Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1733
Parameters: 2 7 7 80 10 50 1000
Length:  59764

Tables:   1   

This is table  1  of  1  ( 30 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3121--3169
20
2.5
20
86
0
71
32
20
8
38
1.82
3121--3191
20
3.5
20
82
1
70
32
19
8
39
1.82
5814--5869
20
2.8
20
80
0
58
33
12
16
37
1.86
5907--5971
33
2.0
33
87
3
96
41
13
15
29
1.86
6663--6778
56
2.1
56
95
0
205
37
28
0
33
1.58
19043--19118
31
2.5
31
91
0
125
38
17
17
27
1.91
23619--23673
19
2.9
19
94
0
92
29
14
14
41
1.85
23719--23770
13
4.5
13
73
26
62
32
13
15
38
1.86
23702--23770
33
2.1
33
89
5
104
31
14
15
37
1.88
25967--26039
20
3.6
20
81
3
101
35
13
19
31
1.91
25967--26061
41
2.3
42
94
1
165
38
12
17
30
1.87
26100--26125
13
2.0
13
100
0
52
38
15
15
30
1.88
30187--30217
15
2.1
15
93
0
53
48
16
22
12
1.80
32231--32309
20
3.7
21
75
15
72
26
13
15
44
1.84
32296--32334
13
3.0
13
96
0
69
30
17
15
35
1.91
34780--34852
20
3.6
20
81
3
101
35
13
19
31
1.91
34780--34874
41
2.3
42
94
1
165
38
12
17
30
1.87
34913--34938
13
2.0
13
100
0
52
38
15
15
30
1.88
39359--39391
16
2.0
17
94
5
59
36
0
21
42
1.53
41347--41403
21
2.9
21
72
12
59
43
0
0
56
0.99
41355--41385
16
1.9
16
93
0
53
41
0
0
58
0.98
42300--42356
27
2.0
30
86
10
84
31
1
0
66
1.02
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
42311--42378
30
2.4
28
80
11
75
35
1
0
63
1.04
44524--44566
18
2.4
18
84
7
52
69
6
0
23
1.12
45096--45127
16
2.0
16
93
0
55
53
0
0
46
1.00
45471--45525
24
2.4
22
77
19
58
45
3
0
50
1.19
45544--45592
22
2.2
23
81
3
55
38
8
0
53
1.31
51320--51567
68
3.7
67
79
4
272
41
19
12
27
1.87
51276--51536
136
1.9
135
85
2
362
39
20
12
28
1.88
59700--59755
20
2.7
21
83
10
71
41
17
14
26
1.88

Tables:   1

The End!