Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold174
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 2085601
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
Warning! 25 characters in sequence are not A, C, G, or T
File 3 of 15
Found at i:271131 original size:100 final size:102
Alignment explanation
Indices: 271021--271226 Score: 292
Period size: 104 Copynumber: 2.0 Consensus size: 102
271011 TGAATGGACT
* *
271021 TTAATCTTCTTTGGGGTTGTTCATAGAGC-AATTAGTTGATTTTCTTTTGATAATTACATTAAGA
1 TTAATCTTCTTTGGGGTTGTTCATAGAGCAAATTAGTTAATTTTCTTTTGAGAATTACATTAAGA
* * *
271085 TAT-TA-ATTTTTTTATGATTTTTAATTTTTTTGAAAA
66 TATAAATATTTTTTTATGA-TTTTAATTATTCTGAAAA
*
271121 TTAATCTTCTTTGGGGTTGTTCATAGATCAATTAATTAGTTAATTTTCTTTTGAGAATTACATTA
1 TTAATCTTCTTTGGGGTTGTTCATAGAGC-A--AATTAGTTAATTTTCTTTTGAGAATTACATTA
*
271186 GGATATAAATATTTTTTTATGATTTTAATTATTCTGAAAA
63 AGATATAAATATTTTTTTATGATTTTAATTATTCTGAAAA
271226 T
1 T
271227 GAATGTACAT
Statistics
Matches: 93, Mismatches: 7, Indels: 7
0.87 0.07 0.07
Matches are distributed among these distances:
100 28 0.30
104 35 0.38
105 18 0.19
106 12 0.13
ACGTcount: A:0.30, C:0.06, G:0.13, T:0.51
Consensus pattern (102 bp):
TTAATCTTCTTTGGGGTTGTTCATAGAGCAAATTAGTTAATTTTCTTTTGAGAATTACATTAAGA
TATAAATATTTTTTTATGATTTTAATTATTCTGAAAA
Found at i:271273 original size:332 final size:337
Alignment explanation
Indices: 270709--271318 Score: 926
Period size: 332 Copynumber: 1.8 Consensus size: 337
270699 TAATAATTAC
*
270709 TTAGTTGATTTTCTTTTGATAATTACATTAGGATATTAATTTTTTTATGATTATTAATATTTGTG
1 TTAGTTGATTTTCTTTTGATAATTACATTAAGATATTAATTTTTTTATGATTATTAATATTTGT-
* *
270774 AAAATGAGTGGACATTAATCTTCTTTAGGGTTGTTCATAGAGCAAATTAATTAGTTAATTTTCAT
65 ---AT--GTGAAAATTAATCTTCTTTAGGGTTGTTCATAGAGCAAATTAATTAGTTAATTTTCAT
* * *
270839 TTGAGAATTACATTAGGATATTAATATTTTTGTATGATTTTAATTATTGTGAAAATGAAATGGAT
125 TTGAGAATTACATTAGGATATAAATATTTTTGTATGATTTTAATTATTCTGAAAATGAAATGGAC
* ** * *
270904 ATTAATTTCTTTGGGGTTGTTCATTATGGAGTAATTAATTAGTTCATTTCTTTTGAGAATTACAT
190 ATTAATTTCTTTGGGGTTGTTCATAATAAAATAATTAATTAATTCATTTCTTTTGAGAATTACAT
270969 TAGGATATTAATTTTTTTAATGATTTTTAATTTTTGTGAAAATGAATGGACTTTAATCTTCTTTG
255 TAGGATATTAATTTTTTTAATGATTTTTAATTTTTGTGAAAATGAATGGACTTTAATCTTCTTTG
271034 GGGTTGTTCATAGAGCAA
320 GGGTTGTTCATAGAGCAA
*
271052 TTAGTTGATTTTCTTTTGATAATTACATTAAGATATTAATTTTTTTATGATTTTTAAT-TTT-T-
1 TTAGTTGATTTTCTTTTGATAATTACATTAAGATATTAATTTTTTTATGATTATTAATATTTGTA
* * *
271114 T-TGAAAATTAATCTTCTTTGGGGTTGTTCATAGATC-AATTAATTAGTTAATTTTCTTTTGAGA
66 TGTGAAAATTAATCTTCTTTAGGGTTGTTCATAGAGCAAATTAATTAGTTAATTTTCATTTGAGA
* *
271177 ATTACATTAGGATATAAATATTTTTTTATGATTTTAATTATTCTGAAAATG-AATGTACATTAAT
131 ATTACATTAGGATATAAATATTTTTGTATGATTTTAATTATTCTGAAAATGAAATGGACATTAAT
* * * *
271241 TTCTTTGGGGTTTTTTTATAATAAAATAATTAATTAATTGATTTCTTTTGAGAATTACATTATGA
196 TTCTTTGGGG-TTGTTCATAATAAAATAATTAATTAATTCATTTCTTTTGAGAATTACATTAGGA
271306 TATTAATTTTTTT
260 TATTAATTTTTTT
271319 CTATATTTCT
Statistics
Matches: 245, Mismatches: 21, Indels: 13
0.88 0.08 0.05
Matches are distributed among these distances:
331 21 0.09
332 132 0.54
333 31 0.13
336 1 0.00
341 1 0.00
342 3 0.01
343 56 0.23
ACGTcount: A:0.31, C:0.05, G:0.14, T:0.50
Consensus pattern (337 bp):
TTAGTTGATTTTCTTTTGATAATTACATTAAGATATTAATTTTTTTATGATTATTAATATTTGTA
TGTGAAAATTAATCTTCTTTAGGGTTGTTCATAGAGCAAATTAATTAGTTAATTTTCATTTGAGA
ATTACATTAGGATATAAATATTTTTGTATGATTTTAATTATTCTGAAAATGAAATGGACATTAAT
TTCTTTGGGGTTGTTCATAATAAAATAATTAATTAATTCATTTCTTTTGAGAATTACATTAGGAT
ATTAATTTTTTTAATGATTTTTAATTTTTGTGAAAATGAATGGACTTTAATCTTCTTTGGGGTTG
TTCATAGAGCAA
Found at i:273902 original size:19 final size:20
Alignment explanation
Indices: 273878--273921 Score: 63
Period size: 19 Copynumber: 2.2 Consensus size: 20
273868 TCAACTCGAT
*
273878 TTAAAATAATA-ATTTTTAA
1 TTAAAATAATATATTATTAA
*
273897 TTAAAATAATATATTATTAT
1 TTAAAATAATATATTATTAA
273917 TTAAA
1 TTAAA
273922 TTTAATTATA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 11 0.50
20 11 0.50
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (20 bp):
TTAAAATAATATATTATTAA
Found at i:273952 original size:14 final size:14
Alignment explanation
Indices: 273903--273955 Score: 54
Period size: 14 Copynumber: 3.7 Consensus size: 14
273893 TTAATTAAAA
*
273903 TAATATATTATTATT
1 TAATATATAATTA-T
*
273918 TAA-ATTTAATTAT
1 TAATATATAATTAT
*
273931 AAAATATATAATTAT
1 -TAATATATAATTAT
273946 TAATATATAA
1 TAATATATAA
273956 ATAATTTTTT
Statistics
Matches: 31, Mismatches: 5, Indels: 5
0.76 0.12 0.12
Matches are distributed among these distances:
13 1 0.03
14 18 0.58
15 12 0.39
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (14 bp):
TAATATATAATTAT
Found at i:274692 original size:19 final size:18
Alignment explanation
Indices: 274668--274704 Score: 56
Period size: 19 Copynumber: 2.0 Consensus size: 18
274658 ATTAAAAAGC
274668 ATATTATTTAATTAAATAT
1 ATATTATTT-ATTAAATAT
*
274687 ATATTATTTTTTAAATAT
1 ATATTATTTATTAAATAT
274705 TCACTATATT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 8 0.47
19 9 0.53
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (18 bp):
ATATTATTTATTAAATAT
Found at i:274757 original size:20 final size:20
Alignment explanation
Indices: 274713--274772 Score: 68
Period size: 20 Copynumber: 3.0 Consensus size: 20
274703 ATTCACTATA
274713 TTAA-TATTTATTTAATATT
1 TTAATTATTTATTTAATATT
**
274732 AAAATTATTTATTTAATATT
1 TTAATTATTTATTTAATATT
* *
274752 TTAATTTTTTAATTAAATATT
1 TTAATTATTT-ATTTAATATT
274773 CTGATTCAAC
Statistics
Matches: 33, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
19 2 0.06
20 22 0.67
21 9 0.27
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (20 bp):
TTAATTATTTATTTAATATT
Found at i:275567 original size:2 final size:2
Alignment explanation
Indices: 275562--275587 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
275552 TATGTTCTTA
275562 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
275588 TTCTTTTCCT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:277920 original size:6 final size:6
Alignment explanation
Indices: 277909--277939 Score: 55
Period size: 6 Copynumber: 5.3 Consensus size: 6
277899 CTAAAAGGGG
277909 AAAAGA AAAAGA AAAAGA AAAAG- AAAAGA AA
1 AAAAGA AAAAGA AAAAGA AAAAGA AAAAGA AA
277940 GAAAAGCTCA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
5 5 0.21
6 19 0.79
ACGTcount: A:0.84, C:0.00, G:0.16, T:0.00
Consensus pattern (6 bp):
AAAAGA
Found at i:278551 original size:27 final size:29
Alignment explanation
Indices: 278507--278564 Score: 86
Period size: 26 Copynumber: 2.1 Consensus size: 29
278497 ATATAAAATA
*
278507 TAAAAATATATTTATTTTTTTA-TATATT
1 TAAAAATATATTTATTTTTATATTATATT
278535 TAAAAA-AT-TTTATTTTTATATTATATT
1 TAAAAATATATTTATTTTTATATTATATT
278562 TAA
1 TAA
278565 TATATATCGA
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
26 11 0.39
27 11 0.39
28 6 0.21
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (29 bp):
TAAAAATATATTTATTTTTATATTATATT
Found at i:279814 original size:17 final size:17
Alignment explanation
Indices: 279776--279808 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
279766 CTTAAACTCG
*
279776 TATAAATATTAAATATA
1 TATATATATTAAATATA
279793 TATATATATTAAATAT
1 TATATATATTAAATAT
279809 GAATATTAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (17 bp):
TATATATATTAAATATA
Found at i:280064 original size:13 final size:13
Alignment explanation
Indices: 280039--280078 Score: 50
Period size: 12 Copynumber: 3.3 Consensus size: 13
280029 TAAAAATATA
280039 AAAATATAATTTT
1 AAAATATAATTTT
280052 AAAAT-TAATTTT
1 AAAATATAATTTT
*
280064 -TAATAT-ATTTT
1 AAAATATAATTTT
280075 AAAA
1 AAAA
280079 AGTTATTTAA
Statistics
Matches: 23, Mismatches: 2, Indels: 5
0.77 0.07 0.17
Matches are distributed among these distances:
11 8 0.35
12 10 0.43
13 5 0.22
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (13 bp):
AAAATATAATTTT
Found at i:280660 original size:19 final size:19
Alignment explanation
Indices: 280638--280700 Score: 60
Period size: 19 Copynumber: 3.4 Consensus size: 19
280628 GTTTTATACG
280638 ATATAATTATATAAATATA
1 ATATAATTATATAAATATA
** *
280657 ATATAAAAATATAATTA-A
1 ATATAATTATATAAATATA
*
280675 ATTATAA-GATA-AAATATA
1 A-TATAATTATATAAATATA
280693 ATATAATT
1 ATATAATT
280701 TAACTGAATT
Statistics
Matches: 35, Mismatches: 6, Indels: 7
0.73 0.12 0.15
Matches are distributed among these distances:
17 9 0.26
18 7 0.20
19 19 0.54
ACGTcount: A:0.60, C:0.00, G:0.02, T:0.38
Consensus pattern (19 bp):
ATATAATTATATAAATATA
Found at i:280661 original size:13 final size:12
Alignment explanation
Indices: 280638--280698 Score: 70
Period size: 12 Copynumber: 4.9 Consensus size: 12
280628 GTTTTATACG
280638 ATATAATTATATAA
1 ATATAA-TATA-AA
280652 ATATAATATAAAA
1 ATATAATAT-AAA
280665 ATATAAT-TAAA
1 ATATAATATAAA
* *
280676 TTATAAGATAAA
1 ATATAATATAAA
280688 ATATAATATAA
1 ATATAATATAA
280699 TTTAACTGAA
Statistics
Matches: 41, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
11 8 0.20
12 14 0.34
13 12 0.29
14 7 0.17
ACGTcount: A:0.62, C:0.00, G:0.02, T:0.36
Consensus pattern (12 bp):
ATATAATATAAA
Found at i:280700 original size:23 final size:24
Alignment explanation
Indices: 280646--280700 Score: 69
Period size: 23 Copynumber: 2.3 Consensus size: 24
280636 CGATATAATT
* *
280646 ATATAAATATAATATAAAAATATA
1 ATATAATTATAAGATAAAAATATA
280670 AT-TAAATTATAAGAT-AAAATATA
1 ATAT-AATTATAAGATAAAAATATA
280693 ATATAATT
1 ATATAATT
280701 TAACTGAATT
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
23 15 0.56
24 12 0.44
ACGTcount: A:0.62, C:0.00, G:0.02, T:0.36
Consensus pattern (24 bp):
ATATAATTATAAGATAAAAATATA
Found at i:281248 original size:4 final size:4
Alignment explanation
Indices: 281241--281273 Score: 66
Period size: 4 Copynumber: 8.2 Consensus size: 4
281231 TATACATATA
281241 TATG TATG TATG TATG TATG TATG TATG TATG T
1 TATG TATG TATG TATG TATG TATG TATG TATG T
281274 GTGTGTGTGT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 29 1.00
ACGTcount: A:0.24, C:0.00, G:0.24, T:0.52
Consensus pattern (4 bp):
TATG
Found at i:285358 original size:14 final size:15
Alignment explanation
Indices: 285339--285376 Score: 60
Period size: 14 Copynumber: 2.5 Consensus size: 15
285329 TTATTATCAC
285339 AATAAAATAAAT-TT
1 AATAAAATAAATATT
285353 AATAAAATAAATATT
1 AATAAAATAAATATT
285368 AACTAAAAT
1 AA-TAAAAT
285377 TTACATCAAC
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
14 12 0.55
15 4 0.18
16 6 0.27
ACGTcount: A:0.66, C:0.03, G:0.00, T:0.32
Consensus pattern (15 bp):
AATAAAATAAATATT
Found at i:285796 original size:22 final size:19
Alignment explanation
Indices: 285777--285815 Score: 55
Period size: 19 Copynumber: 2.1 Consensus size: 19
285767 ATTTATAAAT
285777 TAAATAAAATATATTAATAA
1 TAAA-AAAATATATTAATAA
285797 TAAAAAAATAT-TT-ATAA
1 TAAAAAAATATATTAATAA
285814 TA
1 TA
285816 GTTATTTAGT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
17 6 0.32
18 2 0.11
19 7 0.37
20 4 0.21
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (19 bp):
TAAAAAAATATATTAATAA
Found at i:285807 original size:17 final size:17
Alignment explanation
Indices: 285782--285815 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
285772 TAAATTAAAT
*
285782 AAAATATATTAATAATA
1 AAAAAATATTAATAATA
*
285799 AAAAAATATTTATAATA
1 AAAAAATATTAATAATA
285816 GTTATTTAGT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (17 bp):
AAAAAATATTAATAATA
Found at i:285814 original size:20 final size:21
Alignment explanation
Indices: 285766--285815 Score: 61
Period size: 20 Copynumber: 2.5 Consensus size: 21
285756 TTAAAATTTT
*
285766 TATTTATAA-ATTAAATAAAA
1 TATTTATAATAATAAATAAAA
*
285786 TATAT-TAATAATAAA-AAAA
1 TATTTATAATAATAAATAAAA
285805 TATTTATAATA
1 TATTTATAATA
285816 GTTATTTAGT
Statistics
Matches: 25, Mismatches: 3, Indels: 4
0.78 0.09 0.12
Matches are distributed among these distances:
19 11 0.44
20 14 0.56
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (21 bp):
TATTTATAATAATAAATAAAA
Found at i:286333 original size:178 final size:178
Alignment explanation
Indices: 286029--286359 Score: 540
Period size: 178 Copynumber: 1.9 Consensus size: 178
286019 TTTCTTATCC
*
286029 AACTTGTTTTAATTAATAAAAGAAAGTATTTTGTTTAATGCATTAAAAATAAAACTATCAATTAT
1 AACTTGTTTTAATTAATAAAAGAAAATATTTTGTTTAATGCATTAAAAATAAAACTATCAATTAT
*
286094 TACAATTAATACAATATTATTATTATAAATGATATTAATTAATTTTTAAAAATATTTTAAAATAT
66 TACAATTAATACAATATTATTATTATAAATAATATTAATTAATTTTTAAAAATATTTTAAAATAT
*
286159 TCATTTATAAAATTGTTAAAAAAATTATTTTCAAATTGCAGCAAAAAA
131 TCATTTATAAAATCGTTAAAAAAATTATTTTCAAATTGCAGCAAAAAA
* *
286207 AACTT-TTTTAATTAATAAAAGAAAATATTTTGTTTATTGCATTAAAAAATAAAATTATCAATTA
1 AACTTGTTTTAATTAATAAAAGAAAATATTTTGTTTAATGCATT-AAAAATAAAACTATCAATTA
** *
286271 TTGTAATTAAT-CTAATATTATTATTATAAATAATATTAATTAATTTTTAAAGATATTTTAAAAT
65 TTACAATTAATAC-AATATTATTATTATAAATAATATTAATTAATTTTTAAAAATATTTTAAAAT
* *
286335 ATTTATTTGTAAAATCGTTAAAAAA
129 ATTCATTTATAAAATCGTTAAAAAA
286360 TATGTTTTAG
Statistics
Matches: 141, Mismatches: 10, Indels: 4
0.91 0.06 0.03
Matches are distributed among these distances:
177 37 0.26
178 104 0.74
ACGTcount: A:0.48, C:0.05, G:0.05, T:0.43
Consensus pattern (178 bp):
AACTTGTTTTAATTAATAAAAGAAAATATTTTGTTTAATGCATTAAAAATAAAACTATCAATTAT
TACAATTAATACAATATTATTATTATAAATAATATTAATTAATTTTTAAAAATATTTTAAAATAT
TCATTTATAAAATCGTTAAAAAAATTATTTTCAAATTGCAGCAAAAAA
Found at i:286694 original size:16 final size:16
Alignment explanation
Indices: 286683--286723 Score: 82
Period size: 16 Copynumber: 2.6 Consensus size: 16
286673 TCATTTCGGG
286683 TTCGGGTTATTTTGGA
1 TTCGGGTTATTTTGGA
286699 TTCGGGTTATTTTGGA
1 TTCGGGTTATTTTGGA
286715 TTCGGGTTA
1 TTCGGGTTA
286724 ATGGGGTTTA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 25 1.00
ACGTcount: A:0.12, C:0.07, G:0.32, T:0.49
Consensus pattern (16 bp):
TTCGGGTTATTTTGGA
Found at i:287666 original size:19 final size:18
Alignment explanation
Indices: 287627--287677 Score: 57
Period size: 19 Copynumber: 2.7 Consensus size: 18
287617 TTTTTTATTT
*
287627 TTAAATAATAATTATACA
1 TTAAATAATAATTACACA
*
287645 TTAAATATATAATTACATA
1 TTAAATA-ATAATTACACA
*
287664 TTATATAACTAATT
1 TTAAATAA-TAATT
287678 TAAAATTTTA
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
18 8 0.29
19 20 0.71
ACGTcount: A:0.51, C:0.06, G:0.00, T:0.43
Consensus pattern (18 bp):
TTAAATAATAATTACACA
Found at i:287698 original size:20 final size:21
Alignment explanation
Indices: 287664--287714 Score: 68
Period size: 21 Copynumber: 2.4 Consensus size: 21
287654 TAATTACATA
*
287664 TTATATAACTAATTTA-AAATT
1 TTATATTA-TAATTTATAAATT
*
287685 TTATATTATAATTTATAAGTT
1 TTATATTATAATTTATAAATT
287706 TTATATTAT
1 TTATATTAT
287715 TAACTTGATA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
20 7 0.26
21 20 0.74
ACGTcount: A:0.41, C:0.02, G:0.02, T:0.55
Consensus pattern (21 bp):
TTATATTATAATTTATAAATT
Found at i:287728 original size:21 final size:20
Alignment explanation
Indices: 287681--287728 Score: 53
Period size: 21 Copynumber: 2.3 Consensus size: 20
287671 ACTAATTTAA
*
287681 AATTTTATATTATAATTTAT
1 AATTTTATATTATAATTGAT
287701 AAGTTTTATATTATTAACTTGAT
1 AA-TTTTATATTA-TAA-TTGAT
287724 -ATTTT
1 AATTTT
287729 TTAAATAAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 5
0.80 0.03 0.17
Matches are distributed among these distances:
20 2 0.08
21 14 0.58
22 4 0.17
23 4 0.17
ACGTcount: A:0.35, C:0.02, G:0.04, T:0.58
Consensus pattern (20 bp):
AATTTTATATTATAATTGAT
Found at i:287799 original size:16 final size:16
Alignment explanation
Indices: 287778--287852 Score: 64
Period size: 16 Copynumber: 4.7 Consensus size: 16
287768 GAGTTAATTA
*
287778 TTCGGGTCATTTCAAG
1 TTCGGGTCATTTTAAG
*
287794 TTCGGGTTATTTTATA-
1 TTCGGGTCATTTTA-AG
* **
287810 TTCGGATCATTTTGGG
1 TTCGGGTCATTTTAAG
287826 TTCGGGTCATTTT-AG
1 TTCGGGTCATTTTAAG
*
287841 ATTCGGATCATT
1 -TTCGGGTCATT
287853 CTGGATTCGA
Statistics
Matches: 47, Mismatches: 9, Indels: 6
0.76 0.15 0.10
Matches are distributed among these distances:
15 1 0.02
16 45 0.96
17 1 0.02
ACGTcount: A:0.17, C:0.13, G:0.24, T:0.45
Consensus pattern (16 bp):
TTCGGGTCATTTTAAG
Found at i:287820 original size:32 final size:32
Alignment explanation
Indices: 287776--287852 Score: 100
Period size: 32 Copynumber: 2.4 Consensus size: 32
287766 TCGAGTTAAT
* *
287776 TATTCGGGTCATTTCAAGTTCGGGTTATTTTA
1 TATTCGGATCATTTCAAGTTCGGGTCATTTTA
***
287808 TATTCGGATCATTTTGGGTTCGGGTCATTTTA
1 TATTCGGATCATTTCAAGTTCGGGTCATTTTA
*
287840 GATTCGGATCATT
1 TATTCGGATCATT
287853 CTGGATTCGA
Statistics
Matches: 39, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
32 39 1.00
ACGTcount: A:0.18, C:0.13, G:0.23, T:0.45
Consensus pattern (32 bp):
TATTCGGATCATTTCAAGTTCGGGTCATTTTA
Found at i:287859 original size:16 final size:16
Alignment explanation
Indices: 287809--287861 Score: 70
Period size: 16 Copynumber: 3.3 Consensus size: 16
287799 GTTATTTTAT
287809 ATTCGGATCATTTTGG
1 ATTCGGATCATTTTGG
* * *
287825 GTTCGGGTCATTTTAG
1 ATTCGGATCATTTTGG
*
287841 ATTCGGATCATTCTGG
1 ATTCGGATCATTTTGG
287857 ATTCG
1 ATTCG
287862 AGTTATTCGG
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
16 30 1.00
ACGTcount: A:0.17, C:0.15, G:0.26, T:0.42
Consensus pattern (16 bp):
ATTCGGATCATTTTGG
Found at i:292105 original size:150 final size:154
Alignment explanation
Indices: 291920--292253 Score: 367
Period size: 154 Copynumber: 2.2 Consensus size: 154
291910 ACTTGGTTCT
* * * * *
291920 AAAAATTATAAAAATGCCCTTAAGGGATACTTTTGACGTAAAAGTCCCTGGCA-CCTCTAAAAAA
1 AAAAATTATGAAAATACCTTTAAGGGATACCTTTGACGTAAAAGTCCCTGACACCCT-TAAAAAA
* * * * * *
291984 CT-TAAAAAGATA-A-A-AGGATGAACTTATCCTAAATGCACACCTTTGACATAAAAGTGGA-CT
65 CTAAAAAAAGATATAGATAGGATGAACCTATCCTAAATACACACCTTCGACATAAAAGCGAATCT
*
292044 CGGTGAAAACCTAAAACTCGATTTTA
130 -GGTGAAAACCTAAAACTCAATTTTA
* * * **
292070 AAAAATTATGAAAATACCTTTAAGGGATACCTTTGACGTAAAAGTGCTTGATACCCTTAAAGGAC
1 AAAAATTATGAAAATACCTTTAAGGGATACCTTTGACGTAAAAGTCCCTGACACCCTTAAAAAAC
* * * * *
292135 TAAAAAAAGATATAGATAGGGTGAGCCTATCCTAAATACCCACCTTCGGCATGAAAGCGAATCTG
66 TAAAAAAAGATATAGATAGGATGAACCTATCCTAAATACACACCTTCGACATAAAAGCGAATCTG
*
292200 GTGACAACCTAAAACTCAATTTTA
131 GTGAAAACCTAAAACTCAATTTTA
* *
292224 GAAAATTATGAAAATA-CTCTTAGGGGATAC
1 AAAAATTATGAAAATACCT-TTAAGGGATAC
292254 TTTCGACATA
Statistics
Matches: 152, Mismatches: 25, Indels: 10
0.81 0.13 0.05
Matches are distributed among these distances:
150 52 0.34
151 12 0.08
152 1 0.01
153 3 0.02
154 82 0.54
155 2 0.01
ACGTcount: A:0.41, C:0.17, G:0.16, T:0.25
Consensus pattern (154 bp):
AAAAATTATGAAAATACCTTTAAGGGATACCTTTGACGTAAAAGTCCCTGACACCCTTAAAAAAC
TAAAAAAAGATATAGATAGGATGAACCTATCCTAAATACACACCTTCGACATAAAAGCGAATCTG
GTGAAAACCTAAAACTCAATTTTA
Found at i:292853 original size:13 final size:13
Alignment explanation
Indices: 292829--292863 Score: 61
Period size: 13 Copynumber: 2.6 Consensus size: 13
292819 GGATAAAAAA
292829 TATTTATTTATTAT
1 TATTT-TTTATTAT
292843 TATTTTTTATTAT
1 TATTTTTTATTAT
292856 TATTTTTT
1 TATTTTTT
292864 TAATTTTCAA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 16 0.76
14 5 0.24
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (13 bp):
TATTTTTTATTAT
Found at i:294583 original size:35 final size:35
Alignment explanation
Indices: 294526--294623 Score: 128
Period size: 35 Copynumber: 2.8 Consensus size: 35
294516 CAAGTGATTG
* * *
294526 AGAGGTTTTATCTTAGCGTTTGTAAAAGATAGGGAA
1 AGAGGTTCTATCTTAGCCTTTGTAAAAAATA-GGAA
*
294562 A-ATGTTCTATCTTAGCCTTTGTAAAAAATAGGAA
1 AGAGGTTCTATCTTAGCCTTTGTAAAAAATAGGAA
*
294596 AGAGGTTCTATCTTAGCCTTCG-AAAAAA
1 AGAGGTTCTATCTTAGCCTTTGTAAAAAA
294624 CAGTGTTGTA
Statistics
Matches: 55, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
34 11 0.20
35 43 0.78
36 1 0.02
ACGTcount: A:0.36, C:0.11, G:0.20, T:0.33
Consensus pattern (35 bp):
AGAGGTTCTATCTTAGCCTTTGTAAAAAATAGGAA
Found at i:295738 original size:3 final size:3
Alignment explanation
Indices: 295730--295769 Score: 80
Period size: 3 Copynumber: 13.3 Consensus size: 3
295720 AAGGAAGATA
295730 ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG A
1 ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG A
295770 AGAGCAAGAA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 37 1.00
ACGTcount: A:0.35, C:0.00, G:0.33, T:0.33
Consensus pattern (3 bp):
ATG
Found at i:296345 original size:13 final size:13
Alignment explanation
Indices: 296327--296351 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
296317 ATTACTCACA
296327 TGTATCGATACAT
1 TGTATCGATACAT
296340 TGTATCGATACA
1 TGTATCGATACA
296352 CTGATCTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:296416 original size:52 final size:52
Alignment explanation
Indices: 296360--296540 Score: 326
Period size: 52 Copynumber: 3.5 Consensus size: 52
296350 CACTGATCTT
* *
296360 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACATTATAAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATTAAA
*
296412 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCAATACACTATTAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATTAAA
*
296464 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATTCAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATTAAA
296516 TGTATCGATACATGCAGGCAAATTT
1 TGTATCGATACATGCAGGCAAATTT
296541 TCATATTTCG
Statistics
Matches: 124, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
52 124 1.00
ACGTcount: A:0.35, C:0.19, G:0.17, T:0.29
Consensus pattern (52 bp):
TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATTAAA
Found at i:301747 original size:38 final size:38
Alignment explanation
Indices: 301696--301771 Score: 152
Period size: 38 Copynumber: 2.0 Consensus size: 38
301686 TATCTATGTT
301696 ATTTTTGATGAAACTAACTCTTCCACGAGGAAGGTATC
1 ATTTTTGATGAAACTAACTCTTCCACGAGGAAGGTATC
301734 ATTTTTGATGAAACTAACTCTTCCACGAGGAAGGTATC
1 ATTTTTGATGAAACTAACTCTTCCACGAGGAAGGTATC
301772 GTTTGATGAT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Consensus pattern (38 bp):
ATTTTTGATGAAACTAACTCTTCCACGAGGAAGGTATC
Found at i:308524 original size:151 final size:149
Alignment explanation
Indices: 308128--308566 Score: 709
Period size: 149 Copynumber: 2.9 Consensus size: 149
308118 TTAGTAAAAA
* * * * *
308128 AAATTGATTTTATATATATTTTAATTTT-TAAAAAATTTTCTATAATTGATTAGATTTAAATTTT
1 AAATTGATTTTATATATATTTTATTTTTATAAAAAATGTT-TATAGTTGATTATATTTGAATTTT
* * * **
308192 TAATATTTTAATTTTATATTAAAAATAAAACTATTAAGTGAAATAAATATTTTTATTAATTATTA
65 TAATATTATAATTTTATATTAAAAATAAAACTATTGAGTCAAATGCATATTTTTATTAATTATTA
308257 ATTATATTTATTTAATATTC
130 ATTATATTTATTTAATATTC
*
308277 AAATTGATTTTATATATATTTTATTTTTAAAAAAAATGTTTATAGTTGATTATATTTGAATTTTT
1 AAATTGATTTTATATATATTTTATTTTTATAAAAAATGTTTATAGTTGATTATATTTGAATTTTT
*
308342 AATATTGTAATTTTATATTAAAAATAAAACTATTGAGTCAAATGCATATTTTTATTAATTATTAA
66 AATATTATAATTTTATATTAAAAATAAAACTATTGAGTCAAATGCATATTTTTATTAATTATTAA
*
308407 TTATATTTATTTAATATTT
131 TTATATTTATTTAATATTC
308426 AAATTGATTTTATATATATTTTATTTTTTATAAAAAACTGTTTATAGTTGATTATATTTGAATTT
1 AAATTGATTTTATATATATTTTA-TTTTTATAAAAAA-TGTTTATAGTTGATTATATTTGAATTT
*
308491 CTAATATTATAATTTTATATTAAAAATAAAACTATTGAGTCAAATGCATATTTTTATTAATTATT
64 TTAATATTATAATTTTATATTAAAAATAAAACTATTGAGTCAAATGCATATTTTTATTAATTATT
*
308556 AACTATATTTA
129 AATTATATTTA
308567 ATATTTATTT
Statistics
Matches: 271, Mismatches: 16, Indels: 4
0.93 0.05 0.01
Matches are distributed among these distances:
149 150 0.55
150 21 0.08
151 100 0.37
ACGTcount: A:0.41, C:0.03, G:0.05, T:0.52
Consensus pattern (149 bp):
AAATTGATTTTATATATATTTTATTTTTATAAAAAATGTTTATAGTTGATTATATTTGAATTTTT
AATATTATAATTTTATATTAAAAATAAAACTATTGAGTCAAATGCATATTTTTATTAATTATTAA
TTATATTTATTTAATATTC
Found at i:308793 original size:11 final size:11
Alignment explanation
Indices: 308761--308805 Score: 56
Period size: 11 Copynumber: 4.2 Consensus size: 11
308751 ACGATATAAG
308761 AAAAATAAT-T
1 AAAAATAATAT
* *
308771 AAATATAGTAT
1 AAAAATAATAT
308782 AAAAATAATAT
1 AAAAATAATAT
*
308793 AAAAGTAATAT
1 AAAAATAATAT
308804 AA
1 AA
308806 TATACAAATG
Statistics
Matches: 29, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
10 7 0.24
11 22 0.76
ACGTcount: A:0.67, C:0.00, G:0.04, T:0.29
Consensus pattern (11 bp):
AAAAATAATAT
Found at i:309060 original size:7 final size:7
Alignment explanation
Indices: 309048--309073 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
309038 TGAAAGAAAT
309048 AATTTTA
1 AATTTTA
309055 AATTTTA
1 AATTTTA
309062 AATTTTA
1 AATTTTA
309069 AATTT
1 AATTT
309074 AATGTAAAGT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (7 bp):
AATTTTA
Found at i:310469 original size:171 final size:169
Alignment explanation
Indices: 310174--310512 Score: 497
Period size: 171 Copynumber: 2.0 Consensus size: 169
310164 CAAATATATT
*
310174 AAAATTTAATAAATAAAAAAGTAATTAATTAAATTGTAATTTATATTATAAAGACTTCCCTGACT
1 AAAATTTAATAAATAAAAAAGTAATGAATTAAATTGTAATTTATATTATAAAGACTTCCCTGACT
* *
310239 ATATATTTTGTGATTAAAATATTAAAAAAGCTTTGAATTATTTTTGAAATAAATACTTATATTTT
66 ACATATTTTGTGATTAAAATACTAAAAAA-CTTTGAATTATTTTTGAAATAAATACTTATATTTT
310304 TATTATATTAAAATAAATTTTATTTTAAATGAAAATTTTA
130 TATTATATTAAAATAAATTTTATTTTAAATGAAAATTTTA
* ** *
310344 AAAATTTAATAAAATAAAAAAGTAATGAATTAAATTTTAATTTATATTATAAAGACTT-GTTTAT
1 AAAATTTAAT-AAATAAAAAAGTAATGAATTAAATTGTAATTTATATTATAAAGACTTCCCTGA-
310408 CGTACATATTTTGT-AGTTAAAATACTAAAAATA-TATTGAATTATTTTT-AAATAAATACTTAT
64 C-TACATATTTTGTGA-TTAAAATACTAAAAA-ACT-TTGAATTATTTTTGAAATAAATACTTAT
* * *
310470 TTTTTTATTGTATTGAAATAAATTTTATTTTAAATGAAAATTT
125 ATTTTTATTATATTAAAATAAATTTTATTTTAAATGAAAATTT
310513 ATTTAAATAT
Statistics
Matches: 153, Mismatches: 10, Indels: 11
0.88 0.06 0.06
Matches are distributed among these distances:
170 12 0.08
171 102 0.67
172 38 0.25
173 1 0.01
ACGTcount: A:0.45, C:0.04, G:0.06, T:0.45
Consensus pattern (169 bp):
AAAATTTAATAAATAAAAAAGTAATGAATTAAATTGTAATTTATATTATAAAGACTTCCCTGACT
ACATATTTTGTGATTAAAATACTAAAAAACTTTGAATTATTTTTGAAATAAATACTTATATTTTT
ATTATATTAAAATAAATTTTATTTTAAATGAAAATTTTA
Found at i:310839 original size:74 final size:74
Alignment explanation
Indices: 310743--310914 Score: 301
Period size: 74 Copynumber: 2.3 Consensus size: 74
310733 TCGCAAAGCA
*
310743 AATCCATCTC-TCAACTCAGGTTTGCTTCCCTGCATTACCATTTCGCTGAAGTTTTCAAGATCAG
1 AATCCATCTCTTTAACTCAGGTTTGCTTCCCTGCATTACCATTTCGCTGAAGTTTTCAAGATCAG
310807 AGGCCACGC
66 AGGCCACGC
* * *
310816 AATCCATCTCTTTAACTCAGGTTTGCTTCCCTGTATTACCATTTCGTTGAAGTTTTCAAGATCTG
1 AATCCATCTCTTTAACTCAGGTTTGCTTCCCTGCATTACCATTTCGCTGAAGTTTTCAAGATCAG
310881 AGGCCACGC
66 AGGCCACGC
310890 AATCCATCTCTTTAACTCAGGTTTG
1 AATCCATCTCTTTAACTCAGGTTTG
310915 TTTCATGTCC
Statistics
Matches: 94, Mismatches: 4, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
73 10 0.11
74 84 0.89
ACGTcount: A:0.23, C:0.27, G:0.16, T:0.34
Consensus pattern (74 bp):
AATCCATCTCTTTAACTCAGGTTTGCTTCCCTGCATTACCATTTCGCTGAAGTTTTCAAGATCAG
AGGCCACGC
Found at i:311151 original size:68 final size:68
Alignment explanation
Indices: 311065--311195 Score: 201
Period size: 68 Copynumber: 1.9 Consensus size: 68
311055 TTTTTTAGTT
* * * *
311065 TAGGGTTTAGAGTAACCTTGTTTTAGTTTGGCTGTCGTTCT-AATTAACCCATTTGATTTTTGGG
1 TAGGGTTTAGAGTAACCTTATTCTAGTTTGGCTATCGTT-TAAAGTAACCCATTTGATTTTTGGG
311129 AGTG
65 AGTG
*
311133 TAGGGTTTAGAGTAACCTTATTCTAGTTTGGGTATCGTTTAAAGTAACCCATTTGATTTTTGG
1 TAGGGTTTAGAGTAACCTTATTCTAGTTTGGCTATCGTTTAAAGTAACCCATTTGATTTTTGG
311196 ATATGTGATT
Statistics
Matches: 57, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
67 1 0.02
68 56 0.98
ACGTcount: A:0.21, C:0.11, G:0.24, T:0.44
Consensus pattern (68 bp):
TAGGGTTTAGAGTAACCTTATTCTAGTTTGGCTATCGTTTAAAGTAACCCATTTGATTTTTGGGA
GTG
Found at i:315326 original size:16 final size:16
Alignment explanation
Indices: 315307--315340 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
315297 GAATTTTAAT
*
315307 TAATTATATTAATAAA
1 TAATTATACTAATAAA
315323 TAATTATACTAATAAA
1 TAATTATACTAATAAA
315339 TA
1 TA
315341 TTAGGTGAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.56, C:0.03, G:0.00, T:0.41
Consensus pattern (16 bp):
TAATTATACTAATAAA
Found at i:315567 original size:15 final size:15
Alignment explanation
Indices: 315547--315584 Score: 51
Period size: 14 Copynumber: 2.5 Consensus size: 15
315537 TATAAAGTTA
*
315547 TAATTTTTTATTTAT
1 TAATTTTTTAATTAT
315562 TAA-TTTTTAATTAT
1 TAATTTTTTAATTAT
315576 TATATTTTT
1 TA-ATTTTT
315585 AAAAATATAT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
14 12 0.60
15 4 0.20
16 4 0.20
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (15 bp):
TAATTTTTTAATTAT
Found at i:315568 original size:14 final size:15
Alignment explanation
Indices: 315551--315586 Score: 56
Period size: 14 Copynumber: 2.5 Consensus size: 15
315541 AAGTTATAAT
*
315551 TTTTTATTTATTA-A
1 TTTTTAATTATTATA
315565 TTTTTAATTATTATA
1 TTTTTAATTATTATA
315580 TTTTTAA
1 TTTTTAA
315587 AAATATATGC
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
14 12 0.60
15 8 0.40
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (15 bp):
TTTTTAATTATTATA
Found at i:325565 original size:32 final size:33
Alignment explanation
Indices: 325506--325567 Score: 85
Period size: 33 Copynumber: 1.9 Consensus size: 33
325496 CGTATTTATT
325506 ATTATAAAAAAATAATAATTAATATTTTAACAA
1 ATTATAAAAAAATAATAATTAATATTTTAACAA
325539 ATTATAAAATAAAATAA-AA-TAA-ATTTTAA
1 ATTAT-AAA-AAAATAATAATTAATATTTTAA
325568 AACTATCAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
32 7 0.26
33 8 0.30
34 5 0.19
35 7 0.26
ACGTcount: A:0.63, C:0.02, G:0.00, T:0.35
Consensus pattern (33 bp):
ATTATAAAAAAATAATAATTAATATTTTAACAA
Found at i:327061 original size:16 final size:17
Alignment explanation
Indices: 327028--327061 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
327018 AGTAAAAAAA
*
327028 TTAATTTTATATATATT
1 TTAATTTTATAAATATT
327045 TTAATTTT-TAAATATT
1 TTAATTTTATAAATATT
327061 T
1 T
327062 ATCTATAATC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 8 0.50
17 8 0.50
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (17 bp):
TTAATTTTATAAATATT
Found at i:327176 original size:139 final size:143
Alignment explanation
Indices: 327025--327305 Score: 335
Period size: 139 Copynumber: 2.0 Consensus size: 143
327015 ATTAGTAAAA
* * **
327025 AAATTAATTTTATATATATTTTAATTTTTAAATATTTATCTATAATCGA-T-GATTTAAATTTTT
1 AAATTAATTTTATATATA-TAT-ATTTTTAAAAAAATATCTATAATCGATTAGATTTAAATTTTT
** *
327088 AATATTTTAATTTTATATTAAAAA-TAATGCTATTAAGTCAAATG--AATATTTTATTAATTA-T
64 AATATGGTAATTTTATATTAAAAATTAA-ACTATTAAGTCAAATGTAAAT-TTTTATTAATTATT
327149 -ATT-TATTTAATATTC
127 AATTATATTTAATATTC
* * * * * * *
327164 AAATTGATTTTATCTATATATATTTTTAAAAAAATATTTATAGTTGATTATATTTGAATTTTTAA
1 AAATTAATTTTATATATATATATTTTTAAAAAAATATCTATAATCGATTAGATTTAAATTTTTAA
*
327229 TATGGTAATTTTATATTAAAAATTAAACTATTGAGTCAAATGTAAATTTTTATTAATTATTAATT
66 TATGGTAATTTTATATTAAAAATTAAACTATTAAGTCAAATGTAAATTTTTATTAATTATTAATT
327294 ATATTTAATATT
131 ATATTTAATATT
327306 TATTTAATTT
Statistics
Matches: 119, Mismatches: 15, Indels: 12
0.82 0.10 0.08
Matches are distributed among these distances:
137 20 0.17
138 3 0.03
139 63 0.53
140 15 0.13
141 4 0.03
142 3 0.03
143 11 0.09
ACGTcount: A:0.41, C:0.03, G:0.05, T:0.52
Consensus pattern (143 bp):
AAATTAATTTTATATATATATATTTTTAAAAAAATATCTATAATCGATTAGATTTAAATTTTTAA
TATGGTAATTTTATATTAAAAATTAAACTATTAAGTCAAATGTAAATTTTTATTAATTATTAATT
ATATTTAATATTC
Found at i:327328 original size:139 final size:139
Alignment explanation
Indices: 327076--327343 Score: 325
Period size: 139 Copynumber: 1.9 Consensus size: 139
327066 ATAATCGATG
** *
327076 ATTTAAATTTTTAATATTTTAATTTTATATTAAAAATAATGCTATTAAGTCAAATGAATATTTTA
1 ATTTAAATTTTTAATATGGTAATTTTATATTAAAAATAATACTATTAAGTCAAATGAATATTTTA
* **
327141 TTAATTATATTTATTTAATATTCAAATTGATTTTATCTATATATA-TTTTTAAAAAAATATTTAT
66 TTAATTATATTTATTTAATATTCAAATTAATTTTATAAATATATATTTTTTAAAAAAAT-TTTAT
327205 AGTTGATTAT
130 AGTTGATTAT
* *
327215 ATTTGAATTTTTAATATGGTAATTTTATATTAAAAATTAA-ACTATTGAGTCAAATGTAA-ATTT
1 ATTTAAATTTTTAATATGGTAATTTTATATTAAAAA-TAATACTATTAAGTCAAATG-AATA-TT
* * *
327278 TTATTAATTATTAATTATATTTAATATT-TATTTAATTTTA-AAAT-TA-ATTTTTTTAAAAAAT
63 TTATTAATTA-T-ATT-TATTTAATATTCAAATTAATTTTATAAATATATATTTTTTAAAAAAAT
327339 TTTAT
125 TTTAT
327344 CAAATCAATT
Statistics
Matches: 111, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
139 54 0.49
140 31 0.28
141 3 0.03
142 12 0.11
143 11 0.10
ACGTcount: A:0.41, C:0.02, G:0.04, T:0.52
Consensus pattern (139 bp):
ATTTAAATTTTTAATATGGTAATTTTATATTAAAAATAATACTATTAAGTCAAATGAATATTTTA
TTAATTATATTTATTTAATATTCAAATTAATTTTATAAATATATATTTTTTAAAAAAATTTTATA
GTTGATTAT
Found at i:328157 original size:33 final size:33
Alignment explanation
Indices: 328120--328184 Score: 94
Period size: 33 Copynumber: 2.0 Consensus size: 33
328110 TTCAACGATT
328120 TGTATCGATACATAAAATGTTGTATCGATACAA
1 TGTATCGATACATAAAATGTTGTATCGATACAA
*** *
328153 TGTATCGATACATATTTTTTTGTATCGATACA
1 TGTATCGATACATAAAATGTTGTATCGATACA
328185 TTTTAAGCTA
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 28 1.00
ACGTcount: A:0.34, C:0.12, G:0.14, T:0.40
Consensus pattern (33 bp):
TGTATCGATACATAAAATGTTGTATCGATACAA
Found at i:328158 original size:13 final size:13
Alignment explanation
Indices: 328140--328164 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
328130 CATAAAATGT
328140 TGTATCGATACAA
1 TGTATCGATACAA
328153 TGTATCGATACA
1 TGTATCGATACA
328165 TATTTTTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:328317 original size:52 final size:52
Alignment explanation
Indices: 328261--328385 Score: 214
Period size: 52 Copynumber: 2.4 Consensus size: 52
328251 CATTGATCTT
*
328261 TGTATCGATACATGCACGCAAATTTGCCCAGATGTATCGATACATTATAAAA
1 TGTATCGATACATGCAAGCAAATTTGCCCAGATGTATCGATACATTATAAAA
* *
328313 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACATTATTAAA
1 TGTATCGATACATGCAAGCAAATTTGCCCAGATGTATCGATACATTATAAAA
*
328365 TGTATAGATACATGCAAGCAA
1 TGTATCGATACATGCAAGCAA
328386 CTTTTCATAT
Statistics
Matches: 69, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
52 69 1.00
ACGTcount: A:0.37, C:0.18, G:0.17, T:0.29
Consensus pattern (52 bp):
TGTATCGATACATGCAAGCAAATTTGCCCAGATGTATCGATACATTATAAAA
Found at i:332349 original size:14 final size:14
Alignment explanation
Indices: 332317--332366 Score: 61
Period size: 14 Copynumber: 3.7 Consensus size: 14
332307 AATTATATCG
332317 TAAAAATT-AA-TA
1 TAAAAATTAAATTA
*
332329 AAAAAATTAAATTA
1 TAAAAATTAAATTA
332343 TAAAAATTAAACTTA
1 TAAAAATTAAA-TTA
332358 -AAAAATTAA
1 TAAAAATTAA
332367 GTTAAAATTT
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
12 7 0.21
13 2 0.06
14 21 0.64
15 3 0.09
ACGTcount: A:0.68, C:0.02, G:0.00, T:0.30
Consensus pattern (14 bp):
TAAAAATTAAATTA
Found at i:332371 original size:13 final size:12
Alignment explanation
Indices: 332318--332373 Score: 58
Period size: 14 Copynumber: 4.2 Consensus size: 12
332308 ATTATATCGT
*
332318 AAAAATTAATAA
1 AAAAATTAATTA
332330 AAAAATTAAATTA
1 AAAAATT-AATTA
332343 TAAAAATTAAACTTA
1 -AAAAATT-AA-TTA
332358 AAAAATTAAGTTA
1 AAAAATTAA-TTA
332371 AAA
1 AAA
332374 TTTATATGAT
Statistics
Matches: 39, Mismatches: 2, Indels: 5
0.85 0.04 0.11
Matches are distributed among these distances:
12 7 0.18
13 12 0.31
14 17 0.44
15 3 0.08
ACGTcount: A:0.68, C:0.02, G:0.02, T:0.29
Consensus pattern (12 bp):
AAAAATTAATTA
Found at i:332372 original size:26 final size:26
Alignment explanation
Indices: 332317--332373 Score: 64
Period size: 26 Copynumber: 2.2 Consensus size: 26
332307 AATTATATCG
*
332317 TAAAAATTAATAAAAAAATTAAATTA
1 TAAAAATTAATAAAAAAATTAAAGTA
*
332343 TAAAAATTAAACTTAAAAAATT-AAGT-
1 TAAAAATT-AA-TAAAAAAATTAAAGTA
332369 TAAAA
1 TAAAA
332374 TTTATATGAT
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
26 13 0.48
27 5 0.19
28 9 0.33
ACGTcount: A:0.67, C:0.02, G:0.02, T:0.30
Consensus pattern (26 bp):
TAAAAATTAATAAAAAAATTAAAGTA
Found at i:333068 original size:165 final size:163
Alignment explanation
Indices: 332565--333193 Score: 573
Period size: 164 Copynumber: 3.8 Consensus size: 163
332555 GTTTAACAGC
* * * * * * * *
332565 AATATTAGATAAATTTTAAAAATTAAAAACTAAGAATAATTTTTTCAAAAATATTTACGGAGTAA
1 AATATTTGATAGATTTTAAAAATTAAAAACCAAGAAAAATCTCTCCAAAAAT-TTTACGGAGTAG
* * * * *
332630 AAAACTCTGTTTTTTAGAAAT-AGGGAAATTTCGAAGAAAAAATTCAAAACTCATGAAAATAAAT
65 AAAACTCTGTATTTCAAAAATAAGAG-AATTTC-AAGAAAAAATTAAAAACTCATGAAAATAAAT
* * * * * * *
332694 TAGTTTTTCAAAATTAATTTAATGTAAATCAAATGAT
128 GAATTTTTGAAAACTGATTTAATATAAAT-AAATAAT
* * * *
332731 AATATTTGAT-GAATTTTAAAAATTAAAAACCAAGAAAAATCCTCTCGAAAACTTTTAAGGAGCA
1 AATATTTGATAG-ATTTTAAAAATTAAAAACCAAGAAAAAT-CTCTCCAAAAATTTTACGGAGTA
* * * * * *
332795 GAAAACT-TCGTATTTCAAAAATCAA-AAAATCTT-TA-AAAAAATAAAAAACTTATGAAGATGA
64 GAAAACTCT-GTATTTCAAAAAT-AAGAGAAT-TTCAAGAAAAAATTAAAAACTCATGAAAATAA
* *
332856 GTGAATTTTTGAAAAGTGATTTAATATAAAATAAATAAT
126 ATGAATTTTTGAAAACTGATTTAATAT-AAATAAATAAT
*
332895 AATATTTGATAGATTTTAAAAATTAAGAACCAAGAAAAATCTCTCCAAAAAATTTTACGGAGTAG
1 AATATTTGATAGATTTTAAAAATTAAAAACCAAGAAAAATCTCTCC-AAAAATTTTACGGAGTAG
332960 AAAACTCTGTATTTCAAAAATAAGAGAATTTCAAGAAAAAATTAAAAACTCATGAAAATAAATGA
65 AAAACTCTGTATTTCAAAAATAAGAGAATTTCAAGAAAAAATTAAAAACTCATGAAAATAAATGA
333025 ATTTTTGAAAACTGATTTAATATGAAATAAATAAT
130 ATTTTTGAAAACTGATTTAATAT-AAATAAATAAT
* * * * * ** ** *
333060 GATATTTGATGGATTTTAAAAATTTTAAACCCATG-AAAATCCTCTTGAAAAA-TTTATTGAGAA
1 AATATTTGATAGATTTTAAAAA-TTAAAAACCAAGAAAAAT-CTCTCCAAAAATTTTACGGAGTA
* * * *
333123 GAAAACTCGGTTATTT--AAAATAGGAAGAATTTCAA-AAGAAAATCAATAACTCA--AAAATAG
64 GAAAACTCTG-TATTTCAAAAATAAG-AGAATTTCAAGAA-AAAATTAAAAACTCATGAAAATA-
*
333183 AAGGAATTTTT
125 AATGAATTTTT
333194 TCAAAAATAA
Statistics
Matches: 383, Mismatches: 61, Indels: 41
0.79 0.13 0.08
Matches are distributed among these distances:
162 6 0.02
163 28 0.07
164 163 0.43
165 101 0.26
166 75 0.20
167 9 0.02
168 1 0.00
ACGTcount: A:0.50, C:0.08, G:0.11, T:0.31
Consensus pattern (163 bp):
AATATTTGATAGATTTTAAAAATTAAAAACCAAGAAAAATCTCTCCAAAAATTTTACGGAGTAGA
AAACTCTGTATTTCAAAAATAAGAGAATTTCAAGAAAAAATTAAAAACTCATGAAAATAAATGAA
TTTTTGAAAACTGATTTAATATAAATAAATAAT
Found at i:335359 original size:5 final size:5
Alignment explanation
Indices: 335344--335374 Score: 53
Period size: 5 Copynumber: 6.0 Consensus size: 5
335334 TAAAATTTTT
335344 ATTTAA ATTTA ATTTA ATTTA ATTTA ATTTA
1 ATTT-A ATTTA ATTTA ATTTA ATTTA ATTTA
335375 TATTAAAAAT
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
5 21 0.84
6 4 0.16
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (5 bp):
ATTTA
Found at i:335435 original size:32 final size:32
Alignment explanation
Indices: 335393--335463 Score: 81
Period size: 32 Copynumber: 2.2 Consensus size: 32
335383 ATATTAAAAT
* *
335393 TTTTAAAATT-ATTTTATATTAATATTTTTATA
1 TTTTAAAATTAAATTTA-AATAATATTTTTATA
* *
335425 TTTTATAATTAAATTTAAATAATTTTTTTATA
1 TTTTAAAATTAAATTTAAATAATATTTTTATA
*
335457 TATTAAA
1 TTTTAAA
335464 TAATAATTTA
Statistics
Matches: 32, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
32 27 0.84
33 5 0.16
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (32 bp):
TTTTAAAATTAAATTTAAATAATATTTTTATA
Found at i:335468 original size:23 final size:24
Alignment explanation
Indices: 335425--335472 Score: 64
Period size: 23 Copynumber: 2.0 Consensus size: 24
335415 TATTTTTATA
335425 TTTTATAATTAAATTTAAATAATTT
1 TTTTATAATTAAA-TTAAATAATTT
335450 TTTTATATATTAAA-T-AATAATTT
1 TTTTATA-ATTAAATTAAATAATTT
335473 ATGTGAAAAG
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
23 8 0.36
24 1 0.05
25 7 0.32
26 6 0.27
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (24 bp):
TTTTATAATTAAATTAAATAATTT
Found at i:335472 original size:32 final size:32
Alignment explanation
Indices: 335412--335473 Score: 81
Period size: 32 Copynumber: 1.9 Consensus size: 32
335402 TATTTTATAT
* *
335412 TAATATTTTTATATTTTATAATTAAATTTAAA
1 TAATATTTTTATATATTATAATAAAATTTAAA
*
335444 TAATTTTTTTATATATTA-AATAATAATTTA
1 TAATATTTTTATATATTATAATAA-AATTTA
335474 TGTGAAAAGC
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
31 4 0.15
32 22 0.85
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (32 bp):
TAATATTTTTATATATTATAATAAAATTTAAA
Found at i:338790 original size:22 final size:22
Alignment explanation
Indices: 338760--338804 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 22
338750 ATTCAAAAGT
*
338760 ATAACAAAAGTCATTTG-GATGA
1 ATAACAAAA-TCAGTTGAGATGA
*
338782 ATAATAAAATCAGTTGAGATGA
1 ATAACAAAATCAGTTGAGATGA
338804 A
1 A
338805 ATTAAAAATT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 6 0.30
22 14 0.70
ACGTcount: A:0.49, C:0.07, G:0.18, T:0.27
Consensus pattern (22 bp):
ATAACAAAATCAGTTGAGATGA
Found at i:339001 original size:44 final size:42
Alignment explanation
Indices: 338940--339022 Score: 107
Period size: 44 Copynumber: 1.9 Consensus size: 42
338930 TAAAAATATA
338940 TTAATAAATTATTTTTATATATTT-TTAATAATATATTTTAAAAT
1 TTAATAAATTATTTTTATATATTTGTT--TAA-ATATTTTAAAAT
*
338984 TTAATATA-TATTATTTATATATTTGTTTAAATATTTTAA
1 TTAATAAATTATT-TTTATATATTTGTTTAAATATTTTAA
339023 TTAATTAACT
Statistics
Matches: 36, Mismatches: 1, Indels: 6
0.84 0.02 0.14
Matches are distributed among these distances:
42 9 0.25
43 7 0.19
44 18 0.50
45 2 0.06
ACGTcount: A:0.41, C:0.00, G:0.01, T:0.58
Consensus pattern (42 bp):
TTAATAAATTATTTTTATATATTTGTTTAAATATTTTAAAAT
Found at i:339013 original size:33 final size:34
Alignment explanation
Indices: 338928--339019 Score: 84
Period size: 33 Copynumber: 2.7 Consensus size: 34
338918 AAGATATTAA
* * *
338928 TTTAAAAATATATTAATAAATTATTT-TTATATATT
1 TTTAATAATATATT-TTAAA-TATTTAATATATATT
338963 TTTAATAATATATTTTAAA-ATTTAATATATATT
1 TTTAATAATATATTTTAAATATTTAATATATATT
*
338996 ATTT-AT-ATATTTGTTTAAATATTT
1 -TTTAATAATATAT-TTTAAATATTT
339020 TAATTAATTA
Statistics
Matches: 49, Mismatches: 4, Indels: 9
0.79 0.06 0.15
Matches are distributed among these distances:
32 9 0.18
33 16 0.33
34 11 0.22
35 13 0.27
ACGTcount: A:0.42, C:0.00, G:0.01, T:0.57
Consensus pattern (34 bp):
TTTAATAATATATTTTAAATATTTAATATATATT
Found at i:339103 original size:30 final size:30
Alignment explanation
Indices: 339069--339125 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
339059 TTTATTATAT
*
339069 CAAATACAAATATAAATAT-AAATTTTTTTA
1 CAAATA-AAATAAAAATATCAAATTTTTTTA
*
339099 CAAATAAAATAAAAATTTCAAATTTTT
1 CAAATAAAATAAAAATATCAAATTTTT
339126 AAATACAATA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
29 10 0.42
30 14 0.58
ACGTcount: A:0.54, C:0.07, G:0.00, T:0.39
Consensus pattern (30 bp):
CAAATAAAATAAAAATATCAAATTTTTTTA
Found at i:339157 original size:50 final size:50
Alignment explanation
Indices: 339100--339197 Score: 146
Period size: 50 Copynumber: 2.0 Consensus size: 50
339090 ATTTTTTTAC
*
339100 AAATAAAATAAAAATTTCAAATTTT-TAAAT-ACAATAAATTTAAAATTTTT
1 AAAT-AAA-AAAAATTTCAAATTTTATAAATAAAAATAAATTTAAAATTTTT
*
339150 AAATAAAAATAATTTCAAATTTTATAAATAAAAATAAATTTAAAATTT
1 AAATAAAAAAAATTTCAAATTTTATAAATAAAAATAAATTTAAAATTT
339198 ACATAATTTG
Statistics
Matches: 44, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
48 15 0.34
49 8 0.18
50 21 0.48
ACGTcount: A:0.58, C:0.03, G:0.00, T:0.39
Consensus pattern (50 bp):
AAATAAAAAAAATTTCAAATTTTATAAATAAAAATAAATTTAAAATTTTT
Found at i:339160 original size:25 final size:25
Alignment explanation
Indices: 339100--339197 Score: 128
Period size: 24 Copynumber: 3.9 Consensus size: 25
339090 ATTTTTTTAC
* *
339100 AAATAAAATAAAAATTTCAAATTTTT
1 AAATAAAA-ATAAATTTAAAATTTTT
*
339126 AAAT-ACAATAAATTTAAAATTTTT
1 AAATAAAAATAAATTTAAAATTTTT
*
339150 AAATAAAAAT-AATTTCAAATTTTAT
1 AAATAAAAATAAATTTAAAATTTT-T
339175 AAATAAAAATAAATTTAAAATTT
1 AAATAAAAATAAATTTAAAATTT
339198 ACATAATTTG
Statistics
Matches: 63, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
24 31 0.49
25 17 0.27
26 15 0.24
ACGTcount: A:0.58, C:0.03, G:0.00, T:0.39
Consensus pattern (25 bp):
AAATAAAAATAAATTTAAAATTTTT
Found at i:339198 original size:25 final size:25
Alignment explanation
Indices: 339095--339198 Score: 113
Period size: 25 Copynumber: 4.2 Consensus size: 25
339085 TATAAATTTT
* * *
339095 TTTACAAATAAAATAAAAATTTCAAA
1 TTTATAAATAAAA-ATAAATTTAAAA
* *
339121 TTTTTAAAT-ACAATAAATTTAAAA
1 TTTATAAATAAAAATAAATTTAAAA
* *
339145 TTTTTAAATAAAAAT-AATTTCAAAT
1 TTTATAAATAAAAATAAATTT-AAAA
339170 TTTATAAATAAAAATAAATTTAAAA
1 TTTATAAATAAAAATAAATTTAAAA
339195 TTTA
1 TTTA
339199 CATAATTTGT
Statistics
Matches: 66, Mismatches: 9, Indels: 7
0.80 0.11 0.09
Matches are distributed among these distances:
24 24 0.36
25 30 0.45
26 12 0.18
ACGTcount: A:0.57, C:0.04, G:0.00, T:0.39
Consensus pattern (25 bp):
TTTATAAATAAAAATAAATTTAAAA
Found at i:339684 original size:14 final size:15
Alignment explanation
Indices: 339665--339694 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
339655 TTTTTTGATT
339665 TTTTTAA-AATTTAA
1 TTTTTAATAATTTAA
339679 TTTTTAATAATTTAA
1 TTTTTAATAATTTAA
339694 T
1 T
339695 AATTTTTTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 7 0.47
15 8 0.53
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (15 bp):
TTTTTAATAATTTAA
Found at i:339785 original size:22 final size:22
Alignment explanation
Indices: 339753--339804 Score: 72
Period size: 20 Copynumber: 2.5 Consensus size: 22
339743 ATTTACACTA
*
339753 TAATATTATATATATTTATTTT
1 TAATATGATATATATTTATTTT
*
339775 TTATATG--ATATATTTATTTT
1 TAATATGATATATATTTATTTT
339795 TAATATGATA
1 TAATATGATA
339805 AAAATTATAT
Statistics
Matches: 25, Mismatches: 3, Indels: 4
0.78 0.09 0.12
Matches are distributed among these distances:
20 19 0.76
22 6 0.24
ACGTcount: A:0.37, C:0.00, G:0.04, T:0.60
Consensus pattern (22 bp):
TAATATGATATATATTTATTTT
Found at i:339787 original size:20 final size:20
Alignment explanation
Indices: 339762--339804 Score: 77
Period size: 20 Copynumber: 2.1 Consensus size: 20
339752 ATAATATTAT
*
339762 ATATATTTATTTTTTATATG
1 ATATATTTATTTTTAATATG
339782 ATATATTTATTTTTAATATG
1 ATATATTTATTTTTAATATG
339802 ATA
1 ATA
339805 AAAATTATAT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.35, C:0.00, G:0.05, T:0.60
Consensus pattern (20 bp):
ATATATTTATTTTTAATATG
Found at i:340114 original size:24 final size:23
Alignment explanation
Indices: 340066--340114 Score: 55
Period size: 24 Copynumber: 2.1 Consensus size: 23
340056 ATTTTATGTG
* *
340066 TTTTTAAAATATTTAATTATATA
1 TTTTTAAAATAATTAATTAAATA
340089 TTTTTATAAATAATTAA-TAAAGTA
1 TTTTTA-AAATAATTAATTAAA-TA
340113 TT
1 TT
340115 ACCATGTAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
23 9 0.41
24 13 0.59
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.53
Consensus pattern (23 bp):
TTTTTAAAATAATTAATTAAATA
Found at i:340663 original size:2 final size:2
Alignment explanation
Indices: 340656--340687 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
340646 AAAGTACTAA
340656 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
340688 TGGTCGGCCT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:342808 original size:18 final size:18
Alignment explanation
Indices: 342773--342818 Score: 67
Period size: 18 Copynumber: 2.6 Consensus size: 18
342763 TACCTTGCTG
*
342773 TTTTCTCT-TTTTTTTCT
1 TTTTCTCTCTTTCTTTCT
342790 TTTTCTCTCTTTCTTTCT
1 TTTTCTCTCTTTCTTTCT
*
342808 TTTTCTTTCTT
1 TTTTCTCTCTT
342819 CTCCATAAAC
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
17 8 0.31
18 18 0.69
ACGTcount: A:0.00, C:0.22, G:0.00, T:0.78
Consensus pattern (18 bp):
TTTTCTCTCTTTCTTTCT
Found at i:343179 original size:24 final size:24
Alignment explanation
Indices: 343146--343192 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 24
343136 TCATTCATTA
* *
343146 ATTATAAAAATTATATTATAAATG
1 ATTATAAAAAATATATTACAAATG
*
343170 ATTATTAAAAATATATTACAAAT
1 ATTATAAAAAATATATTACAAAT
343193 AATGAACTAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.55, C:0.02, G:0.02, T:0.40
Consensus pattern (24 bp):
ATTATAAAAAATATATTACAAATG
Found at i:352576 original size:24 final size:25
Alignment explanation
Indices: 352509--352610 Score: 111
Period size: 26 Copynumber: 4.0 Consensus size: 25
352499 TTTACAAATA
352509 AAATAAAAATAAAAATTTCAAAA-TTTT
1 AAATAAAAAT--AAA-TTCAAAATTTTT
352536 AAATAAACAATAAATTCAAAATTTTT
1 AAATAAA-AATAAATTCAAAATTTTT
*
352562 AAAT-AAAATAAATTC-AAATTATAT
1 AAATAAAAATAAATTCAAAATT-TTT
*
352586 AAATAAAAAATAAATTTAAAATTTT
1 AAAT-AAAAATAAATTCAAAATTTT
352611 CATAATTTAT
Statistics
Matches: 66, Mismatches: 3, Indels: 13
0.80 0.04 0.16
Matches are distributed among these distances:
23 5 0.08
24 15 0.23
25 9 0.14
26 22 0.33
27 12 0.18
28 3 0.05
ACGTcount: A:0.62, C:0.04, G:0.00, T:0.34
Consensus pattern (25 bp):
AAATAAAAATAAATTCAAAATTTTT
Found at i:352626 original size:35 final size:35
Alignment explanation
Indices: 352574--352645 Score: 92
Period size: 35 Copynumber: 2.1 Consensus size: 35
352564 ATAAAATAAA
*
352574 TTCAAATTATATAAATAAAAAATAAATTTAAAATT
1 TTCAAATTATATAAATAAAAAATAAATTCAAAATT
* **
352609 TTCATAATT-TATTAATAAAACTTAAATTCAAAATT
1 TTCA-AATTATATAAATAAAAAATAAATTCAAAATT
352644 TT
1 TT
352646 TAGAGAAAAA
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
35 28 0.88
36 4 0.12
ACGTcount: A:0.53, C:0.06, G:0.00, T:0.42
Consensus pattern (35 bp):
TTCAAATTATATAAATAAAAAATAAATTCAAAATT
Found at i:353231 original size:18 final size:19
Alignment explanation
Indices: 353208--353250 Score: 56
Period size: 17 Copynumber: 2.4 Consensus size: 19
353198 CGTTTGACTT
353208 ATTTTTTAAA-T-AAGTCTC
1 ATTTTTTAAACTCAAG-CTC
353226 A-TTTTTAAACTCAAGCTC
1 ATTTTTTAAACTCAAGCTC
353244 ATTTTTT
1 ATTTTTT
353251 TAGTTTAATA
Statistics
Matches: 22, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
17 8 0.36
18 6 0.27
19 8 0.36
ACGTcount: A:0.30, C:0.14, G:0.05, T:0.51
Consensus pattern (19 bp):
ATTTTTTAAACTCAAGCTC
Found at i:353232 original size:17 final size:18
Alignment explanation
Indices: 353210--353249 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
353200 TTTGACTTAT
353210 TTTTTAAA-T-AAGTCTCA
1 TTTTTAAACTCAAG-CTCA
353227 TTTTTAAACTCAAGCTCA
1 TTTTTAAACTCAAGCTCA
353245 TTTTT
1 TTTTT
353250 TTAGTTTAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
17 8 0.38
18 10 0.48
19 3 0.14
ACGTcount: A:0.30, C:0.15, G:0.05, T:0.50
Consensus pattern (18 bp):
TTTTTAAACTCAAGCTCA
Found at i:356887 original size:18 final size:18
Alignment explanation
Indices: 356849--356910 Score: 83
Period size: 18 Copynumber: 3.5 Consensus size: 18
356839 TATTTTTACA
*
356849 TTTTTAA-TTTTC-AAAT
1 TTTTTAATTTTTCTAATT
356865 TTTTTAATTTTTCTAATT
1 TTTTTAATTTTTCTAATT
*
356883 TTTTTAATTTTTTTAATTT
1 TTTTTAATTTTTCTAA-TT
356902 TTTTTAATT
1 TTTTTAATT
356911 ATTAAATGTC
Statistics
Matches: 41, Mismatches: 2, Indels: 3
0.89 0.04 0.07
Matches are distributed among these distances:
16 7 0.17
17 5 0.12
18 18 0.44
19 11 0.27
ACGTcount: A:0.24, C:0.03, G:0.00, T:0.73
Consensus pattern (18 bp):
TTTTTAATTTTTCTAATT
Found at i:356893 original size:8 final size:8
Alignment explanation
Indices: 356849--356904 Score: 67
Period size: 8 Copynumber: 6.6 Consensus size: 8
356839 TATTTTTACA
356849 TTTTTAAT
1 TTTTTAAT
**
356857 TTTCAAAT
1 TTTTTAAT
356865 TTTTTAAT
1 TTTTTAAT
356873 TTTTCTAATT
1 TTTT-TAA-T
356883 TTTTTAATT
1 TTTTTAA-T
356892 TTTTTAAT
1 TTTTTAAT
356900 TTTTT
1 TTTTT
356905 TTAATTATTA
Statistics
Matches: 42, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
8 22 0.52
9 15 0.36
10 5 0.12
ACGTcount: A:0.23, C:0.04, G:0.00, T:0.73
Consensus pattern (8 bp):
TTTTTAAT
Found at i:356905 original size:9 final size:9
Alignment explanation
Indices: 356864--356910 Score: 76
Period size: 9 Copynumber: 5.1 Consensus size: 9
356854 AATTTTCAAA
356864 TTTTTTAAT
1 TTTTTTAAT
*
356873 TTTTCTAAT
1 TTTTTTAAT
356882 TTTTTTAAT
1 TTTTTTAAT
356891 TTTTTTAATT
1 TTTTTTAA-T
356901 TTTTTTAAT
1 TTTTTTAAT
356910 T
1 T
356911 ATTAAATGTC
Statistics
Matches: 35, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
9 26 0.74
10 9 0.26
ACGTcount: A:0.21, C:0.02, G:0.00, T:0.77
Consensus pattern (9 bp):
TTTTTTAAT
Found at i:358509 original size:34 final size:34
Alignment explanation
Indices: 358421--358509 Score: 81
Period size: 34 Copynumber: 2.5 Consensus size: 34
358411 AAAAATGATA
* * *
358421 TTTATTTTTTATATTATTAAATTAAGATTATATTTT
1 TTTATTTTTTA-ATT-TTAAAATAAAAATATATTTT
* * *
358457 TTAATGTTATTAAATTTAAAATAAAAATA-ATTTT
1 TTTAT-TTTTTAATTTTAAAATAAAAATATATTTT
358491 TATTATTTTTTAATTTTAA
1 T-TTATTTTTTAATTTTAA
358510 TATTTTGATA
Statistics
Matches: 42, Mismatches: 9, Indels: 6
0.74 0.16 0.11
Matches are distributed among these distances:
34 17 0.40
35 14 0.33
36 6 0.14
37 5 0.12
ACGTcount: A:0.39, C:0.00, G:0.02, T:0.58
Consensus pattern (34 bp):
TTTATTTTTTAATTTTAAAATAAAAATATATTTT
Found at i:363990 original size:14 final size:13
Alignment explanation
Indices: 363970--364010 Score: 55
Period size: 13 Copynumber: 3.1 Consensus size: 13
363960 AACAAATTTT
363970 ATTTTTTTACTTA
1 ATTTTTTTACTTA
*
363983 ATTTTTTTAATTTA
1 ATTTTTTT-ACTTA
*
363997 ATATTTTTACTTA
1 ATTTTTTTACTTA
364010 A
1 A
364011 ATATCTCAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
13 13 0.54
14 11 0.46
ACGTcount: A:0.29, C:0.05, G:0.00, T:0.66
Consensus pattern (13 bp):
ATTTTTTTACTTA
Found at i:364684 original size:17 final size:17
Alignment explanation
Indices: 364655--364704 Score: 66
Period size: 17 Copynumber: 2.9 Consensus size: 17
364645 TCTAATATTC
364655 AATTTATTTTTTAAATA
1 AATTTATTTTTTAAATA
**
364672 AATATTA-TTTTTATTTA
1 AAT-TTATTTTTTAAATA
364689 AATTTATTTTTTAAAT
1 AATTTATTTTTTAAAT
364705 TTAATATTTT
Statistics
Matches: 27, Mismatches: 4, Indels: 4
0.77 0.11 0.11
Matches are distributed among these distances:
16 3 0.11
17 21 0.78
18 3 0.11
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (17 bp):
AATTTATTTTTTAAATA
Found at i:366824 original size:22 final size:22
Alignment explanation
Indices: 366777--366818 Score: 68
Period size: 22 Copynumber: 1.9 Consensus size: 22
366767 TAAATCTAAC
366777 ATATAATTTATTTTTTAAATAG
1 ATATAATTTATTTTTTAAATAG
366799 ATATAATTT-TTTATTTAAAT
1 ATATAATTTATTT-TTTAAAT
366819 TTATATTTTA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
21 3 0.16
22 16 0.84
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.57
Consensus pattern (22 bp):
ATATAATTTATTTTTTAAATAG
Found at i:366826 original size:19 final size:20
Alignment explanation
Indices: 366811--366850 Score: 57
Period size: 19 Copynumber: 2.1 Consensus size: 20
366801 ATAATTTTTT
366811 ATTTAA-ATTTATATTTTAA
1 ATTTAATATTTATATTTTAA
*
366830 ATTTAATATTTTTA-TTTAA
1 ATTTAATATTTATATTTTAA
366849 AT
1 AT
366851 ATCTCAAATA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
19 13 0.68
20 6 0.32
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (20 bp):
ATTTAATATTTATATTTTAA
Found at i:366848 original size:13 final size:14
Alignment explanation
Indices: 366812--366841 Score: 53
Period size: 13 Copynumber: 2.2 Consensus size: 14
366802 TAATTTTTTA
366812 TTTAAATTT-ATAT
1 TTTAAATTTAATAT
366825 TTTAAATTTAATAT
1 TTTAAATTTAATAT
366839 TTT
1 TTT
366842 TATTTAAATA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 9 0.56
14 7 0.44
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (14 bp):
TTTAAATTTAATAT
Found at i:369368 original size:19 final size:19
Alignment explanation
Indices: 369344--369383 Score: 80
Period size: 19 Copynumber: 2.1 Consensus size: 19
369334 TTCGATGATA
369344 TATATTAGACTAAACGGGT
1 TATATTAGACTAAACGGGT
369363 TATATTAGACTAAACGGGT
1 TATATTAGACTAAACGGGT
369382 TA
1 TA
369384 CTGGCAAAAG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.38, C:0.10, G:0.20, T:0.33
Consensus pattern (19 bp):
TATATTAGACTAAACGGGT
Found at i:371940 original size:23 final size:21
Alignment explanation
Indices: 371914--371966 Score: 61
Period size: 22 Copynumber: 2.4 Consensus size: 21
371904 TTTAAATAAA
*
371914 TTAAAAATAATTAATAATTATTT
1 TTAAAAATAA--AAAAATTATTT
371937 TTAAAAATTAAAAAAATTATTT
1 TTAAAAA-TAAAAAAATTATTT
*
371959 TTTAAAAT
1 TTAAAAAT
371967 TACGTCTTCA
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
21 1 0.04
22 16 0.59
23 7 0.26
24 3 0.11
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (21 bp):
TTAAAAATAAAAAAATTATTT
Found at i:373330 original size:22 final size:22
Alignment explanation
Indices: 373279--373333 Score: 60
Period size: 22 Copynumber: 2.5 Consensus size: 22
373269 AAATATTATT
*
373279 TATTTAAATTTAATTATAAAAA
1 TATTTTAATTTAATTATAAAAA
*
373301 TATATTAATATTAA-TAT-AAAA
1 TATTTTAAT-TTAATTATAAAAA
373322 TAATTTTAATTT
1 T-ATTTTAATTT
373334 TTTTATTAAT
Statistics
Matches: 28, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
21 7 0.25
22 17 0.61
23 4 0.14
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (22 bp):
TATTTTAATTTAATTATAAAAA
Found at i:373798 original size:15 final size:15
Alignment explanation
Indices: 373775--373804 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
373765 CTTTTTTGTC
*
373775 TTTTTTTTATTTTAA
1 TTTTATTTATTTTAA
373790 TTTTATTTATTTTAA
1 TTTTATTTATTTTAA
373805 AAAAATAAAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (15 bp):
TTTTATTTATTTTAA
Found at i:374260 original size:265 final size:254
Alignment explanation
Indices: 373891--374413 Score: 785
Period size: 265 Copynumber: 2.0 Consensus size: 254
373881 GATTGTTTTA
* * * *
373891 ATTTCAAGTGATTTCGGTTTTGAGTTAACACTCGGGTTAATCAAGTTTGAGTCATTTTAAATTTG
1 ATTTCAAATGATTTCGATTTTGAGTTAACACTCGGGTTAATCAAATTTGAATCATTTTAAATTTG
*
373956 AATCATTTTAGATTCAAGTCAATTAGGTTTAACACTCGAATTAATCGAATGGAAGAGACATCCAT
66 AATCATTTTAGATTCAAGTCAATTAAGTTTAACACTCGAATTAATCGAATGGAAGAGACATCCAT
374021 GTCTTACATACTCTTTCCTTTTTTTTTTTGGCTTTTTAAGTTTTATTCGTTTAGTTTTCTTTAAC
131 GTCTTACATACTCTTTCC-TTTTTTTTTT-GCTTTTTAAGTTTTATT-G----G---T-TTTAAC
*
374086 TTAGAAAAAAAATAAAATAAAAGAGATAAAATTCAAGCGAAACTATTTTGAGTATTTAAATTTTC
185 TTAGAAAAAAAATAAAATAAAAGAGATAAAATTCAAACGAAACTATTTTGAGTATTTAAATTTTC
374151 ATATT
250 ATATT
* * *
374156 ATTTCAAATGATTTTGATTTTGAGTTAACATTCGGGTTAATCAAATTTGAATTATTTTAAATTTG
1 ATTTCAAATGATTTCGATTTTGAGTTAACACTCGGGTTAATCAAATTTGAATCATTTTAAATTTG
* * * *
374221 AGTCATTTTAGGTTCAAGTCAATTAAGTTTAATACTCGAATTAATCGAATGGAAGAGACATTCAT
66 AATCATTTTAGATTCAAGTCAATTAAGTTTAACACTCGAATTAATCGAATGGAAGAGACATCCAT
* *
374286 GTCTTACATACTCTTTCCTTTTTTTTTTGCTTTTTAAGTTTTATTGGTTTTAGCTTGGAAAAAAA
131 GTCTTACATACTCTTTCCTTTTTTTTTTGCTTTTTAAGTTTTATTGGTTTTAACTTAGAAAAAAA
* * *
374351 ATAAAATAAAAGAGATGAAATTCAAACTAAATTATTTTGAGTATTTAAATTTTCATATT
196 ATAAAATAAAAGAGATAAAATTCAAACGAAACTATTTTGAGTATTTAAATTTTCATATT
374410 ATTT
1 ATTT
374414 TAAGATCAGA
Statistics
Matches: 240, Mismatches: 18, Indels: 11
0.89 0.07 0.04
Matches are distributed among these distances:
254 74 0.31
255 1 0.00
258 1 0.00
262 1 0.00
263 17 0.07
264 10 0.04
265 136 0.57
ACGTcount: A:0.33, C:0.10, G:0.13, T:0.43
Consensus pattern (254 bp):
ATTTCAAATGATTTCGATTTTGAGTTAACACTCGGGTTAATCAAATTTGAATCATTTTAAATTTG
AATCATTTTAGATTCAAGTCAATTAAGTTTAACACTCGAATTAATCGAATGGAAGAGACATCCAT
GTCTTACATACTCTTTCCTTTTTTTTTTGCTTTTTAAGTTTTATTGGTTTTAACTTAGAAAAAAA
ATAAAATAAAAGAGATAAAATTCAAACGAAACTATTTTGAGTATTTAAATTTTCATATT
Found at i:376944 original size:17 final size:18
Alignment explanation
Indices: 376924--376957 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
376914 ATGAGGATTG
*
376924 GGGATGTGA-AAAAAAAT
1 GGGATATGATAAAAAAAT
376941 GGGATATGATAAAAAAA
1 GGGATATGATAAAAAAA
376958 GTATGGGTTG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 8 0.53
18 7 0.47
ACGTcount: A:0.56, C:0.00, G:0.26, T:0.18
Consensus pattern (18 bp):
GGGATATGATAAAAAAAT
Found at i:377491 original size:17 final size:17
Alignment explanation
Indices: 377469--377502 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
377459 TATCTGCATT
377469 TACTTTTATATTT-TTTA
1 TACTTTT-TATTTGTTTA
377486 TACTTTTTATTTGTTTA
1 TACTTTTTATTTGTTTA
377503 ATAAAGAGGT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 5 0.31
17 11 0.69
ACGTcount: A:0.21, C:0.06, G:0.03, T:0.71
Consensus pattern (17 bp):
TACTTTTTATTTGTTTA
Found at i:378312 original size:2 final size:2
Alignment explanation
Indices: 378305--378337 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
378295 CTTTTGTTAT
378305 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
378338 TATTTGAACT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:382578 original size:21 final size:21
Alignment explanation
Indices: 382552--382591 Score: 80
Period size: 21 Copynumber: 1.9 Consensus size: 21
382542 CTTTATCATC
382552 TCCTTCAAGCATTTGATTCTG
1 TCCTTCAAGCATTTGATTCTG
382573 TCCTTCAAGCATTTGATTC
1 TCCTTCAAGCATTTGATTC
382592 CCTCCTCTGG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.20, C:0.25, G:0.12, T:0.42
Consensus pattern (21 bp):
TCCTTCAAGCATTTGATTCTG
Found at i:382597 original size:21 final size:21
Alignment explanation
Indices: 382551--382597 Score: 76
Period size: 21 Copynumber: 2.2 Consensus size: 21
382541 CCTTTATCAT
*
382551 CTCCTTCAAGCATTTGATTCT
1 CTCCTTCAAGCATTTGATTCC
*
382572 GTCCTTCAAGCATTTGATTCC
1 CTCCTTCAAGCATTTGATTCC
382593 CTCCT
1 CTCCT
382598 CTGGCTGAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.17, C:0.32, G:0.11, T:0.40
Consensus pattern (21 bp):
CTCCTTCAAGCATTTGATTCC
Found at i:385068 original size:16 final size:16
Alignment explanation
Indices: 385049--385116 Score: 75
Period size: 16 Copynumber: 4.2 Consensus size: 16
385039 TATATATATA
*
385049 TAAATATATTAAAATT
1 TAAATATATAAAAATT
385065 TAAATA-ATAAAAATT
1 TAAATATATAAAAATT
*
385080 ATTAATATATAAAAATT
1 -TAAATATATAAAAATT
* * *
385097 TATATAAATAAAAAAT
1 TAAATATATAAAAATT
385113 TAAA
1 TAAA
385117 AAAAATAATA
Statistics
Matches: 43, Mismatches: 7, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
15 8 0.19
16 26 0.60
17 9 0.21
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (16 bp):
TAAATATATAAAAATT
Found at i:385176 original size:31 final size:31
Alignment explanation
Indices: 385079--385179 Score: 78
Period size: 31 Copynumber: 3.5 Consensus size: 31
385069 TAATAAAAAT
* *
385079 TATTAATATAT-AAAAATTTATATAAATAAA
1 TATTAATATATAAAAAATATATATAATTAAA
385109 -A--AAT-TA-AAAAAA-ATA-AT-ATT-AA
1 TATTAATATATAAAAAATATATATAATTAAA
*
385131 TATTATGCAAATATAAAAAATATATATAATTAAA
1 TATTA---ATATATAAAAAATATATATAATTAAA
385165 TATTAATATATAAAA
1 TATTAATATATAAAA
385180 TTTTATATAA
Statistics
Matches: 54, Mismatches: 4, Indels: 25
0.65 0.05 0.30
Matches are distributed among these distances:
22 2 0.04
23 3 0.06
24 2 0.04
25 3 0.06
26 7 0.13
27 3 0.06
28 1 0.02
29 3 0.06
30 6 0.11
31 12 0.22
32 2 0.04
33 3 0.06
34 7 0.13
ACGTcount: A:0.62, C:0.01, G:0.01, T:0.36
Consensus pattern (31 bp):
TATTAATATATAAAAAATATATATAATTAAA
Found at i:385187 original size:20 final size:20
Alignment explanation
Indices: 385148--385198 Score: 57
Period size: 20 Copynumber: 2.5 Consensus size: 20
385138 CAAATATAAA
*
385148 AAATATATATAATTAAATAT
1 AAATATATAAAATTAAATAT
* **
385168 TAATATATAAAATTTTATAT
1 AAATATATAAAATTAAATAT
*
385188 AAATTTATAAA
1 AAATATATAAA
385199 TATACAAAAT
Statistics
Matches: 25, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (20 bp):
AAATATATAAAATTAAATAT
Found at i:391026 original size:9 final size:9
Alignment explanation
Indices: 391012--391056 Score: 54
Period size: 9 Copynumber: 4.9 Consensus size: 9
391002 TTTTTATTTA
391012 AAAATTAAT
1 AAAATTAAT
*
391021 AAAATTAAA
1 AAAATTAAT
*
391030 AATAAATAAT
1 AA-AATTAAT
*
391040 AAATTTAAT
1 AAAATTAAT
391049 AAAATTAA
1 AAAATTAA
391057 AATATACAAT
Statistics
Matches: 29, Mismatches: 6, Indels: 2
0.78 0.16 0.05
Matches are distributed among these distances:
9 22 0.76
10 7 0.24
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (9 bp):
AAAATTAAT
Found at i:391030 original size:16 final size:16
Alignment explanation
Indices: 391009--391082 Score: 57
Period size: 16 Copynumber: 4.8 Consensus size: 16
390999 TAATTTTTAT
391009 TTAAAAATTAATAAAA
1 TTAAAAATTAATAAAA
*
391025 TTAAAAA-TAA-ATAA
1 TTAAAAATTAATAAAA
*
391039 -T-AAATTTAATAAAA
1 TTAAAAATTAATAAAA
*
391053 TTAAAATATACAATAAAA
1 TTAAAA-AT-TAATAAAA
* *
391071 TCAAATATTAAT
1 TTAAAAATTAAT
391083 TATAATACAA
Statistics
Matches: 44, Mismatches: 8, Indels: 12
0.69 0.12 0.19
Matches are distributed among these distances:
12 3 0.07
13 4 0.09
14 6 0.14
15 4 0.09
16 13 0.30
17 3 0.07
18 11 0.25
ACGTcount: A:0.65, C:0.03, G:0.00, T:0.32
Consensus pattern (16 bp):
TTAAAAATTAATAAAA
Found at i:391069 original size:27 final size:28
Alignment explanation
Indices: 391016--391069 Score: 83
Period size: 27 Copynumber: 2.0 Consensus size: 28
391006 TATTTAAAAA
*
391016 TTAATAAAATTAAAAATAAATAATAAAT
1 TTAATAAAATTAAAAATAAACAATAAAT
*
391044 TTAATAAAATT-AAAATATACAATAAA
1 TTAATAAAATTAAAAATAAACAATAAA
391070 ATCAAATATT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
27 13 0.54
28 11 0.46
ACGTcount: A:0.67, C:0.02, G:0.00, T:0.31
Consensus pattern (28 bp):
TTAATAAAATTAAAAATAAACAATAAAT
Found at i:391071 original size:28 final size:26
Alignment explanation
Indices: 391010--391071 Score: 79
Period size: 28 Copynumber: 2.2 Consensus size: 26
391000 AATTTTTATT
*
391010 TAAAAATTAATAAAATTAAAAATAAA
1 TAAAATTTAATAAAATTAAAAATAAA
391036 TAATAAATTTAATAAAATTAAAATATACAA
1 T-A-AAATTTAATAAAATTAAAA-ATA-AA
391066 TAAAAT
1 TAAAAT
391072 CAAATATTAA
Statistics
Matches: 31, Mismatches: 1, Indels: 6
0.82 0.03 0.16
Matches are distributed among these distances:
26 1 0.03
27 1 0.03
28 22 0.71
29 4 0.13
30 3 0.10
ACGTcount: A:0.68, C:0.02, G:0.00, T:0.31
Consensus pattern (26 bp):
TAAAATTTAATAAAATTAAAAATAAA
Found at i:391670 original size:16 final size:15
Alignment explanation
Indices: 391559--391669 Score: 89
Period size: 16 Copynumber: 7.0 Consensus size: 15
391549 AACCGAATAA
*
391559 ATTTTAAA-TAATTT
1 ATTTTAAATTATTTT
**
391573 ATTTTATTTTATTTT
1 ATTTTAAATTATTTT
391588 AAATTTTTAAATTATTTTT
1 --A-TTTTAAATTA-TTTT
**
391607 AAAATTAAATTATTTT
1 -ATTTTAAATTATTTT
* *
391623 ACTTTTGAATAATTTT
1 A-TTTTAAATTATTTT
391639 ATATTTAAATTATTTT
1 AT-TTTAAATTATTTT
391655 ATTTTAAATTATTTT
1 ATTTTAAATTATTTT
391670 TTAATTTGAG
Statistics
Matches: 77, Mismatches: 13, Indels: 13
0.75 0.13 0.13
Matches are distributed among these distances:
14 6 0.08
15 20 0.26
16 28 0.36
17 9 0.12
18 10 0.13
19 4 0.05
ACGTcount: A:0.36, C:0.01, G:0.01, T:0.62
Consensus pattern (15 bp):
ATTTTAAATTATTTT
Found at i:391735 original size:10 final size:9
Alignment explanation
Indices: 391702--391801 Score: 54
Period size: 9 Copynumber: 11.6 Consensus size: 9
391692 AATATTCAGA
391702 TTTAAGTTAT
1 TTTAA-TTAT
391712 TTTAA--AT
1 TTTAATTAT
391719 TTTAATTAT
1 TTTAATTAT
*
391728 TTTAAATTTAA
1 TTT-AA-TTAT
* *
391739 ATTAATTAAA
1 TTTAATT-AT
391749 TTTAATTAT
1 TTTAATTAT
391758 TTTAA--AT
1 TTTAATTAT
*
391765 TTAAATTA-
1 TTTAATTAT
391773 TTT--TTA-
1 TTTAATTAT
*
391779 ATTAATTAT
1 TTTAATTAT
*
391788 TTTATTTAT
1 TTTAATTAT
391797 TTTAA
1 TTTAA
391802 ATTAGATTTA
Statistics
Matches: 70, Mismatches: 10, Indels: 21
0.69 0.10 0.21
Matches are distributed among these distances:
6 5 0.07
7 13 0.19
8 5 0.07
9 25 0.36
10 17 0.24
11 5 0.07
ACGTcount: A:0.39, C:0.00, G:0.01, T:0.60
Consensus pattern (9 bp):
TTTAATTAT
Found at i:391736 original size:60 final size:61
Alignment explanation
Indices: 391641--391791 Score: 159
Period size: 60 Copynumber: 2.5 Consensus size: 61
391631 ATAATTTTAT
* * * *
391641 ATTTAAATTATTTT-ATTTTAAATTATTTTTTAATTTGAGTTAATCAAACTTAA-TA-TTCAG
1 ATTTAAATTATTTTAATTTT-AATTA-TTTTAAATTTAAATTAATCAAACTTAATTATTTCAA
* * * *
391701 ATTTAAGTTATTTTAAATTTTAATTATTTTAAATTTAAATTAATTAAATTTAATTATTTTAA
1 ATTTAAATTATTTT-AATTTTAATTATTTTAAATTTAAATTAATCAAACTTAATTATTTCAA
391763 ATTTAAATTATTTTTAA--TTAATTATTTTA
1 ATTTAAATTA-TTTTAATTTTAATTATTTTA
391792 TTTATTTTAA
Statistics
Matches: 77, Mismatches: 9, Indels: 10
0.80 0.09 0.10
Matches are distributed among these distances:
60 47 0.61
61 7 0.09
62 19 0.25
63 4 0.05
ACGTcount: A:0.39, C:0.02, G:0.03, T:0.56
Consensus pattern (61 bp):
ATTTAAATTATTTTAATTTTAATTATTTTAAATTTAAATTAATCAAACTTAATTATTTCAA
Found at i:391747 original size:15 final size:15
Alignment explanation
Indices: 391713--391891 Score: 97
Period size: 16 Copynumber: 11.9 Consensus size: 15
391703 TTAAGTTATT
* *
391713 TTAAATTTTAATTATT
1 TTAAATTTAAATTA-A
391729 TTAAATTTAAATTAA
1 TTAAATTTAAATTAA
*
391744 TTAAATTT-AATTATT
1 TTAAATTTAAATTA-A
391759 TTAAATTTAAATT-A
1 TTAAATTTAAATTAA
391773 TT---TTT-AATTAA
1 TTAAATTTAAATTAA
* * *
391784 TT--ATTTTATTTATT
1 TTAAATTTAAATTA-A
* *
391798 TTAAA-TTAGATTTAT
1 TTAAATTTA-AATTAA
391813 TTAAATTTAAATTATA
1 TTAAATTTAAATTA-A
391829 TTAAATTTAAATTAA
1 TTAAATTTAAATTAA
*
391844 TTAATTTTAAAATATTAA
1 TTAAATTT--AA-ATTAA
** *
391862 CTTTTATTATTAATTAA
1 -TTAAATT-TAAATTAA
391879 TTAAATTTAAATT
1 TTAAATTTAAATT
391892 TGAGTGAATT
Statistics
Matches: 130, Mismatches: 17, Indels: 33
0.72 0.09 0.18
Matches are distributed among these distances:
10 4 0.03
11 6 0.05
12 3 0.02
13 4 0.03
14 9 0.07
15 41 0.32
16 45 0.35
17 7 0.05
18 6 0.05
19 4 0.03
20 1 0.01
ACGTcount: A:0.43, C:0.01, G:0.01, T:0.56
Consensus pattern (15 bp):
TTAAATTTAAATTAA
Found at i:391821 original size:21 final size:21
Alignment explanation
Indices: 391788--391841 Score: 65
Period size: 21 Copynumber: 2.6 Consensus size: 21
391778 AATTAATTAT
*
391788 TTTATTT-ATTTTAAATTAGA
1 TTTATTTAAATTTAAATTAGA
*
391808 TTTATTTAAATTTAAATTATA
1 TTTATTTAAATTTAAATTAGA
*
391829 TTAAATTTAAATT
1 TT-TATTTAAATT
391842 AATTAATTTT
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
20 7 0.24
21 13 0.45
22 9 0.31
ACGTcount: A:0.41, C:0.00, G:0.02, T:0.57
Consensus pattern (21 bp):
TTTATTTAAATTTAAATTAGA
Found at i:391832 original size:16 final size:16
Alignment explanation
Indices: 391701--391854 Score: 118
Period size: 16 Copynumber: 9.4 Consensus size: 16
391691 TAATATTCAG
* *
391701 ATTTAAGTTATTTTAA
1 ATTTAAATTATATTAA
* *
391717 ATTTTAATTATTTTAA
1 ATTTAAATTATATTAA
391733 ATTTAAATTA-ATTAA
1 ATTTAAATTATATTAA
*
391748 ATTT-AATTATTTTAA
1 ATTTAAATTATATTAA
* *
391763 ATTTAAATTATTTTTA
1 ATTTAAATTATATTAA
* *
391779 A-TTAATTATTTTATTTA
1 ATTTAA--ATTATATTAA
*
391796 TTTTAAATTAGATTTATTTAA
1 ATTTAAATT--A--TA-TTAA
391817 ATTTAAATTATATTAA
1 ATTTAAATTATATTAA
391833 ATTTAAATTA-ATTAA
1 ATTTAAATTATATTAA
*
391848 TTTTAAA
1 ATTTAAA
391855 ATATTAACTT
Statistics
Matches: 115, Mismatches: 13, Indels: 21
0.77 0.09 0.14
Matches are distributed among these distances:
14 5 0.04
15 31 0.27
16 51 0.44
17 10 0.09
18 4 0.03
19 1 0.01
20 2 0.02
21 11 0.10
ACGTcount: A:0.42, C:0.00, G:0.01, T:0.56
Consensus pattern (16 bp):
ATTTAAATTATATTAA
Found at i:392294 original size:33 final size:30
Alignment explanation
Indices: 392233--392294 Score: 81
Period size: 33 Copynumber: 2.0 Consensus size: 30
392223 TAAAGTCTTA
392233 ATTAAATAAATTTAAAATTAAAAATAAATC
1 ATTAAATAAATTTAAAATTAAAAATAAATC
392263 ATTATAATAAATATATAAAA-TAAAAAGTAAAT
1 ATTA-AATAAAT-T-TAAAATTAAAAA-TAAAT
392295 TGAGATATGA
Statistics
Matches: 28, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
30 4 0.14
31 7 0.25
32 7 0.25
33 10 0.36
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.32
Consensus pattern (30 bp):
ATTAAATAAATTTAAAATTAAAAATAAATC
Found at i:392978 original size:17 final size:17
Alignment explanation
Indices: 392956--392988 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
392946 TGTATATAGA
392956 AAAATAA-AGCACAATAT
1 AAAATAATA-CACAATAT
392973 AAAATAATACACAATA
1 AAAATAATACACAATA
392989 CGAATATACG
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
17 14 0.93
18 1 0.07
ACGTcount: A:0.67, C:0.12, G:0.03, T:0.18
Consensus pattern (17 bp):
AAAATAATACACAATAT
Found at i:393271 original size:2 final size:2
Alignment explanation
Indices: 393264--393298 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
393254 TTACCTTCAT
393264 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
393299 TGTCAAGGCA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.00, C:0.49, G:0.00, T:0.51
Consensus pattern (2 bp):
TC
Found at i:393799 original size:17 final size:16
Alignment explanation
Indices: 393775--393808 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
393765 TAAACTTGAA
* *
393775 TATTAAAAATTTTATT
1 TATTTAAAATTTGATT
393791 TATTTAAAATTTGATT
1 TATTTAAAATTTGATT
393807 TA
1 TA
393809 ATTGATTTAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.41, C:0.00, G:0.03, T:0.56
Consensus pattern (16 bp):
TATTTAAAATTTGATT
Found at i:394068 original size:15 final size:16
Alignment explanation
Indices: 394050--394087 Score: 53
Period size: 15 Copynumber: 2.5 Consensus size: 16
394040 TTATTTTATT
394050 TATAATTAT-ATTAAA
1 TATAATTATGATTAAA
394065 TATAA-TATGATTAAA
1 TATAATTATGATTAAA
*
394080 AATAATTA
1 TATAATTA
394088 CAATAATAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
14 3 0.15
15 15 0.75
16 2 0.10
ACGTcount: A:0.55, C:0.00, G:0.03, T:0.42
Consensus pattern (16 bp):
TATAATTATGATTAAA
Found at i:394480 original size:21 final size:21
Alignment explanation
Indices: 394441--394499 Score: 59
Period size: 21 Copynumber: 2.8 Consensus size: 21
394431 TTTGATTTAT
* *
394441 TTTTATTATTTAAAATTAT-TA
1 TTTTA-TAATTAAATTTATATA
394462 TTTT-TAAATTAATATTTATATA
1 TTTTAT-AATTAA-ATTTATATA
394484 TTTTATAATTAAATTT
1 TTTTATAATTAAATTT
394500 TAAAAAAAAT
Statistics
Matches: 32, Mismatches: 2, Indels: 8
0.76 0.05 0.19
Matches are distributed among these distances:
19 1 0.03
20 5 0.16
21 13 0.41
22 12 0.38
23 1 0.03
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (21 bp):
TTTTATAATTAAATTTATATA
Found at i:394485 original size:22 final size:20
Alignment explanation
Indices: 394450--394499 Score: 57
Period size: 22 Copynumber: 2.4 Consensus size: 20
394440 TTTTTATTAT
*
394450 TTAAAATTATTATTTT-TAAA
1 TTAAATTTATTATTTTAT-AA
394470 TTAATATTTATATATTTTATAA
1 TTAA-ATTTAT-TATTTTATAA
394492 TTAAATTT
1 TTAAATTT
394500 TAAAAAAAAT
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
20 4 0.15
21 9 0.35
22 12 0.46
23 1 0.04
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (20 bp):
TTAAATTTATTATTTTATAA
Found at i:400084 original size:15 final size:16
Alignment explanation
Indices: 400056--400085 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
400046 ATTTAAATAA
400056 TAAAATTATATTTATT
1 TAAAATTATATTTATT
400072 TAAAATT-TATTTAT
1 TAAAATTATATTTAT
400086 AAATATAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 7 0.50
16 7 0.50
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (16 bp):
TAAAATTATATTTATT
Found at i:400094 original size:35 final size:35
Alignment explanation
Indices: 400030--400096 Score: 93
Period size: 35 Copynumber: 1.9 Consensus size: 35
400020 ATTTTAATTG
*
400030 ATTTATTTAAATTATTATTTAAATAATAAAATTAT
1 ATTTATTTAAATTATTATATAAATAATAAAATTAT
400065 ATTTATTTAAAATTTATT-TATAAAT-ATAAAAT
1 ATTTATTT-AAA-TTATTATATAAATAATAAAAT
400097 AATAATTTTT
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
35 15 0.52
36 9 0.31
37 5 0.17
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (35 bp):
ATTTATTTAAATTATTATATAAATAATAAAATTAT
Found at i:409906 original size:20 final size:21
Alignment explanation
Indices: 409861--409906 Score: 51
Period size: 20 Copynumber: 2.3 Consensus size: 21
409851 ATTAATTAGA
* *
409861 TGAATTAAATTAATTTAAGTT
1 TGAATTAAATTAATGTAAATT
*
409882 T-AATTAATTTAA-GTAAATT
1 TGAATTAAATTAATGTAAATT
409901 TGAATT
1 TGAATT
409907 TTTAAATTTT
Statistics
Matches: 21, Mismatches: 3, Indels: 3
0.78 0.11 0.11
Matches are distributed among these distances:
19 6 0.29
20 14 0.67
21 1 0.05
ACGTcount: A:0.43, C:0.00, G:0.09, T:0.48
Consensus pattern (21 bp):
TGAATTAAATTAATGTAAATT
Found at i:409925 original size:18 final size:17
Alignment explanation
Indices: 409904--409943 Score: 53
Period size: 18 Copynumber: 2.3 Consensus size: 17
409894 GTAAATTTGA
*
409904 ATTTTTAAATTTTTATAT
1 ATTTTTAAATTTTAAT-T
*
409922 ATTTTTTAATTTTAATT
1 ATTTTTAAATTTTAATT
409939 ATTTT
1 ATTTT
409944 GAGTTTAAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
17 6 0.30
18 14 0.70
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (17 bp):
ATTTTTAAATTTTAATT
Found at i:410683 original size:16 final size:16
Alignment explanation
Indices: 410664--410713 Score: 50
Period size: 16 Copynumber: 3.2 Consensus size: 16
410654 GAATAAATTT
410664 TTATTTTAATTAAAAA
1 TTATTTTAATTAAAAA
* *
410680 TTA-TTTATTTTAAAA
1 TTATTTTAATTAAAAA
*
410695 TT-TATTTAATTATAAA
1 TTAT-TTTAATTAAAAA
410711 TTA
1 TTA
410714 AATGCTAAAA
Statistics
Matches: 26, Mismatches: 5, Indels: 5
0.72 0.14 0.14
Matches are distributed among these distances:
15 12 0.46
16 14 0.54
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (16 bp):
TTATTTTAATTAAAAA
Done.