATATTGCAAGAGATA
1 AATTGCATAAATTAAAATTGCAAGAAATA
1315066 AATTGCATAAATTAAAAGTTGCAAGGAAATA
1 AATTGCATAAATTAAAA-TTGCAA-GAAATA
* *
1315097 AATTGCATAAATTAAAAATGACACGAAAATA
1 AATTGCATAAATTAAAATTG-CAAG-AAATA
1315128 AATT
1 AATT
1315132 AACTACATGA
Statistics
Matches: 56, Mismatches: 5, Indels: 7
0.82 0.07 0.10
Matches are distributed among these distances:
28 8 0.14
29 6 0.11
30 9 0.16
31 33 0.59
ACGTcount: A:0.51, C:0.07, G:0.13, T:0.29
Consensus pattern (29 bp):
AATTGCATAAATTAAAATTGCAAGAAATA
Found at i:1316368 original size:15 final size:15
Alignment explanation
Indices: 1316313--1316369 Score: 51
Period size: 15 Copynumber: 3.7 Consensus size: 15
1316303 TTTTAAAAAG
**
1316313 ATTAAAAGAAATTTTT
1 ATTAAAA-AAATTTCA
1316329 ATGTAAAAAAATTTCA
1 AT-TAAAAAAATTTCA
* *
1316345 ATTACAAAACTTTCA
1 ATTAAAAAAATTTCA
*
1316360 TTTAAAAAAA
1 ATTAAAAAAA
1316370 GTGATAAAAG
Statistics
Matches: 33, Mismatches: 7, Indels: 3
0.77 0.16 0.07
Matches are distributed among these distances:
15 18 0.55
16 10 0.30
17 5 0.15
ACGTcount: A:0.54, C:0.07, G:0.04, T:0.35
Consensus pattern (15 bp):
ATTAAAAAAATTTCA
Found at i:1317115 original size:27 final size:27
Alignment explanation
Indices: 1317054--1317115 Score: 79
Period size: 27 Copynumber: 2.3 Consensus size: 27
1317044 AAAGCCACCC
* * *
1317054 TTTGTATTTGTCAAAAATGGTGGTTAC
1 TTTGTATTTGTCAAAAATGATGGCTAA
*
1317081 TTTGTATTTGTCAAAATTGATGGCTAA
1 TTTGTATTTGTCAAAAATGATGGCTAA
*
1317108 TTTTTATT
1 TTTGTATT
1317116 ACAGAATGGG
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.26, C:0.06, G:0.18, T:0.50
Consensus pattern (27 bp):
TTTGTATTTGTCAAAAATGATGGCTAA
Found at i:1317177 original size:13 final size:13
Alignment explanation
Indices: 1317159--1317186 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
1317149 GGCTTCCTCC
1317159 TCCCTCTCAAGCA
1 TCCCTCTCAAGCA
1317172 TCCCTCTCAAGCA
1 TCCCTCTCAAGCA
1317185 TC
1 TC
1317187 ATTCTCTTGT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.21, C:0.46, G:0.07, T:0.25
Consensus pattern (13 bp):
TCCCTCTCAAGCA
Found at i:1319644 original size:19 final size:19
Alignment explanation
Indices: 1319620--1319687 Score: 85
Period size: 19 Copynumber: 3.9 Consensus size: 19
1319610 AATTCAACAA
1319620 TTTGTATCGATACATAAGT
1 TTTGTATCGATACATAAGT
1319639 TTTGTATCGATAC--AA--
1 TTTGTATCGATACATAAGT
1319654 --TGTATCGATACATAAGT
1 TTTGTATCGATACATAAGT
*
1319671 ATTGTATCGATACATAA
1 TTTGTATCGATACATAA
1319688 TTAGCTACTG
Statistics
Matches: 43, Mismatches: 0, Indels: 12
0.78 0.00 0.22
Matches are distributed among these distances:
13 11 0.26
15 2 0.05
17 2 0.05
19 28 0.65
ACGTcount: A:0.35, C:0.12, G:0.15, T:0.38
Consensus pattern (19 bp):
TTTGTATCGATACATAAGT
Found at i:1319659 original size:13 final size:13
Alignment explanation
Indices: 1319641--1319665 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1319631 ACATAAGTTT
1319641 TGTATCGATACAA
1 TGTATCGATACAA
1319654 TGTATCGATACA
1 TGTATCGATACA
1319666 TAAGTATTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:1319663 original size:32 final size:32
Alignment explanation
Indices: 1319622--1319684 Score: 117
Period size: 32 Copynumber: 2.0 Consensus size: 32
1319612 TTCAACAATT
*
1319622 TGTATCGATACATAAGTTTTGTATCGATACAA
1 TGTATCGATACATAAGTATTGTATCGATACAA
1319654 TGTATCGATACATAAGTATTGTATCGATACA
1 TGTATCGATACATAAGTATTGTATCGATACA
1319685 TAATTAGCTA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.35, C:0.13, G:0.16, T:0.37
Consensus pattern (32 bp):
TGTATCGATACATAAGTATTGTATCGATACAA
Found at i:1319750 original size:33 final size:33
Alignment explanation
Indices: 1319707--1319773 Score: 89
Period size: 33 Copynumber: 2.0 Consensus size: 33
1319697 GCCAAGGAAA
***
1319707 TGTATCGATACATTTTTCTATGTATCGATACAT
1 TGTATCGATACATGGATCTATGTATCGATACAT
* *
1319740 TGTATTGATACATGGATCTTTGTATCGATACAT
1 TGTATCGATACATGGATCTATGTATCGATACAT
1319773 T
1 T
1319774 TGGAAATTTT
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
33 29 1.00
ACGTcount: A:0.27, C:0.13, G:0.15, T:0.45
Consensus pattern (33 bp):
TGTATCGATACATGGATCTATGTATCGATACAT
Found at i:1322251 original size:27 final size:28
Alignment explanation
Indices: 1322221--1322296 Score: 109
Period size: 27 Copynumber: 2.8 Consensus size: 28
1322211 TTTCTTCACA
1322221 ATCGGGGATACTCCAACCCCGTTA-ATC
1 ATCGGGGATACTCCAACCCCGTTATATC
*
1322248 ATCGGGGATACTCCAACCCCGTTATTTC
1 ATCGGGGATACTCCAACCCCGTTATATC
***
1322276 CGAGGGGATACTCCAACCCCG
1 ATCGGGGATACTCCAACCCCG
1322297 ACTTTATTTC
Statistics
Matches: 44, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
27 24 0.55
28 20 0.45
ACGTcount: A:0.24, C:0.34, G:0.21, T:0.21
Consensus pattern (28 bp):
ATCGGGGATACTCCAACCCCGTTATATC
Found at i:1322397 original size:52 final size:51
Alignment explanation
Indices: 1322317--1322764 Score: 222
Period size: 52 Copynumber: 8.5 Consensus size: 51
1322307 CAAAATATTG
* * * *
1322317 ATTTTTCATAATCGGGGATACTCTAACCCTAGTTTTATTGATAAAACACTA
1 ATTTTTCACAATCGGGGATACTCCAACCCTAGTTTTATTCATAAAACACCA
* * **
1322368 ATTTTTCCACAATCGAGGATACTCCAACCCTGGTTTTATTTTTAAAACACCA
1 ATTTTT-CACAATCGGGGATACTCCAACCCTAGTTTTATTCATAAAACACCA
** * * *
1322420 ATTTTTCTTTAATCGGGGATACCCCAACTCCGA-TTTTATTTCCAAAAAACACCA
1 ATTTTTC-ACAATCGGGGATACTCCAAC-CCTAGTTTTA-TT-CATAAAACACCA
* * * *
1322474 ATTTCTTCACAATCGGGGATACTCCAACCC-CG-TTAATCATCGGGGATACTCCAAC-CCC
1 ATTT-TTCACAATCGGGGATACTCCAACCCTAGTTTTAT--TC----ATA---AAACACCA
* * * * * ***
1322532 GTTATTTC-CGAA---GGGATACTCCAACCC-CGACTTTATTTC-CAAAATATTG
1 ATT-TTTCAC-AATCGGGGATACTCCAACCCTAG-TTTTA-TTCATAAAACACCA
* * ** *
1322581 ATTTTTCATAATCGGGGATACTCCAGCCCCGGTTTTATTGC-TAAAACACTA
1 ATTTTTCACAATCGGGGATACTCCAACCCTAGTTTTATT-CATAAAACACCA
* *
1322632 ATTTTTCCACAATCGGGGATACTCCAACCCCAGTTTTATT-TTCAAAACACCA
1 ATTTTT-CACAATCGGGGATACTCCAACCCTAGTTTTATTCAT-AAAACACCA
* ** * *
1322684 ATTTTCCTTTAATCGGGGATACTCCAACTCC-AATTTTATTTCCA-AAAATACCA
1 ATTTTTC-ACAATCGGGGATACTCCAAC-CCTAGTTTTA-TT-CATAAAACACCA
*
1322737 ATTTTTCACAATCGAGGATACTCCAACC
1 ATTTTTCACAATCGGGGATACTCCAACC
1322765 TCGTTATTTC
Statistics
Matches: 306, Mismatches: 55, Indels: 72
0.71 0.13 0.17
Matches are distributed among these distances:
48 8 0.03
49 2 0.01
50 2 0.01
51 43 0.14
52 154 0.50
53 25 0.08
54 30 0.10
55 20 0.07
56 4 0.01
57 4 0.01
58 10 0.03
59 4 0.01
ACGTcount: A:0.30, C:0.26, G:0.12, T:0.32
Consensus pattern (51 bp):
ATTTTTCACAATCGGGGATACTCCAACCCTAGTTTTATTCATAAAACACCA
Found at i:1322515 original size:27 final size:25
Alignment explanation
Indices: 1322485--1322560 Score: 98
Period size: 27 Copynumber: 2.8 Consensus size: 25
1322475 TTTCTTCACA
1322485 ATCGGGGATACTCCAACCCCGTTAAT
1 ATCGGGGATACTCCAACCCCGTT-AT
1322511 CATCGGGGATACTCCAACCCCGTTAT
1 -ATCGGGGATACTCCAACCCCGTTAT
*
1322537 TTCCGAAGGGATACTCCAACCCCG
1 AT-CG--GGGATACTCCAACCCCG
1322561 ACTTTATTTC
Statistics
Matches: 45, Mismatches: 1, Indels: 5
0.88 0.02 0.10
Matches are distributed among these distances:
25 1 0.02
26 4 0.09
27 23 0.51
28 17 0.38
ACGTcount: A:0.25, C:0.34, G:0.20, T:0.21
Consensus pattern (25 bp):
ATCGGGGATACTCCAACCCCGTTAT
Found at i:1322618 original size:51 final size:51
Alignment explanation
Indices: 1322544--1322764 Score: 226
Period size: 52 Copynumber: 4.3 Consensus size: 51
1322534 TATTTCCGAA
* * * *** *
1322544 GGGATACTCCAACCCCGACTTTATTTCCAAAATATTGATTTTTCATAATCG
1 GGGATACTCCAACCCCAATTTTATTTCCAAAACACCAATTTTTCACAATCG
* ** * * *
1322595 GGGATACTCCAGCCCCGGTTTTATTGCTAAAACACTAATTTTTCCACAATCG
1 GGGATACTCCAACCCCAATTTTATTTCCAAAACACCAATTTTT-CACAATCG
* * * **
1322647 GGGATACTCCAACCCCAGTTTTATTTTCAAAACACCAATTTTCCTTTAATCG
1 GGGATACTCCAACCCCAATTTTATTTCCAAAACACCAATTTTTC-ACAATCG
* *
1322699 GGGATACTCCAACTCCAATTTTATTTCCAAAAATACCAATTTTTCACAATCG
1 GGGATACTCCAACCCCAATTTTATTTCC-AAAACACCAATTTTTCACAATCG
*
1322751 AGGATACTCCAACC
1 GGGATACTCCAACC
1322765 TCGTTATTTC
Statistics
Matches: 140, Mismatches: 27, Indels: 5
0.81 0.16 0.03
Matches are distributed among these distances:
51 36 0.26
52 90 0.64
53 14 0.10
ACGTcount: A:0.30, C:0.26, G:0.11, T:0.32
Consensus pattern (51 bp):
GGGATACTCCAACCCCAATTTTATTTCCAAAACACCAATTTTTCACAATCG
Found at i:1322635 original size:264 final size:264
Alignment explanation
Indices: 1322138--1322874 Score: 1178
Period size: 264 Copynumber: 2.8 Consensus size: 264
1322128 TCAACTCCGA
* * *
1322138 TTTTATTTTCAAAATACTAA-TTTTCTATAATCGGGGATACTCCAACTCCGATTTTATTTCCAAA
1 TTTTATTTTCAAAACACCAATTTTTCTTTAATCGGGGATACTCCAACTCCGATTTTATTTCCAAA
1322202 AAACACCAATTTCTTCACAATCGGGGATACTCCAACCCCGTTAATCATCGGGGATACTCCAACCC
66 AAACACCAATTTCTTCACAATCGGGGATACTCCAACCCCGTTAATCATCGGGGATACTCCAACCC
*
1322267 CGTTATTTCCGAGGGGATACTCCAACCCCGACTTTATTTCCAAAATATTGATTTTTCATAATCGG
131 CGTTATTTCCGAAGGGATACTCCAACCCCGACTTTATTTCCAAAATATTGATTTTTCATAATCGG
* **
1322332 GGATACTCTAACCCTAGTTTTATTGATAAAACACTAATTTTTCCACAATCGAGGATACTCCAACC
196 GGATACTCCAACCCCGGTTTTATTGATAAAACACTAATTTTTCCACAATCGAGGATACTCCAACC
**
1322397 CTGG
261 CCAG
* *
1322401 TTTTATTTTTAAAACACCAATTTTTCTTTAATCGGGGATACCCCAACTCCGATTTTATTTCCAAA
1 TTTTATTTTCAAAACACCAATTTTTCTTTAATCGGGGATACTCCAACTCCGATTTTATTTCCAAA
1322466 AAACACCAATTTCTTCACAATCGGGGATACTCCAACCCCGTTAATCATCGGGGATACTCCAACCC
66 AAACACCAATTTCTTCACAATCGGGGATACTCCAACCCCGTTAATCATCGGGGATACTCCAACCC
1322531 CGTTATTTCCGAAGGGATACTCCAACCCCGACTTTATTTCCAAAATATTGATTTTTCATAATCGG
131 CGTTATTTCCGAAGGGATACTCCAACCCCGACTTTATTTCCAAAATATTGATTTTTCATAATCGG
* * *
1322596 GGATACTCCAGCCCCGGTTTTATTGCTAAAACACTAATTTTTCCACAATCGGGGATACTCCAACC
196 GGATACTCCAACCCCGGTTTTATTGATAAAACACTAATTTTTCCACAATCGAGGATACTCCAACC
1322661 CCAG
261 CCAG
* *
1322665 TTTTATTTTCAAAACACCAATTTTCCTTTAATCGGGGATACTCCAACTCCAATTTTATTTCC-AA
1 TTTTATTTTCAAAACACCAATTTTTCTTTAATCGGGGATACTCCAACTCCGATTTTATTTCCAAA
* * * * * *
1322729 AAATACCAATTT-TTCACAATCGAGGATACTCCAACCTCGTTATTTCATCGGGGATACACTAACC
66 AAACACCAATTTCTTCACAATCGGGGATACTCCAACCCCGTTA-ATCATCGGGGATACTCCAACC
* * *
1322793 CCGTTACTTCCG-AGAGGATACTCCAACCCCGGCTTTA-TTCCTAAAATATTGATTTGTCATAAT
130 CCGTTATTTCCGAAG-GGATACTCCAACCCCGACTTTATTTCC-AAAATATTGATTTTTCATAAT
*
1322856 TGGGGATACTCCAACCCCG
193 CGGGGATACTCCAACCCCG
1322875 TTATTTTCGA
Statistics
Matches: 441, Mismatches: 29, Indels: 8
0.92 0.06 0.02
Matches are distributed among these distances:
262 34 0.08
263 117 0.27
264 290 0.66
ACGTcount: A:0.29, C:0.26, G:0.13, T:0.32
Consensus pattern (264 bp):
TTTTATTTTCAAAACACCAATTTTTCTTTAATCGGGGATACTCCAACTCCGATTTTATTTCCAAA
AAACACCAATTTCTTCACAATCGGGGATACTCCAACCCCGTTAATCATCGGGGATACTCCAACCC
CGTTATTTCCGAAGGGATACTCCAACCCCGACTTTATTTCCAAAATATTGATTTTTCATAATCGG
GGATACTCCAACCCCGGTTTTATTGATAAAACACTAATTTTTCCACAATCGAGGATACTCCAACC
CCAG
Found at i:1322783 original size:28 final size:28
Alignment explanation
Indices: 1322747--1322823 Score: 77
Period size: 28 Copynumber: 2.8 Consensus size: 28
1322737 ATTTTTCACA
* * *
1322747 ATCGAGGATACTCCAACCTCGTTATTTC
1 ATCGGGGATACTCCAACCCCGTTACTTC
* *
1322775 ATCGGGGATACACTAACCCCGTTACTTC
1 ATCGGGGATACTCCAACCCCGTTACTTC
1322803 --CGAGAGGATACTCCAACCCCG
1 ATCG-G-GGATACTCCAACCCCG
1322824 GCTTTATTCC
Statistics
Matches: 40, Mismatches: 7, Indels: 4
0.78 0.14 0.08
Matches are distributed among these distances:
26 2 0.05
27 1 0.03
28 37 0.93
ACGTcount: A:0.26, C:0.32, G:0.18, T:0.23
Consensus pattern (28 bp):
ATCGGGGATACTCCAACCCCGTTACTTC
Found at i:1322926 original size:79 final size:79
Alignment explanation
Indices: 1322777--1322981 Score: 216
Period size: 79 Copynumber: 2.6 Consensus size: 79
1322767 GTTATTTCAT
* * * * *
1322777 CGGGGATACACTAACCCCGTTACTTCCGAGAGGATACTCCAACCCCGGCTTTATTCCTAAAATAT
1 CGGGGATACTCCAACCCCGTTATTTTCGAGAGGATACTCCAATCCCGGCTTTATTCCTAAAATAT
* * * *
1322842 TGATTTGTCATAAT
66 CGATTTCTCACAAC
* ** * * *
1322856 TGGGGATACTCCAACCCCGTTATTTTCGAGAGGATACTCCAATCCCGATTTTTTTTTCT-AATTA
1 CGGGGATACTCCAACCCCGTTATTTTCGAGAGGATACTCCAATCCCG-GCTTTATTCCTAAAATA
1322920 TCGATTTCTCACAAC
65 TCGATTTCTCACAAC
* * *
1322935 CGGGGATACTCCAGCCCCGTTATTTTCAAG-GGAACACTCCAATCCCG
1 CGGGGATACTCCAACCCCGTTATTTTCGAGAGG-ATACTCCAATCCCG
1322982 TTATTATCTC
Statistics
Matches: 105, Mismatches: 19, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
78 2 0.02
79 96 0.91
80 7 0.07
ACGTcount: A:0.25, C:0.28, G:0.17, T:0.30
Consensus pattern (79 bp):
CGGGGATACTCCAACCCCGTTATTTTCGAGAGGATACTCCAATCCCGGCTTTATTCCTAAAATAT
CGATTTCTCACAAC
Found at i:1326243 original size:27 final size:27
Alignment explanation
Indices: 1326182--1326243 Score: 70
Period size: 27 Copynumber: 2.3 Consensus size: 27
1326172 AAAGTCACCC
* * * *
1326182 TTTGTGTTTCTCAAAAATGGTGGTTAC
1 TTTGTATTTATCAAAAATGGTGGCTAA
*
1326209 TTTGTATTTATCAAAATTGGTGGCTAA
1 TTTGTATTTATCAAAAATGGTGGCTAA
*
1326236 TTTTTATT
1 TTTGTATT
1326244 GCAAAATGGG
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.24, C:0.08, G:0.18, T:0.50
Consensus pattern (27 bp):
TTTGTATTTATCAAAAATGGTGGCTAA
Found at i:1332054 original size:115 final size:115
Alignment explanation
Indices: 1331841--1332066 Score: 264
Period size: 115 Copynumber: 2.0 Consensus size: 115
1331831 ATGAAAAAAG
* * *
1331841 AGAATAGGAAAGAAAGATAGACGGATGGAGCCCTCTCTCTTATGTGAACTATATTAAATAAAAAA
1 AGAATAAGAAAGAAAGATAGACGGATGAAGCCCTCTCTCTTATGTGAACCATATTAAATAAAAAA
1331906 AAAGATAGAATGAAATGACGAAGGAGAATAAAAAAGAAAGATGGATGGGCT
66 AAAGATAGAATGAAATGAC-AAGGAGAATAAAAAAGAAAGATGGATGGGCT
* * * * *
1331957 AGAATAAGAAAGAAAGAT-GAATGG-TGAAGCCTTTTCTCTTATGTGAACCATATTAAGT-GAAA
1 AGAATAAGAAAGAAAGATAG-ACGGATGAAGCCCTCTCTCTTATGTGAACCATATTAAATAAAAA
* * * * *
1332019 CAAAGATAGGATGAAAT-A-ATGGAGAATAGGAAAAAAAAATATGGATGG
65 AAAAGATAGAATGAAATGACAAGGAGAATA--AAAAAGAAAGATGGATGG
1332067 ATGGAGCCAT
Statistics
Matches: 94, Mismatches: 13, Indels: 9
0.81 0.11 0.08
Matches are distributed among these distances:
111 9 0.10
113 17 0.18
114 18 0.19
115 30 0.32
116 20 0.21
ACGTcount: A:0.48, C:0.08, G:0.24, T:0.21
Consensus pattern (115 bp):
AGAATAAGAAAGAAAGATAGACGGATGAAGCCCTCTCTCTTATGTGAACCATATTAAATAAAAAA
AAAGATAGAATGAAATGACAAGGAGAATAAAAAAGAAAGATGGATGGGCT
Found at i:1332181 original size:88 final size:86
Alignment explanation
Indices: 1331957--1342779 Score: 7176
Period size: 88 Copynumber: 124.5 Consensus size: 86
1331947 TGGATGGGCT
* * * * * * *
1331957 AGAATAAGAAAGAAAGATGAAT-GGTGAAGCCTTTTCTCTTATGTGAACCATATTAAGTGAAACA
1 AGAATAGGAAAGAAAGATGGATGGGTGGAGCCCTCTCACTTATGTGAACCATATTAAGT-AAAAA
* * * *
1332021 AAGATAGGATGAAATAATG--G
65 AAAAAAGGATGAAATGACGAAG
* * * * * *
1332041 AGAATAGGAAAAAAAAATATGGATGGATGGAGCCATCTCTCTTATGTAAACCATATTAAGTAAAA
1 AGAATAGG--AAAGAAAGATGGATGGGTGGAGCCCTCTCACTTATGTGAACCATATTAAGTAAAA
*
1332106 AAAAAAAGGATGAAATGACAAAGG
64 AAAAAAAGGATGAAATGACGAA-G
* * * * * *
1332130 AGAATAGGAAAAAAAAGATAGATGGGTGGAGCTCTCTCACATGTGTGAACCATATTAAATAAAAA
1 AGAATAGG-AAAGAAAGATGGATGGGTGGAGCCCTCTCACTTATGTGAACCATATTAAGT-AAAA
1332195 AAAAAGACAGGATGAAATGACGGAAG
64 AAAAA-A-AGGATGAAATGAC-GAAG
* * * * * * * *
1332221 AGAATAAGAAAGAAAGA--GATAGGTGGAGCTCTCTCAATTATATGAACTATAATTAAGCAAAAG
1 AGAATAGGAAAGAAAGATGGATGGGTGGAGCCCTCTCACTTATGTGAACCAT-ATTAAGTAAAAA
* *
1332284 AAAATAGGATGAAATGACGGAG
65 AAAAAAGGATGAAATGACGAAG
* * * * *
1332306 AAAAATAGG-AA-AAA-ATGGATGGGTAGAGCCCAT-TCTCTTATGGGAATCATATTAAGTAAAA
1 -AGAATAGGAAAGAAAGATGGATGGGTGGAGCCC-TCTCACTTATGTGAACCATATTAAGT-AAA
* * *
1332367 TAAAAAATATAAGATTAAATGACAGAGG
63 -AAAAAA-A-AGGATGAAATGAC-GAAG
* * * * * *
1332395 AGAATAAGAAAGAAAGAT-GATGGATGGAGCCCTTTCTCTTATATGAACCATATTAAATGAAAAA
1 AGAATAGGAAAGAAAGATGGATGGGTGGAGCCCTCTCACTTATGTGAACCATATTAAGT-AAAAA
* * *
1332459 AAGATAGGATGAAATGATGAA-
65 AAAAAAGGATGAAATGACGAAG
* * *
1332480 AG---A-G-AA-TAAGATGGATGGGTGGAGCCCTCTCATTTATGTGAACCATATTAAATAAAAAA
1 AGAATAGGAAAGAAAGATGGATGGGTGGAGCCCTCTCACTTATGTGAACCATATTAAGT-AAAAA
* *
1332539 AAAAGACATGATGAAATGACAGAAC
65 AAAA-A-AGGATGAAATGAC-GAAG
* * * ** * *
1332564 AGAATAGAAAAGAAATAT-AATAAGTGGAGCCATCTCACTTTTGTGAACCATATTAAGTTAAAAA
1 AGAATAGGAAAGAAAGATGGATGGGTGGAGCCCTCTCACTTATGTGAACCATATTAAG-TAAAAA
* *
1332628 AATAAA--ATAAAATGACGAAG
65 AAAAAAGGATGAAATGACGAAG
* * * * *
1332648 AAACATAGG-AA-AAA-ATGGATGGGTAGAGCCCAT-TCTCTTATGGGAATCATATTAAGTAAAA
1 AGA-ATAGGAAAGAAAGATGGATGGGTGGAGCCC-TCTCACTTATGTGAACCATATTAAGT-AAA
* * *
1332709 TAAAAAATATAAGATTAAATGACAGAGG
63 -AAAAAA-A-AGGATGAAATGAC-GAAG
* * * ** * *
1332737 AGAATAAGAAAGAAAGATGGATGGATGGAGCCCTTTTTCTTATATGAACCATATTAAATGAAAAA
1 AGAATAGGAAAGAAAGATGGATGGGTGGAGCCCTCTCACTTATGTGAACCATATTAAGT-AAAAA
* * *
1332802 AACATAGGATGAAATGATGAA-
65 AAAAAAGGATGAAATGACGAAG
* * *
1332823 AG--T--G-AA-TAAGATGGATGGGTGGAGCCCTCTCATTTATGTGAACCATATTAAATAAAAAA
1 AGAATAGGAAAGAAAGATGGATGGGTGGAGCCCTCTCACTTATGTGAACCATATTAAGTAAAAAA
* *
1332882 AAGACATGATGAAATGACAGAAG
66 AA-AAAGGATGAAATGAC-GAAG
* * * ** * *
1332905 AGAATAGAAAAGAAATAT-AATAAGTGGAGCCATCTCACTTTTGTGAACCATATTAAGTTAAAAA
1 AGAATAGGAAAGAAAGATGGATGGGTGGAGCCCTCTCACTTATGTGAACCATATTAAG-TAAAAA
* *
1332969 AATAAA--ATAAAATGACGAAG
65 AAAAAAGGATGAAATGACGAAG
* * * **
1332989 AAACATAGGAAAGAAAGATGGATGAGTGGAGCTCTCTCTTTTATGTGAACCATATTAAGTAAAAA
1 AGA-ATAGGAAAGAAAGATGGATGGGTGGAGCCCTCTCACTTATGTGAACCATATTAAGTAAAAA
*
1333054 AAAAGATAGGATGAAATGACGGAG
65 AAAA-A-AGGATGAAATGACGAAG
** * * * *
1333078 TAGAATATAAAAGAAAGATAGATGGGTGGAGCCCTCTCTCTTAAGTAAACCATATTAAGTAAAAA
1 -AGAATAGGAAAGAAAGATGGATGGGTGGAGCCCTCTCACTTATGTGAACCATATTAAGTAAAAA
1333143 AAAAAAGATAGAATGAAATGACGAAGG
65 AAAAAAG---G-ATGAAATGACGAA-G
* * * * * *
1333170 AAAATAGGAAA-AAAAAAGGATGGGTGGAGCTCTCTCACTTATGTGAACCATAGTAAATAAAAAA
1 AGAATAGGAAAGAAAGATGGATGGGTGGAGCCCTCTCACTTATGTGAACCATATTAAGT--AAAA
1333234 AAAAAGATAGGATGAAATGACGGAAG
64 AAAAA-A-AGGATGAAATGAC-GAAG
* * * * * *
1333260 AGAATAAGAAAGAAAGATAGATGGGTGGAGCTCTCTTA-TCTATGTAAACTATATTAAGTAAAAA
1 AGAATAGGAAAGAAAGATGGATGGGTGGAGCCCTCTCACT-TATGTGAACCATATTAAGTAAAAA
*
1333324 AAGAAGATAGGATGAAATGATTG-AG
65 AA-AA-A-AGGATGAAATGA-CGAAG
* * *
1333349 AAAAATAGGAAAGAAAGATGGATGGGTGGAGCCCTTTCTCTTATGTGAACCATATTAAGTAAAAT
1 -AGAATAGGAAAGAAAGATGGATGGGTGGAGCCCTCTCACTTATGTGAACCATATTAAGT--AA-
* *
1333414 AAAAAAATATAGGATGAAATGATAGAGG
62 AAAAAAA-A-AGGATGAAATGA-CGAAG
* * * * *
1333442 AGAATAAGAAAGAAAGATGGATGGATGGAGCCCTTTCTCTTATGTGAACCATATTAAATGAAAAA
1 AGAATAGGAAAGAAAGATGGATGGGTGGAGCCCTCTCACTTATGTGAACCATATTAAGT-AAAAA
* * *
1333507 AAAGATAGGGTGAAATGATG--G
65 AAA-AAAGGATGAAATGACGAAG
* * ** * * *
1333528 AG----GTAAA-TAAGATGGATATGTCGAGCCCTCTCATTTATGTGAACCATATTAAATAAAAAA
1 AGAATAGGAAAGAAAGATGGATGGGTGGAGCCCTCTCACTTATGTGAACCATATTAAGTAAAAAA
*
1333588 AAGACAA-GATTAAATGACGGAAG
66 AA-A-AAGGATGAAATGAC-GAAG
* * * *
1333611 AGAATAGGAAAGAAAGATGGATAGGAGGAGCCATCTCACTTTTGTGAACCATATTAAGT---AAA
1 AGAATAGGAAAGAAAGATGGATGGGTGGAGCCCTCTCACTTATGTGAACCATATTAAGTAAAAAA
* *
1333673 AAAAA-GATAAAATTACGAAG
66 AAAAAGGATGAAATGACGAAG
* * * * * *
1333693 AAACATAAGAAAAAAAGATGGATGAGTGGAGCCCTCTCTCTTATGTGAACCATATTAGGTAAAAA
1 AGA-ATAGGAAAGAAAGATGGATGGGTGGAGCCCTCTCACTTATGTGAACCATATTAAGTAAAAA
* * *
1333758 AAAGATAGGACGAAATGACGGAG
65 AAA-AAAGGATGAAATGACGAAG
* * * * *
1333781 CTGAATAGGAAAGAAAGACGGATGGGTAGAGCCCTCTCTCTTAT-TGAAACCATATCAAGTAAAA
1 -AGAATAGGAAAGAAAGATGGATGGGTGGAGCCCTCTCACTTATGTG-AACCATATTAAGTAAAA
* *
1333845 AAAAGATATGATGAAATGACGAAGG
64 AAAA-AAAGGATGAAATGACGAA-G
* ** * *
1333870 AGAATAGGAAAAAAAGATGGATGGGTGGAGCTGTCTCACTTATTTGAACCATATTAAATAAGAAA
1 AGAATAGGAAAGAAAGATGGATGGGTGGAGCCCTCTCACTTATGTGAACCATATTAAGTAA-AAA
* *
1333935 AAGACAGGATGAAATGACGGAAG
65 AAAAAAGGATGAAATGAC-GAAG
* * * *
1333958 AGAATAGGAAAGAAAGATAGAAGGGTGGAGCTCTCTCATTTATGTG-ACCAATATTAAGTAAAAA
1 AGAATAGGAAAGAAAGATGGATGGGTGGAGCCCTCTCACTTATGTGAACC-ATATTAAGTAAAAA
* * *
1334022 AAGGATAGGATGAAATGACGGAG
65 AA-AAAAGGATGAAATGACGAAG
* * * * ** * ** * *
1334045 AAAAATAGGAATGAAAAATGGATGGGTAGAG-CCT-T---TTAAAATAAAAAATA-TAGGATGAA
1 -AGAATAGGAAAGAAAGATGGATGGGTGGAGCCCTCTCACTT-ATGTGAACCATATTAAG-TAAA
** * * *
1334104 ATGACAGAGGA-G-AAT-AAGAA-
63 AAAAAAAAGGATGAAATGACGAAG
* * * * * *
1334124 AG-A-A--A------GATGGATGGATGAAGCCTTTTCTCTTATGTGAACCATATTAAATGAAAAA
1 AGAATAGGAAAGAAAGATGGATGGGTGGAGCCCTCTCACTTATGTGAACCATATTAAGT-AAAAA
* * * *
1334179 GAGATAGGATGAAATGATG--G
65 AAAAAAGGATGAAATGACGAAG
* * * * *
1334199 AG--GA-G-AA-TAAGATGGATGGGTGAAGCCCTCTCATTTATGTGAACCATATTAAATAAAAAA
1 AGAATAGGAAAGAAAGATGGATGGGTGGAGCCCTCTCACTTATGTGAACCATATTAAGTAAAAAA
* * *
1334259 GACAA-GATAAAATGACGAAAG
66 AAAAAGGATGAAATGACG-AAG
* * *
1334280 AGAATAGGAAAGAAAGATGGATAGGTGGAGCCCTCTCACTTTTGAGAACCATATTAAGTAACAAA
1 AGAATAGGAAAGAAAGATGGATGGGTGGAGCCCTCTCACTTATGTGAACCATATTAAGTAA-AAA
* *
1334345 AGAAAAA--AT--TATGAAGAA-
65 A-AAAAAGGATGAAATGACGAAG
* * * *
1334363 ACG--TACGAAAGAAAGATGGATGAGTGGAGCCCTCTCTCTTTTGTGAACCATATTAAGTAAAAA
1 A-GAATAGGAAAGAAAGATGGATGGGTGGAGCCCTCTCACTTATGTGAACCATATTAAGTAAAAA
**
1334426 AAAAGATAGGATGAAATGACAGATC
65 AAAA-A-AGGATGAAATGAC-GAAG
* * *
1334451 AGAATATGAGAA-AAAGATGGATGGGTGGAGCCCTCTCTCTTATGTAAACCATATTAAGTAAAAA
1 AGAATAGGA-AAGAAAGATGGATGGGTGGAGCCCTCTCACTTATGTGAACCATATTAAGTAAAAA
1334515 AAAGATAA-GATGAAATGACGAAGG
65 AAA-A-AAGGATGAAATGACGAA-G
* *
1334539 AGAATA-GAAAAAAAGATGGATGGGTGGAG--CTCT--C-T-TGTGAACCATATTAAATAAAGAA
1 AGAATAGGAAAGAAAGATGGATGGGTGGAGCCCTCTCACTTATGTGAACCATATTAAGTAAA-AA
*
1334597 AAAGAGAGGATGAAATGACGGAAG
65 AAA-AAAGGATGAAATGAC-GAAG
* * * * * * *
1334621 AGAATAGGAAA-AAAGATAGATAGGTAGAGCTCTCTCATTTATGCGAACTATATTAAGT---AAA
1 AGAATAGGAAAGAAAGATGGATGGGTGGAGCCCTCTCACTTATGTGAACCATATTAAGTAAAAAA
1334682 AAAAA-GATGAAATGAC-AGAG
66 AAAAAGGATGAAATGACGA-AG
* * * * * *
1334702 AAAAATTGGAATGAAAGATGGATGGGTGGAGCCCTTTCTCTTATGTGAACTATATTAAGTAAAAT
1 -AGAATAGGAAAGAAAGATGGATGGGTGGAGCCCTCTCACTTATGTGAACCATATTAAGT-AAA-
* *
1334767 AAAAAATATAGGATGAAATGATAGAGG
63 AAAAAA-A-AGGATGAAATGA-CGAAG
* * * * * *
1334794 CGAATAAGAAAGAAAGATGGATGGATGGAGCCCTTTCTCTTATGTGAACCATATTAAATGAAAAA
1 AGAATAGGAAAGAAAGATGGATGGGTGGAGCCCTCTCACTTATGTGAACCATATTAAGT-AAAAA
* * * *
1334859 AAGATAGGATGAAGTGATG--G
65 AAAAAAGGATGAAATGACGAAG
* * * * * *
1334879 AG--GA-G-AA-TAAGATGGATGGGTGGAGCCCTCTAATTTATGTGAATCATATTAAATAAAAAA
1 AGAATAGGAAAGAAAGATGGATGGGTGGAGCCCTCTCACTTATGTGAACCATATTAAGTAAAAAA
*
1334939 AAGACAA-GATAAAATGACGAAAG
66 AA-A-AAGGATGAAATGACG-AAG
* * * * * *
1334962 AGAATAGGAAAGAAAAATGGATAGGTGGAGCCATCTCACTTTTGCGAACCATATTAAGTTAAAAA
1 AGAATAGGAAAGAAAGATGGATGGGTGGAGCCCTCTCACTTATGTGAACCATATTAAGTAAAAAA
* * *
1335027 ATAAA--ATAAAATGACGAAA
66 AAAAAGGATGAAATGACGAAG
* * * * **
1335046 AAACATAAGAAAGAAAGATGGATGAGTGGAGCCCTCGCTTTTATGTGAACCATATTAAGTGAAAA
1 AGA-ATAGGAAAGAAAGATGGATGGGTGGAGCCCTCTCACTTATGTGAACCATATTAAGT--AAA
1335111 AAAAAAGATAGGATGAAATGAC-AGAG
63 AAAAAA-A-AGGATGAAATGACGA-AG
* * * * * * *
1335137 CAGAATAAGAAAGAAAAATAGATGGGTGGAGCCCTCTCTCTTACGTAAACCATATTAAGCAAAAA
1 -AGAATAGGAAAGAAAGATGGATGGGTGGAGCCCTCTCACTTATGTGAACCATATTAAGTAAAAA
*
1335202 CAAAAGATATGATGAAATGACGAAGG
65 -AAAA-A-AGGATGAAATGACGAA-G
* * * * * ** * *
1335228 AAAATAGTAAAAAAAATATGGATGAGTGGAGCTTTGTCACTTATGTGAACCATATTAAATAAAAA
1 AGAATAG-GAAAGAAAGATGGATGGGTGGAGCCCTCTCACTTATGTGAACCATATTAAGTAAAAA
1335293 AAAAAGGCAGGATGAAATGACGGAAG
65 AAAAA---AGGATGAAATGAC-GAAG
* * * ** * *
1335319 AGAATAAGAAAGAAAGATAGATAGGTGGAGCTTTC-CTATTTATGTGAACTATATTAAGTAAAAA
1 AGAATAGGAAAGAAAGATGGATGGGTGGAGCCCTCTC-ACTTATGTGAACCATATTAAGT--AAA
*
1335383 AAAAAGAGATAGGATGAAATGACTAAG
63 AAAAA-A-A-AGGATGAAATGACGAAG
* * *
1335410 AAAAATAGGAAAGAAAGATGGATGGGTGGAGCCCTTTCTCTTATGTGAACCATATTAAGTAAAAC
1 -AGAATAGGAAAGAAAGATGGATGGGTGGAGCCCTCTCACTTATGTGAACCATATTAAGT-AAA-
1335475 AAAAAATATAGGATGAAATGA-GAAAGG
63 AAAAAA-A-AGGATGAAATGACG-AA-G
* * * * * *
1335502 AGAATAAGAAAGAAAGATGAATGGATGGAGCCCTTTCTCTTATGTGAACCATATTAAATGAAAAA
1 AGAATAGGAAAGAAAGATGGATGGGTGGAGCCCTCTCACTTATGTGAACCATATTAAGT-AAAAA
* * *
1335567 AAGATAGGATGAAATGATG--G
65 AAAAAAGGATGAAATGACGAAG
* * * * * *
1335587 AG--GA-G-AA-TAAGATGGATGGGTGGAGCCCACTCATTTATGTGAATCATATTAAATTAAAAA
1 AGAATAGGAAAGAAAGATGGATGGGTGGAGCCCTCTCACTTATGTGAACCATATT-AAGTAAAAA
* * *
1335647 AAGACATGATGAAATGACGGAAG
65 AAAAAAGGATGAAATGAC-GAAG
* ** * * *
1335670 AGAATAGAAAAGAAAGATGGACAGGTGGAGCCATCTCACTTTTGTGAACCATATTAAGTTAAAAA
1 AGAATAGGAAAGAAAGATGGATGGGTGGAGCCCTCTCACTTATGTGAACCATATTAAGTAAAAAA
* * *
1335735 ATAAA--ATAAAATGACGAAA
66 AAAAAGGATGAAATGACGAAG
* * * *
1335754 AAACATAGGAAAGAAAGATGGATGAGTGAAGCCCTCTCTCTTATGTGAACCATATTAAGTAAAAA
1 AGA-ATAGGAAAGAAAGATGGATGGGTGGAGCCCTCTCACTTATGTGAACCATATTAAGTAAAAA
1335819 AAAAGATAGGATGAAATGAC-AGAG
65 AAAA-A-AGGATGAAATGACGA-AG
* ** * * *
1335843 CAGAATAGGAAAGAAAGATAGATGGGTGGAGCCCTCTTTCTTACGTAAACCATATTAAGCAAAAA
1 -AGAATAGGAAAGAAAGATGGATGGGTGGAGCCCTCTCACTTATGTGAACCATATTAAG-TAAAA
*
1335908 AAATAAGATAAGATGAAATGACGAAGG
64 AAA-AA-A-AGGATGAAATGACGAA-G
* * * ** *
1335935 AAAATAGTAAAAAAAAGATGGATGGGTGGAGCTTTCTCACTTATGTGAACCATATTAAATAAAAA
1 AGAATAG-GAAAGAAAGATGGATGGGTGGAGCCCTCTCACTTATGTGAACCATATTAAGTAAAAA
*
1336000 AAAGACAGGATGAAATGACGGAAG
65 AAA-AAAGGATGAAATGAC-GAAG
* * ** * * *
1336024 AGAATAAGAAAGAAAGATAGATGGGTGGAGCTTTCTTATTTATGTGAACTATATTAAGTAAAAAA
1 AGAATAGGAAAGAAAGATGGATGGGTGGAGCCCTCTCACTTATGTGAACCATATTAAGT---AAA
1336089 AAAAAAGATAGGATGAAATGACTG-AG
63 AAAAAA-A-AGGATGAAATGAC-GAAG
* * * * *
1336115 AAAAATAGGAAAGAAAAATGGATGGGTGGAGACCTTTCCCTTATGTGAACCATATTAAGTAAAAT
1 -AGAATAGGAAAGAAAGATGGATGGGTGGAGCCCTCTCACTTATGTGAACCATATTAAGT-AAA-
** * *
1336180 AAAAAATATAAAATGAAATGATTGAGG
63 AAAAAA-A-AGGATGAAATGA-CGAAG
* * * * ** * ** * **
1336207 AGAATAAGAAAGAAAGATAGATGGATGGAG-CC-AT-A-TTAAATGAA--AGAAAAAG-ATAGGA
1 AGAATAGGAAAGAAAGATGGATGGGTGGAGCCCTCTCACTTATGTGAACCATATTAAGTAAAAAA
** * * **
1336265 TGAAATGATTGAGGAT-AATAAG
66 AAAAAGGA-TGA-AATGACGAAG
* ** **** ** * * *
1336287 ATGGATAGGTGGAGCCCTCTCATTTAT--GTGAAG-----T-A--TAT-T-AAACA-A--AA-AA
1 A-GAATAGG-AAAG---AAAGATGGATGGGTGGAGCCCTCTCACTTATGTGAACCATATTAAGTA
*
1336336 AAAGACAAGATAAA--AT--AACGA--AAG
61 AAA-A-AA-A-AAAGGATGAAATGACGAAG
* * * *
1336360 AGAATAGGAAAGAAAGATGGATAGGTGGAGCCCCCTCACTTTTGTGAACCATATTAAGT----AC
1 AGAATAGGAAAGAAAGATGGATGGGTGGAGCCCTCTCACTTATGTGAACCATATTAAGTAAAAAA
* * *
1336421 AAAAA-GATAAAATTACAAAG
66 AAAAAGGATGAAATGACGAAG
* * * * *
1336441 AAACATAGGAAAGAAAGATAGATGAGTGGAGCCCTCTCTCTTATGTCAACCATATTAAGTAAAAA
1 AGA-ATAGGAAAGAAAGATGGATGGGTGGAGCCCTCTCACTTATGTGAACCATATTAAGT-AAAA
* * *
1336506 AAAAAGATAGGATGAAATAATGGAG
64 AAAAA-A-AGGATGAAATGACGAAG
* * * * *
1336531 CAGAATATGAAAAAAAGATGGATGGGTGGAGCACTCTCTCTTATGTAAACCATATTAAGTAAAAA
1 -AGAATAGGAAAGAAAGATGGATGGGTGGAGCCCTCTCACTTATGTGAACCATATTAAGT--AAA
*
1336596 AAAAAAATAGGATGAAATGACAAAGG
63 AAAAAAA-AGGATGAAATGACGAA-G
* *
1336622 AGAATAGGGAAA-AAAGATGGATGGGTGAAG--CTCT-A--T-TGTGAACCATATTAA--ATAAA
1 AGAATA-GGAAAGAAAGATGGATGGGTGGAGCCCTCTCACTTATGTGAACCATATTAAGTAAAAA
* *
1336678 AAAACATGATGAAATGACGAATG
65 AAAAAAGGATGAAATGACGAA-G
* * * * * * * *
1336701 AGAATAGGAAAAAAAGATAGATAGGTGGAACTCTTTCATTTATGTGAACTATATTAAGT--AAAA
1 AGAATAGGAAAGAAAGATGGATGGGTGGAGCCCTCTCACTTATGTGAACCATATTAAGTAAAAAA
*
1336764 AAAAA-GATGAAATGACGGAG
66 AAAAAGGATGAAATGACGAAG
* * * * * *
1336784 A-AAAATCGAATGAAAGATGGATAGGTGGAGCCCTTTCTCTTATGTGAACCATATTAAGTGAAAG
1 AGAATA-GGAAAGAAAGATGGATGGGTGGAGCCCTCTCACTTATGTGAACCATATTAAGT--AA-
*
1336848 AAAAAAATATAGGATGAAATGACAAAGG
62 AAAAAAA-A-AGGATGAAATGACGAA-G
* * * * * *
1336876 AGAATAAGAAAGAAAGATGGATGGATGGAGCCCTTTCTCTTATGTGAACCATATTAAATGAAAAA
1 AGAATAGGAAAGAAAGATGGATGGGTGGAGCCCTCTCACTTATGTGAACCATATTAAGTAAAAAA
* * * *
1336941 AGATATGATGAAATGA--TAG
66 AAAAAGGATGAAATGACGAAG
* * * *
1336960 -G----GGAGAA-TAAGATGGATGGGTGGAGTCCTCTCATTTATGAGAACCATATTGAA-TAGAA
1 AGAATAGGA-AAGAAAGATGGATGGGTGGAGCCCTCTCACTTATGTGAACCATATT-AAGTA-AA
* *
1337018 AAAAAGACATGATGAAATGACGGAAG
63 AAAAA-AAAGGATGAAATGAC-GAAG
* * * ** * *
1337044 AAAATAGGAAAGAAAGATGGATAGGTAGAGCTATCTCACTTTTGTGAACCATCTTAAGTTAAAAA
1 AGAATAGGAAAGAAAGATGGATGGGTGGAGCCCTCTCACTTATGTGAACCATATTAAG-TAAAAA
* * * *
1337109 AATAAA--ATAAAATGACAAAT
65 AAAAAAGGATGAAATGACGAAG
* * * **
1337129 AAACATAGGAAAGAAAGATGGATGAGTGGAGTCCTCTGTCTTATGTGAACCATATTAAGTAAAAA
1 AGA-ATAGGAAAGAAAGATGGATGGGTGGAGCCCTCTCACTTATGTGAACCATATTAAGT--AAA
*
1337194 AAAAAAGATAGGATGAAATGACGGAG
63 AAAAAA-A-AGGATGAAATGACGAAG
* * * * * *
1337220 CAAAATAGG-AAGAAAGATAGATAGGTGGAGCCCTTTCTCTTATGTAAACCATA-TAATGTAAAA
1 -AGAATAGGAAAGAAAGATGGATGGGTGGAGCCCTCTCACTTATGTGAACCATATTAA-GT-AAA
1337283 AAAAAAGATAGGATGAAATGACGAAGG
63 AAAAAA-A-AGGATGAAATGACGAA-G
* * * *
1337310 AGAATAGAAAGAAAAAAAGATGGATGGGCGGAGCTCTCTCACTTATGTGAACCATATTAAATAAA
1 AGAATAG---GAAAGAAAGATGGATGGGTGGAGCCCTCTCACTTATGTGAACCATATTAAGTAAA
*
1337375 AAAAAGACAGGATGAAATGACGGAAG
63 AAAAA-AAAGGATGAAATGAC-GAAG
* * * * * * * *
1337401 AGAATAAGAAAGGAAGATAGATAGGTGGAGCTCTCTTATTTATGTGAACTATATTAAGTAAAAAA
1 AGAATAGGAAAGAAAGATGGATGGGTGGAGCCCTCTCACTTATGTGAACCATATTAAGTAAAAAA
*
1337466 AAGATAGGATGAAATGACTG-AG
66 AA-AAAGGATGAAATGAC-GAAG
* * * * * * *
1337488 AAAAATAAGAAAGAAAGATTGATGGGTGGAGACCTTTCTCTTATGTGAACCGTATTAAGTAAAAT
1 -AGAATAGGAAAGAAAGATGGATGGGTGGAGCCCTCTCACTTATGTGAACCATATTAAGT-AAA-
1337553 AAAAATAAAGGATGAAATGACAGAAG
63 AAAAA-AAAGGATGAAATGAC-GAAG
* * * *
1337579 AGAATAAGAAAGAAAGATGGATGGATGGAGCCCTTTCTCTTATGTGAACCATATT-AGATGAAAA
1 AGAATAGGAAAGAAAGATGGATGGGTGGAGCCCTCTCACTTATGTGAACCATATTAAG-T-AAAA
* * *
1337643 AAAGGATAGGATGAAATGATG--G
64 AAA-AAAAGGATGAAATGACGAAG
* * * * *
1337665 AG--GA-G-AA-TAAGATGGATGGGTGGAGCCCTCTCATTTATGCGAACCATATTAAATAAAAAA
1 AGAATAGGAAAGAAAGATGGATGGGTGGAGCCCTCTCACTTATGTGAACCATATTAAGTAAAAAA
*
1337725 AAGACAGGATGAAATGACAGAAG
66 AA-AAAGGATGAAATGAC-GAAG
**** * * *
1337748 AGAATAGGAAAGAAAGATGGATAAAAGGAGCCCTCTCACTTCTGTAAACCATATTTAGT--AAAA
1 AGAATAGGAAAGAAAGATGGATGGGTGGAGCCCTCTCACTTATGTGAACCATATTAAGTAAAAAA
* *
1337811 AAAAA-GATAAAATTACGAA-
66 AAAAAGGATGAAATGACGAAG
* * ** *
1337830 AAAACGTAGGAAAGAAAGATGGATGAGTGGAGCCCTCTCTTTTATGTGAACTATATTAAGTAAAA
1 AGAA--TAGGAAAGAAAGATGGATGGGTGGAGCCCTCTCACTTATGTGAACCATATTAAGTAAAA
* **
1337895 AAAAGATATTATGAAATGACGAAG
64 AAAA-AAAGGATGAAATGACGAAG
* * * * * *
1337919 CAGAATAGGGAAGAAAGATGGATGGGTAGAGCCCTCTCTCTTATGTAAACCATGTTATGTAAAAA
1 -AGAATAGGAAAGAAAGATGGATGGGTGGAGCCCTCTCACTTATGTGAACCATATTAAGTAAAAA
**
1337984 AAAATGATAGGATGAAATGTTGAAGG
65 AAAA--A-AGGATGAAATGACGAA-G
* * ** *
1338010 AGAATAGGAATAAAAAGATGGATGGGTGAAGCTTTCTCACTTATGTGAACCATATTAAATAAAAA
1 AGAATAGGAA-AGAAAGATGGATGGGTGGAGCCCTCTCACTTATGTGAACCATATTAAGT-AAAA
1338075 AAAAAAAGACAAGATGAAATGACGGAAG
64 AAAAAAAG----GATGAAATGAC-GAAG
* * * *
1338103 AGAATAGGAAAGAAAGATCGATGGGTGTAGCTCTCTCATTTATGTG-ACCTATATTAAGTTTAAA
1 AGAATAGGAAAGAAAGATGGATGGGTGGAGCCCTCTCACTTATGTGAACC-ATATTAAG--TAAA
* * *
1338167 AAAAGATAA-GATGCAATGACGGAG
63 AAAA-AAAAGGATGAAATGACGAAG
* ** * * * * *
1338191 AAAAATAGGAATTAAAAATGGATGGGTGGAGCCCAT-TCTCTTATGTAAACCACACTAAGTAAAA
1 -AGAATAGGAAAGAAAGATGGATGGGTGGAGCCC-TCTCACTTATGTGAACCATATTAAGT-AAA
*
1338255 TAAAAAATATAGGATGAAATGACAGAGG
63 -AAAAAA-A-AGGATGAAATGAC-GAAG
* * * * * *
1338283 AGAATAAGAAAGAAAGATGGATGGATGGAGCCCTTTCTCTTATGTGAACCATATTAAAT-GAAAA
1 AGAATAGGAAAGAAAGATGGATGGGTGGAGCCCTCTCACTTATGTGAACCATATTAAGTAAAAAA
* *
1338347 AAATAGGATGAAATGATG--G
66 AAAAAGGATGAAATGACGAAG
* * * * ** *
1338366 AG--GA-G-AA-TAAGATGGGTGGGTGGAGCCCTCTCATTTATGTGAACTGTATTAAATAAAAAA
1 AGAATAGGAAAGAAAGATGGATGGGTGGAGCCCTCTCACTTATGTGAACCATATTAAGTAAAAAA
* * * *
1338426 AAGAAAAGATAAAATGATGAAAA
66 AA-AAAGGATGAAATGACG-AAG
* * * * * *
1338449 AGAATAGGAAAGAAAGATGGATAGGTGGAGCCCTCTCATTTTTTTGAATCATATT-A--AATAAA
1 AGAATAGGAAAGAAAGATGGATGGGTGGAGCCCTCTCACTTATGTGAACCATATTAAGTAAAAAA
* *
1338511 AAAAA-GATAAAATTACGAAG
66 AAAAAGGATGAAATGACGAAG
* * * *
1338531 AAACATAGGAAAGAAAGATGGATGAGTGGAGCCCTCTCTCTTATGTGAACCATATTAAGCAGAAA
1 AGA-ATAGGAAAGAAAGATGGATGGGTGGAGCCCTCTCACTTATGTGAACCATATTAAGTA-AAA
* * *
1338596 AAAAGATAGGATGAAATGATGCAG
64 AAAA-AAAGGATGAAATGACGAAG
* * * * * *
1338620 CAGAGTATGAAAAAAAGATGGATGGGTGGAGCCCTCTCTCTTATGTAAACCATATTGAGTAAAAA
1 -AGAATAGGAAAGAAAGATGGATGGGTGGAGCCCTCTCACTTATGTGAACCATATTAAGTAAAAA
*
1338685 AAAAGATAGGATGAAATGATGAAGG
65 AAAA-A-AGGATGAAATGACGAA-G
* * * *
1338710 AGAATAGGAAA-AAATATGGATGGGTGGAG--CTCT--C-T-TGTTAACCATATCAAATAAGAAA
1 AGAATAGGAAAGAAAGATGGATGGGTGGAGCCCTCTCACTTATGTGAACCATATTAAGTAA-AAA
1338768 AAAGAAAGGATGAAATGACGGAAG
65 AAA-AAAGGATGAAATGAC-GAAG
* * * * * * * * *
1338792 AGAATAGGAAAAAAAGTTAGATAGGTGGAGCTCTCTTATTTATGTGAACTATATTAA-T-TAAAA
1 AGAATAGGAAAGAAAGATGGATGGGTGGAGCCCTCTCACTTATGTGAACCATATTAAGTAAAAAA
1338855 AAAAA-GATGAAATGACGAAG
66 AAAAAGGATGAAATGACGAAG
* * * ***
1338875 AAAAATAGGAATGAAAGATGGATGGGTGGAGCCCTTTTTTTTTTATGTGAACCATATTAAGTAAA
1 -AGAATAGGAAAGAAAGATGGATGGGTGGAGCCC--TCTCACTTATGTGAACCATATTAAGT-AA
* *
1338940 ATAAAAAATATAGAATGAAATGACAGAGG
62 A-AAAAAA-A-AGGATGAAATGAC-GAAG
* * * * * * *
1338969 AGAATAAGAACGAAAGATTGATGGATGGAGCCCTTTCTCTTATGTGAACCATATTAAATGGAAAA
1 AGAATAGGAAAGAAAGATGGATGGGTGGAGCCCTCTCACTTATGTGAACCATATT-AA-GTAAAA
* * * *
1339034 AAAGATAGGATAAAATGATG--G
64 AAAAAAAGGATGAAATGACGAAG
* * * *
1339055 AG--GA-G-AA-TAAGATGGATGGGTGGAGCCCTCTTATTTATGTGAACCATATTAAGT-AAAAA
1 AGAATAGGAAAGAAAGATGGATGGGTGGAGCCCTCTCACTTATGTGAACCATATTAAGTAAAAAA
* * *
1339114 AGACATGATGAAATGACAGAAG
66 AAAAAGGATGAAATGAC-GAAG
* * *
1339136 AGAATAGGAAAGAAAGATGGATTGGTGGAGCTCTCTCACTTTTGTGAACCATATTAAGT-AAAAA
1 AGAATAGGAAAGAAAGATGGATGGGTGGAGCCCTCTCACTTATGTGAACCATATTAAGTAAAAAA
* * *
1339200 AAAAA-GATAAAATTATGAAG
66 AAAAAGGATGAAATGACGAAG
* * ** * * *
1339220 AAACATAGGAAA-AAAAATGGATAAGCGGAGCCCTCTCTCTTATGTGAACTATATTAAGTAAAAA
1 AGA-ATAGGAAAGAAAGATGGATGGGTGGAGCCCTCTCACTTATGTGAACCATATTAAGTAAAAA
**
1339284 AAAGATAA-GATGAAATGACGGATT
65 AAA-A-AAGGATGAAATGAC-GAAG
* * * * *
1339308 AGAATAGAAAACAAAGATGGATGGGTGGAGCCTTCTCTCTTATGTGAACCATATTAAGCAAAAAA
1 AGAATAGGAAAGAAAGATGGATGGGTGGAGCCCTCTCACTTATGTGAACCATATTAAG-TAAAAA
1339373 AAAAAAGATAAGATGAAATGACGAAGG
65 AAAAAAG----GATGAAATGACGAA-G
* * *
1339400 AGAATAGAAAGAAAAAAAGATGGATGGGTGGAGCTCTCTCACTTATGTGAACCATATAAAATAAA
1 AGAATAG---GAAAGAAAGATGGATGGGTGGAGCCCTCTCACTTATGTGAACCATAT----TAAG
*
1339465 TAAAAAAAAAGACAGGATGAAATTACGAAAG
59 TAAAAAAAAA-A-AGGATGAAATGACG-AAG
* * * * * *
1339496 AGAATAAGAAAGAAAGATAGATGGGTGGAGCTCTCTTATTTATGTGAACTATATTAAGTAAAAAA
1 AGAATAGGAAAGAAAGATGGATGGGTGGAGCCCTCTCACTTATGTGAACCATATTAAGT---AAA
1339561 AAAAAAGATAGGATGAAATGACTG-AG
63 AAAAAA-A-AGGATGAAATGAC-GAAG
* ** * *
1339587 AAAAATAGGAAAGAAAGATGGATGGGTAAAGCCCTTTCTCTTATGTGAACCATATTAAGTAAAAT
1 -AGAATAGGAAAGAAAGATGGATGGGTGGAGCCCTCTCACTTATGTGAACCATATTAAGT-AAA-
* **
1339652 AAAAAATATATGATGAAATGATAAAGG
63 AAAAAA-A-AGGATGAAATGACGAA-G
* * * * * * * *
1339679 AGAATAAGAAAGGAAGATGGATGGATGGATAGAGCCATTTCTCTTATATGAACCATATTAAATGA
1 AGAATAGGAAA-GAA-A--GATGGATGGGTGGAGCCCTCTCACTTATGTGAACCATATTAAGT-A
* * *
1339744 AAAAAAGATAGGATGAAATGATG--G
61 AAAAAAAAAAGGATGAAATGACGAAG
* * * * * *
1339768 AG----GGGAA-TAAGATTGATGGGTGGAGCCCGTCTCATTTATGTGAACCGTATTAAATTAAAA
1 AGAATAGGAAAGAAAGATGGATGGGTGGAGCCC-TCTCACTTATGTGAACCATATT-AAGTAAAA
* *
1339828 AAAAAGACATGATGAAACGACGGAAG
64 AAAAA-A-AGGATGAAATGAC-GAAG
* * * ** *
1339854 AGAATGGGAAAAAAAGATGGATAGGTGGAGCTATCTCACTTTTGTGAACCATATTAAGTTAAAAA
1 AGAATAGGAAAGAAAGATGGATGGGTGGAGCCCTCTCACTTATGTGAACCATATTAAG-TAAAAA
* * *
1339919 AATAAA--ATAAAATGATGAAG
65 AAAAAAGGATGAAATGACGAAG
* * * * * *
1339939 AAACATAAGAAAGAAAGATGGATGAGTGGAGCCATCTCTCTTATGTGAACCATATTATGTAAAAA
1 AGA-ATAGGAAAGAAAGATGGATGGGTGGAGCCCTCTCACTTATGTGAACCATATTAAGTAAAAA
* * *
1340004 AAAAATAGGATGGAATGATGGAG
65 AAAAA-AGGATGAAATGACGAAG
* * * * *
1340027 CAGAA-AGGAAAGAAAGATAGATGGGTGGAGCCCTCACTCTTATGTAAACCATATAAAGTAAAAA
1 -AGAATAGGAAAGAAAGATGGATGGGTGGAGCCCTCTCACTTATGTGAACCATATTAAGT---AA
* * *
1340091 AAAAAAAGATAGGATGGAATGATGGAG
62 AAAAAAA-A-AGGATGAAATGACGAAG
* * * * *
1340118 CAGAA-AGGAAAGAAAGATAGATGGGTGGAGCCCTCACTCTTATGTAAACCATATAAAGTAAAAA
1 -AGAATAGGAAAGAAAGATGGATGGGTGGAGCCCTCTCACTTATGTGAACCATATTAAGT--AAA
1340182 AAAAAAGATAGGATGAAATGACGAAGG
63 AAAAAA-A-AGGATGAAATGACGAA-G
* * * *
1340209 AGAATAGAAAGAAAAAAAGATGGATGGGTGGAGCTCTCTCACTTATGTAAACCATATTAAATAAA
1 AGAATAG---GAAAGAAAGATGGATGGGTGGAGCCCTCTCACTTATGTGAACCATATTAAGT-AA
1340274 AAAAAAAGACAGGATGAAATGACGGAAG
62 AAAAAAA-A-AGGATGAAATGAC-GAAG
* * ** *** *
1340302 AGAATAAGAAAGAAAGATAGATGGGTGGAGCTTTCTTTTTTATGTGAACTATATTAAGTAAAAAA
1 AGAATAGGAAAGAAAGATGGATGGGTGGAGCCCTCTCACTTATGTGAACCATATTAAGTAAAAAA
* *
1340367 AAAATAGGATGAAATAACTAAG
66 AAAA-AGGATGAAATGACGAAG
* * *
1340389 AAAAATAGGAAAGAAAGATGGATGGGTGGAGCCCTTTCTCTTATGTGAACCATATTAAGTAAAAT
1 -AGAATAGGAAAGAAAGATGGATGGGTGGAGCCCTCTCACTTATGTGAACCATATTAAGT-AAA-
*
1340454 AAAAAATATAGGATGAAATGACAGAGG
63 AAAAAA-A-AGGATGAAATGAC-GAAG
* * * ** *
1340481 AGAATAAGAAAGAAAGATAGATGGATGGAGCCCTCTCGTTTATGTGAACCATATTAAATAAAAAA
1 AGAATAGGAAAGAAAGATGGATGGGTGGAGCCCTCTCACTTATGTGAACCATATTAAGTAAAAAA
* ** *
1340546 AACAA-GACAAAATGGCAGAAG
66 AAAAAGGATGAAATGAC-GAAG
* * * *
1340567 AGAATAGGAAAGAAAGATGGATAGGAGGAGCCATCTCACTTTTGTGAACCATATTAAGT---AAA
1 AGAATAGGAAAGAAAGATGGATGGGTGGAGCCCTCTCACTTATGTGAACCATATTAAGTAAAAAA
* *
1340629 AAAAA-GATAAAATTACGAAG
66 AAAAAGGATGAAATGACGAAG
* * * * *
1340649 AAACATAGGAAAGAAAGATGGATGAGTGGAGCCCTCTCTCTTATGTAAACCATATTCAGTAAAAA
1 AGA-ATAGGAAAGAAAGATGGATGGGTGGAGCCCTCTCACTTATGTGAACCATATTAAGT-AAAA
*
1340714 AAAAAGATAAGATGAAATGACGAAGG
64 AAAAA-A-AGGATGAAATGACGAA-G
* * ** ** *
1340740 AGAATAGGAAAAAAAAGATGAATGGGTGGAGCTTTCTCACTTATGTGAACTGTATTAAATAAAAA
1 AGAATAGG-AAAGAAAGATGGATGGGTGGAGCCCTCTCACTTATGTGAACCATATTAAGT-AAAA
*
1340805 AAAAAGACAAGATGAAATGACGGAAG
64 AAAAA-A-AGGATGAAATGAC-GAAG
* * * *
1340831 AGAATAGGAAAGAAAGATAGATGGGTAGAGCTCTCTCATTTATGTG-ACCTATATTAAGTAAAAA
1 AGAATAGGAAAGAAAGATGGATGGGTGGAGCCCTCTCACTTATGTGAACC-ATATTAAGTAAAAA
*
1340895 AAAAGATAGAATGAAATGAC-AGAG
65 AAAA-A-AGGATGAAATGACGA-AG
* * * * **
1340919 AAAAATAGGAATGAAAAATGGATGGGTGGAGCCCTTTCTTTTATGTGAACCATATTAAGTAAAAT
1 -AGAATAGGAAAGAAAGATGGATGGGTGGAGCCCTCTCACTTATGTGAACCATATTAAGTAAAA-
**
1340984 AAAAAATATGGGATGAAATGATAAAGG
64 AAAAAA-A--GGATGAAATGACGAA-G
* * * * * *
1341011 AGAATAAGAAAGAAAGATGGATGGTTGGA-CCCTTTCTCTTATGTGAAACATATTAAATGAAAAA
1 AGAATAGGAAAGAAAGATGGATGGGTGGAGCCCTCTCACTTATGTGAACCATATTAAGT-AAAAA
* * *
1341075 AAGATAGGATGAAATGATG--G
65 AAAAAAGGATGAAATGACGAAG
* * * * * *
1341095 AG--GA-G-AA-TAAGATGGATGGGTGGAGCCCTCTAATTTATGTGAATCATATTAAATAAAAAA
1 AGAATAGGAAAGAAAGATGGATGGGTGGAGCCCTCTCACTTATGTGAACCATATTAAGTAAAAAA
*
1341155 AAGATAA-GATAAAATGACGAAAG
66 AA-A-AAGGATGAAATGACG-AAG
* * * *
1341178 AGAATAGGAAAGAAAAATGGATAGGTGGAGCCCTCTTACTTTTGTGAACCATATTAAGT--AAAA
1 AGAATAGGAAAGAAAGATGGATGGGTGGAGCCCTCTCACTTATGTGAACCATATTAAGTAAAAAA
* * *
1341241 AAAAA-GATAAAATTATGAAG
66 AAAAAGGATGAAATGACGAAG
* * *
1341261 AAACATAGGAAAGAAAGATGGATGAGTGGAGCCCTCTCTA-TTATGTGAATCATATTAAGTAAAA
1 AGA-ATAGGAAAGAAAGATGGATGGGTGGAGCCCTCTC-ACTTATGTGAACCATATTAAGT-AAA
1341325 AAAAAAAAGATAAGATGAAATGACGAAG
63 AAAAAAAAG----GATGAAATGACGAAG
* * *
1341353 CAGAATATGAAAGAAAGATGGATAGGTGGAGCCCTCTCTCTTATGT-AACCCATATTAAGTAAAA
1 -AGAATAGGAAAGAAAGATGGATGGGTGGAGCCCTCTCACTTATGTGAA-CCATATTAAGTAAAA
*
1341417 AAAAAGATAGGAAGAAATGACGAAGG
64 AAAAA-A-AGGATGAAATGACGAA-G
* * * * *
1341443 AGAATAGAAAAAAAAAGGTGGATGGGTGGAG--CTCT--C-T-TGTGAACCATATCAAATAAAAA
1 AGAATAG-GAAAGAAAGATGGATGGGTGGAGCCCTCTCACTTATGTGAACCATATTAAGTAAAAA
*
1341502 AAAGATAGGATGAAATGACGGAAG
65 AAA-AAAGGATGAAATGAC-GAAG
* ** * ** * *
1341526 AGAATA-GAAAAAAAGATACATAGGTGGAGCTTTCTCATTTATGTGAACTATATTAAGT----AA
1 AGAATAGGAAAGAAAGATGGATGGGTGGAGCCCTCTCACTTATGTGAACCATATTAAGTAAAAAA
*
1341586 AAAAA--ATGAAATGACGGAG
66 AAAAAGGATGAAATGACGAAG
* * *
1341605 AAAAATA-GAAATGAAAGATGGATGGGTGGAGCCCTTTCTCTTATGTGAACCATATTAAGTAAAT
1 -AGAATAGGAAA-GAAAGATGGATGGGTGGAGCCCTCTCACTTATGTGAACCATATTAAGTAAA-
* *
1341669 TAAAAAATATAGTATGAAATGACAGAGG
63 -AAAAAA-A-AGGATGAAATGAC-GAAG
* * * * * * *
1341697 AGAATAAGAAAGAAAGTTGGATGGATGGAGCCCTTTCTCTTATGTGAACCATATCAAATGAAAAA
1 AGAATAGGAAAGAAAGATGGATGGGTGGAGCCCTCTCACTTATGTGAACCATATTAAGT-AAAAA
** * *
1341762 ATGATAGGATGAAATGATG-A-
65 AAAAAAGGATGAAATGACGAAG
* * * *
1341782 AG-A-A-G-AA-TAAGATGGATGGGTGGAACCCTCTCATTTATGTGAATCATATTAAGTAAAAAA
1 AGAATAGGAAAGAAAGATGGATGGGTGGAGCCCTCTCACTTATGTGAACCATATTAAGTAAAAAA
* *
1341842 AGACAGGATGAAATGACAGAAG
66 AAAAAGGATGAAATGAC-GAAG
* ** * *
1341864 AGAATAGGAAAGAAAGATGGATAGGTGGAGCTTTTTCACTTTTGTG-ACCATATTAAGT--AAAA
1 AGAATAGGAAAGAAAGATGGATGGGTGGAGCCCTCTCACTTATGTGAACCATATTAAGTAAAAAA
* * *
1341926 AAAAA-GATAAAATTACAAAG
66 AAAAAGGATGAAATGACGAAG
* * * ** * **
1341946 AAACATAGGAAAGAAAAATGGATGAGTATAGCTCTCTTTCTTATGTGAACCATATTAAGTAAAAA
1 AGA-ATAGGAAAGAAAGATGGATGGGTGGAGCCCTCTCACTTATGTGAACCATATTAAGTAAAAA
* * *
1342011 AAGATAGGATGAAATGACGGAG
65 AAAAAAGGATGAAATGACGAAG
* * * *
1342033 CAGAATAGAAAAAAAAGATGGATGGGTGGAGCCCTCTCTCTTATGTGAACCATATTAAGCAAAAA
1 -AGAATAGGAAAGAAAGATGGATGGGTGGAGCCCTCTCACTTATGTGAACCATATTAAG-TAAAA
* * *
1342098 AAAAACATAAGATGAAATGATAGAGG
64 AAAAA-A-AGGATGAAATGA-CGAAG
* * * ** * *
1342124 AGAATAGGAAAAAAAGATGGATTGGCGGAGCTTTCTCTCTTATGTGAACCATATTAAATAAAAAA
1 AGAATAGGAAAGAAAGATGGATGGGTGGAGCCCTCTCACTTATGTGAACCATATTAAGTAAAAAA
* * * *
1342189 CTAATAGGATAAAATGA-TAGAG
66 -AAAAAGGATGAAATGACGA-AG
* * * * * *
1342211 AAAAATAGGAAAAAAAGACCGG-TGGGTGGAG-CCTCTCATTTAAGTGAACCATATTAAATAAAA
1 -AGAATAGGAAAGAAAGA-TGGATGGGTGGAGCCCTCTCACTTATGTGAACCATATTAAGTAAAA
*
1342274 AAAAAGACAGGATGAAATGATGGAAG
64 AAAAA-A-AGGATGAAATGA-CGAAG
* * *
1342300 AGAATAGGAAAGAAAGATGGATGGGTGGAGCCATCTCTCTTATGTGAACCATTTTAAGTAAAAAA
1 AGAATAGGAAAGAAAGATGGATGGGTGGAGCCCTCTCACTTATGTGAACCATATTAAGTAAAAAA
*
1342365 AAGATAGGATGAAATGAC-AGAG
66 AA-AAAGGATGAAATGACGA-AG
* * * * ** *
1342387 AAAATAAGAAAGAAAGATGGATGGGTGGAGCCCTCTCTCTTATATGAACCATATTAAGT-TTAAG
1 AGAATAGGAAAGAAAGATGGATGGGTGGAGCCCTCTCACTTATGTGAACCATATTAAGTAAAAAA
* *
1342451 AAAAAGGATGAAATAATAGAAG
66 AAAAAGGATGAAATGA-CGAAG
* ** * * * * *
1342473 GGAATA--AAA-AAGAGATGGATGAATGAAGCTCTATCAC---TGTAAACCATATTAATTAAAAT
1 AGAATAGGAAAGAA-AGATGGATGGGTGGAGCCCTCTCACTTATGTGAACCATATTAAGTAAAA-
*
1342532 AAAGAGATAGGATGAAATGACAGAAGAG
64 AAA-A-AAAGGATGAAATGAC-G-A-AG
* * * * * ** *
1342560 AGAATACGAAAGAATGATAGACGGGTGGAGCCTTCTCTTTTATGTGAACCATATTTAGT-AAAAA
1 AGAATAGGAAAGAAAGATGGATGGGTGGAGCCCTCTCACTTATGTGAACCATATTAAGTAAAAAA
* **
1342624 AAAAAGATATGAAATGATAAAAG
66 AAAAAG-GATGAAATGA-CGAAG
* * * * * ** * *
1342647 AGACTAAGAAAGAAAGATGGATGTGTGGAGCCTTCCCTTTTATGTGAACCATATTAAATTAAAAA
1 AGAATAGGAAAGAAAGATGGATGGGTGGAGCCCTCTCACTTATGTGAACCATATTAAGTAAAAAA
* * * **
1342712 AGATAGGATGATATGATAAAGG
66 AAAAAGGATGAAATGACGAA-G
* * * * * *
1342734 AGAATAAGAAAGAAAAAT-GATGGGTGGAACCTTTTCTCTTATGTGA
1 AGAATAGGAAAGAAAGATGGATGGGTGGAGCCCTCTCACTTATGTGA
1342780 TATGAAATAT
Statistics
Matches: 8555, Mismatches: 1541, Indels: 1284
0.75 0.14 0.11
Matches are distributed among these distances:
68 15 0.00
69 2 0.00
70 6 0.00
71 2 0.00
72 14 0.00
73 18 0.00
74 3 0.00
75 8 0.00
76 11 0.00
77 7 0.00
78 80 0.01
79 162 0.02
80 442 0.05
81 299 0.03
82 274 0.03
83 477 0.06
84 382 0.04
85 359 0.04
86 509 0.06
87 587 0.07
88 1189 0.14
89 808 0.09
90 873 0.10
91 1056 0.12
92 587 0.07
93 197 0.02
94 69 0.01
95 84 0.01
96 18 0.00
97 2 0.00
98 9 0.00
99 4 0.00
100 2 0.00
ACGTcount: A:0.46, C:0.09, G:0.23, T:0.22
Consensus pattern (86 bp):
AGAATAGGAAAGAAAGATGGATGGGTGGAGCCCTCTCACTTATGTGAACCATATTAAGTAAAAAA
AAAAAGGATGAAATGACGAAG
Found at i:1334377 original size:86 final size:81
Alignment explanation
Indices: 1334121--1342445 Score: 1473
Period size: 91 Copynumber: 95.6 Consensus size: 81
1334111 AGGAGAATAA
* * * * * * * *
1334121 GAAAGAAAGATGGATGGATGAAGCCTTTTCTCTTATGTGAACCATATTAAATGAAAAAGAGATAG
1 GAAAGAAAGATGGATGG-TGGAGCCCTCTCACTTTTGTGAACCATATTAAGT-AAAAA-AGACAA
* *
1334186 GATGAAATGATG---GA-G
63 GATAAAATGAAGAAAGATG
* * *
1334201 GAGAA-TAAGATGGATGGGTGAAGCCCTCTCA-TTTATGTGAACCATATTAAATAAAAAAGACAA
1 GA-AAGAAAGATGGAT-GGTGGAGCCCTCTCACTTT-TGTGAACCATATTAAGTAAAAAAGACAA
*
1334264 GATAAAATGACGAAAGAGAATAG
63 GATAAAATGAAG-AA-AG-AT-G
*
1334287 GAAAGAAAGATGGATAGGTGGAGCCCTCTCACTTTTGAGAACCATATTAAGTAACAAAAGA-AA-
1 GAAAGAAAGATGGAT-GGTGGAGCCCTCTCACTTTTGTGAACCATATTAAGTAA-AAAAGACAAG
* *
1334350 A-AATTATGAAGAAACG-TAC
64 ATAA-AATGAAGAAA-GAT-G
* *
1334369 GAAAGAAAGATGGATGAGTGGAGCCCTCTCTCTTTTGTGAACCATATTAAGTAAAAAAAAAGATA
1 GAAAGAAAGATGGATG-GTGGAGCCCTCTCACTTTTGTGAACCATATTAAGT---AAAAAAGACA
* * * *
1334434 GGATGAAATGACAGATCAGAATAT
62 AGATAAAATGA-AGA-AAG-AT-G
* * * *
1334458 GAGAA-AAAGATGGATGGGTGGAGCCCTCTCTCTTATGTAAACCATATTAAGTAAAAAAAAGATA
1 GA-AAGAAAGATGGAT-GGTGGAGCCCTCTCACTTTTGTGAACCATATTAAGT--AAAAAAGACA
* * *
1334522 AGATGAAATGACGAAGGAGAATA
62 AGATAAAATGAAGAA--AG-ATG
* * *
1334545 GAAAAAAAGATGGATGGGTGGAG--CTCT--C--TTGTGAACCATATTAAATAAAGAAAAAGAGA
1 GAAAGAAAGATGGAT-GGTGGAGCCCTCTCACTTTTGTGAACCATATTAAGT--A-AAAAAGACA
* * *
1334604 GGATGAAATGACGGAAGAGAATAG
62 AGATAAAATGA-AGAA-AG-AT-G
* * * * *
1334628 GAAA-AAAGATAGATAGGTAGAGCTCTCTCA-TTTATGCGAACTATATTAAGT-AAAAA-A-AAG
1 GAAAGAAAGATGGAT-GGTGGAGCCCTCTCACTTT-TGTGAACCATATTAAGTAAAAAAGACAAG
* *
1334688 ATGAAATGACAGAGAAAAATTG
64 ATAAAATG--A-AGAAAGA-TG
* * * * * * *
1334710 GAATGAAAGATGGATGGGTGGAGCCCTTTCTCTTATGTGAACTATATTAAGTAAAATAAAAAATA
1 GAAAGAAAGATGGAT-GGTGGAGCCCTCTCACTTTTGTGAACCATATTAAGT--AA-AAAAGACA
* ** *
1334775 TAGGATGAAATGATAGAGGCGAATAA
62 -A-GATAAAATGA-AGA-AAG-AT-G
* * * * *
1334801 GAAAGAAAGATGGATGGATGGAGCCCTTTCTCTTATGTGAACCATATTAAAT-GAAAA-A-AAGA
1 GAAAGAAAGATGGATGG-TGGAGCCCTCTCACTTTTGTGAACCATATTAAGTAAAAAAGACAAGA
** *
1334863 TAGGATGAAG--TGATG
65 TAAAATGAAGAAAGATG
* * * *
1334878 GAGGAGAATAAGATGGATGGGTGGAGCCCTCT-AATTTATGTGAATCATATTAAATAAAAAAAAG
1 GA-AAG-A-AAGATGGAT-GGTGGAGCCCTCTCACTTT-TGTGAACCATATTAAGT--AAAAAAG
*
1334942 ACAAGATAAAATGACGAAAGAGAATAG
59 ACAAGATAAAATGAAG-AA-AG-AT-G
* * * *
1334969 GAAAGAAAAATGGATAGGTGGAGCCATCTCACTTTTGCGAACCATATTAAGTTAAAAAATA-AA-
1 GAAAGAAAGATGGAT-GGTGGAGCCCTCTCACTTTTGTGAACCATATTAAG-TAAAAAAGACAAG
* * *
1335032 ATAAAATGACGAAAAAACATAA
64 ATAAAAT---GAAGAAAGAT-G
* * *
1335054 GAAAGAAAGATGGATGAGTGGAGCCCTCGC-TTTTATGTGAACCATATTAAGTGAAAAAA-AAAA
1 GAAAGAAAGATGGATG-GTGGAGCCCTCTCACTTT-TGTGAACCATATTAAGT-AAAAAAGACAA
* *
1335117 GATAGGATGAAATGACAGAGCAGAATAA
63 GAT---A--AAATGA-AGA-AAG-AT-G
* * * ** * * *
1335145 GAAAGAAAAATAGATGGGTGGAGCCCTCTCTCTTACGTAAACCATATTAAGCAAAAACAAAAGAT
1 GAAAGAAAGATGGAT-GGTGGAGCCCTCTCACTTTTGTGAACCATATTAAG---TAA-AAAAGAC
* *
1335210 ATGATGAAATGACGAAGGAAA-ATAG
61 AAGAT-AAA--ATGAA-GAAAGAT-G
* * * ** * * * *
1335235 TAAAAAAAATATGGATGAGTGGAGCTTTGTCACTTATGTGAACCATATTAAATAAAAAAAAAAGG
1 -GAAAGAAAGATGGATG-GTGGAGCCCTCTCACTTTTGTGAACCATATTAAGT----AAAAAAGA
* * * *
1335300 CAGGATGAAATGACGGAAGAGAATAA
60 CAAGATAAAATGA-AGAA-AG-AT-G
* ** *
1335326 GAAAGAAAGATAGATAGGTGGAGCTTTC-CTA-TTTATGTGAACTATATTAAGTAAAAAAAAAAG
1 GAAAGAAAGATGGAT-GGTGGAGCCCTCTC-ACTTT-TGTGAACCATATTAAGT----AAAAAAG
* * *
1335389 AGATAGGATGAAATGACTAAGAAAAATAG
59 ACA-A-GATAAAATG---AAGAAAGAT-G
* * * * *
1335418 GAAAGAAAGATGGATGGGTGGAGCCCTTTCTCTTATGTGAACCATATTAAGTAAAACAAAAAATA
1 GAAAGAAAGATGGAT-GGTGGAGCCCTCTCACTTTTGTGAACCATATTAAGT--AA-AAAAGACA
* *
1335483 TAGGATGAAATG-AGAAAGGAGAATAA
62 -A-GATAAAATGAAG-AA--AG-AT-G
* * * * * * *
1335509 GAAAGAAAGATGAATGGATGGAGCCCTTTCTCTTATGTGAACCATATTAAATGAAAAAAAGATAG
1 GAAAGAAAGATGGATGG-TGGAGCCCTCTCACTTTTGTGAACCATATT-AA-GTAAAAAAGACAA
* *
1335574 GATGAAATGATG---GA-G
63 GATAAAATGAAGAAAGATG
* * * *
1335589 GAGAA-TAAGATGGATGGGTGGAGCCCACTCA-TTTATGTGAATCATATTAAATTAAAAAAAGAC
1 GA-AAGAAAGATGGAT-GGTGGAGCCCTCTCACTTT-TGTGAACCATATT-AAGT-AAAAAAGAC
* * *
1335652 ATGATGAAATGACGGAAGAGAATAG
61 AAGATAAAATGA-AGAA-AG-AT-G
* * * *
1335677 AAAAGAAAGATGGACAGGTGGAGCCATCTCACTTTTGTGAACCATATTAAGTTAAAAAATA-AA-
1 GAAAGAAAGATGGA-TGGTGGAGCCCTCTCACTTTTGTGAACCATATTAAG-TAAAAAAGACAAG
* *
1335740 ATAAAATGACGAAAAAACATAG
64 ATAAAAT---GAAGAAAGAT-G
* * * *
1335762 GAAAGAAAGATGGATGAGTGAAGCCCTCTCTCTTATGTGAACCATATTAAGTAAAAAAAAAGATA
1 GAAAGAAAGATGGATG-GTGGAGCCCTCTCACTTTTGTGAACCATATTAAGT---AAAAAAGACA
* * *
1335827 GGATGAAATGACAGAGCAGAATAG
62 AGATAAAATGA-AGA-AAG-AT-G
* ** ** * * * *
1335851 GAAAGAAAGATAGATGGGTGGAGCCCTCTTTCTTACGTAAACCATATTAAGCAAAAAAAATAAGA
1 GAAAGAAAGATGGAT-GGTGGAGCCCTCTCACTTTTGTGAACCATATTAAGTAAAAAAGACAAGA
*
1335916 TAAGATGAAATGACGAAGGAAAATAG
65 TAAAATG-AA-GA--AA-G---AT-G
* * ** * *
1335942 TAAAAAAAAGATGGATGGGTGGAGCTTTCTCACTTATGTGAACCATATTAAATAAAAAAAAGACA
1 -GAAAGAAAGATGGAT-GGTGGAGCCCTCTCACTTTTGTGAACCATATTAAGT--AAAAAAGACA
* * * *
1336007 GGATGAAATGACGGAAGAGAATAA
62 AGATAAAATGA-AGAA-AG-AT-G
* ** * * * *
1336031 GAAAGAAAGATAGATGGGTGGAGCTTTCTTA-TTTATGTGAACTATATTAAGTAAAAAAAAAAAA
1 GAAAGAAAGATGGAT-GGTGGAGCCCTCTCACTTT-TGTGAACCATATTAAGT-AAAAAAGACAA
*
1336095 GATAGGATGAAATGACTGAGAAAAATAG
63 GAT---A--AAATGA---AGAAAGAT-G
* * * * * * *
1336123 GAAAGAAAAATGGATGGGTGGAGACCTTTCCCTTATGTGAACCATATTAAGTAAAATAA-AAAAT
1 GAAAGAAAGATGGAT-GGTGGAGCCCTCTCACTTTTGTGAACCATATTAAGTAAAA-AAGACAAG
*
1336187 ATAAAATGAAATGATTGAGGAGAATAA
64 ATAAAATG-AA-GA---A--AG-AT-G
* * *** * ** ** *
1336214 GAAAGAAAGATAGATGGATGGAG-CC-AT-A-TTAAATGAA--AGAAAAAG-ATAGGATGA-AAT
1 GAAAGAAAGATGGATGG-TGGAGCCCTCTCACTTTTGTGAACCATATTAAGTA-AAAAAGACAA-
** *
1336271 GATTGAGGAT-AA-TAAGATG
63 GA-T-AAAATGAAGAAAGATG
* *** ** **** * * ** * * * * * ** * *
1336290 GATAG---G-TGGAGCCCTCTCATTTATGTGAAGTATATTAAACA-A-AAAAAAAGACAAGATAA
1 GAAAGAAAGATGGA-TGGT-GGAGCCCTCTCACTTTTGTGAACCATATTAAGTAA-AAAAGACAA
* * *
1336349 AAT-AAC-GAA-AGAGAATAG
63 GATAAAATGAAGAAAG-AT-G
* * *
1336367 GAAAGAAAGATGGATAGGTGGAGCCCCCTCACTTTTGTGAACCATATTAAGTACAAAAAGATAAA
1 GAAAGAAAGATGGAT-GGTGGAGCCCTCTCACTTTTGTGAACCATATTAAGTA-AAAAAGACAAG
* * *
1336432 ATTACA--AAGAAACATAG
64 ATAAAATGAAGAAAGAT-G
* * * * *
1336449 GAAAGAAAGATAGATGAGTGGAGCCCTCTCTCTTATGTCAACCATATTAAGTAAAAAAAAAAGAT
1 GAAAGAAAGATGGATG-GTGGAGCCCTCTCACTTTTGTGAACCATATTAAGT----AAAAAAGAC
* * *
1336514 AGGATGAAATAATGGAGCAGAATAT-
61 AAGAT--AA-AATGAAG-A-AAGATG
* * * * * * *
1336539 GAAAAAAAGATGGATGGGTGGAGCACTCTCTCTTATGTAAACCATATTAAGTAAAAAAAAAAAAT
1 GAAAGAAAGATGGAT-GGTGGAGCCCTCTCACTTTTGTGAACCATATTAAGT--AAAAAAGACA-
*
1336604 AGGATGAAATGACA-AAGGAGAATAGG
62 A-GATAAAATGA-AGAA--AG-AT--G
* * *
1336630 GAAA-AAAGATGGATGGGTGAAG--CTCT-A---TTGTGAACCATATTAAATAAAAAA-ACATGA
1 GAAAGAAAGATGGAT-GGTGGAGCCCTCTCACTTTTGTGAACCATATTAAGTAAAAAAGACAAGA
* *
1336687 TGAAATGACGAATGAGAATAG
65 TAAAATGAAGAA--AG-AT-G
* * * * * *
1336708 GAAAAAAAGATAGATAGGTGGAACTCTTTCA-TTTATGTGAACTATATTAAGTAAAAAA-A-AAG
1 GAAAGAAAGATGGAT-GGTGGAGCCCTCTCACTTT-TGTGAACCATATTAAGTAAAAAAGACAAG
* * *
1336770 ATGAAATGACGGAGAAAAATC
64 ATAAAATGA---AGAAAGATG
* * * * * *
1336791 GAATGAAAGATGGATAGGTGGAGCCCTTTCTCTTATGTGAACCATATTAAGTGAAAGAAAAAAAT
1 GAAAGAAAGATGGAT-GGTGGAGCCCTCTCACTTTTGTGAACCATATTAAGT---A-AAAAAGAC
* *
1336856 ATAGGATGAAATGACA-AAGGAGAATAA
61 A-A-GATAAAATGA-AGAA--AG-AT-G
* * * * * *
1336883 GAAAGAAAGATGGATGGATGGAGCCCTTTCTCTTATGTGAACCATATTAAATGAAAAAAGATATG
1 GAAAGAAAGATGGATGG-TGGAGCCCTCTCACTTTTGTGAACCATATTAAGT-AAAAAAGACAAG
*
1336948 ATGAAATGATAG---G--G
64 ATAAAATGA-AGAAAGATG
* * * *
1336962 GAGAA-TAAGATGGATGGGTGGAGTCCTCTCA-TTTATGAGAACCATATTGAATAGAAAAAAAGA
1 GA-AAGAAAGATGGAT-GGTGGAGCCCTCTCACTTT-TGTGAACCATATT--A-AGTAAAAAAGA
* *
1337025 CATGATGAAATGACGGAAGAAA-ATAG
60 CAAGAT-AAA--A-TGAAGAAAGAT-G
* ** * * *
1337051 GAAAGAAAGATGGATAGGTAGAGCTATCTCACTTTTGTGAACCATCTTAAGTTAAAAAA-ATAAA
1 GAAAGAAAGATGGAT-GGTGGAGCCCTCTCACTTTTGTGAACCATATTAAG-TAAAAAAGACAAG
* *
1337115 ATAAAATGACAAATAAACATAG
64 ATAAAATG---AAGAAAGAT-G
* ** * * *
1337137 GAAAGAAAGATGGATGAGTGGAGTCCTCTGTCTTATGTGAACCATATTAAGTAAAAAAAAAAAGA
1 GAAAGAAAGATGGATG-GTGGAGCCCTCTCACTTTTGTGAACCATATTAAGTAAAAAAGACAAGA
1337202 TAGGATGAAATGACGGAGCAAA-ATAG
65 T---A--AAATGA---AG-AAAGAT-G
* * * * * *
1337228 G-AAGAAAGATAGATAGGTGGAGCCCTTTCTCTTATGTAAACCATA-TAATGTAAAAAA-AAAAG
1 GAAAGAAAGATGGAT-GGTGGAGCCCTCTCACTTTTGTGAACCATATTAA-GTAAAAAAGACAAG
*
1337290 ATAGGATGAAATGACGAAGGAGAATAG
64 AT---A--AAATGAAGAA--AG-AT-G
* * * * *
1337317 AAAGAAAAAAAGATGGATGGGCGGAGCTCTCTCACTTATGTGAACCATATTAAATAAAAAAAAGA
1 ---GAAAGAAAGATGGAT-GGTGGAGCCCTCTCACTTTTGTGAACCATATTAAGT--AAAAAAGA
* * * *
1337382 CAGGATGAAATGACGGAAGAGAATAA
60 CAAGATAAAATGA-AGAA-AG-AT-G
* * * * * *
1337408 GAAAGGAAGATAGATAGGTGGAGCTCTCTTA-TTTATGTGAACTATATTAAGTAAAAAAAAGATA
1 GAAAGAAAGATGGAT-GGTGGAGCCCTCTCACTTT-TGTGAACCATATTAAGT--AAAAAAGACA
* * * *
1337472 GGATGAAATGACTGAGAAAAATAA
62 AGATAAAATGA---AGAAAGAT-G
* * * * * * * *
1337496 GAAAGAAAGATTGATGGGTGGAGACCTTTCTCTTATGTGAACCGTATTAAGTAAAATAAAAATAA
1 GAAAGAAAGATGGAT-GGTGGAGCCCTCTCACTTTTGTGAACCATATTAAGT-AAA-AAAGA-CA
* *
1337561 AGGATGAAATGACAGAAGAGAATAA
62 A-GATAAAATGA-AGAA-AG-AT-G
* * * * *
1337586 GAAAGAAAGATGGATGGATGGAGCCCTTTCTCTTATGTGAACCATATTAGATGAAAAAAAGGATA
1 GAAAGAAAGATGGATGG-TGGAGCCCTCTCACTTTTGTGAACCATATTA-A-GTAAAAAA-GACA
* * *
1337651 GGATGAAATGATG---GA-G
62 AGATAAAATGAAGAAAGATG
* * *
1337667 GAGAA-TAAGATGGATGGGTGGAGCCCTCTCA-TTTATGCGAACCATATTAAATAAAAAAAAGAC
1 GA-AAGAAAGATGGAT-GGTGGAGCCCTCTCACTTT-TGTGAACCATATTAAGT--AAAAAAGAC
* *
1337730 AGGATGAAATGACAGAAGAGAATAG
61 AAGATAAAATGA-AGAA-AG-AT-G
*** * * *
1337755 GAAAGAAAGATGGATAAAAGGAGCCCTCTCACTTCTGTAAACCATATTTAGTAAAAAA-A-AAGA
1 GAAAGAAAGATGGAT-GGTGGAGCCCTCTCACTTTTGTGAACCATATTAAGTAAAAAAGACAAGA
*
1337818 TAAAATTACGAAAAAACG-TAG
65 TAAAA-T--GAAGAAA-GAT-G
* * *
1337839 GAAAGAAAGATGGATGAGTGGAGCCCTCTC-TTTTATGTGAACTATATTAAGTAAAAAAAAGATA
1 GAAAGAAAGATGGATG-GTGGAGCCCTCTCACTTT-TGTGAACCATATTAAGT--AAAAAAGACA
** * *
1337903 TTATGAAATGACGAAGCAGAATAG
62 AGATAAAATGAAGAA--AG-AT-G
* * * * * * * *
1337927 GGAAGAAAGATGGATGGGTAGAGCCCTCTCTCTTATGTAAACCATGTTATGTAAAAAAAAATGAT
1 GAAAGAAAGATGGAT-GGTGGAGCCCTCTCACTTTTGTGAACCATATTAAGT---AAAAAA-GAC
* * **
1337992 AGGATGAAATGTTGAAGGAGAATAG
61 AAGATAAAATGAAGAA--AG-AT-G
* * ** * *
1338017 GAATAAAAAGATGGATGGGTGAAGCTTTCTCACTTATGTGAACCATATTAAATAAAAAAAAAAAA
1 GAA-AGAAAGATGGAT-GGTGGAGCCCTCTCACTTTTGTGAACCATATTAAGT------AAAAAA
* *
1338082 GACAAGATGAAATGACGGAAGAGAATAG
58 GACAAGATAAAATGA-AGAA-AG-AT-G
* * *
1338110 GAAAGAAAGATCGATGGGTGTAGCTCTCTCA-TTTATGTG-ACCTATATTAAGTTTAAAAAAAGA
1 GAAAGAAAGATGGAT-GGTGGAGCCCTCTCACTTT-TGTGAACC-ATATTAAG--T-AAAAAAGA
* ** *
1338173 TAAGATGCAATGACGGAGAAAAATAG
60 CAAGATAAAATGA---AGAAAGAT-G
** * * * * * * * *
1338199 GAATTAAAAATGGATGGGTGGAGCCCAT-TCTCTTATGTAAACCACACTAAGTAAAATAAAAAAT
1 GAAAGAAAGATGGAT-GGTGGAGCCC-TCTCACTTTTGTGAACCATATTAAGT--AA-AAAAGAC
* * *
1338263 ATAGGATGAAATGACAGAGGAGAATAA
61 A-A-GATAAAATGA-AGA-AAG-AT-G
* * * * * *
1338290 GAAAGAAAGATGGATGGATGGAGCCCTTTCTCTTATGTGAACCATATTAAATGAAAAAA-ATAGG
1 GAAAGAAAGATGGATGG-TGGAGCCCTCTCACTTTTGTGAACCATATTAAGT-AAAAAAGACAAG
* *
1338354 ATGAAATGATG---GA-G
64 ATAAAATGAAGAAAGATG
* * ** * *
1338368 GAGAA-TAAGATGGGTGGGTGGAGCCCTCTCA-TTTATGTGAACTGTATTAAATAAAAAAAAGAA
1 GA-AAGAAAGATGGAT-GGTGGAGCCCTCTCACTTT-TGTGAACCATATTAAGT--AAAAAAGAC
*
1338431 AAGATAAAATGATGAAAAAGAATAG
61 AAGATAAAATGA--AGAAAG-AT-G
* * * *
1338456 GAAAGAAAGATGGATAGGTGGAGCCCTCTCATTTTTTTGAATCATATTAAAT-AAAAA-A-AAGA
1 GAAAGAAAGATGGAT-GGTGGAGCCCTCTCACTTTTGTGAACCATATTAAGTAAAAAAGACAAGA
*
1338518 TAAAATTACGAAGAAACATAG
65 TAAAA-T--GAAGAAAGAT-G
* * * *
1338539 GAAAGAAAGATGGATGAGTGGAGCCCTCTCTCTTATGTGAACCATATTAAGCAGAAAAAAAGATA
1 GAAAGAAAGATGGATG-GTGGAGCCCTCTCACTTTTGTGAACCATATT-A--AGTAAAAAAGACA
* * *
1338604 GGATGAAATGATGCAGCAGAGTAT-
62 AGAT-AAA--ATGAAG-AAAG-ATG
* * * * * *
1338628 GAAAAAAAGATGGATGGGTGGAGCCCTCTCTCTTATGTAAACCATATTGAGTAAAAAAAAAGATA
1 GAAAGAAAGATGGAT-GGTGGAGCCCTCTCACTTTTGTGAACCATATTAAGT---AAAAAAGACA
* * *
1338693 GGATGAAATGATGAAGGAGAATAG
62 AGATAAAATGAAGAA--AG-AT-G
* *
1338717 GAAA-AAATATGGATGGGTGGAG--CTCT--C--TTGTTAACCATATCAAATAAG-AAAAAAGA-
1 GAAAGAAAGATGGAT-GGTGGAGCCCTCTCACTTTTGTGAACCATAT----TAAGTAAAAAAGAC
* *
1338773 AAGGATGAAATGACGGAAGAGAATAG
61 AA-GATAAAATGA-AGAA-AG-AT-G
* * * * * * *
1338799 GAAAAAAAGTTAGATAGGTGGAGCTCTCTTA-TTTATGTGAACTATATTAATTAAAAAA-A-AAG
1 GAAAGAAAGATGGAT-GGTGGAGCCCTCTCACTTT-TGTGAACCATATTAAGTAAAAAAGACAAG
* *
1338861 ATGAAATGACGAAGAAAAATAG
64 AT-AAA--ATGAAGAAAGAT-G
* * *** *
1338883 GAATGAAAGATGGATGGGTGGAGCCCTTTTTTTTTTATGTGAACCATATTAAGTAAAATAAAAAA
1 GAAAGAAAGATGGAT-GGTGGAGCCC-TCTCACTTT-TGTGAACCATATTAAGT--AA-AAAAGA
* * * *
1338948 TATAGAATGAAATGACAGAGGAGAATAA
60 CA-AG-ATAAAATGA-AGA-AAG-AT-G
* * * * * * *
1338976 GAACGAAAGATTGATGGATGGAGCCCTTTCTCTTATGTGAACCATATTAAATGGAAAAAAAGATA
1 GAAAGAAAGATGGATGG-TGGAGCCCTCTCACTTTTGTGAACCATATT-AA--GTAAAAAAGACA
* *
1339041 GGATAAAATGATG---GA-G
62 AGATAAAATGAAGAAAGATG
* * *
1339057 GAGAA-TAAGATGGATGGGTGGAGCCCTCTTA-TTTATGTGAACCATATTAAGTAAAAAAGACAT
1 GA-AAGAAAGATGGAT-GGTGGAGCCCTCTCACTTT-TGTGAACCATATTAAGTAAAAAAGACAA
*
1339120 GATGAAATGACAGAAGAGAATAG
63 GATAAAATGA-AGAA-AG-AT-G
* *
1339143 GAAAGAAAGATGGATTGGTGGAGCTCTCTCACTTTTGTGAACCATATTAAGTAAAAAA-AAAAGA
1 GAAAGAAAGATGGA-TGGTGGAGCCCTCTCACTTTTGTGAACCATATTAAGTAAAAAAGACAAGA
*
1339207 TAAAATTATGAAGAAACATAG
65 T-AAA--ATGAAGAAAGAT-G
* * * * * * *
1339228 GAAA-AAAAATGGATAAGCGGAGCCCTCTCTCTTATGTGAACTATATTAAGTAAAAAAAAGATAA
1 GAAAGAAAGATGGAT-GGTGGAGCCCTCTCACTTTTGTGAACCATATTAAGT--AAAAAAGACAA
* * *
1339292 GATGAAATGACGGATTAGAATAG
63 GATAAAATGA-AGA-AAG-AT-G
* * * * * *
1339315 AAAACAAAGATGGATGGGTGGAGCCTTCTCTCTTATGTGAACCATATTAAGCAAAAAAAAAAAAG
1 GAAAGAAAGATGGAT-GGTGGAGCCCTCTCACTTTTGTGAACCATATTAAG------TAAAAAAG
* * *
1339380 ATAAGATGAAATGACGAAGGAGAATAG
59 ACAAGATAAAATGAAGAA--AG-AT-G
* * * *
1339407 AAAGAAAAAAAGATGGATGGGTGGAGCTCTCTCACTTATGTGAACCATATAAAATAAATAAAAAA
1 ---GAAAGAAAGATGGAT-GGTGGAGCCCTCTCACTTTTGTGAACCATAT----TAAGT---AAA
* * * * *
1339472 AAAGACAGGATGAAATTACGAAAGAGAATAA
55 AAAGACAAGATAAAATGAAG-AA-AG-AT-G
* * * * * *
1339503 GAAAGAAAGATAGATGGGTGGAGCTCTCTTA-TTTATGTGAACTATATTAAGTAAAAAAAAAAAA
1 GAAAGAAAGATGGAT-GGTGGAGCCCTCTCACTTT-TGTGAACCATATTAAGT-AAAAAAGACAA
*
1339567 GATAGGATGAAATGACTGAGAAAAATAG
63 GAT---A--AAATGA---AGAAAGAT-G
** * * * * *
1339595 GAAAGAAAGATGGATGGGTAAAGCCCTTTCTCTTATGTGAACCATATTAAGTAAAATAAAAAATA
1 GAAAGAAAGATGGAT-GGTGGAGCCCTCTCACTTTTGTGAACCATATTAAGT--AA-AAAAGACA
* *
1339660 TATGATGAAATGATA-AAGGAGAATAA
62 -A-GATAAAATGA-AGAA--AG-AT-G
* * * * * * *
1339686 GAAAGGAAGATGGATGGATGGATAGAGCCATTTCTCTTATATGAACCATATTAAATGAAAAAAAG
1 GAAAGAAAGATGGATGG-T-G---GAGCCCTCTCACTTTTGTGAACCATATT-AA-GTAAAAAAG
* * * * *
1339751 ATAGGATGAAATGATG---GAGG
59 ACAAGATAAAATGAAGAAAGATG
* * * * *
1339771 GGAA-TAAGATTGATGGGTGGAGCCCGTCTCA-TTTATGTGAACCGTATTAAATTAAAAAAAAAG
1 GAAAGAAAGATGGAT-GGTGGAGCCC-TCTCACTTT-TGTGAACCATATT-AAGT---AAAAAAG
* * * *
1339834 ACATGATGAAACGACGGAAGAGAATGG
59 ACAAGATAAAATGA-AGAA-AG-AT-G
* ** * *
1339861 GAAAAAAAGATGGATAGGTGGAGCTATCTCACTTTTGTGAACCATATTAAGTTAAAAAA-ATAAA
1 GAAAGAAAGATGGAT-GGTGGAGCCCTCTCACTTTTGTGAACCATATTAAG-TAAAAAAGACAAG
* *
1339925 ATAAAATGATGAAGAAACATAA
64 AT-AAA--ATGAAGAAAGAT-G
* * * * * *
1339947 GAAAGAAAGATGGATGAGTGGAGCCATCTCTCTTATGTGAACCATATTATGTAAAAAAAAAATAG
1 GAAAGAAAGATGGATG-GTGGAGCCCTCTCACTTTTGTGAACCATATTAAGTAAAAAAGACA-A-
** * * *
1340012 GATGGAATGATGGAGCAGAAAG
63 GATAAAATGA-AGA-AAG-ATG
* * * * * * * *
1340034 GAAAGAAAGATAGATGGGTGGAGCCCTCACTCTTATGTAAACCATATAAAGTAAAAAAAAAAAAG
1 GAAAGAAAGATGGAT-GGTGGAGCCCTCTCACTTTTGTGAACCATATTAAGT-AAAAAAGACAAG
* * *
1340099 ATAGGATGGAATGATGGAGCAGAAAG
64 ATA--A---AATGA-AGA-AAG-ATG
* * * * * * * *
1340125 GAAAGAAAGATAGATGGGTGGAGCCCTCACTCTTATGTAAACCATATAAAGTAAAAAAAAAAAGA
1 GAAAGAAAGATGGAT-GGTGGAGCCCTCTCACTTTTGTGAACCATATTAAGTAAAAAAGACAAGA
*
1340190 TAGGATGAAATGACGAAGGAGAATAG
65 T---A--AAATGAAGAA--AG-AT-G
* * * * *
1340216 AAAGAAAAAAAGATGGATGGGTGGAGCTCTCTCACTTATGTAAACCATATTAAATAAAAAAAAAA
1 ---GAAAGAAAGATGGAT-GGTGGAGCCCTCTCACTTTTGTGAACCATATTAAGT----AAAAAA
* * * *
1340281 GACAGGATGAAATGACGGAAGAGAATAA
58 GACAAGATAAAATGA-AGAA-AG-AT-G
* ** ** * * *
1340309 GAAAGAAAGATAGATGGGTGGAGCTTTCT-TTTTTATGTGAACTATATTAAGTAAAAAAAAAATA
1 GAAAGAAAGATGGAT-GGTGGAGCCCTCTCACTTT-TGTGAACCATATTAAGTAAAAAAGACA-A
*
1340373 GGATGAAATAACT-AAGAAAAATAG
63 -GAT--AA-AA-TGAAGAAAGAT-G
* * * * *
1340397 GAAAGAAAGATGGATGGGTGGAGCCCTTTCTCTTATGTGAACCATATTAAGTAAAATAAAAAATA
1 GAAAGAAAGATGGAT-GGTGGAGCCCTCTCACTTTTGTGAACCATATTAAGT--AA-AAAAGACA
* * *
1340462 TAGGATGAAATGACAGAGGAGAATAA
62 -A-GATAAAATGA-AGA-AAG-AT-G
* * * *
1340488 GAAAGAAAGATAGATGGATGGAGCCCTCTC-GTTTATGTGAACCATATTAAATAAAAAAAACAAG
1 GAAAGAAAGATGGATGG-TGGAGCCCTCTCACTTT-TGTGAACCATATTAAGTAAAAAAGACAAG
* *
1340552 ACAAAATGGCAGAAGAGAATAG
64 ATAAAAT-GAAGAA-AG-AT-G
* *
1340574 GAAAGAAAGATGGATAGGAGGAGCCATCTCACTTTTGTGAACCATATTAAGT-AAAAA-A-AAGA
1 GAAAGAAAGATGGAT-GGTGGAGCCCTCTCACTTTTGTGAACCATATTAAGTAAAAAAGACAAGA
*
1340636 TAAAATTACGAAGAAACATAG
65 TAAAA-T--GAAGAAAGAT-G
* * * * *
1340657 GAAAGAAAGATGGATGAGTGGAGCCCTCTCTCTTATGTAAACCATATTCAGTAAAAAAAAAAGAT
1 GAAAGAAAGATGGATG-GTGGAGCCCTCTCACTTTTGTGAACCATATTAAGT----AAAAAAGAC
* *
1340722 AAGATGAAATGACGAAGGAGAATAG
61 AAGATAAAATGAAGAA--AG-AT-G
* * ** * ** *
1340747 GAAAAAAAAGATGAATGGGTGGAGCTTTCTCACTTATGTGAACTGTATTAAATAAAAAAAAAAGA
1 G-AAAGAAAGATGGAT-GGTGGAGCCCTCTCACTTTTGTGAACCATATTAAGT----AAAAAAGA
* *
1340812 CAAGATGAAATGACGGAAGAGAATAG
60 CAAGATAAAATGA-AGAA-AG-AT-G
* * * * *
1340838 GAAAGAAAGATAGATGGGTAGAGCTCTCTCA-TTTATGTG-ACCTATATTAAGTAAAAAAAAAGA
1 GAAAGAAAGATGGAT-GGTGGAGCCCTCTCACTTT-TGTGAACC-ATATTAAGT-AAAAAAGACA
* *
1340901 TAGAATGAAATGACAGAGAAAAATAG
62 -AG-ATAAAATG--A-AGAAAGAT-G
* * * * * *
1340927 GAATGAAAAATGGATGGGTGGAGCCCTTTC-TTTTATGTGAACCATATTAAGTAAAATAAAAAAT
1 GAAAGAAAGATGGAT-GGTGGAGCCCTCTCACTTT-TGTGAACCATATTAAGTAAAA-AAGACA-
* *
1340991 ATGGGATGAAATGATA-AAGGAGAATAA
62 A---GATAAAATGA-AGAA--AG-AT-G
* * * * * * *
1341018 GAAAGAAAGATGGATGGTTGGA-CCCTTTCTCTTATGTGAAACATATTAAATGAAAAAAAGATAG
1 GAAAGAAAGATGGATGG-TGGAGCCCTCTCACTTTTGTGAACCATATT-AA-GTAAAAAAGACAA
* *
1341082 GATGAAATGATG---GA-G
63 GATAAAATGAAGAAAGATG
* * * * *
1341097 GAGAA-TAAGATGGATGGGTGGAGCCCTCT-AATTTATGTGAATCATATTAAATAAAAAAAAGAT
1 GA-AAGAAAGATGGAT-GGTGGAGCCCTCTCACTTT-TGTGAACCATATTAAGT--AAAAAAGAC
*
1341160 AAGATAAAATGACGAAAGAGAATAG
61 AAGATAAAATGAAG-AA-AG-AT-G
* *
1341185 GAAAGAAAAATGGATAGGTGGAGCCCTCTTACTTTTGTGAACCATATTAAGTAAAAAA-A-AAGA
1 GAAAGAAAGATGGAT-GGTGGAGCCCTCTCACTTTTGTGAACCATATTAAGTAAAAAAGACAAGA
*
1341248 TAAAATTATGAAGAAACATAG
65 T-AAA--ATGAAGAAAGAT-G
* *
1341269 GAAAGAAAGATGGATGAGTGGAGCCCTCTCTA-TTATGTGAATCATATTAAGTAAAAAAAAAAAA
1 GAAAGAAAGATGGATG-GTGGAGCCCTCTC-ACTTTTGTGAACCATATTAAGT------AAAAAA
* * * *
1341333 GATAAGATGAAATGACGAAGCAGAATAT
58 GACAAGATAAAATGAAGAA--AG-AT-G
* *
1341361 GAAAGAAAGATGGATAGGTGGAGCCCTCTCTCTTATGT-AACCCATATTAAGTAAAAAA-A-AAG
1 GAAAGAAAGATGGAT-GGTGGAGCCCTCTCACTTTTGTGAA-CCATATTAAGTAAAAAAGACAAG
*
1341423 ATAGGAAGAAATGACGAAGGAGAATAG
64 AT----A-AAATGAAGAA--AG-AT-G
* * * * * *
1341450 AAAAAAAAAGGTGGATGGGTGGAG--CTCT--C--TTGTGAACCATATCAAATAAAAAAAAGATA
1 -GAAAGAAAGATGGAT-GGTGGAGCCCTCTCACTTTTGTGAACCATATTAAGT--AAAAAAGACA
* * * *
1341509 GGATGAAATGACGGAAGAGAATA
62 AGATAAAATGA-AGAA-AG-ATG
* ** ** * *
1341532 GAAAAAAAGATACATAGGTGGAGCTTTCTCA-TTTATGTGAACTATATTAAGTAAAAAA-A-ATG
1 GAAAGAAAGATGGAT-GGTGGAGCCCTCTCACTTT-TGTGAACCATATTAAGTAAAAAAGACAAG
* * * * *
1341594 A-AATGACGGAGAAAAATA
64 ATAA-AATGAAGAAAGATG
* * * * *
1341612 GAAATGAAAGATGGATGGGTGGAGCCCTTTCTCTTATGTGAACCATATTAAGTAAATTAAAAAAT
1 GAAA-GAAAGATGGAT-GGTGGAGCCCTCTCACTTTTGTGAACCATATTAAGT-AA--AAAAGAC
* * *
1341677 ATAGTATGAAATGACAGAGGAGAATAA
61 A-AG-ATAAAATGA-AGA-AAG-AT-G
* * * * * * * *
1341704 GAAAGAAAGTTGGATGGATGGAGCCCTTTCTCTTATGTGAACCATATCAAATGAAAAAATGATAG
1 GAAAGAAAGATGGATGG-TGGAGCCCTCTCACTTTTGTGAACCATATTAAGT-AAAAAA-GACAA
* * *
1341769 GATGAAATGATG-AAGA-A
63 GATAAAATGAAGAAAGATG
* * * *
1341786 G-AA-TAAGATGGATGGGTGGAACCCTCTCA-TTTATGTGAATCATATTAAGTAAAAAAAGACAG
1 GAAAGAAAGATGGAT-GGTGGAGCCCTCTCACTTT-TGTGAACCATATTAAGT-AAAAAAGACAA
*
1341848 GATGAAATGACAGAAGAGAATAG
63 GATAAAATGA-AGAA-AG-AT-G
** *
1341871 GAAAGAAAGATGGATAGGTGGAGCTTTTTCACTTTTGTG-ACCATATTAAGTAAAAAA-A-AAGA
1 GAAAGAAAGATGGAT-GGTGGAGCCCTCTCACTTTTGTGAACCATATTAAGTAAAAAAGACAAGA
* *
1341933 TAAAATTACAAAGAAACATAG
65 TAAAA-T--GAAGAAAGAT-G
* ** * ** * * *
1341954 GAAAGAAAAATGGATGAGTATAGCTCTCTTTCTTATGTGAACCATATTAAGTAAAAAAAGATAGG
1 GAAAGAAAGATGGATG-GTGGAGCCCTCTCACTTTTGTGAACCATATTAAGT-AAAAAAGACAAG
* * *
1342019 ATGAAATGACGGAGCAGAATAG
64 ATAAAATGA-AGA-AAG-AT-G
* * * * * *
1342041 AAAAAAAAGATGGATGGGTGGAGCCCTCTCTCTTATGTGAACCATATTAAGCAAAAAAAAAACAT
1 GAAAGAAAGATGGAT-GGTGGAGCCCTCTCACTTTTGTGAACCATATTAAG--TAAAAAAGAC--
* *
1342106 AAGATGAAATGATAGAGGAGAATAG
61 AAGATAAAATGA-AGA-AAG-AT-G
* * ** * * * *
1342131 GAAAAAAAGATGGATTGGCGGAGCTTTCTCTCTTATGTGAACCATATTAAATAAAAAACTA-ATA
1 GAAAGAAAGATGGA-TGGTGGAGCCCTCTCACTTTTGTGAACCATATTAAGTAAAAAA-GACA-A
*
1342195 GGATAAAATGATAGAGAAAAATAG
63 -GATAAAATG--A-AGAAAGAT-G
* * * *
1342219 GAAAAAAAGACCGG-TGGGTGGAG-CCTCTCA-TTTAAGTGAACCATATTAAATAAAAAAAAAGA
1 GAAAGAAAGA-TGGAT-GGTGGAGCCCTCTCACTTT-TGTGAACCATATTAAGT---AAAAAAGA
* * *
1342281 CAGGATGAAATGATGGAAGAGAATAG
60 CAAGATAAAATGA-AGAA-AG-AT-G
* * * * * *
1342307 GAAAGAAAGATGGATGGGTGGAGCCATCTCTCTTATGTGAACCATTTTAAGTAAAAAAAAGATAG
1 GAAAGAAAGATGGAT-GGTGGAGCCCTCTCACTTTTGTGAACCATATTAAGT--AAAAAAGACAA
* * *
1342372 GATGAAATGACAGAGAAAATAA
63 GATAAAATGA-AGA-AAGAT-G
* * *
1342394 GAAAGAAAGATGGATGGGTGGAGCCCTCTCTCTTATATGAACCATATTAAGT
1 GAAAGAAAGATGGAT-GGTGGAGCCCTCTCACTTTTGTGAACCATATTAAGT
1342446 TTAAGAAAAA
Statistics
Matches: 6386, Mismatches: 1112, Indels: 1487
0.71 0.12 0.17
Matches are distributed among these distances:
72 4 0.00
73 2 0.00
75 5 0.00
76 7 0.00
77 22 0.00
78 88 0.01
79 127 0.02
80 270 0.04
81 210 0.03
82 247 0.04
83 322 0.05
84 314 0.05
85 320 0.05
86 448 0.07
87 468 0.07
88 768 0.12
89 550 0.09
90 603 0.09
91 780 0.12
92 420 0.07
93 168 0.03
94 106 0.02
95 83 0.01
96 37 0.01
97 3 0.00
98 11 0.00
99 3 0.00
ACGTcount: A:0.46, C:0.09, G:0.23, T:0.22
Consensus pattern (81 bp):
GAAAGAAAGATGGATGGTGGAGCCCTCTCACTTTTGTGAACCATATTAAGTAAAAAAGACAAGAT
AAAATGAAGAAAGATG
Found at i:1337030 original size:81 final size:79
Alignment explanation
Indices: 1336889--1337037 Score: 210
Period size: 79 Copynumber: 1.9 Consensus size: 79
1336879 ATAAGAAAGA
* * *
1336889 AAGATGGATGGATGGAGCCCTTTCTCTTATGTGAACCATATTAAATGAAAAAAGATATGATGAAA
1 AAGATGGATGGATGGAGCCCTCTCTCTTATGAGAACCATATTAAATGAAAAAAGACATGATGAAA
1336954 TGATAGGGGAGAAT
66 TGATAGGGGAGAAT
* * *
1336968 AAGATGGATGGGTGGAGTCCTCTCAT-TTATGAGAACCATATTGAATAGAAAAAAAGACATGATG
1 AAGATGGATGGATGGAGCCCTCTC-TCTTATGAGAACCATATTAAAT-G-AAAAAAGACATGATG
1337032 AAATGA
63 AAATGA
1337038 CGGAAGAAAA
Statistics
Matches: 61, Mismatches: 6, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
79 39 0.64
80 2 0.03
81 20 0.33
ACGTcount: A:0.40, C:0.09, G:0.25, T:0.26
Consensus pattern (79 bp):
AAGATGGATGGATGGAGCCCTCTCTCTTATGAGAACCATATTAAATGAAAAAAGACATGATGAAA
TGATAGGGGAGAAT
Found at i:1342881 original size:16 final size:15
Alignment explanation
Indices: 1342836--1342884 Score: 55
Period size: 16 Copynumber: 3.1 Consensus size: 15
1342826 TTAAATGTGT
1342836 TAAAATTTATATAAAA
1 TAAAATTTATAT-AAA
*
1342852 TAAATTATTA-ATAAA
1 TAAAAT-TTATATAAA
1342867 TCAAAATTTATATAAA
1 T-AAAATTTATATAAA
1342883 TA
1 TA
1342885 TATAATAATA
Statistics
Matches: 28, Mismatches: 2, Indels: 7
0.76 0.05 0.19
Matches are distributed among these distances:
15 8 0.29
16 17 0.61
17 3 0.11
ACGTcount: A:0.59, C:0.02, G:0.00, T:0.39
Consensus pattern (15 bp):
TAAAATTTATATAAA
Found at i:1343151 original size:20 final size:20
Alignment explanation
Indices: 1343110--1343152 Score: 52
Period size: 20 Copynumber: 2.1 Consensus size: 20
1343100 CGAATATGAA
* *
1343110 AAATAATACAAATATAATAT
1 AAATAATACAAATAAAAAAT
1343130 AAATACATA-AAATAAAAAAT
1 AAATA-ATACAAATAAAAAAT
1343150 AAA
1 AAA
1343153 AGATGAAGAT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
20 17 0.85
21 3 0.15
ACGTcount: A:0.72, C:0.05, G:0.00, T:0.23
Consensus pattern (20 bp):
AAATAATACAAATAAAAAAT
Found at i:1343610 original size:3 final size:3
Alignment explanation
Indices: 1343604--1343633 Score: 60
Period size: 3 Copynumber: 10.0 Consensus size: 3
1343594 TTTATTATTT
1343604 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1343634 TCAATGTTGT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:1345400 original size:21 final size:18
Alignment explanation
Indices: 1345363--1345401 Score: 51
Period size: 21 Copynumber: 2.0 Consensus size: 18
1345353 GATTAATTAA
1345363 ATTAAAATAATTTTAAAT
1 ATTAAAATAATTTTAAAT
1345381 ATTAAAGATATATATTTAAAT
1 ATTAAA-ATA-AT-TTTAAAT
1345402 TCGATCATAT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
18 6 0.33
19 3 0.17
20 2 0.11
21 7 0.39
ACGTcount: A:0.54, C:0.00, G:0.03, T:0.44
Consensus pattern (18 bp):
ATTAAAATAATTTTAAAT
Found at i:1345760 original size:26 final size:27
Alignment explanation
Indices: 1345703--1345774 Score: 101
Period size: 26 Copynumber: 2.7 Consensus size: 27
1345693 AAACCACCTA
* *
1345703 TTGTTTGTCAAAAATTGTGGTTACTTT
1 TTGTTTGTCAAAAATGGTGATTACTTT
* *
1345730 GTGTTTGTCAAAAATGGTGATT-TTTT
1 TTGTTTGTCAAAAATGGTGATTACTTT
1345756 TTGTTTGTCAAAAATGGTG
1 TTGTTTGTCAAAAATGGTG
1345775 GCATGTTATT
Statistics
Matches: 40, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
26 21 0.52
27 19 0.47
ACGTcount: A:0.24, C:0.06, G:0.22, T:0.49
Consensus pattern (27 bp):
TTGTTTGTCAAAAATGGTGATTACTTT
Found at i:1345786 original size:28 final size:26
Alignment explanation
Indices: 1345703--1345787 Score: 84
Period size: 27 Copynumber: 3.2 Consensus size: 26
1345693 AAACCACCTA
*
1345703 TTGTTTGTCAAAAATTGTG--GTTACTT
1 TTGTTTGTCAAAAATGGTGATGTTA--T
* *
1345729 TGTGTTTGTCAAAAATGGTGATTTTTT
1 T-TGTTTGTCAAAAATGGTGATGTTAT
1345756 TTGTTTGTCAAAAATGGTGGCATGTTAT
1 TTGTTTGTCAAAAATGGT-G-ATGTTAT
1345784 TTGT
1 TTGT
1345788 CAAAATTTGT
Statistics
Matches: 49, Mismatches: 5, Indels: 8
0.79 0.08 0.13
Matches are distributed among these distances:
26 18 0.37
27 20 0.41
28 9 0.18
29 2 0.04
ACGTcount: A:0.22, C:0.06, G:0.22, T:0.49
Consensus pattern (26 bp):
TTGTTTGTCAAAAATGGTGATGTTAT
Found at i:1345876 original size:13 final size:13
Alignment explanation
Indices: 1345858--1345898 Score: 66
Period size: 13 Copynumber: 3.2 Consensus size: 13
1345848 CCCTCCTCCT
*
1345858 TCTCAAGTATCCC
1 TCTCAAGCATCCC
1345871 TCTCAAGCAT-CC
1 TCTCAAGCATCCC
1345883 TCTCAAGCATCCC
1 TCTCAAGCATCCC
1345896 TCT
1 TCT
1345899 TCAATTCTTT
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
12 12 0.46
13 14 0.54
ACGTcount: A:0.22, C:0.41, G:0.07, T:0.29
Consensus pattern (13 bp):
TCTCAAGCATCCC
Found at i:1345886 original size:12 final size:12
Alignment explanation
Indices: 1345858--1345894 Score: 56
Period size: 12 Copynumber: 3.0 Consensus size: 12
1345848 CCCTCCTCCT
*
1345858 TCTCAAGTATCCC
1 TCTCAAGCAT-CC
1345871 TCTCAAGCATCC
1 TCTCAAGCATCC
1345883 TCTCAAGCATCC
1 TCTCAAGCATCC
1345895 CTCTTCAATT
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
12 14 0.61
13 9 0.39
ACGTcount: A:0.24, C:0.41, G:0.08, T:0.27
Consensus pattern (12 bp):
TCTCAAGCATCC
Found at i:1350299 original size:27 final size:25
Alignment explanation
Indices: 1350267--1350356 Score: 101
Period size: 27 Copynumber: 3.5 Consensus size: 25
1350257 AAACCACTCA
*
1350267 TTGTTTGTCAAAAATTGTGGTTACTT
1 TTGTTTGTCAAAAATGGTGGTTA-TT
*
1350293 TGTGTTTGTCAAAAATGGTGGTTTTTT
1 T-TGTTTGTCAAAAATGGTGG-TTATT
* * *
1350320 TTGTTTGTAAAAAATGGTGG-CATG
1 TTGTTTGTCAAAAATGGTGGTTATT
1350344 TTGTTTGTCAAAA
1 TTGTTTGTCAAAA
1350357 TTTGTGGCTA
Statistics
Matches: 55, Mismatches: 7, Indels: 6
0.81 0.10 0.09
Matches are distributed among these distances:
24 13 0.24
26 19 0.35
27 21 0.38
28 2 0.04
ACGTcount: A:0.24, C:0.06, G:0.23, T:0.47
Consensus pattern (25 bp):
TTGTTTGTCAAAAATGGTGGTTATT
Found at i:1350324 original size:26 final size:27
Alignment explanation
Indices: 1350267--1350339 Score: 103
Period size: 26 Copynumber: 2.7 Consensus size: 27
1350257 AAACCACTCA
*
1350267 TTGTTTGTCAAAAATTGTGGTTACTTT
1 TTGTTTGTCAAAAATGGTGGTTACTTT
* *
1350294 GTGTTTGTCAAAAATGGTGGTT-TTTT
1 TTGTTTGTCAAAAATGGTGGTTACTTT
*
1350320 TTGTTTGTAAAAAATGGTGG
1 TTGTTTGTCAAAAATGGTGG
1350340 CATGTTGTTT
Statistics
Matches: 41, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
26 21 0.51
27 20 0.49
ACGTcount: A:0.23, C:0.04, G:0.25, T:0.48
Consensus pattern (27 bp):
TTGTTTGTCAAAAATGGTGGTTACTTT
Found at i:1350450 original size:12 final size:13
Alignment explanation
Indices: 1350418--1350462 Score: 65
Period size: 13 Copynumber: 3.5 Consensus size: 13
1350408 GGCTCCCTCC
1350418 TCCCTCTCAAGTA
1 TCCCTCTCAAGTA
1350431 TCCCTCTCAAGTA
1 TCCCTCTCAAGTA
**
1350444 T-CCTCTCTTGTA
1 TCCCTCTCAAGTA
1350456 TCCCTCT
1 TCCCTCT
1350463 TCAATTCTTT
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
12 10 0.34
13 19 0.66
ACGTcount: A:0.16, C:0.40, G:0.07, T:0.38
Consensus pattern (13 bp):
TCCCTCTCAAGTA
Found at i:1351078 original size:2 final size:2
Alignment explanation
Indices: 1351073--1351100 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
1351063 ATATTCTCCA
1351073 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1351101 GAATAAATTT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:1351578 original size:2 final size:2
Alignment explanation
Indices: 1351534--1351560 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
1351524 TCCTAATTGC
1351534 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1351561 ATCACTTGCT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:1352115 original size:23 final size:24
Alignment explanation
Indices: 1352089--1352135 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 24
1352079 TAGGTATTAA
* *
1352089 AATTTATAATTAT-ATTTTATTTT
1 AATTAATAATTATCAATTTATTTT
*
1352112 AATTAATATTTATCAATTTATTTT
1 AATTAATAATTATCAATTTATTTT
1352136 TGAAATTAAA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
23 11 0.55
24 9 0.45
ACGTcount: A:0.36, C:0.02, G:0.00, T:0.62
Consensus pattern (24 bp):
AATTAATAATTATCAATTTATTTT
Found at i:1352124 original size:16 final size:17
Alignment explanation
Indices: 1352090--1352122 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
1352080 AGGTATTAAA
1352090 ATTTATAATTATATTTT
1 ATTTATAATTATATTTT
1352107 ATTT-TAATTAATATTT
1 ATTTATAATT-ATATTT
1352123 ATCAATTTAT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 5 0.33
17 10 0.67
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (17 bp):
ATTTATAATTATATTTT
Found at i:1356356 original size:19 final size:19
Alignment explanation
Indices: 1356320--1356358 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
1356310 TATTCATGTA
* **
1356320 TTTATATTATATTGTATTT
1 TTTATACTATATAATATTT
1356339 TTTATACTATATAATATTT
1 TTTATACTATATAATATTT
1356358 T
1 T
1356359 AATTTGTTTT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.31, C:0.03, G:0.03, T:0.64
Consensus pattern (19 bp):
TTTATACTATATAATATTT
Found at i:1357275 original size:2 final size:2
Alignment explanation
Indices: 1357268--1357293 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
1357258 TTGATTTAGA
1357268 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
1357294 TACCTTAAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:1359181 original size:2 final size:2
Alignment explanation
Indices: 1359176--1359202 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
1359166 TTCGTGTGTG
1359176 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1359203 TAAATAGAAG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:1360328 original size:39 final size:39
Alignment explanation
Indices: 1360279--1360377 Score: 112
Period size: 39 Copynumber: 2.5 Consensus size: 39
1360269 CATTGTCAAG
*
1360279 ATTCTAATAAAAAA-TCGATGCATTAATCATATATTTTAA
1 ATTCTAATAAAAAATTC-ATGCATTAATCACATATTTTAA
* * *
1360318 ATTTCT-ATAAAAAATTCATGCTTTAATTACATCTTTTAA
1 A-TTCTAATAAAAAATTCATGCATTAATCACATATTTTAA
*
1360357 ATTCTCATAAAAAAATTCATG
1 ATTCTAAT-AAAAAATTCATG
1360378 ATCACATCCG
Statistics
Matches: 52, Mismatches: 4, Indels: 7
0.83 0.06 0.11
Matches are distributed among these distances:
38 4 0.08
39 30 0.58
40 18 0.35
ACGTcount: A:0.43, C:0.12, G:0.04, T:0.40
Consensus pattern (39 bp):
ATTCTAATAAAAAATTCATGCATTAATCACATATTTTAA
Found at i:1361814 original size:28 final size:27
Alignment explanation
Indices: 1361759--1361829 Score: 99
Period size: 27 Copynumber: 2.6 Consensus size: 27
1361749 GCCACCCATA
1361759 TGTTTGTCAAAAATGGTGGTTATTTTG
1 TGTTTGTCAAAAATGGTGGTTATTTTG
1361786 TGTTTGTCAAAAATGGTGGTT-TCCTTTG
1 TGTTTGTCAAAAATGGTGGTTAT--TTTG
* *
1361814 TATTTGTCAAATATGG
1 TGTTTGTCAAAAATGG
1361830 AGGCTTGTTT
Statistics
Matches: 40, Mismatches: 2, Indels: 3
0.89 0.04 0.07
Matches are distributed among these distances:
26 1 0.03
27 21 0.52
28 18 0.45
ACGTcount: A:0.23, C:0.07, G:0.24, T:0.46
Consensus pattern (27 bp):
TGTTTGTCAAAAATGGTGGTTATTTTG
Found at i:1361931 original size:20 final size:20
Alignment explanation
Indices: 1361906--1361951 Score: 65
Period size: 20 Copynumber: 2.3 Consensus size: 20
1361896 AAATAGAGGC
*
1361906 TCCCTCCTCCCTCTCAAGTA
1 TCCCTCATCCCTCTCAAGTA
**
1361926 TCCCTCATCCCTCTCTTGTA
1 TCCCTCATCCCTCTCAAGTA
1361946 TCCCTC
1 TCCCTC
1361952 TTCAATTCTT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.11, C:0.50, G:0.04, T:0.35
Consensus pattern (20 bp):
TCCCTCATCCCTCTCAAGTA
Found at i:1366387 original size:28 final size:27
Alignment explanation
Indices: 1366332--1366402 Score: 90
Period size: 27 Copynumber: 2.6 Consensus size: 27
1366322 GCCACCCATA
*
1366332 TGTTTGTCAAAAATGGTGGTTATTTTG
1 TGTTTGTCAAAAATGGTAGTTATTTTG
1366359 TGTTTGTCAAAAATGGTAGTT-TCCTTTG
1 TGTTTGTCAAAAATGGTAGTTAT--TTTG
* *
1366387 TATTTGTCAAATATGG
1 TGTTTGTCAAAAATGG
1366403 AGGCTTGTTT
Statistics
Matches: 39, Mismatches: 3, Indels: 3
0.87 0.07 0.07
Matches are distributed among these distances:
26 1 0.03
27 20 0.51
28 18 0.46
ACGTcount: A:0.24, C:0.07, G:0.23, T:0.46
Consensus pattern (27 bp):
TGTTTGTCAAAAATGGTAGTTATTTTG
Found at i:1367572 original size:13 final size:13
Alignment explanation
Indices: 1367554--1367579 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
1367544 TTTATTTGTG
1367554 AAAAGATTTAATT
1 AAAAGATTTAATT
1367567 AAAAGATTTAATT
1 AAAAGATTTAATT
1367580 TTTAAATTAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.54, C:0.00, G:0.08, T:0.38
Consensus pattern (13 bp):
AAAAGATTTAATT
Found at i:1368490 original size:11 final size:11
Alignment explanation
Indices: 1368464--1368499 Score: 51
Period size: 11 Copynumber: 3.5 Consensus size: 11
1368454 GCATAATTAT
1368464 AATA-AATA-A
1 AATATAATATA
1368473 AAT-TAATATA
1 AATATAATATA
1368483 AATATAATATA
1 AATATAATATA
1368494 AATATA
1 AATATA
1368500 TTAATTATTA
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
9 7 0.29
10 4 0.17
11 13 0.54
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (11 bp):
AATATAATATA
Found at i:1368519 original size:27 final size:26
Alignment explanation
Indices: 1368441--1368519 Score: 70
Period size: 27 Copynumber: 2.8 Consensus size: 26
1368431 ATTAAAGGAA
*
1368441 AAAATTAATTTAAGCATAATTATAATAAAT
1 AAAATTAATATAA--AT-ATTAT-ATAAAT
*
1368471 AAAATTAATATAAATATAATATAAAT
1 AAAATTAATATAAATATTATATAAAT
*
1368497 -ATATTAATTATTAAATATTATAT
1 AAAATTAA-TA-TAAATATTATAT
1368520 TACTTATATA
Statistics
Matches: 43, Mismatches: 4, Indels: 7
0.80 0.07 0.13
Matches are distributed among these distances:
25 6 0.14
26 8 0.19
27 15 0.35
28 2 0.05
30 12 0.28
ACGTcount: A:0.57, C:0.01, G:0.01, T:0.41
Consensus pattern (26 bp):
AAAATTAATATAAATATTATATAAAT
Found at i:1368646 original size:22 final size:22
Alignment explanation
Indices: 1368619--1368677 Score: 59
Period size: 22 Copynumber: 2.6 Consensus size: 22
1368609 TATTTATGTA
1368619 AATATATAATATAT-TAAAGATG
1 AATATA-AATATATATAAAGATG
* *
1368641 AATATAAAAAATAATATAAATATG
1 AATAT-AAATAT-ATATAAAGATG
1368665 -ATATAAATATATA
1 AATATAAATATATA
1368678 AAATAAAAAT
Statistics
Matches: 31, Mismatches: 3, Indels: 7
0.76 0.07 0.17
Matches are distributed among these distances:
21 3 0.10
22 14 0.45
23 7 0.23
24 7 0.23
ACGTcount: A:0.61, C:0.00, G:0.05, T:0.34
Consensus pattern (22 bp):
AATATAAATATATATAAAGATG
Found at i:1368678 original size:24 final size:25
Alignment explanation
Indices: 1368617--1368684 Score: 68
Period size: 24 Copynumber: 2.7 Consensus size: 25
1368607 TATATTTATG
1368617 TAAATATATAATATATTAAAGATGAATA
1 TAAATATAT-A-ATA-TAAAGATGAATA
* *
1368645 TAAA-AAATAATATAAATATG-ATA
1 TAAATATATAATATAAAGATGAATA
*
1368668 TAAATATATAAAATAAA
1 TAAATATATAATATAAA
1368685 AATAAAATAA
Statistics
Matches: 35, Mismatches: 4, Indels: 6
0.78 0.09 0.13
Matches are distributed among these distances:
23 7 0.20
24 17 0.49
25 3 0.09
26 1 0.03
27 3 0.09
28 4 0.11
ACGTcount: A:0.63, C:0.00, G:0.04, T:0.32
Consensus pattern (25 bp):
TAAATATATAATATAAAGATGAATA
Found at i:1368780 original size:7 final size:7
Alignment explanation
Indices: 1368768--1368798 Score: 62
Period size: 7 Copynumber: 4.4 Consensus size: 7
1368758 CTTACTTTTA
1368768 AAAAAAT
1 AAAAAAT
1368775 AAAAAAT
1 AAAAAAT
1368782 AAAAAAT
1 AAAAAAT
1368789 AAAAAAT
1 AAAAAAT
1368796 AAA
1 AAA
1368799 TTTTGTCAAG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 24 1.00
ACGTcount: A:0.87, C:0.00, G:0.00, T:0.13
Consensus pattern (7 bp):
AAAAAAT
Found at i:1370189 original size:18 final size:19
Alignment explanation
Indices: 1370157--1370193 Score: 58
Period size: 18 Copynumber: 2.0 Consensus size: 19
1370147 TGATTATAAT
*
1370157 ATATAAAATATATAAATTA
1 ATATAAAATAGATAAATTA
1370176 ATAT-AAATAGATAAATTA
1 ATATAAAATAGATAAATTA
1370194 TTGATTTTAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 13 0.76
19 4 0.24
ACGTcount: A:0.62, C:0.00, G:0.03, T:0.35
Consensus pattern (19 bp):
ATATAAAATAGATAAATTA
Found at i:1378212 original size:140 final size:139
Alignment explanation
Indices: 1374140--1378199 Score: 6396
Period size: 140 Copynumber: 29.0 Consensus size: 139
1374130 GATTTTTTAA
* * * * *
1374140 AAATATTTTTATTATGTATTTACTTACTTATATTCTCCTCCCAAACAATAGCTTGAAATTAAAAG
1 AAATTTTTTTATTATGTATTTATTTGCTTACATTTTCCTCCCAAACAATAGCTTGAAATTAAAAG
* * *
1374205 GAAATAGTCATATTAATAAAATATTAACTTTAACTTTAAAACCGTAATATAAACTTCTCTCATTG
66 GAAATAGTCATATTAATAAAATATTAACTCTAACTTTAAAACCCTAATATAAACTTTTCTCATTG
1374270 TGCCTTTTTT
131 TG-CTTTTTT
* * *
1374280 TAATTTTTTTATTATGTACTTATTTG-TTGACATTTTCCTCTCAAACAATAGCTTGAAATTAAAA
1 AAATTTTTTTATTATGTATTTATTTGCTT-ACATTTTCCTCCCAAACAATAGCTTGAAATTAAAA
* * *
1374344 AGAAATCGTCATATTAAAAAAATATTAACTCTAACTTTAAAACCCTAATATAAACTTTTCTCATT
65 GGAAATAGTCATATTAATAAAATATTAACTCTAACTTTAAAACCCTAATATAAACTTTTCTCATT
* *
1374409 TTG-TTTATTA
130 GTGCTTT-TTT
* * * *
1374419 AAATTTTTTTTGTTATGTATTTATTTGCTGAAATTTTCCTCCCAAACAATAGCATGAAATTAAAA
1 AAA-TTTTTTTATTATGTATTTATTTGCTTACATTTTCCTCCCAAACAATAGCTTGAAATTAAAA
* *
1374484 GGAAATAGTCATATCAATAAAATATTAACTCTAACTTTAAAACCCTAATAAAAACTTTTCTCATT
65 GGAAATAGTCATATTAATAAAATATTAACTCTAACTTTAAAACCCTAATATAAACTTTTCTCATT
1374549 GTGCTTTTTT
130 GTGCTTTTTT
* * *
1374559 AAATTTTTTTTATTATTTATTTATTTGCTGACATTTTCCTCCCAAACAATAACTTGAAATTAAAA
1 AAA-TTTTTTTATTATGTATTTATTTGCTTACATTTTCCTCCCAAACAATAGCTTGAAATTAAAA
* * *
1374624 GGAAATAGTCATAGTAATAAAATGTTAACTCTAACTTTAAAATCCTAATATAAACTTTTCTCATT
65 GGAAATAGTCATATTAATAAAATATTAACTCTAACTTTAAAACCCTAATATAAACTTTTCTCATT
*
1374689 TTGCTTTTTTT
130 GTGC-TTTTTT
1374700 AAATTTTTTTTATTATGTATTTATTTGCTTACATTTTCCTCCCAAACAATAGCTTGAAATTAAAA
1 AAA-TTTTTTTATTATGTATTTATTTGCTTACATTTTCCTCCCAAACAATAGCTTGAAATTAAAA
* *
1374765 GGAAATCGTCATATTAATAAAATATTAACTCTAACTTTAAAACCCTAATATAAACTTTTCTAATT
65 GGAAATAGTCATATTAATAAAATATTAACTCTAACTTTAAAACCCTAATATAAACTTTTCTCATT
*
1374830 TTG-TTTTTT
130 GTGCTTTTTT
* *
1374839 AAAATTTTTTTTGTTATGTATTTATTTGCTGACATTTTCCTCCCAAACAATAGCTTGAAATTAAA
1 -AAA-TTTTTTTATTATGTATTTATTTGCTTACATTTTCCTCCCAAACAATAGCTTGAAATTAAA
* *
1374904 AGGAAATAGTCATATTAATAAAATATTAACTCTAACTTTAAAACCCTAATAAAAACTTTTTTCAT
64 AGGAAATAGTCATATTAATAAAATATTAACTCTAACTTTAAAACCCTAATATAAACTTTTCTCAT
1374969 TGTGCTTTTTT
129 TGTGCTTTTTT
* * *
1374980 AAAATTTTTTATTATGTATTTATTTGCTGACATTTTCCTCTCAAACAATAGCTTGAAATTAAAAG
1 AAATTTTTTTATTATGTATTTATTTGCTTACATTTTCCTCCCAAACAATAGCTTGAAATTAAAAG
*
1375045 GAAATAGTTATATTAATAAAATATTAACTCTAACTTTAAAACCCTAATATAAACTTTTCTCATTG
66 GAAATAGTCATATTAATAAAATATTAACTCTAACTTTAAAACCCTAATATAAACTTTTCTCATTG
*
1375110 TTCTTTTTTT
131 TGC-TTTTTT
* * *
1375120 AAATTTTTTTACTATGTATTTATTTGGTTACATTTTCCTCCCAAATAATAGCTTGAAATTAAAAG
1 AAATTTTTTTATTATGTATTTATTTGCTTACATTTTCCTCCCAAACAATAGCTTGAAATTAAAAG
* *
1375185 GAAATAATCATATTAATAAAATATTAACTCTATCTTTAAAACCCTAATATAAACTTTTCTCATTG
66 GAAATAGTCATATTAATAAAATATTAACTCTAACTTTAAAACCCTAATATAAACTTTTCTCATTG
* *
1375250 TTCTTTTAT
131 TGCTTTTTT
* * *
1375259 AAATTTTTTTATTATGTCTTTATTTGCTTCCATTTTCCACCCAAACAATAGCTTGAAATTAAAAG
1 AAATTTTTTTATTATGTATTTATTTGCTTACATTTTCCTCCCAAACAATAGCTTGAAATTAAAAG
1375324 GAAATAGTCATATTAATAAAATATTAACTCTAACTTTAAAACCCTAATATAAACTTTTCTCATTG
66 GAAATAGTCATATTAATAAAATATTAACTCTAACTTTAAAACCCTAATATAAACTTTTCTCATTG
1375389 TGCTTTTTT
131 TGCTTTTTT
***
1375398 AAAAAAATTTTATTATGTATTTATTTGCTTACATTTTCCTCCCAAACAATAGCTTGAAATTAAAA
1 -AAATTTTTTTATTATGTATTTATTTGCTTACATTTTCCTCCCAAACAATAGCTTGAAATTAAAA
*
1375463 GGAAATAGTCATATTAATAAAATATTAACTCTTAACTTTAAAACTCTAATATAAACTTTTCTCAT
65 GGAAATAGTCATATTAATAAAATATTAACTC-TAACTTTAAAACCCTAATATAAACTTTTCTCAT
1375528 TGTGCTTTTTT
129 TGTGCTTTTTT
* *
1375539 AAAATTTTTTATTATGTATTTATTTGCTGACATTTTCCTCCCAAACAATAGCTTGAAATTAAAAG
1 AAATTTTTTTATTATGTATTTATTTGCTTACATTTTCCTCCCAAACAATAGCTTGAAATTAAAAG
* *
1375604 GAAATACTCATATTAATAAAATATTAACTCTAACTTTAAAACCCTAATATAAACTTTTCTCATTT
66 GAAATAGTCATATTAATAAAATATTAACTCTAACTTTAAAACCCTAATATAAACTTTTCTCATTG
1375669 TGCTTTTTT
131 TGCTTTTTT
* *
1375678 AAAATTTTTTTATTATGTATTTATTTGCTTATATTCTCCTCCCAAACAATAGCTTGAAATTAAAA
1 -AAATTTTTTTATTATGTATTTATTTGCTTACATTTTCCTCCCAAACAATAGCTTGAAATTAAAA
* * *
1375743 GGAAATAGTCATATTAATAAAATATTAACTTTAACTTTAAAACCGTAATATAAACTTCTCTCATT
65 GGAAATAGTCATATTAATAAAATATTAACTCTAACTTTAAAACCCTAATATAAACTTTTCTCATT
1375808 GTGCCTTTTTT
130 GTG-CTTTTTT
* *
1375819 AAATTTTTTTATTATGTACTTATTTG-TTGACATTTTCCTCTCAAACAAT-GACTTGAAATTAAA
1 AAATTTTTTTATTATGTATTTATTTGCTT-ACATTTTCCTCCCAAACAATAG-CTTGAAATTAAA
* *
1375882 AAGAAATCGTCATATTAATAAAATATTAACTCTAACTTTAAAACCCTAATATAAACTTTTCTCAT
64 AGGAAATAGTCATATTAATAAAATATTAACTCTAACTTTAAAACCCTAATATAAACTTTTCTCAT
*
1375947 TTTG-TTTTTT
129 TGTGCTTTTTT
* * *
1375957 AAAATTTTTTTTGTTATGTATTTATTT-ATTGAAATTTTCCTCCCAAACAATAGCTTGAAATTAA
1 -AAA-TTTTTTTATTATGTATTTATTTGCTT-ACATTTTCCTCCCAAACAATAGCTTGAAATTAA
*
1376021 AAGGAAATAGTCATATTAATAAAATATTAACTCTTAACTTTAAAACTCTAATATAAACTTTTCTC
63 AAGGAAATAGTCATATTAATAAAATATTAACTC-TAACTTTAAAACCCTAATATAAACTTTTCTC
1376086 ATTGTGCTTTTTT
127 ATTGTGCTTTTTT
* * * *
1376099 AAAATTTTTTTATTATGTATTTATTTTCTGACATTTTCTTTCCAAACAATAGCTTGAAATTAAAA
1 -AAATTTTTTTATTATGTATTTATTTGCTTACATTTTCCTCCCAAACAATAGCTTGAAATTAAAA
1376164 GGAAATAGTCATATTAATAAAATATTAACTCTAACTTTAAAACCCTAATATAAACTTTTCTCATT
65 GGAAATAGTCATATTAATAAAATATTAACTCTAACTTTAAAACCCTAATATAAACTTTTCTCATT
*
1376229 ATGCTTTTTTT
130 GTGC-TTTTTT
* * *
1376240 AAATTCTTTTATTATGTATTTATTTGCTTAAATTTTCCTCCCAAACAATAGCTTGCAATTAAAAG
1 AAATTTTTTTATTATGTATTTATTTGCTTACATTTTCCTCCCAAACAATAGCTTGAAATTAAAAG
* *
1376305 GAAATAGTCATATTAATAAAATATTAACTCTAACTTTAAAACCCAAATATAAACTTTTTTCATTG
66 GAAATAGTCATATTAATAAAATATTAACTCTAACTTTAAAACCCTAATATAAACTTTTCTCATTG
1376370 TGCTTTTTTTTT
131 TGC---TTTTTT
* * *
1376382 TAATTTTTTTATTATGTATTTATTTGCTGACATTTTCCTCTCAAACAATAGCTTGAAATTAAAAG
1 AAATTTTTTTATTATGTATTTATTTGCTTACATTTTCCTCCCAAACAATAGCTTGAAATTAAAAG
* *
1376447 GAAATAGTCATATTAATAAAATATTAACTCTAACTTTAAAACCCTAAGATAAACTTTTCTCATTA
66 GAAATAGTCATATTAATAAAATATTAACTCTAACTTTAAAACCCTAATATAAACTTTTCTCATTG
1376512 TGCTTTTTTT
131 TGC-TTTTTT
* *
1376522 AAATTCTTTTATTATGTATTTATTTGCTTA-ATTTTTCCTCCCAAACAATAGCTTGCAATTAAAA
1 AAATTTTTTTATTATGTATTTATTTGCTTACA-TTTTCCTCCCAAACAATAGCTTGAAATTAAAA
* *
1376586 GGAAATAGTCATATTAATAAAATATTAACTCTAACTTTAAAACCCAAATATAAACTTTTTTCATT
65 GGAAATAGTCATATTAATAAAATATTAACTCTAACTTTAAAACCCTAATATAAACTTTTCTCATT
1376651 GTGCTTTTTTTTT
130 GTGC---TTTTTT
* * *
1376664 TAATTTTTTTATTATGTATTTATTTGCTGACATTTTCCTCTCAAACAATAGCTTGAAATTAAAAG
1 AAATTTTTTTATTATGTATTTATTTGCTTACATTTTCCTCCCAAACAATAGCTTGAAATTAAAAG
1376729 GAAATAGTCATATTAATAAAATATTAACTCTAACTTTAAAACCCTAATATAAACTTTTCTCATTG
66 GAAATAGTCATATTAATAAAATATTAACTCTAACTTTAAAACCCTAATATAAACTTTTCTCATTG
1376794 TG-TTTTTT
131 TGCTTTTTT
* * *
1376802 AAAATTGTTTTTGTTATATATTTATTTGCTGACATTTTCCTCCCAAACAATAGCTTGAAATTAAA
1 -AAATT-TTTTTATTATGTATTTATTTGCTTACATTTTCCTCCCAAACAATAGCTTGAAATTAAA
* *
1376867 AAGAAATAGTCATATTAATAAAATATTAACTCTAACTTTAAAACCCTAATAAAAACTTTTCTCAT
64 AGGAAATAGTCATATTAATAAAATATTAACTCTAACTTTAAAACCCTAATATAAACTTTTCTCAT
*
1376932 TGTGCTTTTTA
129 TGTGCTTTTTT
* *
1376943 AAATTTTTTTATTATGTCTTTGTTTGCTTACATTTTCCTCCCAAACAATAGCTTGAAATTAAAAG
1 AAATTTTTTTATTATGTATTTATTTGCTTACATTTTCCTCCCAAACAATAGCTTGAAATTAAAAG
*
1377008 GAAATAGTCATATTAATAAAATATTAACTCTAACTTTAAAACTCTAATATAAACTTTTCTCATTG
66 GAAATAGTCATATTAATAAAATATTAACTCTAACTTTAAAACCCTAATATAAACTTTTCTCATTG
1377073 TGCTTTTTT
131 TGCTTTTTT
* * * * *
1377082 AAAAATTTTTCTATTATTTATTTATTCGCTGACATTTTCCTCTCAAACAATAGCTTGAAATTAAA
1 --AAATTTTTTTATTATGTATTTATTTGCTTACATTTTCCTCCCAAACAATAGCTTGAAATTAAA
*
1377147 AGGAAATAGTCATATTAATAAAATATTAACTCTAACTTTAAAACCCTAATAAAAACTTTTCTCAT
64 AGGAAATAGTCATATTAATAAAATATTAACTCTAACTTTAAAACCCTAATATAAACTTTTCTCAT
*
1377212 TGT-TTTTTTT
129 TGTGCTTTTTT
* * * *
1377222 AAAATTTTTTATTATGTCTTTGTTTGCTTACATTTTTCTCCCAAACAATAGCTTGAAATTAAAAG
1 AAATTTTTTTATTATGTATTTATTTGCTTACATTTTCCTCCCAAACAATAGCTTGAAATTAAAAG
* *
1377287 GAAATAGTCATATTAATAAAATATTAACTTTAACTTTAAAACTCTAATATAAACTTTTCTCATTG
66 GAAATAGTCATATTAATAAAATATTAACTCTAACTTTAAAACCCTAATATAAACTTTTCTCATTG
*
1377352 TGCTTTTTAAA
131 TGCTTTTT--T
* *
1377363 AAATTTTTCTATTATGTATTTATTTGCTGACATTTTCCTCCCAAACAATAGCTTGAAATTAAAAG
1 AAATTTTTTTATTATGTATTTATTTGCTTACATTTTCCTCCCAAACAATAGCTTGAAATTAAAAG
* *
1377428 GAAATAGTCATATTAATAAAATATTAACTCTAACTTTAAAACTCTAATATAAACTTTTCTCATCG
66 GAAATAGTCATATTAATAAAATATTAACTCTAACTTTAAAACCCTAATATAAACTTTTCTCATTG
1377493 TGCTTTTTT
131 TGCTTTTTT
* *
1377502 AAAATTTTTCTATTATGTATTTATTTGCTGACATTTTCCTCCCAAACAATAGCTTGAAATTAAAA
1 -AAATTTTTTTATTATGTATTTATTTGCTTACATTTTCCTCCCAAACAATAGCTTGAAATTAAAA
*
1377567 GAAAATAGTCATATTAATAAAATATTAACTCTAACTTTAAAACCCTAATATAAACTTTTCTCATT
65 GGAAATAGTCATATTAATAAAATATTAACTCTAACTTTAAAACCCTAATATAAACTTTTCTCATT
*
1377632 GTGCTTTTTAA
130 GTGCTTTTT-T
*
1377643 AAATTTTTTTGTTATGTATTTATTTGCTTACATTTTCCTCCCAAACAATAGCTTGAAATTAAAAG
1 AAATTTTTTTATTATGTATTTATTTGCTTACATTTTCCTCCCAAACAATAGCTTGAAATTAAAAG
* *
1377708 GAAATAGTCATATTAATAAAATATTAATTCTAGCTTT-AAACCCTAATATAAACTTTTCTCATTG
66 GAAATAGTCATATTAATAAAATATTAACTCTAACTTTAAAACCCTAATATAAACTTTTCTCATTG
1377772 TGCTTTTTTT
131 TGC-TTTTTT
*
1377782 AAATTTTTTTATCATGTATTTATTTGCTTACATTTTCCTCCCAAACAATAGCTTGAAATTAAAAG
1 AAATTTTTTTATTATGTATTTATTTGCTTACATTTTCCTCCCAAACAATAGCTTGAAATTAAAAG
* *
1377847 GAAATAGTAATATTAATAAAATATTAACTCTAACTTTAAAACCCTAATATAAACTTTTCTCATTT
66 GAAATAGTCATATTAATAAAATATTAACTCTAACTTTAAAACCCTAATATAAACTTTTCTCATTG
1377912 TGCTGTTTTT
131 TGCT-TTTTT
* *
1377922 AAATTTTTTTATTATGTATTTATTTGCTTACATTCTCCTCCCAAACAATGGCTTGAAATTAAAAG
1 AAATTTTTTTATTATGTATTTATTTGCTTACATTTTCCTCCCAAACAATAGCTTGAAATTAAAAG
* * *
1377987 GAAATAGTCATATTACTAAAATATTAACTTTAACTTTAAAACCCTAATATAAACTTTTTTCATTG
66 GAAATAGTCATATTAATAAAATATTAACTCTAACTTTAAAACCCTAATATAAACTTTTCTCATTG
*
1378052 TGCCTTTTTA
131 TG-CTTTTTT
* * *
1378062 AAATTTTTTTATTATGTATTTATTTACTTACATTTTCCTCCCAAACAATAGCTTGAAATCAAAAC
1 AAATTTTTTTATTATGTATTTATTTGCTTACATTTTCCTCCCAAACAATAGCTTGAAATTAAAAG
*
1378127 GAAATAGTCATATTAATAAAATATTAACTCTAACTTTAAAACCCTAATATAAACTTTTTTCATTG
66 GAAATAGTCATATTAATAAAATATTAACTCTAACTTTAAAACCCTAATATAAACTTTTCTCATTG
1378192 TGCTTTTT
131 TGCTTTTT
1378200 ATAACGTATT
Statistics
Matches: 3628, Mismatches: 249, Indels: 87
0.92 0.06 0.02
Matches are distributed among these distances:
138 134 0.04
139 586 0.16
140 2060 0.57
141 576 0.16
142 271 0.07
143 1 0.00
ACGTcount: A:0.36, C:0.14, G:0.07, T:0.43
Consensus pattern (139 bp):
AAATTTTTTTATTATGTATTTATTTGCTTACATTTTCCTCCCAAACAATAGCTTGAAATTAAAAG
GAAATAGTCATATTAATAAAATATTAACTCTAACTTTAAAACCCTAATATAAACTTTTCTCATTG
TGCTTTTTT
Found at i:1378383 original size:16 final size:17
Alignment explanation
Indices: 1378359--1378391 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
1378349 CTCAGCAATT
1378359 ATAAAAAAAAT-TAAAA
1 ATAAAAAAAATGTAAAA
*
1378375 ATAATAAAAATGTAAAA
1 ATAAAAAAAATGTAAAA
1378392 TGATTTTTTG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 10 0.67
17 5 0.33
ACGTcount: A:0.76, C:0.00, G:0.03, T:0.21
Consensus pattern (17 bp):
ATAAAAAAAATGTAAAA
Found at i:1379375 original size:20 final size:20
Alignment explanation
Indices: 1379334--1379376 Score: 52
Period size: 20 Copynumber: 2.1 Consensus size: 20
1379324 GTTGTTTCGT
* *
1379334 TTTTTAAAATTATTATTTTA
1 TTTTTAAAAATATTATTATA
1379354 TTTTTAAAAATATT-TATATA
1 TTTTTAAAAATATTAT-TATA
1379374 TTT
1 TTT
1379377 ATTTTATATT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
19 1 0.05
20 19 0.95
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (20 bp):
TTTTTAAAAATATTATTATA
Found at i:1380213 original size:19 final size:20
Alignment explanation
Indices: 1380191--1380230 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
1380181 TTAAAAATAA
*
1380191 TAATTTAAA-TATATTAAAT
1 TAATTTAAATTATATAAAAT
1380210 TAATTTAAATTATATAAAAT
1 TAATTTAAATTATATAAAAT
1380230 T
1 T
1380231 TTATTTAAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 9 0.47
20 10 0.53
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (20 bp):
TAATTTAAATTATATAAAAT
Found at i:1380737 original size:24 final size:24
Alignment explanation
Indices: 1380709--1380754 Score: 83
Period size: 24 Copynumber: 1.9 Consensus size: 24
1380699 AATAAAAATT
1380709 AGCCACCAATTTTGACAAACAACA
1 AGCCACCAATTTTGACAAACAACA
*
1380733 AGCCACCAATTTTTACAAACAA
1 AGCCACCAATTTTGACAAACAA
1380755 AAATAACCAC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.46, C:0.28, G:0.07, T:0.20
Consensus pattern (24 bp):
AGCCACCAATTTTGACAAACAACA
Found at i:1380792 original size:28 final size:28
Alignment explanation
Indices: 1380759--1380841 Score: 148
Period size: 28 Copynumber: 3.0 Consensus size: 28
1380749 AAACAAAAAT
*
1380759 AACCACCATATTTGACAAATATAAAGGA
1 AACCACCATATTTGACAAATACAAAGGA
1380787 AACCACCATATTTGACAAATACAAAGGA
1 AACCACCATATTTGACAAATACAAAGGA
*
1380815 AACTACCATATTTGACAAATACAAAGG
1 AACCACCATATTTGACAAATACAAAGG
1380842 GTGGCATTTG
Statistics
Matches: 53, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 53 1.00
ACGTcount: A:0.49, C:0.19, G:0.11, T:0.20
Consensus pattern (28 bp):
AACCACCATATTTGACAAATACAAAGGA
Found at i:1382783 original size:21 final size:21
Alignment explanation
Indices: 1382745--1382785 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
1382735 ATCTGTTGAA
* **
1382745 ACTCCACCTGTTTTGGAGTAT
1 ACTCCACCTGCTGCGGAGTAT
1382766 ACTCCACCTGCTGCGGAGTA
1 ACTCCACCTGCTGCGGAGTA
1382786 CCACTTGTCT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.20, C:0.29, G:0.22, T:0.29
Consensus pattern (21 bp):
ACTCCACCTGCTGCGGAGTAT
Found at i:1385364 original size:24 final size:24
Alignment explanation
Indices: 1385336--1385381 Score: 83
Period size: 24 Copynumber: 1.9 Consensus size: 24
1385326 AATAAAAATT
1385336 AGCCACCAATTTTGACAAACAACA
1 AGCCACCAATTTTGACAAACAACA
*
1385360 AGCCACCAATTTTTACAAACAA
1 AGCCACCAATTTTGACAAACAA
1385382 AAATAACCAC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.46, C:0.28, G:0.07, T:0.20
Consensus pattern (24 bp):
AGCCACCAATTTTGACAAACAACA
Found at i:1385419 original size:28 final size:28
Alignment explanation
Indices: 1385386--1385468 Score: 148
Period size: 28 Copynumber: 3.0 Consensus size: 28
1385376 AAACAAAAAT
*
1385386 AACCACCATATTTGACAAATATAAAGGA
1 AACCACCATATTTGACAAATACAAAGGA
1385414 AACCACCATATTTGACAAATACAAAGGA
1 AACCACCATATTTGACAAATACAAAGGA
*
1385442 AACTACCATATTTGACAAATACAAAGG
1 AACCACCATATTTGACAAATACAAAGG
1385469 GTGGCATTTG
Statistics
Matches: 53, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 53 1.00
ACGTcount: A:0.49, C:0.19, G:0.11, T:0.20
Consensus pattern (28 bp):
AACCACCATATTTGACAAATACAAAGGA
Found at i:1385694 original size:20 final size:21
Alignment explanation
Indices: 1385670--1385734 Score: 60
Period size: 22 Copynumber: 3.0 Consensus size: 21
1385660 TAATAAATTA
1385670 AAATTTATATAAATATATAAT
1 AAATTTATATAAATATATAAT
*
1385691 -AATTTAAGTATAATTATGATAAAT
1 AAATTT-A-TATAAATAT-AT-AAT
* *
1385715 AAATTAATATGAATATATAA
1 AAATTTATATAAATATATAA
1385735 ATTATTGAAT
Statistics
Matches: 35, Mismatches: 4, Indels: 10
0.71 0.08 0.20
Matches are distributed among these distances:
20 5 0.14
21 3 0.09
22 10 0.29
23 9 0.26
24 4 0.11
25 4 0.11
ACGTcount: A:0.55, C:0.00, G:0.05, T:0.40
Consensus pattern (21 bp):
AAATTTATATAAATATATAAT
Found at i:1385755 original size:15 final size:16
Alignment explanation
Indices: 1385713--1385755 Score: 52
Period size: 15 Copynumber: 2.6 Consensus size: 16
1385703 ATTATGATAA
1385713 ATAAATTAATATGAATAT
1 ATAAATT-AT-TGAATAT
1385731 ATAAATTATTGAATAT
1 ATAAATTATTGAATAT
*
1385747 -TATATTATT
1 ATAAATTATT
1385756 TATGTATATA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
15 8 0.33
16 7 0.29
17 2 0.08
18 7 0.29
ACGTcount: A:0.49, C:0.00, G:0.05, T:0.47
Consensus pattern (16 bp):
ATAAATTATTGAATAT
Found at i:1385852 original size:14 final size:13
Alignment explanation
Indices: 1385814--1385844 Score: 55
Period size: 12 Copynumber: 2.5 Consensus size: 13
1385804 ATTGATATAG
1385814 ATAAAAAATTTA-
1 ATAAAAAATTTAT
1385826 ATAAAAAATTTAT
1 ATAAAAAATTTAT
1385839 ATAAAA
1 ATAAAA
1385845 TAAATTATTA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 12 0.67
13 6 0.33
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (13 bp):
ATAAAAAATTTAT
Found at i:1386348 original size:34 final size:31
Alignment explanation
Indices: 1386309--1386382 Score: 78
Period size: 31 Copynumber: 2.3 Consensus size: 31
1386299 CCTAACATGT
1386309 ATTATTATAGTGTTTTATTATTTATAATAA-AATA
1 ATTATTATA-T-TTTTA--ATTTATAATAATAATA
* *
1386343 TTTATTAGCATTTTTAATTTATAATAATAATA
1 ATTATTA-TATTTTTAATTTATAATAATAATA
1386375 ATTATTAT
1 ATTATTAT
1386383 TATTATTATT
Statistics
Matches: 34, Mismatches: 4, Indels: 7
0.76 0.09 0.16
Matches are distributed among these distances:
31 11 0.32
32 10 0.29
33 5 0.15
34 7 0.21
35 1 0.03
ACGTcount: A:0.41, C:0.01, G:0.04, T:0.54
Consensus pattern (31 bp):
ATTATTATATTTTTAATTTATAATAATAATA
Found at i:1393510 original size:20 final size:19
Alignment explanation
Indices: 1393487--1393652 Score: 89
Period size: 20 Copynumber: 7.8 Consensus size: 19
1393477 AAAAAGACAG
1393487 AATGTATCGATACATTGAA
1 AATGTATCGATACATTGAA
* *
1393506 GAATGTATCGATATATTTATA
1 -AATGTATCGATACATTGA-A
* *
1393527 CATGTATCGATACACTGAA
1 AATGTATCGATACATTGAA
1393546 AGATGTATCGATACATCTGGATAAAAAACAA
1 A-ATGTATCGATACAT-T-G---------AA
*
1393577 AATATATCGATACATTGAA
1 AATGTATCGATACATTGAA
* *
1393596 GAATGTATCGAGACATTCATA
1 -AATGTATCGATACATTGA-A
* * *
1393617 TATGTATCGATATATTAAAA
1 AATGTATCGATACATT-GAA
1393637 AATGTATCGATACATT
1 AATGTATCGATACATT
1393653 TAGGTAAAAA
Statistics
Matches: 112, Mismatches: 18, Indels: 32
0.69 0.11 0.20
Matches are distributed among these distances:
19 3 0.03
20 86 0.77
21 4 0.04
22 1 0.01
28 1 0.01
29 1 0.01
30 13 0.12
31 3 0.03
ACGTcount: A:0.42, C:0.11, G:0.14, T:0.32
Consensus pattern (19 bp):
AATGTATCGATACATTGAA
Found at i:1393661 original size:90 final size:90
Alignment explanation
Indices: 1393437--1393662 Score: 310
Period size: 90 Copynumber: 2.5 Consensus size: 90
1393427 AATTAACTAG
* * *
1393437 ATGTATCGATACATTGAATAATGTATCGATACATCTGGGTAAAAAGACAGAATGTATCGATACAT
1 ATGTATCGATACATTGAAAAATGTATCGATACATCT-GGTAAAAAGACAAAATATATCGATACAT
* * *
1393502 TGAAGAATGTATCGATATATTTATAC
65 TGAAGAATGTATCGAGACATTCATAC
* *
1393528 ATGTATCGATACACTGAAAGATGTATCGATACATCTGGATAAAAA-ACAAAATATATCGATACAT
1 ATGTATCGATACATTGAAAAATGTATCGATACATCTGG-TAAAAAGACAAAATATATCGATACAT
*
1393592 TGAAGAATGTATCGAGACATTCATAT
65 TGAAGAATGTATCGAGACATTCATAC
* * *
1393618 ATGTATCGATATATTAAAAAATGTATCGATACATTTAGGTAAAAA
1 ATGTATCGATACATTGAAAAATGTATCGATACATCT-GGTAAAAA
1393663 TGTGACTTTT
Statistics
Matches: 119, Mismatches: 14, Indels: 5
0.86 0.10 0.04
Matches are distributed among these distances:
90 78 0.66
91 41 0.34
ACGTcount: A:0.42, C:0.11, G:0.16, T:0.31
Consensus pattern (90 bp):
ATGTATCGATACATTGAAAAATGTATCGATACATCTGGTAAAAAGACAAAATATATCGATACATT
GAAGAATGTATCGAGACATTCATAC
Found at i:1397402 original size:18 final size:18
Alignment explanation
Indices: 1397376--1397435 Score: 79
Period size: 19 Copynumber: 3.4 Consensus size: 18
1397366 TAAAAATCTA
*
1397376 ATAAATTTTAAAAAATTT
1 ATAATTTTTAAAAAATTT
*
1397394 GTAATTTTTAAAAAAATTT
1 ATAATTTTT-AAAAAATTT
1397413 ATAATTTTT--AAAATTT
1 ATAATTTTTAAAAAATTT
1397429 ATAATTT
1 ATAATTT
1397436 ATGTTGATCC
Statistics
Matches: 38, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
16 14 0.37
18 7 0.18
19 17 0.45
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (18 bp):
ATAATTTTTAAAAAATTT
Found at i:1399029 original size:20 final size:20
Alignment explanation
Indices: 1399006--1399052 Score: 51
Period size: 20 Copynumber: 2.4 Consensus size: 20
1398996 AATCACATAG
1399006 ATTATTTG-ATAAAAATAATA
1 ATTATTTGAATAAAAATAA-A
* **
1399026 ATTATATGAATAATTATAAA
1 ATTATTTGAATAAAAATAAA
1399046 ATTATTT
1 ATTATTT
1399053 AAAAGCTTTA
Statistics
Matches: 22, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
20 14 0.64
21 8 0.36
ACGTcount: A:0.51, C:0.00, G:0.04, T:0.45
Consensus pattern (20 bp):
ATTATTTGAATAAAAATAAA
Done.