Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold1740
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 654062
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.34
File 1 of 4
Found at i:991 original size:13 final size:13
Alignment explanation
Indices: 973--997 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
963 CAATTCATTA
973 TGTATCGATACAT
1 TGTATCGATACAT
986 TGTATCGATACA
1 TGTATCGATACA
998 ATTCATCATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:996 original size:33 final size:33
Alignment explanation
Indices: 953--1017 Score: 112
Period size: 33 Copynumber: 2.0 Consensus size: 33
943 TTTGAAGCAA
* *
953 TGTATTGATACAATTCATTATGTATCGATACAT
1 TGTATCGATACAATTCATCATGTATCGATACAT
986 TGTATCGATACAATTCATCATGTATCGATACA
1 TGTATCGATACAATTCATCATGTATCGATACA
1018 ATGTGCCATG
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.34, C:0.15, G:0.12, T:0.38
Consensus pattern (33 bp):
TGTATCGATACAATTCATCATGTATCGATACAT
Found at i:1011 original size:20 final size:19
Alignment explanation
Indices: 952--1019 Score: 67
Period size: 20 Copynumber: 3.8 Consensus size: 19
942 GTTTGAAGCA
*
952 ATGTATTGATACAATTCATT
1 ATGTATCGATACAATTCA-T
972 ATGTATCGAT---A--CAT
1 ATGTATCGATACAATTCAT
986 -TGTATCGATACAATTCAT
1 ATGTATCGATACAATTCAT
1004 CATGTATCGATACAAT
1 -ATGTATCGATACAAT
1020 GTGCCATGTA
Statistics
Matches: 40, Mismatches: 1, Indels: 14
0.73 0.02 0.25
Matches are distributed among these distances:
13 9 0.22
14 1 0.03
15 2 0.05
16 1 0.03
17 1 0.03
18 3 0.08
20 23 0.57
ACGTcount: A:0.35, C:0.15, G:0.12, T:0.38
Consensus pattern (19 bp):
ATGTATCGATACAATTCAT
Found at i:1027 original size:20 final size:19
Alignment explanation
Indices: 986--1038 Score: 63
Period size: 20 Copynumber: 2.7 Consensus size: 19
976 ATCGATACAT
986 TGTATCGATACAATTCATCA
1 TGTATCGATACAATTCA-CA
1006 TGTATCGATACAATGTGC-CA
1 TGTATCGATACAAT-T-CACA
*
1026 TGTATTGATACAA
1 TGTATCGATACAA
1039 ATAGTGGTAG
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
20 28 0.93
21 1 0.03
22 1 0.03
ACGTcount: A:0.34, C:0.17, G:0.15, T:0.34
Consensus pattern (19 bp):
TGTATCGATACAATTCACA
Found at i:1092 original size:20 final size:20
Alignment explanation
Indices: 1067--1124 Score: 75
Period size: 19 Copynumber: 3.0 Consensus size: 20
1057 TTGCCAGTTT
*
1067 CATGTATCGATACAATTGTG
1 CATGTATCGATACAATTGTA
*
1087 CATGTATCGATACAA-TGAA
1 CATGTATCGATACAATTGTA
*
1106 CATGTATCCATAC-ATTGTA
1 CATGTATCGATACAATTGTA
1125 TCGATACAGA
Statistics
Matches: 33, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
18 1 0.03
19 17 0.52
20 15 0.45
ACGTcount: A:0.34, C:0.17, G:0.16, T:0.33
Consensus pattern (20 bp):
CATGTATCGATACAATTGTA
Found at i:1147 original size:52 final size:51
Alignment explanation
Indices: 1091--1207 Score: 126
Period size: 52 Copynumber: 2.3 Consensus size: 51
1081 ATTGTGCATG
* * * *
1091 TATCGATACAATGAACATGTATCCATACATTGTATCGATACAGAGCCTAATC
1 TATCGATACAATG-ACATGTATCCATACATTATATCGATACAAAGCATAAGC
* *** * *
1143 TATCGATACATCTGGTGTGTATCGATACATTATATCGATACAAAGCATAAGG
1 TATCGATACA-ATGACATGTATCCATACATTATATCGATACAAAGCATAAGC
1195 TATCGATACAATG
1 TATCGATACAATG
1208 TGTATCGATA
Statistics
Matches: 53, Mismatches: 11, Indels: 3
0.79 0.16 0.04
Matches are distributed among these distances:
51 2 0.04
52 49 0.92
53 2 0.04
ACGTcount: A:0.36, C:0.18, G:0.16, T:0.30
Consensus pattern (51 bp):
TATCGATACAATGACATGTATCCATACATTATATCGATACAAAGCATAAGC
Found at i:1785 original size:27 final size:30
Alignment explanation
Indices: 1754--1810 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
1744 TTAAAGGCTC
*
1754 TCGTTTAAAA-ATTTT-T-CCCCTTGATAA
1 TCGTTGAAAAGATTTTCTCCCCCTTGATAA
1781 TCGTTGAAAAGATTTTCTCCCCCTTGATAA
1 TCGTTGAAAAGATTTTCTCCCCCTTGATAA
1811 AAAATTTATT
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
27 9 0.35
28 5 0.19
29 1 0.04
30 11 0.42
ACGTcount: A:0.28, C:0.21, G:0.11, T:0.40
Consensus pattern (30 bp):
TCGTTGAAAAGATTTTCTCCCCCTTGATAA
Found at i:3705 original size:13 final size:13
Alignment explanation
Indices: 3672--3708 Score: 65
Period size: 13 Copynumber: 2.8 Consensus size: 13
3662 TTAGTAACCC
*
3672 ATGTATCCATACA
1 ATGTATCGATACA
3685 ATGTATCGATACA
1 ATGTATCGATACA
3698 ATGTATCGATA
1 ATGTATCGATA
3709 TAAAGAATAT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 23 1.00
ACGTcount: A:0.38, C:0.16, G:0.14, T:0.32
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:7892 original size:3 final size:3
Alignment explanation
Indices: 7884--7914 Score: 53
Period size: 3 Copynumber: 10.3 Consensus size: 3
7874 TCCGAGTCAA
*
7884 CAT CAT CAT CAT CAT CAT CAT CTT CAT CAT C
1 CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT C
7915 TTTGATGGTT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.29, C:0.35, G:0.00, T:0.35
Consensus pattern (3 bp):
CAT
Found at i:9575 original size:19 final size:20
Alignment explanation
Indices: 9531--9584 Score: 74
Period size: 19 Copynumber: 2.8 Consensus size: 20
9521 CTGCCAGTTT
**
9531 CATGTATTGATACAATTGTG
1 CATGTATTGATACAATTGAA
*
9551 CATGTATCGATACAA-TGAA
1 CATGTATTGATACAATTGAA
9570 CATGTATTGATACAA
1 CATGTATTGATACAA
9585 AGCATAATGT
Statistics
Matches: 30, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
19 16 0.53
20 14 0.47
ACGTcount: A:0.37, C:0.13, G:0.17, T:0.33
Consensus pattern (20 bp):
CATGTATTGATACAATTGAA
Found at i:10200 original size:23 final size:23
Alignment explanation
Indices: 10174--10219 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
10164 TTTTAAGATG
10174 AATTATAAATTG-TTGAAAATTTT
1 AATTATAAATTGATT-AAAATTTT
* *
10197 AATTTTTAATTGATTAAAATTTT
1 AATTATAAATTGATTAAAATTTT
10220 TTAATGTTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 18 0.90
24 2 0.10
ACGTcount: A:0.41, C:0.00, G:0.07, T:0.52
Consensus pattern (23 bp):
AATTATAAATTGATTAAAATTTT
Found at i:12182 original size:14 final size:15
Alignment explanation
Indices: 12145--12184 Score: 57
Period size: 14 Copynumber: 2.8 Consensus size: 15
12135 AATAAAAATT
12145 AATTTA-TTTAACTA
1 AATTTATTTTAACTA
*
12159 AAATTATTTTAA-TA
1 AATTTATTTTAACTA
12173 AATTTATTTTAA
1 AATTTATTTTAA
12185 AGTTAATATA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
14 18 0.78
15 5 0.22
ACGTcount: A:0.45, C:0.03, G:0.00, T:0.53
Consensus pattern (15 bp):
AATTTATTTTAACTA
Found at i:16650 original size:28 final size:28
Alignment explanation
Indices: 16604--16719 Score: 84
Period size: 28 Copynumber: 4.3 Consensus size: 28
16594 TTGCACGTAA
* *
16604 AATTTAATTTA-AATGTGTGAAATTTTT
1 AATTAAATTTATAATATGTGAAATTTTT
* * *
16631 AATTAAACTTTATAAT-TGTGGAATCTAT
1 AATTAAA-TTTATAATATGTGAAATTTTT
* * *
16659 AATTAAATTT-TCATATATGAAAATTTT
1 AATTAAATTTATAATATGTGAAATTTTT
*
16686 AATTAAAATTT-TTATATGTG-AATTTTT
1 AATT-AAATTTATAATATGTGAAATTTTT
16713 --TTAAATT
1 AATTAAATT
16720 AAGATTTTAC
Statistics
Matches: 72, Mismatches: 13, Indels: 11
0.75 0.14 0.11
Matches are distributed among these distances:
24 5 0.07
25 2 0.03
26 3 0.04
27 26 0.36
28 33 0.46
29 3 0.04
ACGTcount: A:0.40, C:0.03, G:0.08, T:0.50
Consensus pattern (28 bp):
AATTAAATTTATAATATGTGAAATTTTT
Found at i:16728 original size:29 final size:29
Alignment explanation
Indices: 16682--16737 Score: 69
Period size: 29 Copynumber: 1.9 Consensus size: 29
16672 TATATGAAAA
* *
16682 TTTTAATTAAAATTTTTATATGTGAATTT
1 TTTTAATTAAAATTTTTACATGAGAATTT
*
16711 TTTTAAATTAAGA-TTTTACATGAGAAT
1 TTTT-AATTAAAATTTTTACATGAGAAT
16738 ATAATTTTCT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
29 16 0.70
30 7 0.30
ACGTcount: A:0.38, C:0.02, G:0.09, T:0.52
Consensus pattern (29 bp):
TTTTAATTAAAATTTTTACATGAGAATTT
Found at i:18638 original size:13 final size:13
Alignment explanation
Indices: 18620--18652 Score: 57
Period size: 13 Copynumber: 2.5 Consensus size: 13
18610 GCCGTTGGGC
*
18620 ACAATGTATTGAT
1 ACAATGTATAGAT
18633 ACAATGTATAGAT
1 ACAATGTATAGAT
18646 ACAATGT
1 ACAATGT
18653 CCCATGTATC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.42, C:0.09, G:0.15, T:0.33
Consensus pattern (13 bp):
ACAATGTATAGAT
Found at i:18737 original size:19 final size:19
Alignment explanation
Indices: 18698--18769 Score: 83
Period size: 20 Copynumber: 3.7 Consensus size: 19
18688 TACTAGTTTC
*
18698 ATGTATCAATACAATTGAGT
1 ATGTATCGATACAA-TGAGT
18718 ATGTATCGATACAATGAGT
1 ATGTATCGATACAATGAGT
* *
18737 ACGTATCGATACAAAGCA-T
1 ATGTATCGATACAATG-AGT
18756 AATGTATCGATACA
1 -ATGTATCGATACA
18770 TCTGGATGTG
Statistics
Matches: 46, Mismatches: 4, Indels: 4
0.85 0.07 0.07
Matches are distributed among these distances:
19 20 0.43
20 26 0.57
ACGTcount: A:0.40, C:0.14, G:0.17, T:0.29
Consensus pattern (19 bp):
ATGTATCGATACAATGAGT
Found at i:19619 original size:32 final size:32
Alignment explanation
Indices: 19578--19644 Score: 100
Period size: 32 Copynumber: 2.1 Consensus size: 32
19568 CGTTACAAGC
* *
19578 CAATGTATCGATACATTTTG-GATGTATCGATA
1 CAATGTATCGACACATATTGTG-TGTATCGATA
19610 CAATGTATCGACACATATTGTGTGTATCGATA
1 CAATGTATCGACACATATTGTGTGTATCGATA
19642 CAA
1 CAA
19645 ATAGTTAAGG
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
32 31 0.97
33 1 0.03
ACGTcount: A:0.33, C:0.15, G:0.18, T:0.34
Consensus pattern (32 bp):
CAATGTATCGACACATATTGTGTGTATCGATA
Found at i:19732 original size:20 final size:21
Alignment explanation
Indices: 19685--19737 Score: 72
Period size: 20 Copynumber: 2.6 Consensus size: 21
19675 GCCAATGACC
**
19685 TGTATCGATACATTCTTTTCA
1 TGTATCGATACATTCTGGTCA
*
19706 AGTATCGATACATT-TGGTCA
1 TGTATCGATACATTCTGGTCA
19726 TGTATCGATACA
1 TGTATCGATACA
19738 ATGTATCGAT
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
20 15 0.54
21 13 0.46
ACGTcount: A:0.28, C:0.17, G:0.15, T:0.40
Consensus pattern (21 bp):
TGTATCGATACATTCTGGTCA
Found at i:23113 original size:13 final size:13
Alignment explanation
Indices: 23095--23130 Score: 54
Period size: 13 Copynumber: 2.8 Consensus size: 13
23085 AATCCCCTTG
*
23095 TATCGATACACTA
1 TATCGATACAATA
*
23108 TATCGATACAATG
1 TATCGATACAATA
23121 TATCGATACA
1 TATCGATACA
23131 GAGAATGCTG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
13 21 1.00
ACGTcount: A:0.39, C:0.19, G:0.11, T:0.31
Consensus pattern (13 bp):
TATCGATACAATA
Found at i:23819 original size:21 final size:20
Alignment explanation
Indices: 23793--23839 Score: 58
Period size: 20 Copynumber: 2.3 Consensus size: 20
23783 AATATTTGTG
*
23793 GATACATTCTTCTCAAGTATC
1 GATACATT-TGCTCAAGTATC
* *
23814 GATACATTTGGTCATGTATC
1 GATACATTTGCTCAAGTATC
23834 GATACA
1 GATACA
23840 ATGTATCGAT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
20 15 0.65
21 8 0.35
ACGTcount: A:0.30, C:0.19, G:0.15, T:0.36
Consensus pattern (20 bp):
GATACATTTGCTCAAGTATC
Found at i:23845 original size:13 final size:13
Alignment explanation
Indices: 23827--23851 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
23817 ACATTTGGTC
23827 ATGTATCGATACA
1 ATGTATCGATACA
23840 ATGTATCGATAC
1 ATGTATCGATAC
23852 TGTGCAATTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:27593 original size:32 final size:33
Alignment explanation
Indices: 27529--27596 Score: 102
Period size: 33 Copynumber: 2.1 Consensus size: 33
27519 CGTTACCAGC
* *
27529 CAATGTATCGATACATTTTGGGATGTATCGATA
1 CAATCTATCGATACATATTGGGATGTATCGATA
*
27562 CAATCTATCGATACATATTGTG-TGTATCGATA
1 CAATCTATCGATACATATTGGGATGTATCGATA
27594 CAA
1 CAA
27597 ACAGTTAAGG
Statistics
Matches: 32, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
32 13 0.41
33 19 0.59
ACGTcount: A:0.32, C:0.15, G:0.18, T:0.35
Consensus pattern (33 bp):
CAATCTATCGATACATATTGGGATGTATCGATA
Found at i:27684 original size:20 final size:21
Alignment explanation
Indices: 27637--27689 Score: 72
Period size: 20 Copynumber: 2.6 Consensus size: 21
27627 GCCAATGACC
**
27637 TGTATCGATACATTCTTTTCA
1 TGTATCGATACATTCTGGTCA
*
27658 AGTATCGATACATT-TGGTCA
1 TGTATCGATACATTCTGGTCA
27678 TGTATCGATACA
1 TGTATCGATACA
27690 ATGTATTGAT
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
20 15 0.54
21 13 0.46
ACGTcount: A:0.28, C:0.17, G:0.15, T:0.40
Consensus pattern (21 bp):
TGTATCGATACATTCTGGTCA
Found at i:31413 original size:32 final size:33
Alignment explanation
Indices: 31349--31416 Score: 102
Period size: 33 Copynumber: 2.1 Consensus size: 33
31339 CGTTACAAGT
* *
31349 CAATGTATCGATACATTTTGGGATGTATCGATA
1 CAATGTATCGACACATATTGGGATGTATCGATA
*
31382 CAATGTATCGACACATATTGTG-TGTATCGATA
1 CAATGTATCGACACATATTGGGATGTATCGATA
31414 CAA
1 CAA
31417 ATAGTTAAGG
Statistics
Matches: 32, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
32 13 0.41
33 19 0.59
ACGTcount: A:0.32, C:0.15, G:0.19, T:0.34
Consensus pattern (33 bp):
CAATGTATCGACACATATTGGGATGTATCGATA
Found at i:31504 original size:20 final size:21
Alignment explanation
Indices: 31457--31509 Score: 72
Period size: 20 Copynumber: 2.6 Consensus size: 21
31447 GCCAATGACC
**
31457 TGTATCGATACATTCTTTTCA
1 TGTATCGATACATTCTGGTCA
*
31478 AGTATCGATACATT-TGGTCA
1 TGTATCGATACATTCTGGTCA
31498 TGTATCGATACA
1 TGTATCGATACA
31510 ATGTATCGAT
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
20 15 0.54
21 13 0.46
ACGTcount: A:0.28, C:0.17, G:0.15, T:0.40
Consensus pattern (21 bp):
TGTATCGATACATTCTGGTCA
Found at i:31515 original size:13 final size:13
Alignment explanation
Indices: 31497--31521 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
31487 ACATTTGGTC
31497 ATGTATCGATACA
1 ATGTATCGATACA
31510 ATGTATCGATAC
1 ATGTATCGATAC
31522 TGTGCAATCT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:37354 original size:13 final size:13
Alignment explanation
Indices: 37336--37361 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
37326 TACACAAAGT
37336 ATGTATCGATACA
1 ATGTATCGATACA
37349 ATGTATCGATACA
1 ATGTATCGATACA
37362 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:37359 original size:32 final size:33
Alignment explanation
Indices: 37318--37381 Score: 103
Period size: 32 Copynumber: 2.0 Consensus size: 33
37308 TAGCCAAACT
**
37318 TGTATCGATACACAAAGTA-TGTATCGATACAA
1 TGTATCGATACACAAAAAATTGTATCGATACAA
37350 TGTATCGATACACAAAAAATTGTATCGATACA
1 TGTATCGATACACAAAAAATTGTATCGATACA
37382 TTGGCTTATA
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
32 17 0.59
33 12 0.41
ACGTcount: A:0.42, C:0.16, G:0.14, T:0.28
Consensus pattern (33 bp):
TGTATCGATACACAAAAAATTGTATCGATACAA
Found at i:37882 original size:34 final size:35
Alignment explanation
Indices: 37819--37885 Score: 102
Period size: 37 Copynumber: 1.9 Consensus size: 35
37809 CTAAGTGATT
37819 GAGAGGTTCTATCTTAGCCTTTGAAAAAGATAGAGA
1 GAGAGGTTCTATCTTAGCCTTTG-AAAAGATAGAGA
37855 GAGAGGTTTCTATCTTAGCC-TTG-AAAGATAG
1 GAGAGG-TTCTATCTTAGCCTTTGAAAAGATAG
37886 TGTTGTAAGG
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
34 8 0.27
36 9 0.30
37 13 0.43
ACGTcount: A:0.33, C:0.12, G:0.25, T:0.30
Consensus pattern (35 bp):
GAGAGGTTCTATCTTAGCCTTTGAAAAGATAGAGA
Found at i:45251 original size:89 final size:90
Alignment explanation
Indices: 44890--45314 Score: 303
Period size: 89 Copynumber: 4.8 Consensus size: 90
44880 TAATGGAGAC
* * * * * * * *
44890 GAAGTTTCCCCAAAGATAAAACTACAAGAAGGGTAAATTTGAGATTTTAAGGAGAATGGGGTTAG
1 GAAGTTTCCCCAAGGATAAAACTATACGAAGGGTAAATTTGAAATTTTTAGGAGAACGAGGTTGG
* ** ** * *
44955 AATATCCATTTGGAGTAATGAGGAT
66 AGTATCCCCTCAGAATAGTGAGGAT
* * * * * * ** *
44980 AAAGTTTCCCCAAGGACAAAATTATACGAA-AGAAAATTTG-TATTTTTATTAGAACGGGGTTGG
1 GAAGTTTCCCCAAGGATAAAACTATACGAAGGGTAAATTTGAAATTTTTAGGAGAACGAGGTTGG
*
45043 AGTATCCCCTCAAAATAGTGAGGAT
66 AGTATCCCCTCAGAATAGTGAGGAT
* * * * **
45068 GAAGTCTT-TCAAAAGACAAAACTATACGAAGGGTAAATTTGAAATTTTTAAAAGAAC-AGGGTT
1 GAAGT-TTCCCCAAGGATAAAACTATACGAAGGGTAAATTTGAAATTTTTAGGAGAACGA-GGTT
* * **
45131 TGAGTAT-CCTTTTGAATTAGTGAGGAT
64 GGAGTATCCCCTCAGAA-TAGTGAGGAT
* *
45158 G-AGTTTCCCCAAGGATAAAACCATATGAAGGGTAAATTTGAAATTTTTAGGAGAACGAGGTTGG
1 GAAGTTTCCCCAAGGATAAAACTATACGAAGGGTAAATTTGAAATTTTTAGGAGAACGAGGTTGG
*
45222 AGTATCCCCTCAGAA-AGTGGGGAT
66 AGTATCCCCTCAGAATAGTGAGGAT
* * * * * ** * ** *
45246 GGAGTTTTCCTAAGGATAGAATTATGTG-ATGAAAAATTTG-AATTTTT-GTTAGAACGAGGTTG
1 GAAGTTTCCCCAAGGATAAAACTATACGAAGGGTAAATTTGAAATTTTTAG-GAGAACGAGGTTG
45308 GAGTATC
65 GAGTATC
45315 TTCTTGAAAT
Statistics
Matches: 264, Mismatches: 61, Indels: 23
0.76 0.18 0.07
Matches are distributed among these distances:
86 1 0.00
87 26 0.10
88 76 0.29
89 97 0.37
90 64 0.24
ACGTcount: A:0.36, C:0.10, G:0.24, T:0.29
Consensus pattern (90 bp):
GAAGTTTCCCCAAGGATAAAACTATACGAAGGGTAAATTTGAAATTTTTAGGAGAACGAGGTTGG
AGTATCCCCTCAGAATAGTGAGGAT
Found at i:51941 original size:166 final size:166
Alignment explanation
Indices: 51707--52146 Score: 614
Period size: 166 Copynumber: 2.6 Consensus size: 166
51697 TTCAAAACTA
* * * * * * * *
51707 ATGAAAATGAATTAATTTTTTAAAATTAATATAATATAAATCAAATGATGATATTTTATGAATTT
1 ATGAAAATGAATGAATTTTTGAGAATT-ATTTAATATAAATTAAATAATAATATTTGATGAATTT
* *
51772 TAAAAATTAAAAACCAAGAAAAATCCCTTCAAAAAAATTTATGGAGTAGAATATATCGTA-TTTG
65 TAAAAATTAAAAACCAAGAAAAATCCCTTCAAAAAAATTTATGGAGTAGAAAACATCGTATTTTG
* *
51836 AAGAAAAAAGATTTTCAAAGAAA-AAATTGAAAAATTT
130 AA-AAAAAAGAATTTCAAAGAAACAAATTAAAAAATTT
* *
51873 ATGAAAATGAAAGAATTTTTGAGAACTTATTTAATATGAATTAAATAATAATATTTGATGAATTT
1 ATGAAAATGAATGAATTTTTGAGAA-TTATTTAATATAAATTAAATAATAATATTTGATGAATTT
* * *
51938 TAAAAATTAAAAACCAAAAAAAATCCCCTCAAAAAAATATATGGAGTAGAAAACATCGTATTTTG
65 TAAAAATTAAAAACCAAGAAAAATCCCTTCAAAAAAATTTATGGAGTAGAAAACATCGTATTTTG
* *
52003 GAAAAAAAGAATTTCAAGGAAACAAATTAAAAAATTT
130 AAAAAAAAGAATTTCAAAGAAACAAATTAAAAAATTT
* *
52040 ATTAAAATGAATGAATTTTTGAGAATAGATTTAATATAAATTAAATAATAATATTTGATGAATTT
1 ATGAAAATGAATGAATTTTTGAGAAT-TATTTAATATAAATTAAATAATAATATTTGATGAATTT
* *
52105 TAAAAATTAAAAATCAAGAAAAATCCTTTCGAAAAAAATTTA
65 TAAAAATTAAAAACCAAGAAAAATCCCTTC-AAAAAAATTTA
52147 CAAAGAAGAA
Statistics
Matches: 241, Mismatches: 28, Indels: 8
0.87 0.10 0.03
Matches are distributed among these distances:
166 126 0.52
167 105 0.44
168 10 0.04
ACGTcount: A:0.52, C:0.06, G:0.10, T:0.32
Consensus pattern (166 bp):
ATGAAAATGAATGAATTTTTGAGAATTATTTAATATAAATTAAATAATAATATTTGATGAATTTT
AAAAATTAAAAACCAAGAAAAATCCCTTCAAAAAAATTTATGGAGTAGAAAACATCGTATTTTGA
AAAAAAAGAATTTCAAAGAAACAAATTAAAAAATTT
Found at i:59517 original size:13 final size:13
Alignment explanation
Indices: 59499--59523 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
59489 ACCAAGATCA
59499 TGTATCGATACAG
1 TGTATCGATACAG
59512 TGTATCGATACA
1 TGTATCGATACA
59524 AAGCAATATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.20, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAG
Found at i:60871 original size:21 final size:21
Alignment explanation
Indices: 60842--60882 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 21
60832 AAAGGTCAAA
60842 ACCCTAGAAAGTATAGATACAT
1 ACCCTAG-AAGTATAGATACAT
*
60864 ACCC-AGAAGTATCGATACA
1 ACCCTAGAAGTATAGATACA
60883 AATTGCTTTG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 12 0.67
21 2 0.11
22 4 0.22
ACGTcount: A:0.44, C:0.22, G:0.15, T:0.20
Consensus pattern (21 bp):
ACCCTAGAAGTATAGATACAT
Found at i:63777 original size:52 final size:52
Alignment explanation
Indices: 63629--63757 Score: 231
Period size: 52 Copynumber: 2.5 Consensus size: 52
63619 CGAAATATGA
* *
63629 AAATTTGCCTGCATGTATCGATACATTTCATAGTGTATCGATACATCTGGGC
1 AAATTTGCCTACATGTATCGATACATTTCATAGTGTATCGATACATCTAGGC
*
63681 AAATTTGCCTATATGTATCGATACATTTCATAGTGTATCGATACATCTAGGC
1 AAATTTGCCTACATGTATCGATACATTTCATAGTGTATCGATACATCTAGGC
63733 AAATTTGCCTACATGTATCGATACA
1 AAATTTGCCTACATGTATCGATACA
63758 AAGATCAGTG
Statistics
Matches: 73, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
52 73 1.00
ACGTcount: A:0.30, C:0.19, G:0.16, T:0.35
Consensus pattern (52 bp):
AAATTTGCCTACATGTATCGATACATTTCATAGTGTATCGATACATCTAGGC
Found at i:63784 original size:13 final size:13
Alignment explanation
Indices: 63766--63790 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
63756 CAAAGATCAG
63766 TGTATCGATACAA
1 TGTATCGATACAA
63779 TGTATCGATACA
1 TGTATCGATACA
63791 TTTGAGTAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:63858 original size:13 final size:13
Alignment explanation
Indices: 63840--63897 Score: 62
Period size: 13 Copynumber: 4.0 Consensus size: 13
63830 CGTAGTAATA
63840 TGTATCGATACAT
1 TGTATCGATACAT
63853 TGTATCGATACAAAACTT
1 TGTATCGATAC---A--T
63871 ATGTATCGATACAT
1 -TGTATCGATACAT
63885 TGTATCGATACAT
1 TGTATCGATACAT
63898 CACTTATGTA
Statistics
Matches: 39, Mismatches: 0, Indels: 12
0.76 0.00 0.24
Matches are distributed among these distances:
13 24 0.62
14 1 0.03
16 2 0.05
18 1 0.03
19 11 0.28
ACGTcount: A:0.34, C:0.16, G:0.14, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:63877 original size:19 final size:19
Alignment explanation
Indices: 63853--63917 Score: 70
Period size: 19 Copynumber: 3.7 Consensus size: 19
63843 ATCGATACAT
63853 TGTATCGATACAAAACTTA
1 TGTATCGATACAAAACTTA
63872 TGTATCGATAC---A--T-
1 TGTATCGATACAAAACTTA
**
63885 TGTATCGATACATCACTTA
1 TGTATCGATACAAAACTTA
63904 TGTATCGATACAAA
1 TGTATCGATACAAA
63918 TCATTGAAAT
Statistics
Matches: 38, Mismatches: 2, Indels: 12
0.73 0.04 0.23
Matches are distributed among these distances:
13 11 0.29
14 1 0.03
16 2 0.05
18 1 0.03
19 23 0.61
ACGTcount: A:0.37, C:0.17, G:0.12, T:0.34
Consensus pattern (19 bp):
TGTATCGATACAAAACTTA
Found at i:63879 original size:32 final size:32
Alignment explanation
Indices: 63838--63915 Score: 138
Period size: 32 Copynumber: 2.4 Consensus size: 32
63828 TTCGTAGTAA
63838 TATGTATCGATACATTGTATCGATACAAAACT
1 TATGTATCGATACATTGTATCGATACAAAACT
**
63870 TATGTATCGATACATTGTATCGATACATCACT
1 TATGTATCGATACATTGTATCGATACAAAACT
63902 TATGTATCGATACA
1 TATGTATCGATACA
63916 AATCATTGAA
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
32 44 1.00
ACGTcount: A:0.35, C:0.17, G:0.13, T:0.36
Consensus pattern (32 bp):
TATGTATCGATACATTGTATCGATACAAAACT
Found at i:64844 original size:49 final size:49
Alignment explanation
Indices: 64631--65061 Score: 497
Period size: 49 Copynumber: 8.6 Consensus size: 49
64621 TGACAAAAAG
* * * * * *
64631 GATGTCAATGTGCTGATTCATGGTCAGCGACATTTAGACTTGAAGATGAGAA
1 GATGCCAATGTGCTGATTCAAGGCCAGCGACA-TTGGTCTTAAAGAT--GAA
* * *
64683 GAATGCCAATGTGCTGATTCAAGGCAAACGACATTGGGTTTTAAAGATGACGAA
1 G-ATGCCAATGTGCTGATTCAAGGCCAGCGACATT-GGTCTTAAAGAT---GAA
* * * **
64737 GATGCCAATATGCTGATTCAAGGCCAGCGATACTAATCTTTAAAGATGAA
1 GATGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTC-TTAAAGATGAA
* * *
64787 TG-TGCCAATGTGCT-ATTTCCAGGCCAACGACATTGGACTTAAAGATGAA
1 -GATGCCAATGTGCTGA-TTCAAGGCCAGCGACATTGGTCTTAAAGATGAA
*
64836 GATACCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGATGAA
1 GATGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGATGAA
* * *
64885 GATGCCAATGTGCTGACTCAAGGCTAGCAACATTGGTCTTAAAGATGAA
1 GATGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGATGAA
* *
64934 GATGCCAATGTGCTAATTCAAGGCCAGTGACATTGGTCTTAAAGATGAA
1 GATGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGATGAA
* *
64983 GATGCCAATGTGCTGATTCAAGGCCAGCAACATTGGTCTTAAAGATAAA
1 GATGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGATGAA
* * *
65032 GGTGCCAATATGCTAATTCAAGGCCAGCGA
1 GATGCCAATGTGCTGATTCAAGGCCAGCGA
65062 TATTAGACTT
Statistics
Matches: 323, Mismatches: 48, Indels: 19
0.83 0.12 0.05
Matches are distributed among these distances:
48 1 0.00
49 213 0.66
50 30 0.09
51 1 0.00
52 4 0.01
53 70 0.22
54 4 0.01
ACGTcount: A:0.33, C:0.18, G:0.24, T:0.25
Consensus pattern (49 bp):
GATGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGATGAA
Found at i:65176 original size:30 final size:30
Alignment explanation
Indices: 65089--65281 Score: 313
Period size: 30 Copynumber: 6.6 Consensus size: 30
65079 GACGCCACCA
* *
65089 ACTTGTGTGCTTTTG--AAGGTTGCCACTG
1 ACTTGTGGGCTTTTGAAAAGGGTGCCACTG
* *
65117 ACTTGTGGGATTTTG--AAGGTTGCCACTG
1 ACTTGTGGGCTTTTGAAAAGGGTGCCACTG
*
65145 ACTTGTGGGCTTTTGAAAAGGGTGGCACTG
1 ACTTGTGGGCTTTTGAAAAGGGTGCCACTG
65175 ACTTGTGGGCTTTTGAAAAGGGTGCCACTG
1 ACTTGTGGGCTTTTGAAAAGGGTGCCACTG
65205 ACTTGTGGGCTTTTGAAAAGGGTGCCACTG
1 ACTTGTGGGCTTTTGAAAAGGGTGCCACTG
65235 ACTTGTGGGCTTTTGAAAAGGGTGCCACTG
1 ACTTGTGGGCTTTTGAAAAGGGTGCCACTG
65265 ACTTGTGGGCTTTTGAA
1 ACTTGTGGGCTTTTGAA
65282 GGGTGAGGAA
Statistics
Matches: 157, Mismatches: 6, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
28 40 0.25
30 117 0.75
ACGTcount: A:0.19, C:0.16, G:0.33, T:0.33
Consensus pattern (30 bp):
ACTTGTGGGCTTTTGAAAAGGGTGCCACTG
Found at i:66683 original size:4 final size:4
Alignment explanation
Indices: 66666--66755 Score: 51
Period size: 4 Copynumber: 21.8 Consensus size: 4
66656 GGACCCTTTT
* * *
66666 TTTG TTTG TCTG TTTG TTTTT TTTG TTTTG TTT- TTT- TTT- TTTT TTTG
1 TTTG TTTG TTTG TTTG -TTTG TTTG -TTTG TTTG TTTG TTTG TTTG TTTG
* * *
66713 TTTTT TTTG TCTTT TTTT TTTG TTTTG TTTTG TTTG TTTG TTT
1 -TTTG TTTG T-TTG TTTG TTTG -TTTG -TTTG TTTG TTTG TTT
66756 TTTTTTTTTT
Statistics
Matches: 71, Mismatches: 9, Indels: 12
0.77 0.10 0.13
Matches are distributed among these distances:
3 9 0.13
4 40 0.56
5 22 0.31
ACGTcount: A:0.00, C:0.02, G:0.14, T:0.83
Consensus pattern (4 bp):
TTTG
Found at i:66685 original size:18 final size:17
Alignment explanation
Indices: 66664--66757 Score: 79
Period size: 17 Copynumber: 5.5 Consensus size: 17
66654 CCGGACCCTT
66664 TTTTTGTTTGTCTGTTTG
1 TTTTT-TTTGTCTGTTTG
*
66682 TTTTTTTTGTTTTGTTT-
1 TTTTTTTTG-TCTGTTTG
66699 TTTTTTTT-T-T-TTTG
1 TTTTTTTTGTCTGTTTG
* *
66713 TTTTTTTTGTCTTTTTT
1 TTTTTTTTGTCTGTTTG
*
66730 TTTTGTTTTGTTTTGTTTG
1 TTTT-TTTTG-TCTGTTTG
66749 TTTGTTTTT
1 TTT-TTTTT
66758 TTTTTTTTGC
Statistics
Matches: 63, Mismatches: 5, Indels: 15
0.76 0.06 0.18
Matches are distributed among these distances:
13 3 0.05
14 9 0.14
15 2 0.03
16 1 0.02
17 19 0.30
18 16 0.25
19 12 0.19
20 1 0.02
ACGTcount: A:0.00, C:0.02, G:0.14, T:0.84
Consensus pattern (17 bp):
TTTTTTTTGTCTGTTTG
Found at i:66686 original size:1 final size:1
Alignment explanation
Indices: 66682--66765 Score: 78
Period size: 1 Copynumber: 84.0 Consensus size: 1
66672 TGTCTGTTTG
* * * * * * * *
66682 TTTTTTTTGTTTTGTTTTTTTTTTTTTTTTGTTTTTTTTGTCTTTTTTTTTTGTTTTGTTTTGTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
* *
66747 TGTTTGTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTT
66766 GCGAATGACG
Statistics
Matches: 63, Mismatches: 20, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
1 63 1.00
ACGTcount: A:0.00, C:0.01, G:0.11, T:0.88
Consensus pattern (1 bp):
T
Found at i:66695 original size:22 final size:22
Alignment explanation
Indices: 66662--66766 Score: 117
Period size: 22 Copynumber: 4.8 Consensus size: 22
66652 ATCCGGACCC
*
66662 TTTTTTTG-TTTGTCTGTTTGT
1 TTTTTTTGTTTTGTTTGTTTGT
* *
66683 TTTTTTTGTTTTGTTTTTTTTT
1 TTTTTTTGTTTTGTTTGTTTGT
*
66705 TTTTTTTGTTTTTTTTGTCTT-T
1 TTTTTTTGTTTTGTTTGT-TTGT
66727 TTTTTTTGTTTTGTTTTGTTTGT
1 TTTTTTTGTTTTG-TTTGTTTGT
*
66750 TTGTTTTT-TTTTTTTTG
1 TT-TTTTTGTTTTGTTTG
66767 CGAATGACGC
Statistics
Matches: 72, Mismatches: 7, Indels: 9
0.82 0.08 0.10
Matches are distributed among these distances:
21 8 0.11
22 45 0.62
23 14 0.19
24 5 0.07
ACGTcount: A:0.00, C:0.02, G:0.13, T:0.85
Consensus pattern (22 bp):
TTTTTTTGTTTTGTTTGTTTGT
Found at i:66696 original size:5 final size:5
Alignment explanation
Indices: 66678--66766 Score: 90
Period size: 4 Copynumber: 19.8 Consensus size: 5
66668 TGTTTGTCTG
66678 TTTGT TTT-T TTTGT TTTGT TTT-T TTT-T TTT-T TTTGT TTT-T TTTGT
1 TTTGT TTTGT TTTGT TTTGT TTTGT TTTGT TTTGT TTTGT TTTGT TTTGT
* *
66723 CTT-T TTT-T TTTGT TTTGT TTTG- TTTG- TTTGT TTT-T TTTTT TTTG
1 TTTGT TTTGT TTTGT TTTGT TTTGT TTTGT TTTGT TTTGT TTTGT TTTG
66767 CGAATGACGC
Statistics
Matches: 75, Mismatches: 3, Indels: 12
0.83 0.03 0.13
Matches are distributed among these distances:
4 39 0.52
5 36 0.48
ACGTcount: A:0.00, C:0.01, G:0.12, T:0.87
Consensus pattern (5 bp):
TTTGT
Found at i:66716 original size:31 final size:30
Alignment explanation
Indices: 66678--66765 Score: 124
Period size: 31 Copynumber: 2.9 Consensus size: 30
66668 TGTTTGTCTG
*
66678 TTTGTTTTTTTTGTTTTGTTTTTTTTTTTTT
1 TTTGTTTTTTTTGTTTT-TTTTTTTTTTTGT
66709 TTTGTTTTTTTTGTCTTTTTTTTTTGTTTTGT
1 TTTGTTTTTTTTGT-TTTTTTTTTT-TTTTGT
*
66741 TTTG-TTTGTTTGTTTTTTTTTTTTT
1 TTTGTTTTTTTTGTTTTTTTTTTTTT
66766 GCGAATGACG
Statistics
Matches: 53, Mismatches: 2, Indels: 6
0.87 0.03 0.10
Matches are distributed among these distances:
29 2 0.04
30 10 0.19
31 29 0.55
32 12 0.23
ACGTcount: A:0.00, C:0.01, G:0.11, T:0.88
Consensus pattern (30 bp):
TTTGTTTTTTTTGTTTTTTTTTTTTTTTGT
Found at i:66761 original size:18 final size:18
Alignment explanation
Indices: 66663--66766 Score: 99
Period size: 18 Copynumber: 5.8 Consensus size: 18
66653 TCCGGACCCT
*
66663 TTTTTTGTTTGTCTGTTTG
1 TTTTTT-TTTGTTTGTTTG
66682 -TTTTTTTTGTTTTGTTT-
1 TTTTTTTTTG-TTTGTTTG
*
66699 TTTTTTTTTTTTTGTTT-
1 TTTTTTTTTGTTTGTTTG
*
66716 TTTTTGTCTTT-TTTTTTTG
1 TTTTT-T-TTTGTTTGTTTG
*
66735 TTTTGTTTTGTTTGTTTG
1 TTTTTTTTTGTTTGTTTG
*
66753 TTTTTTTTTTTTTG
1 TTTTTTTTTGTTTG
66767 CGAATGACGC
Statistics
Matches: 72, Mismatches: 7, Indels: 13
0.78 0.08 0.14
Matches are distributed among these distances:
17 19 0.26
18 46 0.64
19 7 0.10
ACGTcount: A:0.00, C:0.02, G:0.13, T:0.85
Consensus pattern (18 bp):
TTTTTTTTTGTTTGTTTG
Found at i:80754 original size:52 final size:52
Alignment explanation
Indices: 80606--80734 Score: 231
Period size: 52 Copynumber: 2.5 Consensus size: 52
80596 CGAAATATGA
80606 AAATTTGCCTGCATGTATCGATACATTTCATAGTGTATCGATACATCTGGGC
1 AAATTTGCCTGCATGTATCGATACATTTCATAGTGTATCGATACATCTGGGC
*
80658 AAATTTGCCTGTATGTATCGATACATTTCATAGTGTATCGATACATCTGGGC
1 AAATTTGCCTGCATGTATCGATACATTTCATAGTGTATCGATACATCTGGGC
* *
80710 AAATTTTCCTACATGTATCGATACA
1 AAATTTGCCTGCATGTATCGATACA
80735 AAGATCAGTG
Statistics
Matches: 73, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
52 73 1.00
ACGTcount: A:0.29, C:0.19, G:0.17, T:0.36
Consensus pattern (52 bp):
AAATTTGCCTGCATGTATCGATACATTTCATAGTGTATCGATACATCTGGGC
Found at i:80761 original size:13 final size:13
Alignment explanation
Indices: 80743--80767 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
80733 CAAAGATCAG
80743 TGTATCGATACAA
1 TGTATCGATACAA
80756 TGTATCGATACA
1 TGTATCGATACA
80768 TTTGAGTAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:80847 original size:19 final size:19
Alignment explanation
Indices: 80823--80871 Score: 89
Period size: 19 Copynumber: 2.6 Consensus size: 19
80813 AATACATTGC
80823 ATCGATACAAAACTTATGT
1 ATCGATACAAAACTTATGT
*
80842 ATCGATACAACACTTATGT
1 ATCGATACAAAACTTATGT
80861 ATCGATACAAA
1 ATCGATACAAA
80872 TCATTGAAAT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
19 28 1.00
ACGTcount: A:0.43, C:0.18, G:0.10, T:0.29
Consensus pattern (19 bp):
ATCGATACAAAACTTATGT
Found at i:82873 original size:12 final size:11
Alignment explanation
Indices: 82856--82889 Score: 50
Period size: 12 Copynumber: 2.9 Consensus size: 11
82846 TCAACCATCA
82856 AAGATGATGAT
1 AAGATGATGAT
82867 GAAGATGATGAT
1 -AAGATGATGAT
82879 AATGATGATGA
1 AA-GATGATGA
82890 AAAAGTTAAC
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
11 2 0.10
12 19 0.90
ACGTcount: A:0.44, C:0.00, G:0.29, T:0.26
Consensus pattern (11 bp):
AAGATGATGAT
Found at i:87358 original size:32 final size:33
Alignment explanation
Indices: 87317--87396 Score: 126
Period size: 32 Copynumber: 2.5 Consensus size: 33
87307 CATTGAATGA
**
87317 TGTATCGATACAAGGATCTTAGT-TTGATACAT
1 TGTATCGATACAAGGATCTTAGTATCAATACAT
*
87349 TGTATCGATACAAGGATCTTAGTATCAATCCAT
1 TGTATCGATACAAGGATCTTAGTATCAATACAT
87382 TGTATCGATACAAGG
1 TGTATCGATACAAGG
87397 GCACTATTTG
Statistics
Matches: 44, Mismatches: 3, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
32 23 0.52
33 21 0.48
ACGTcount: A:0.33, C:0.15, G:0.19, T:0.34
Consensus pattern (33 bp):
TGTATCGATACAAGGATCTTAGTATCAATACAT
Found at i:89349 original size:20 final size:21
Alignment explanation
Indices: 89326--89394 Score: 77
Period size: 22 Copynumber: 3.1 Consensus size: 21
89316 ATTTTTGAAA
89326 AAGGGAAG-AAATTTTTTATT
1 AAGGGAAGAAAATTTTTTATT
* *
89346 AAGGGGGAGAAAAATTTTTATT
1 AA-GGGAAGAAAATTTTTTATT
89368 AAGGGAGAGAAAAGTTTTTTAATT
1 AAGGGA-AGAAAA-TTTTTT-ATT
89392 AAG
1 AAG
89395 AGGGAGTTAT
Statistics
Matches: 40, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
20 2 0.05
21 8 0.20
22 19 0.47
23 5 0.12
24 6 0.15
ACGTcount: A:0.42, C:0.00, G:0.25, T:0.33
Consensus pattern (21 bp):
AAGGGAAGAAAATTTTTTATT
Found at i:89982 original size:20 final size:21
Alignment explanation
Indices: 89951--89989 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
89941 AAGTCAAAAC
89951 CCTAGAAAGTATCGATACAGA
1 CCTAGAAAGTATCGATACAGA
*
89972 CCTAG-AAGTATTGATACA
1 CCTAGAAAGTATCGATACA
89990 TATTGCTTTG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 12 0.71
21 5 0.29
ACGTcount: A:0.41, C:0.18, G:0.18, T:0.23
Consensus pattern (21 bp):
CCTAGAAAGTATCGATACAGA
Found at i:90599 original size:14 final size:14
Alignment explanation
Indices: 90577--90606 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
90567 TGGGATAAAT
*
90577 TTATTTATATATTA
1 TTATATATATATTA
90591 TTATATATATATTA
1 TTATATATATATTA
90605 TT
1 TT
90607 TTAATTTCTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (14 bp):
TTATATATATATTA
Found at i:93255 original size:161 final size:158
Alignment explanation
Indices: 93066--93542 Score: 538
Period size: 161 Copynumber: 2.9 Consensus size: 158
93056 CATTTAATCA
93066 CCATTAAATCA-TTTTGGAAAAATTAATTCATTTTCATGAGTTTTGGATTTTTTTGAAATCCCTT
1 CCATTAAATCAGTTTT-G-AAAATTAATTCATTTTCATGAGTTTTGGATTTTTTTGAAATCCCTT
* *
93130 TTTTCCCAAAACACGAAGTTTTCAATTCTATAAATAGTTCTGGGGGGATTTTCTTTGGTCT-AAT
64 TTTTCCCAAAA-ACG-AGTTTTCTATTCCATAAATA-TTCTGGGGGGATTTTCTTTGGTCTAAAT
*
93194 TTTTAAAATATATCTAATAATGACATGAAATTC
126 TTTTAAAATGTATCTAATAATGACATGAAATTC
*
93227 CCATTAAATCAGTTTTGAAAACTTAATTCATGAATTT--TG-GATTTT--A-TTCTTTGAAATCC
1 CCATTAAATCAGTTTTGAAAA-TTAATTCAT---TTTCATGAG-TTTTGGATTTTTTTGAAATCC
* * * * *
93286 CTATTTTCTCGAAAAACTGAGTTTTCTATTCCATAAATATTTTCGGGAGGATTTTCTTTAGTCTA
61 CTTTTTTC-CCAAAAAC-GAGTTTTCTATTCCATAAATATTCT-GGGGGGATTTTCTTTGGTCT-
* * *
93351 AAATTTTTAAAATGTATCTAACAATGTCATGGAATTC
122 AAATTTTTAAAATGTATCTAATAATGACATGAAATTC
*
93388 CCACTAAATCAGTTTTGAAAATTAATTCATTTTCATGAGTTTTGGATTTTTTTCTTTGAAATCCC
1 CCATTAAATCAGTTTTGAAAATTAATTCATTTTCATGAGTTTTGGA---TTTT-TTTGAAATCCC
*
93453 TTTTTTTTCCCAAAATAATCGAGTTTTCTATTCCATAAATATTTCCGGGGGGATTTTCTTTGGTC
62 --TTTTTTCCC-AAA-AA-CGAGTTTTCTATTCCATAAATA-TTCTGGGGGGATTTTCTTTGGTC
*
93518 TAAAATTTTTGAAATGTATCTAATA
121 T-AAATTTTTAAAATGTATCTAATA
93543 TTGTCATTGA
Statistics
Matches: 267, Mismatches: 22, Indels: 46
0.80 0.07 0.14
Matches are distributed among these distances:
157 3 0.01
158 3 0.01
159 63 0.24
160 21 0.08
161 75 0.28
162 10 0.04
164 3 0.01
165 2 0.01
166 11 0.04
167 1 0.00
168 9 0.03
169 63 0.24
170 3 0.01
ACGTcount: A:0.30, C:0.14, G:0.12, T:0.44
Consensus pattern (158 bp):
CCATTAAATCAGTTTTGAAAATTAATTCATTTTCATGAGTTTTGGATTTTTTTGAAATCCCTTTT
TTCCCAAAAACGAGTTTTCTATTCCATAAATATTCTGGGGGGATTTTCTTTGGTCTAAATTTTTA
AAATGTATCTAATAATGACATGAAATTC
Found at i:93523 original size:169 final size:167
Alignment explanation
Indices: 93030--93577 Score: 603
Period size: 169 Copynumber: 3.3 Consensus size: 167
93020 CTAGGTTTTT
* * ** *
93030 AATTTTTAAAAT-TCATCTAATATTATCATTTAA-TCACCATTAAATCA-TTTTGGAAAAATTAA
1 AATTTTTAAAATGT-ATCTAATAATGTCATGGAATTC-CCACTAAATCAGTTTT-G-AAAATTAA
*
93092 TTCATTTTCATGAGTTTTGGA---TTTT-TTTGAAATCCC-TTTTTTCCCAAAACA-CGAAGTTT
62 TTCATTTTCATGAGTTTTGGATTTTTTTCTTTGAAATCCCTTTTTTTCCCAAAAAATCG-AGTTT
* * * *
93151 TCAATTCTATAAATAGTTCTGGGGGGATTTTCTTTGGTCT--
126 TCTATTCCATAAATATTTCCGGGGGGATTTTCTTTGGTCTAA
* * * *
93191 AATTTTTAAAATATATCTAATAATGACATGAAATTCCCATTAAATCAGTTTTGAAAACTT-A---
1 AATTTTTAAAATGTATCTAATAATGTCATGGAATTCCCACTAAATCAGTTTTGAAAA-TTAATTC
* * * * *
93252 A--TTCATGAATTTTGGATTTTATTCTTTGAAATCCC-TATTTTCTCGAAAAA-CTGAGTTTTCT
65 ATTTTCATGAGTTTTGGATTTTTTTCTTTGAAATCCCTTTTTTTCCCAAAAAATC-GAGTTTTCT
* * *
93313 ATTCCATAAATATTTTCGGGAGGATTTTCTTTAGTCTAA
129 ATTCCATAAATATTTCCGGGGGGATTTTCTTTGGTCTAA
*
93352 AATTTTTAAAATGTATCTAACAATGTCATGGAATTCCCACTAAATCAGTTTTGAAAATTAATTCA
1 AATTTTTAAAATGTATCTAATAATGTCATGGAATTCCCACTAAATCAGTTTTGAAAATTAATTCA
93417 TTTTCATGAGTTTTGGATTTTTTTCTTTGAAATCCCTTTTTTTTCCCAAAATAATCGAGTTTTCT
66 TTTTCATGAGTTTTGGATTTTTTTCTTTGAAATCCC-TTTTTTTCCCAAAA-AATCGAGTTTTCT
93482 ATTCCATAAATATTTCCGGGGGGATTTTCTTTGGTCTAA
129 ATTCCATAAATATTTCCGGGGGGATTTTCTTTGGTCTAA
* * * * * * * *
93521 AATTTTTGAAATGTATCTAATATTGTCATTGAACTCTCAGTAATTTAGTTTTGAAAA
1 AATTTTTAAAATGTATCTAATAATGTCATGGAATTCCCACTAAATCAGTTTTGAAAA
93578 AATTATTTTA
Statistics
Matches: 326, Mismatches: 40, Indels: 34
0.81 0.10 0.09
Matches are distributed among these distances:
155 14 0.04
157 1 0.00
158 3 0.01
159 61 0.19
160 8 0.02
161 93 0.29
162 7 0.02
164 1 0.00
166 32 0.10
168 10 0.03
169 95 0.29
170 1 0.00
ACGTcount: A:0.31, C:0.13, G:0.11, T:0.44
Consensus pattern (167 bp):
AATTTTTAAAATGTATCTAATAATGTCATGGAATTCCCACTAAATCAGTTTTGAAAATTAATTCA
TTTTCATGAGTTTTGGATTTTTTTCTTTGAAATCCCTTTTTTTCCCAAAAAATCGAGTTTTCTAT
TCCATAAATATTTCCGGGGGGATTTTCTTTGGTCTAA
Found at i:94098 original size:15 final size:14
Alignment explanation
Indices: 94079--94129 Score: 66
Period size: 14 Copynumber: 3.4 Consensus size: 14
94069 AAAAAGAAGG
94079 AAAAAAGAGAGAAA
1 AAAAAAGAGAGAAA
*
94093 AGAAAAAGGAAGAAAAA
1 A-AAAAA-G-AGAGAAA
94110 AAAAAAGAGAGAAA
1 AAAAAAGAGAGAAA
94124 AAAAAA
1 AAAAAA
94130 CTAGGAAAAT
Statistics
Matches: 32, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
14 13 0.41
15 6 0.19
16 6 0.19
17 7 0.22
ACGTcount: A:0.80, C:0.00, G:0.20, T:0.00
Consensus pattern (14 bp):
AAAAAAGAGAGAAA
Found at i:94099 original size:16 final size:16
Alignment explanation
Indices: 94078--94129 Score: 72
Period size: 15 Copynumber: 3.4 Consensus size: 16
94068 AAAAAAGAAG
94078 GAAAAAAGAGAGAAAA
1 GAAAAAAGAGAGAAAA
*
94094 GAAAAAGGA-AGAAAA
1 GAAAAAAGAGAGAAAA
*
94109 AAAAAAAGAGAGAAAA
1 GAAAAAAGAGAGAAAA
94125 -AAAAA
1 GAAAAA
94130 CTAGGAAAAT
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
15 18 0.56
16 14 0.44
ACGTcount: A:0.79, C:0.00, G:0.21, T:0.00
Consensus pattern (16 bp):
GAAAAAAGAGAGAAAA
Found at i:96039 original size:155 final size:155
Alignment explanation
Indices: 95755--96180 Score: 348
Period size: 155 Copynumber: 2.8 Consensus size: 155
95745 GGTGTACCCA
* ** *
95755 TAAGGGTATTTTCATAATTTTTTAGAATCGAGTCCTAGGTTGTCATTGGGTCCACTTTAATGTTG
1 TAAGGGTATTTTCATAATTTTTCAGAATCGAGTCCTAGGTTGTCACCGAGTCCACTTTAATGTTG
* * * ** ** *
95820 ATGGTGGGTATTTAGGATAGGTTCATTCCATTTTGTAGTCCTTTTTAAGTCCTCTAGGGATATCA
66 AAGATGGATATTTAGGATAGGTTCATTCCAGATTAAAATCCTTTTTAAGTCCTCTAGGGATATCA
95885 AGCACTTCTACTCGAGGATATCCCT
131 AGCACTTCTACTCGAGGATATCCCT
* * ** *
95910 TAAGGGTATTTTGATAATTTTTCAGAATCGAGTCCTAGGTTGTCCCCGAGTCTTCTTTTATGTCT
1 TAAGGGTATTTTCATAATTTTTCAGAATCGAGTCCTAGGTTGTCACCGAGTCCACTTTAATGT-T
* * * * *
95975 -AAGATGGATATTTAGGGTAGGTTCA-TCCGGATTAAAATCTTTTTTAAAGTCCTTTAGGGGTAT
65 GAAGATGGATATTTAGGATAGGTTCATTCCAGATTAAAATCCTTTTT-AAGTCCTCTAGGGATAT
* * * * * *
96038 CAAGTACTTTTATATCAAAGATATCCCA
129 CAAGCACTTCTA-CTCGAGGATATCCCT
* * * ** ** *
96066 T-AGAGGCATTTTCGTAAATTTTT--GAA-CTGAGTCTTAGGTTGTCATTG-GATCTGCTTTTAT
1 TAAG-GGTATTTTCAT-AATTTTTCAGAATC-GAGTCCTAGGTTGTCACCGAG-TCCACTTTAAT
** * ***
96126 ACTGAAGATAGATATTTAGGATAGGTTCA-TCCCTTTTAAAATCC-TTTTAAGTCCT
62 GTTGAAGATGGATATTTAGGATAGGTTCATTCCAGATTAAAATCCTTTTTAAGTCCT
96181 TTAGAGGTAT
Statistics
Matches: 219, Mismatches: 44, Indels: 18
0.78 0.16 0.06
Matches are distributed among these distances:
153 7 0.03
154 20 0.09
155 164 0.75
156 21 0.10
157 7 0.03
ACGTcount: A:0.25, C:0.15, G:0.20, T:0.40
Consensus pattern (155 bp):
TAAGGGTATTTTCATAATTTTTCAGAATCGAGTCCTAGGTTGTCACCGAGTCCACTTTAATGTTG
AAGATGGATATTTAGGATAGGTTCATTCCAGATTAAAATCCTTTTTAAGTCCTCTAGGGATATCA
AGCACTTCTACTCGAGGATATCCCT
Found at i:97086 original size:13 final size:13
Alignment explanation
Indices: 97068--97092 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
97058 ATAATGCACA
97068 GTATCGATACATT
1 GTATCGATACATT
97081 GTATCGATACAT
1 GTATCGATACAT
97093 GACCAAATGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
GTATCGATACATT
Found at i:99099 original size:34 final size:35
Alignment explanation
Indices: 99061--99127 Score: 102
Period size: 37 Copynumber: 1.9 Consensus size: 35
99051 CCTTACAACA
99061 CTATC-TTTC-AAGGCTAAGATAGAAACCTCTCTCT
1 CTATCTTTTCAAAGGCTAAGATAG-AACCTCTCTCT
99095 CTATCTTTTTCAAAGGCTAAGATAGAACCTCTC
1 CTATC-TTTTCAAAGGCTAAGATAGAACCTCTC
99128 AATCACTTAG
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
34 5 0.17
36 12 0.40
37 13 0.43
ACGTcount: A:0.30, C:0.25, G:0.12, T:0.33
Consensus pattern (35 bp):
CTATCTTTTCAAAGGCTAAGATAGAACCTCTCTCT
Found at i:99627 original size:13 final size:13
Alignment explanation
Indices: 99597--99635 Score: 51
Period size: 13 Copynumber: 3.0 Consensus size: 13
99587 ACTGTTTATG
* *
99597 ATGTATTGACACA
1 ATGTATCGATACA
*
99610 CTGTATCGATACA
1 ATGTATCGATACA
99623 ATGTATCGATACA
1 ATGTATCGATACA
99636 TGAATAGTGA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
13 22 1.00
ACGTcount: A:0.36, C:0.18, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:99736 original size:21 final size:22
Alignment explanation
Indices: 99706--99749 Score: 81
Period size: 21 Copynumber: 2.0 Consensus size: 22
99696 ACAGTGACCT
99706 ATGAATAGTGATGTATCGATAC
1 ATGAATAGTGATGTATCGATAC
99728 ATGAA-AGTGATGTATCGATAC
1 ATGAATAGTGATGTATCGATAC
99749 A
1 A
99750 AATTTGGCTA
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
21 17 0.77
22 5 0.23
ACGTcount: A:0.39, C:0.09, G:0.23, T:0.30
Consensus pattern (22 bp):
ATGAATAGTGATGTATCGATAC
Found at i:99831 original size:33 final size:32
Alignment explanation
Indices: 99771--99835 Score: 96
Period size: 32 Copynumber: 2.0 Consensus size: 32
99761 TGCCAATGAC
*
99771 CTGTATCGATACATATTGTGTGTATCGATACT
1 CTGTATCGATACATATTATGTGTATCGATACT
99803 CTGTATCGATACAT-TTAAATGTGTATCGATACT
1 CTGTATCGATACATATT--ATGTGTATCGATACT
99836 TTTCAGGGTT
Statistics
Matches: 30, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
31 2 0.07
32 14 0.47
33 14 0.47
ACGTcount: A:0.28, C:0.15, G:0.17, T:0.40
Consensus pattern (32 bp):
CTGTATCGATACATATTATGTGTATCGATACT
Found at i:104971 original size:475 final size:471
Alignment explanation
Indices: 102534--109281 Score: 7220
Period size: 475 Copynumber: 14.2 Consensus size: 471
102524 GTAAATGTTG
* * * * *
102534 TTTTCTTGCAACACCAAAGCTTCAATCTTATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCC
1 TTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAAGGAATGTGTTTTTGGTTCCC
* ** * * ** *
102599 AATCTTGAAAAGAATTGAGGTTGTTACGAGAATCGATGTTTGTCTTATTCGAGTGATGAATTTTG
66 AATCTTGAAAAGAATGGAGACTGTTACGAGAATCAATGCTTGTCTTATTTAAGGGATGAATTTTG
* * * *
102664 ATTTTAAAGAAAAT-GAGTCAAAAAAAAAGATTTCCATGCAAAAGAAAATCATCAATATCGTTTA
131 ATTTTAAGGAAAATAG-GGC-AAAGAAAAGATTTCCATGCAAAA-AAAATCATCAATATCATTTA
* * * * * *
102728 CCCTAATGAA-GAGAGTGTGTTTGTAGTGCCGAATCACAAAATGAATGAAGATCCTAACTAGAAT
193 TCCTAAT-AAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAAT
* * * * * *
102792 CCATATTTATCTCATTCGAGG-ATGAACTTAGACTTTGCAAAAATAGGTGAGAAAAAAGCCTTTC
257 CCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTG-GGAAAAAGCCTTTC
* * * * *
102856 TTACGAAACCAAAGCATCATTATCATTTATCCTAATGAGAAGACTATGTTTATGGTGCCTAACCC
321 TTGCGAAACCAAAGCATTAATATCATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAA-TC
* * * *
102921 GGAAAAGAATAGGGATTAGTATGGCTATTCATGTTTGTCTTATATAATAGATAAACTTTGATTCT
385 TGAAAAGAATAGGGATTAGTATGG-TATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCT
*
102986 ATCAAAAATGGTGCATAGAAAA-C
449 ATCAAAAATGGTG-AAAGAAAAGC
* * * * * * * * *
103009 ATTTTATTGCGATACTAAAGCATCAATGTCATGTATCCTAAAGAAATGATTGTGGTCTTGGTTCA
1 -TTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAAGGAATGTGTTTTTGGTTCC
** * * * *
103074 CAATCTTTTAAAGAATGGAGATTGTTACGAGAATCGATGCTTGTCATATTTAAGGGATAAATTTT
65 CAATCTTGAAAAGAATGGAGACTGTTACGAGAATCAATGCTTGTCTTATTTAAGGGATGAATTTT
* * **
103139 GGTTTTAAGGAAAAT-GTGGCAAAGAAAAAATTTTAATGCAAAAAAAAATCATCAATATCATTTA
130 GATTTTAAGGAAAATAG-GGCAAAGAAAAGATTTCCATGC-AAAAAAAATCATCAATATCATTTA
* * *
103203 TCCTAATGAGGAGAATGTGTTTATAGTGTCC-AACCACAAAATTAATGAAGATCATTACTAGAAT
193 TCCTAATAAGGAGAATGTGTTTATAGTG-CCTAATCACAAAATGAATGAAGATCATTACTAGAAT
* * * * * *
103267 CCATGTTTGTCTCATTTGACGTATGAACTTAGAATTTTCAAAAATTGGTGGGAAAAATGTCATTC
257 CCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAA-GCCTTTC
* * * *
103332 TTGTGAAACCAAAGCATCAATATCATGAATTCTAATGAGAAGACTATGTTTATGGTGCCTAATCT
321 TTGCGAAACCAAAGCATTAATATCATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATC-
* * * * * **
103397 TGAAAGGAATAGGGATTAGTATAAGTTTTCGTATTTGTCTTATTTAAGAGACAAACTTCAATTCT
385 TGAAAAGAATAGGGATTAGTAT-GGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCT
* *
103462 ATCAAAAACGATGGAAAGAAAAGC
449 ATCAAAAATGGT-GAAAGAAAAGC
* * * **
103486 TTTTCTTGC-AGCACCAAAGCATCAAT-TACATGCATCCTAATGAAGGGAATGTGCTTTTCATTC
1 TTTTCTTGCGA-CACCAAAGCATCAATGT-CATGTATCCTAATGAAAGGAATGTGTTTTTGGTTC
* * * * *
103549 CCAATCTTGAAAATAGTGGAGACTATTACAAGAATTGAA-GCTTGTCTTATTTAAGGGATGAATT
64 CCAATCTTGAAAAGAATGGAGACTGTTACGAGAA-TCAATGCTTGTCTTATTTAAGGGATGAATT
* * * * * *
103613 TTGATTTAAAGGAAAATAGGGTAAAGAAAAGATTTTCATGTGAAAGAAAATCATCAATATCTTTT
128 TTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATG-CAAAAAAAATCATCAATATCATTT
* * * * *
103678 ACCCTAATAAGTAGAATGTATTTATAGTGTCTAATCACAAAATGAATGAAGATCGTTACTAGAAT
192 ATCCTAATAAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAAT
* *
103743 CCATGTTTGTCTCATTTGAGGCATGAACTTAAACTTTTGA-AAAAATT-GTGAGAAATAAGCCTT
257 CCATGTTTGTCTCATTTGAGGCATGAACTTAGAC-TTT-ACAAAAATTGGTGGGAAA-AAGCCTT
* * * *
103806 TCTTGCGAAGCCAAAGCATTGATATCTTGTATTCTAATGAGAA-ATCTATGTTTATGGTGCCTAA
319 TCTTGCGAAACCAAAGCATTAATATCATGTATCCTAATGAGAAGA-CTATGTTTATGGTGCCTAA
* *
103870 TCCT-AAAA-AA-AGGGGATTAATATGGGTATTCATGTTTGTCTTATTTAAGAGACAAATTTTGA
383 T-CTGAAAAGAATA-GGGATTAGTAT-GGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGA
*
103932 TTTTATCAAAAATGGTTGAAAGAAAAGC
445 TTCTATCAAAAATGG-TGAAAGAAAAGC
* * * * * *
103960 TTTTCTTGCGACACCAAACCATCAATGCCATGTATCCTAA-AAAAGGGAATATGCTTTTGGTTCT
1 TTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAA-GGAATGTGTTTTTGGTTCC
* * * * * *
104024 CGATATTAAAAAGAATGGAGA-TAGTTACGAGAATCAATGCTTGCCTTATTTAAGGGATGCACTT
65 CAATCTTGAAAAGAATGGAGACT-GTTACGAGAATCAATGCTTGTCTTATTTAAGGGATGAATTT
* * * * *
104088 TGATTTTTAGGAAAATACGGTAAAGAAAAATATTTCCATGCAAAAAAAATTATCAATATCATTTA
129 TGATTTTAAGGAAAATAGGGCAAAG-AAAAGATTTCCATGCAAAAAAAATCATCAATATCATTTA
* * * *
104153 TCCTATTGAGGAGAATGTGTTTATAGTGCCTAATCACAAAGTGAATGAAGATCATTACTAGAAGC
193 TCCTAATAAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATC
* * * * * * *
104218 GATGTTTGTCTCATTTGA-GTACGAACTTAGACTTTGC-AAAATTGGTGGAAAGAAAGCTTTTCC
258 CATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAA-AAAGCCTTTCT
* * * * ** * *
104281 TGTGAAGCCAAAGCTTTAATTTTGTCTATCCTAATGAGAAGACTATATTTATGGTGCCTAATCCT
322 TGCGAAACCAAAGCATTAATATCATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAAT-CT
* * * ** * *
104346 AAAAAGAGTAGGTAACAGCATGCGTATTCATGTTTG-CAATATTTAAGAGACAAACTTTGATTCT
386 GAAAAGAATAGGGATTAGTATG-GTATTCATGTTTGTC-TTATTTAAGAGACAAACTTTGATTCT
104410 ATCAAAAATGGTTGAAAGAAAAGC
449 ATCAAAAATGG-TGAAAGAAAAGC
* * * *
104434 TTTTCTTGC-AGCACCAAAGCTTCAATGTCATATATCCTAATGAATGGAATGTGATTTTGGTTCC
1 TTTTCTTGCGA-CACCAAAGCATCAATGTCATGTATCCTAATGAAAGGAATGTGTTTTTGGTTCC
* * * * ** * * *
104498 CAATCTTGAAAAGAATGGAGAGTGTCACGAGAATTAATACTTCCCTTTTTTAAGGGATGCACTTT
65 CAATCTTGAAAAGAATGGAGACTGTTACGAGAATCAATGCTTGTCTTATTTAAGGGATGAATTTT
104563 GATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCCAAAAAAAAT-AGTCAATATCATTTA
130 GATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATG-CAAAAAAAATCA-TCAATATCATTTA
*
104627 TCCTAATAAGGAGAATGTGTTTATAGTACCTAATC-CTAAAATGAATGAAGATCATTACTAGAAT
193 TCCTAATAAGGAGAATGTGTTTATAGTGCCTAATCAC-AAAATGAATGAAGATCATTACTAGAAT
* * * *
104691 CTATGTTTGTCTCATTTGAGGCACGAACTTCGACTTTAC-AAAATTGTTGGGAGAAAAGCCTTTC
257 CCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGA-AAAAGCCTTTC
* * ** * *
104755 TTGCAAAACCAAAGCATTAATTTTGTCTATCCTAATGAGAAGACTATGTTTATGG-GGCTGAACT
321 TTGCGAAACCAAAGCATTAATATCATGTATCCTAATGAGAAGACTATGTTTATGGTGCCT-AA-T
* * *
104819 CTGAAAAGAATAGGGATTAGTATGGCTCTTCATGTTTATCTTATTCAAGAGACAAACTTTGATTC
384 CTGAAAAGAATAGGGATTAGTATGG-TATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTC
*
104884 TATCAAAAACGGTGCAAAGAAAATG-
448 TATCAAAAATGGTG-AAAGAAAA-GC
* *
104909 TTTTCTTGCGACACCAAAGCATCAATGTCATATATCCTAATGAAAGGAATGTGTTCTTGGTTCCC
1 TTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAAGGAATGTGTTTTTGGTTCCC
** * *
104974 AATCTT-ATAAAGAATGGAGACTGTTACGAGAATTGATGCTTGTCATATCTAAGGGATGAA-TTT
66 AATCTTGA-AAAGAATGGAGACTGTTACGAGAATCAATGCTTGTCTTATTTAAGGGATGAATTTT
* *
105037 GATTTGAAGGAGAATAGGGCAAAGAAAAGATTTCCATGCAAAACAAAATCATCAATATCATTTA-
130 GATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAA-AAAATCATCAATATCATTTAT
* * *
105101 CTCTAATGAA-GAGAAAGTGTTTATAGTGCCTATTCACAAAATGAATGAAGATCATTAGTAGAAT
194 C-CTAAT-AAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAAT
* ** * * * *
105165 CCATGTTTATCTCATTTGAGGCACAAAGTTAGGCTTTACAAAAATTAGTGGGAAGAAAGCTTTTC
257 CCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAA-AAAGCCTTTC
* * * * * * *
105230 TTGTGAAACGAAAGCGTTAATACCATGTATCTTTATGAGAAGACTATGTTTATGGAGCCTAATCC
321 TTGCGAAACCAAAGCATTAATATCATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAAT-C
* * * * * *
105295 TAAAAAAAATGGGGATTAGTGTGAGTATTCATGTTTTTCTTATTTAAGAGACAAATTTTGATTCT
385 TGAAAAGAATAGGGATTAGTATG-GTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCT
* *
105360 ATCAAAAAGGGTGGAAAGAAAACC
449 ATCAAAAATGGT-GAAAGAAAAGC
*
105384 TTTTCTTGC-AGCACCAAAGCATCAATGTCATGTATCCTAATGAAATGAATGTGTTTTTGGTT-C
1 TTTTCTTGCGA-CACCAAAGCATCAATGTCATGTATCCTAATGAAAGGAATGTGTTTTTGGTTCC
* * * *
105447 CAATCTTGAAAA-AATGAAGACTGTTGCGGGAATCAATGCTTGTCATATTT-AGGTGATGAATTT
65 CAATCTTGAAAAGAATGGAGACTGTTACGAGAATCAATGCTTGTCTTATTTAAGG-GATGAATTT
* * *
105510 TGATTTTAAGGAAAATGGGGCAAAGAAAAGATTTTCATGCAAAAGAAAAGCATCAATATCATTTA
129 TGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAA-AAAATCATCAATATCATTTA
* *
105575 CCCTAATGAGGAGAATGTGTTTATAGTGTCC-AATCACAAAATGAATGAAGATCATTACTAGAAT
193 TCCTAATAAGGAGAATGTGTTTATAGTG-CCTAATCACAAAATGAATGAAGATCATTACTAGAAT
* * *
105639 CCATGTTTGTCTCATTTGAGGTATGAACTTAGACTTTTCAAAAATTGGTGGGAAAAAAAGCCGTT
257 CCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGG--AAAAAGCCTTT
* * * * * * * *
105704 CTTGCAAAACCAAAGCATCAATATCATATTTTCAAATGAGAAGACAATGTTTATAGTGCCTAATC
320 CTTGCGAAACCAAAGCATTAATATCATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATC
* * * * *
105769 TTGAAAAGAA-AGGGGATTACTATGAGTATTCATGTTTGTATTATTTAACAGGCAAACTTTCATT
385 -TGAAAAGAATA-GGGATTAGTATG-GTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATT
105833 CTATCAAAAATGGTTGAAAGAAAAGC
447 CTATCAAAAATGG-TGAAAGAAAAGC
* * * * *
105859 TTTTCATGTGACACCAAAGCATCAATGTCATATAACCTAATG-AAGAGAATGCGTTTTTGGTTCC
1 TTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAAG-GAATGTGTTTTTGGTTCC
* * * * * * *
105923 CAATCTTGAAAATAGTGCAGACTGTCATGACG-ATCAATGCTTGCCTTATTTAAGGGATGAACTT
65 CAATCTTGAAAAGAATGGAGACTGTTACGA-GAATCAATGCTTGTCTTATTTAAGGGATGAATTT
* *
105987 TGATTTTAACGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATAATCAATATCATTTA
129 TGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAA-AAAATCATCAATATCATTTA
** * *
106052 TCCTAATAAATAGAATGTGTTTATAGTGCCTAATCCCAAAATGAATGAAGATCTTTACTAGAATC
193 TCCTAATAAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATC
* * * * *
106117 CACGTTTGTCTCATTCGAGACATGAACTTAGACTTAACAAAAATTGGTGGGAAAAAGCTTTTCTT
258 CATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAAGCCTTTCTT
* * * ** * * *
106182 GCAAAACCAAAGCATCAATATCGTGTATTGTAATGAGAAGACTATGTTTATGATGCCTATTCCTA
323 GCGAAACCAAAGCATTAATATCATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAAT-CTG
* * * * * * *
106247 AAAAGAATGGGGATTGGTATGACTATTCATGTTTGTCTTATTTGAGAGATAAACATTAATTCTAT
387 AAAAGAATAGGGATTAGTATG-GTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTAT
* **
106312 TAAAAACAGTGAAAAGAAAAGC
451 CAAAAATGGTG-AAAGAAAAGC
* * * *
106334 TTTTCTTGTGACACCAAAGCATCAATGTTATGTATCCTAATTAAAAGAATGTGTTTTTGGTTCCC
1 TTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAAGGAATGTGTTTTTGGTTCCC
* * * * * ** * * *
106399 AGTCTTGAAAAGAGTGGAGACAGTTATGAGAATTAATGCTTAACTTATTTGAGAGATGAACTTTG
66 AATCTTGAAAAGAATGGAGACTGTTACGAGAATCAATGCTTGTCTTATTTAAGGGATGAATTTTG
* * * *
106464 ATTTTAAGGAAAATAGGGTAAAGAAAAGATTTTCACGCAAAGAAAAATCATGAATATCATTTATC
131 ATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAA-AAAAATCATCAATATCATTTATC
* * * * *
106529 CTAATGAGGAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACAAGGATCGA
195 CTAATAAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCA
* * ** * * * * * *
106594 TGTTTTTCTCATTTGAAGCACAAACCTAGACTTGATAAAAATTGGTGGGAAAAAACGTTTCTTGT
260 TGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAAGCCTTTCTTGC
* * * * *
106659 GAAACCAAAGCATCAATATCATGTATCCTAATAAGAAGACTATATTTATGGTACCTAACCATGAA
325 GAAACCAAAGCATTAATATCATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATC-TGAA
* * * *
106724 AAGAGTGGGGATTAGTATGGGTATTTACGTTTGTCTTATTTAAGAGACAAACTTTGATTCTAT-A
389 AAGAATAGGGATTAGTAT-GGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCA
*
106788 AATAATGGTGGAAATAAAAGC
453 AA-AATGGT-GAAAGAAAAGC
* * * ** * * *
106809 TTTTCTTGCAACACCAAAGCTTTAACCTCATGTATCCCAATGAAGGGAAAGTGTTTTTGGTTCCC
1 TTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAAGGAATGTGTTTTTGGTTCCC
* ** * * *
106874 AATCTTGAAAAGAATTGAGGTTGTTACGAGAATCGATGCTTGTCTTATTCAAGTGATGAATTTTG
66 AATCTTGAAAAGAATGGAGACTGTTACGAGAATCAATGCTTGTCTTATTTAAGGGATGAATTTTG
* * * * *
106939 ATTTTAAGGAAAATTA-GTCAAAAAAAAGATTTCCATACAAAAGAAAATCATCAATATCGTTTAC
131 ATTTTAAGGAAAA-TAGGGCAAAGAAAAGATTTCCATGCAAAA-AAAATCATCAATATCATTTAT
* * * *
107003 CCTAATGAGGAGCATGTGTTTGTAGTGCCTAATCACAAAATGAATGAAGATCCTTACTAGAATCC
194 CCTAATAAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCC
* * * * *
107068 ATATTTATCTCATTCGAGGCATGAACTTAGACTTTACAAAAATAGGTGAGAAAAGAGCCTTTCTT
259 ATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAA-AGCCTTTCTT
* * * * * ** ** *
107133 ACGAAACCAAAGCATCATTATCATTTATCCAAATGAGAAGACTATGTTTATAATGCCTTACCCTA
323 GCGAAACCAAAGCATTAATATCATGTATCCTAATGAGAAGACTATGTTTATGGTGCC-TAATCTG
* * * *
107198 AAAAGAATAGGGA-TATTATGCCTATTCATGTTTGTCTTATTTAAGAGATAAACTTTGGTTCTAT
387 AAAAGAATAGGGATTAGTATG-GTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTAT
* *
107262 CAAAAACGGTACAAAGAAAA-C
451 CAAAAATGGT-GAAAGAAAAGC
* * * * * * * * *
107283 ATTTTATTACGATACTAAAGCATCAATGTCATGTATCCTAAAGAAAAGATTGTGTTCTCGGTTCC
1 -TTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAAGGAATGTGTTTTTGGTTCC
** * *** * * *
107348 CAATCTTTTAAAGAATGGAGATTGTTACGAGAATTGGTGCGTGTCATATTTAAGAGATGAATTTT
65 CAATCTTGAAAAGAATGGAGACTGTTACGAGAATCAATGCTTGTCTTATTTAAGGGATGAATTTT
* * * *
107413 GGTTTTAAGGAAAATTGGGCAAAGAAAAAATTTTCATGCAAAAAAAATCATCAATATCATTTATC
130 GATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAAAAATCATCAATATCATTTATC
* * * ** *
107478 CTATTGAGGGGAATGTGTTTATAGTGTCC-AA-CTGTAAAATTAATGAAGATCATTACTAGAATC
195 CTAATAAGGAGAATGTGTTTATAGTG-CCTAATC-ACAAAATGAATGAAGATCATTACTAGAATC
* * * * **
107541 CTTGTTTGTCTCATTTGAGGTATGAACTTAGAATTTTCAAAAATTGGTGTAAAAAATGTCCTTT-
258 CATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAA-G-CCTTTC
* * * *
107605 TTGTGAAACCAAAGCATCAATATCATGAATTCTAATGAGAAGACTATGTTTATGGTGCCTAATCT
321 TTGCGAAACCAAAGCATTAATATCATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATC-
* * * * * *
107670 TGAAAAAAATGGGGATTAGTATGAGTTTTCATATTTGCCTTATTTAAGAGACAAAC-TTCATTTC
385 TGAAAAGAATAGGGATTAGTATG-GTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGA-TTC
*
107734 TATCAAAAACGGTGGAAAGAAAAGC
448 TATCAAAAATGGT-GAAAGAAAAGC
* * * * * * * **
107759 TTTTCTTACAACACGAAAGCATCAATGACATGCATCCTAATGAACGGAATGTGCTTTTCATTCCC
1 TTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAAGGAATGTGTTTTTGGTTCCC
* * * * * *
107824 AATCTTGAAAATAGTGGAAACTATTATGAGAATCGATGCTTGTCTTATTTAAGGGATGAATTTTG
66 AATCTTGAAAAGAATGGAGACTGTTACGAGAATCAATGCTTGTCTTATTTAAGGGATGAATTTTG
* * * * * * *
107889 AATTAAAGGAAAATAGGGTAAAGAAAAGATTTTCATACAAAAGAAAATCATCAATATCTTTTACC
131 ATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAA-AAAATCATCAATATCATTTATC
* * *
107954 CTAATAAGGAGAATGTTTTTATAGTGTCTAATCACAAAATGAATGAAGATCCTTACTAGAATCCA
195 CTAATAAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCA
* * * * **
108019 TGTTTGTCTCGTTTAAGGCATAAACTTAAACTTTTGAAAAA-----GGGAAATAAGCCTTTCTTG
260 TGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAA-AAGCCTTTCTTG
* * * * *
108079 GGAAGCCAAAGCATTAATATCCTGTATTCTAATGAGAAAACTATGTTTATGGTGCCTAATCCTGA
324 CGAAACCAAAGCATTAATATCATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAAT-CTGA
* * * * * *
108144 AAAGAATGGGGATTAATATGAGTATTCATGTTTATCTTATTTAAGGGACAAATTTTGATTTTATC
388 AAAGAATAGGGATTAGTATG-GTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATC
* *
108209 AAAAACGATTGAAAGAAAAGC
452 AAAAATG-GTGAAAGAAAAGC
* * * * *
108230 TTTTCTTACGACACCAAACCATCAATGTCATGCATCCT-ATTAAAGGGAAAGTGTTTTTGGTTCC
1 TTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAA-GGAATGTGTTTTTGGTTCC
* * * * * *
108294 CGATATTAAAAAGAATGGAGA-TAGTTATGAGAATCAATGCTTG-CTT-TTTAAGGGATAAACTT
65 CAATCTTGAAAAGAATGGAGACT-GTTACGAGAATCAATGCTTGTCTTATTTAAGGGATGAATTT
* * *
108356 TGATTTTTAGGAAAATAGGGCAAAGAAAAATATTTCCATGCGAAAGAAAATCATCAATATCATTT
129 TGATTTTAAGGAAAATAGGGCAAAG-AAAAGATTTCCATGC-AAAAAAAATCATCAATATCATTT
* * * *
108421 ATCTTATTAAGGAGAATGTGTTTATAGTG-CTTATC-CTAAAATGAATGAAAATCATTACTAGAA
192 ATCCTAATAAGGAGAATGTGTTTATAGTGCCTAATCAC-AAAATGAATGAAGATCATTACTAGAA
* *
108484 TCCATGTTTGTCTCATTTGA-GTACGAACTTAGACTTTAC-AAAATTGGTGGGAAGAAAGCCTTT
256 TCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAA-AAAGCCTTT
* * * ** * *** * *
108547 CTTGCGAAGCCAACGCATTAATTTTGTCTATCCTAATGAGAAGACTATAACTATAGTGCCGAATC
320 CTTGCGAAACCAAAGCATTAATATCATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAAT-
* * *
108612 CTGAAAAGAAT-GGGTATTAGCATGAGTATTCATATTTGTATTATTTAAGAGACAAACTTTGATT
384 CTGAAAAGAATAGGG-ATTAGTATG-GTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATT
*
108676 CTATCAAAAATGGTTGAAAGACAAGC
447 CTATCAAAAATGG-TGAAAGAAAAGC
* * * * * * * *
108702 TTTTCTTGTGGCGCCAATGCTTCAATGTCATATATCCTAATGAAGGGAATGTGATTTTGGTTCCC
1 TTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAAGGAATGTGTTTTTGGTTCCC
* * * * * * *
108767 AATCTTGAAAAGAATGGAGACTGTCACGAGAATTAATACTTGCCTTTTTTAAGGGATGCACTTTG
66 AATCTTGAAAAGAATGGAGACTGTTACGAGAATCAATGCTTGTCTTATTTAAGGGATGAATTTTG
* * * *
108832 ATTTTAAGGAAAATAGGGTAAAGAAAAGATTTCTATGCAAAAGAAAATAATCAATATTATTTATC
131 ATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAA-AAAATCATCAATATCATTTATC
108897 CTAATAAGGAGAATGTGTTTATAGTGCCTAATC-CTAAAATGAATGAAGATCATTACTAGAATCC
195 CTAATAAGGAGAATGTGTTTATAGTGCCTAATCAC-AAAATGAATGAAGATCATTACTAGAATCC
* *
108961 ATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTAC-AAAATTGGTGGGAGGAAAG-C-TTCTT
259 ATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGA-AAAAGCCTTTCTT
* * * * * ** * *
109023 ACAAAACCAAAGCATTAATTTCGTCTATCCTAATGAGTGGACTATGTTTATGGTGCCAAACTATG
323 GCGAAACCAAAGCATTAATATCATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAA-TCTG
* * *
109088 -AAAGAATAGGGATTAGTATGGCTCTTCATGTTTATCTTATTCAAGAGACAAACTTTGATTCTAT
387 AAAAGAATAGGGATTAGTATGG-TATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTAT
* **
109152 CAAAAATGGTGCAAGGAAAATA
451 CAAAAATGGTG-AAAGAAAAGC
* ** * *
109174 TTTTCATATGACACCAAAGCATCAATGTCATATATCCTAATGAAAGGAATGTGTTATTGGTTCCC
1 TTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAAGGAATGTGTTTTTGGTTCCC
*
109239 AATCTT-ATAAAGAATGGAGACTGTTACGAGATTCAATGCTTGT
66 AATCTTGA-AAAGAATGGAGACTGTTACGAGAATCAATGCTTGT
109282 GATATTTGTT
Statistics
Matches: 5267, Mismatches: 861, Indels: 292
0.82 0.13 0.05
Matches are distributed among these distances:
467 4 0.00
468 14 0.00
469 82 0.02
470 68 0.01
471 232 0.04
472 461 0.09
473 216 0.04
474 1177 0.22
475 1990 0.38
476 798 0.15
477 221 0.04
478 4 0.00
ACGTcount: A:0.36, C:0.14, G:0.18, T:0.32
Consensus pattern (471 bp):
TTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAAGGAATGTGTTTTTGGTTCCC
AATCTTGAAAAGAATGGAGACTGTTACGAGAATCAATGCTTGTCTTATTTAAGGGATGAATTTTG
ATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAAAAATCATCAATATCATTTATCC
TAATAAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCAT
GTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAAGCCTTTCTTGCG
AAACCAAAGCATTAATATCATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCTGAAAA
GAATAGGGATTAGTATGGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAA
ATGGTGAAAGAAAAGC
Found at i:109690 original size:13 final size:13
Alignment explanation
Indices: 109672--109698 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
109662 CTGCCACTAT
109672 TTGTATCGATACA
1 TTGTATCGATACA
109685 TTGTATCGATACA
1 TTGTATCGATACA
109698 T
1 T
109699 AGTAAAAGGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.30, C:0.15, G:0.15, T:0.41
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:110139 original size:23 final size:23
Alignment explanation
Indices: 110104--110147 Score: 54
Period size: 23 Copynumber: 1.9 Consensus size: 23
110094 GCATTCAACC
*
110104 TTAAGTTACAATTTCTT-AAGAAT
1 TTAAGGTACAA-TTCTTGAAGAAT
*
110127 TTAAGGTATAATTCTTGAAGA
1 TTAAGGTACAATTCTTGAAGA
110148 GATTGAGAGG
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
22 5 0.28
23 13 0.72
ACGTcount: A:0.39, C:0.07, G:0.14, T:0.41
Consensus pattern (23 bp):
TTAAGGTACAATTCTTGAAGAAT
Found at i:111319 original size:15 final size:15
Alignment explanation
Indices: 111299--111327 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
111289 AGATAATAAA
111299 GATAATGATGATGAT
1 GATAATGATGATGAT
111314 GATAATGATGATGA
1 GATAATGATGATGA
111328 AGAAGTTGAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.41, C:0.00, G:0.28, T:0.31
Consensus pattern (15 bp):
GATAATGATGATGAT
Found at i:117290 original size:16 final size:17
Alignment explanation
Indices: 117258--117291 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
117248 GGTAATGCTC
*
117258 AAAGGAGAATCGAGCAA
1 AAAGGACAATCGAGCAA
117275 AAAGGACAAT-GAGCAA
1 AAAGGACAATCGAGCAA
117291 A
1 A
117292 TTATATGCTA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 7 0.44
17 9 0.56
ACGTcount: A:0.56, C:0.12, G:0.26, T:0.06
Consensus pattern (17 bp):
AAAGGACAATCGAGCAA
Found at i:121598 original size:21 final size:21
Alignment explanation
Indices: 121538--121591 Score: 76
Period size: 21 Copynumber: 2.7 Consensus size: 21
121528 CACGCCCAGA
**
121538 TGTATCGATACATGTTC--AT
1 TGTATCGATACATGGACAAAT
121557 TGTATCGATACATGGACAAAT
1 TGTATCGATACATGGACAAAT
121578 TGTATCGATACATG
1 TGTATCGATACATG
121592 AGGAAATGTA
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
19 15 0.48
21 16 0.52
ACGTcount: A:0.31, C:0.15, G:0.19, T:0.35
Consensus pattern (21 bp):
TGTATCGATACATGGACAAAT
Found at i:125619 original size:21 final size:21
Alignment explanation
Indices: 125569--125612 Score: 79
Period size: 21 Copynumber: 2.1 Consensus size: 21
125559 TTAAATATAA
*
125569 ATGTTTTTCAAGCATCAAATC
1 ATGTTTTTCAAACATCAAATC
125590 ATGTTTTTCAAACATCAAATC
1 ATGTTTTTCAAACATCAAATC
125611 AT
1 AT
125613 TTATTTCCAA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.36, C:0.18, G:0.07, T:0.39
Consensus pattern (21 bp):
ATGTTTTTCAAACATCAAATC
Found at i:125767 original size:13 final size:13
Alignment explanation
Indices: 125749--125775 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
125739 ACATATTGTT
125749 TTGTATTGATACA
1 TTGTATTGATACA
125762 TTGTATTGATACA
1 TTGTATTGATACA
125775 T
1 T
125776 GCTCATTGTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.30, C:0.07, G:0.15, T:0.48
Consensus pattern (13 bp):
TTGTATTGATACA
Found at i:126803 original size:41 final size:41
Alignment explanation
Indices: 126741--126822 Score: 128
Period size: 41 Copynumber: 2.0 Consensus size: 41
126731 CACAAAATGA
* * *
126741 ATGAAGATCATTACTAAAATCCATGTTTTTCTCATTTGAGG
1 ATGAAGACCATTACTAAAATCCATGCTTATCTCATTTGAGG
*
126782 ATGAAGACCATTACTAGAATCCATGCTTATCTCATTTGAGG
1 ATGAAGACCATTACTAAAATCCATGCTTATCTCATTTGAGG
126823 CATAAACACA
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
41 37 1.00
ACGTcount: A:0.32, C:0.17, G:0.16, T:0.35
Consensus pattern (41 bp):
ATGAAGACCATTACTAAAATCCATGCTTATCTCATTTGAGG
Found at i:127755 original size:159 final size:158
Alignment explanation
Indices: 127101--131558 Score: 523
Period size: 159 Copynumber: 28.2 Consensus size: 158
127091 GTGGAGACTG
* * * *
127101 TTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAA-TTTTAGTTTTAAGGAAATTA-GGTTAA
1 TTACGAGAATCCATGTTTGTCTTATTTAAGGGATGAACTTTGA-TTTTAAGGAAAATATGG--AA
* * * * * * * * *
127164 AGAAAAGATTTCCATGCAAAAGAAAATCATTAATATCTTTTATCCTAAAGAGGATATTGTGTTTA
63 AGAAAAGATTTTCATGCAAAAGAAAAGCATCAATATCATGTATCTTAATGAGGAGAATGTGTTTA
127229 TAGTGCCTAATCACAAAATGAATGAAGATCA
128 TAGTGCCTAATCACAAAATGAATGAAGATCA
* * * * * * * * * *
127260 TTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACATAGACTTTGCAA--AAATTGGTGGGA
1 TTACGAGAATCCATGTTTGTCTTATTTAAGGGATGAACTTTGA-TTT-TAAGGAAAAT-ATGGAA
* * ** ** * * * * *
127323 AG-AAAGCTTTT-TTGTGAAACCAAAGCATCAATATCGTGTATCCTTAA-GAGAAGACTATGTTA
63 AGAAAAGATTTTCATGCAAAAGAAAAGCATCAATATCATGTAT-CTTAATGAGGAGAATGTGTTT
* * *
127385 AGAGTGCCTAATC-CTAAAAAT-AATGGAGATTA
127 ATAGTGCCTAATCAC--AAAATGAATGAAGATCA
* * ** * * ** * *** *
127417 GTAAGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGATGGAAAG
1 TTACGAGAATCCATGTTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAA-TATGGAAAG
* * * * * * * * *
127482 AAAAGCTTTTCTTCCGACA-CAAAGCATCAATGA-CATGCATCTTGATGAAGG-GAATGTGTTTT
65 AAAAGATTTTCATGCAAAAGAAAAGCATCAAT-ATCATGTATCTTAATG-AGGAGAATGTGTTTA
* * * ** * * *
127544 TGGTTCCCAATCTTGAAAA-GAGTGAAG-GCTG
128 TAGTGCCTAATC-ACAAAATGAATGAAGATC-A
* * * *
127575 TTACGAGAATCGACGCTTGTCTTATTTAAGGGATGAATTTTGATTTTAAGGAAAATATGGCAAAG
1 TTACGAGAATCCATGTTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATATGG-AAAG
* * * * *
127640 AAAAGATTTTCATGCAAAAGAAAATCATCAATACCATTTATCTTAATGAGGAGAATGTATTTATT
65 AAAAGATTTTCATGCAAAAGAAAAGCATCAATATCATGTATCTTAATGAGGAGAATGTGTTTATA
127705 GTGCCTAATCACAAAATGAATGAAGATCA
130 GTGCCTAATCACAAAATGAATGAAGATCA
* * * * * *
127734 TTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACA--AAAATTAGTGTG-
1 TTACGAGAATCCATGTTTGTCTTATTTAAGGGATGAACTTTGATTTTA-AGGAAAA-TA-TG-GA
* ** ** * * * ** * *
127796 AA-AAAAG-TCTTTCTTGTGAAACCAATGCATCAACATCATGTATCCTAATGAAAAGACTATGTT
62 AAGAAAAGAT-TTTCATGCAAAAGAAAAGCATCAATATCATGTATCTTAATGAGGAGAATGTGTT
* * ** * *
127859 TGTGGTGCCTAATCTTGAAAA-GAAT-AGGGATTA
126 TATAGTGCCTAATC-ACAAAATGAATGA-AGATCA
* * ** *** * *** * *
127892 GTATGAGTTTGTTTGTTTGTCTTATTTAA---ATGGCAAGCTTTGATTCTATCAAAAATGGTGGC
1 TTACGAGAATCCATGTTTGTCTTATTTAAGGGAT-G-AA-CTTTGATTTTAAGGAAAAT-ATGGA
* ** * * * * *
127954 AAGAAAAGCTTTTTTTGCGACAA-AAAAGCATTAATGTC-TAATATCCTAATGAAGG-GAATGTG
62 AAGAAAAGATTTTCATGC-AAAAGAAAAGCATCAATATCAT-GTATCTTAATG-AGGAGAATGTG
* * * ** * * **
128016 TTTGTGGTTCGC-AATCTTGAAAA-AAATGGAGATTG
124 TTTATAGTGC-CTAATC-ACAAAATGAATGAAGATCA
* * * ***** * * *
128051 TTAAGGGAATCAATGCCCCCCATAATTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGTAAA-
1 TTACGAGAATCCATGTTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATATGG-AAAG
* * * * ** *
128115 AAGAAGA-TTTCATTGCAAAAGAAAATCATGAAAATCATTTATCCGAATGAGGAAAATGTGTTTA
65 AA-AAGATTTTCA-TGCAAAAGAAAAGCATCAATATCATGTATCTTAATGAGGAGAATGTGTTTA
*
128179 TAGTACCTAATCACAAAATGAATGAAGATCA
128 TAGTGCCTAATCACAAAATGAATGAAGATCA
* * * * * ** * * ** * * *
128210 TTACTAGAATCCATGTATGTGTCATTTGAGGCTTGAACATAGACTTCGCAA--AAATTGGTGGGA
1 TTACGAGAATCCATGTTTGTCTTATTTAAGGGATGAACTTTGA-TT-TTAAGGAAAAT-ATGGAA
* ** ** * * * * * * *
128273 AG-AAAG-CTTT-ATTGTGAAACCAAAGCTTGAATTATCGTGTATCCTT-ATGAGAAGACTATAT
63 AGAAAAGATTTTCA-TGCAAAAGAAAAGCATCAA-TATCATGTAT-CTTAATGAGGAGAATGTGT
* ** *
128334 TTATGGTGCCTAATCTTGAAAA-GAATG--GA-GA
125 TTATAGTGCCTAATC-ACAAAATGAATGAAGATCA
* * * ** * * *** *
128365 TT---AGTAT-CATGTTTATCTTATTTAAGAGAAAAACTTTCATTCTATCAAAAACGATGGAAAG
1 TTACGAGAATCCATGTTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAA-TATGGAAAG
* * **** * *
128426 AAAAGCTTTTC-TTCTGACTTTAAAA-CATCAATGTCATGTTTCTTAATGAAGG-GAATGTGTTT
65 AAAAGATTTTCATGC--AAAAGAAAAGCATCAATATCATGTATCTTAATG-AGGAGAATGTGTTT
* * * * ** *
128488 TTGGTTCCCAATCTTGAAAATAAATGAA-A-CTA
127 ATAGTGCCTAATC-ACAAAATGAATGAAGATC-A
* * * * * * * *
128520 TTA-TAGGAATCAATGCTCT-CCTTACTTAAGGAATGACCTTTGATTTTAAGGAAAATAGGGCAA
1 TTACGA-GAATCCATG-TTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATATGG-AA
* * * **
128583 AGAAAAGATTTCCAT-CTAAAAGAAAATCATTAATATCAAT-TATCCGAATGAGGAGAATGTGTT
63 AGAAAAGATTTTCATGC-AAAAGAAAAGCATCAATATC-ATGTATCTTAATGAGGAGAATGTGTT
* *
128646 TGTAGTGCCTAATCACAAAATGAATGAAAATCA
126 TATAGTGCCTAATCACAAAATGAATGAAGATCA
* * * * * * * * * * *
128679 TTACTAGAATCCATGCTTGTCTCATTTGAGGCATGAACATAGACTTCACA--AAAGTTAGTGGGA
1 TTACGAGAATCCATGTTTGTCTTATTTAAGGGATGAACTTTGATTTTA-AGGAAA-ATA-TGGAA
* ** ** * * * *
128742 AG-AAAGCTTTGT--TGTGAAACCAAAGCATCAATATCGTGTATCCCT-ATGAGCA-AACTATGT
63 AGAAAAGATTT-TCATGCAAAAGAAAAGCATCAATATCATGTAT-CTTAATGAGGAGAA-TGTGT
* **
128802 TTATGGTGCCTAATC-CTGAAAAT-AATG--G-GGA
125 TTATAGTGCCTAATCAC--AAAATGAATGAAGATCA
* * * * *
128833 TT---AGTAT-CTTGTTTGTCTTATTT-A-GGATACAAACTTTGATTCTATAA-AAAAAGATGGA
1 TTACGAGAATCCATGTTTGTCTTATTTAAGGGAT--GAACTTTGATT-T-TAAGGAAAATATGGA
* * * * ** * *
128891 AAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGA-AATGTGTT
62 AAGAAAAGATTTTCATGCAAAAGAAAAGCATCAATATCATGTATCTTAATG-AGGAGAATGTGTT
* * * * ** **
128955 TTTGGTTCCCAATCTTGAAAA-GAATGGTGA-CTA
126 TATAGTGCCTAATC-ACAAAATGAATGAAGATC-A
* * * * * * *
128988 TTACGAGACTCGATGCTTGTCTTATTTAAAGGATGAATTTTGGTTTTAAGGAAATTA-GGTTAAA
1 TTACGAGAATCCATGTTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATATGG--AAA
* * * * * * *
129052 GAAAAGATTTTCATACAAAA-AAAACCATTC-ATATCATTTATCGTAATGTGGAGATTGTGTTTG
64 GAAAAGATTTTCATGCAAAAGAAAAGCA-TCAATATCATGTATCTTAATGAGGAGAATGTGTTTA
****
129115 TAGTGCCTAATCACAAAATGAATGTTCTTCA
128 TAGTGCCTAATCACAAAATGAATGAAGATCA
* * ** * * ** * * *
129146 TTACTAGAATCCATGTTTGTCTCAGGTGAGGCACAAACCTAGACTTTT--GAAAAAT-TGGTGAA
1 TTACGAGAATCCATGTTTGTCTTATTTAAGGGATGAACTTTGA-TTTTAAGGAAAATAT-G-GAA
* * * * * * * * * *
129208 A-AAAAAACTTTTCTTGTGAAAA-CAAATCGTAAATATCATGTATTCTT-ATGAGAAGACTATGT
63 AGAAAAGA-TTTTCATG-CAAAAGAAAAGCATCAATATCATGTA-TCTTAATGAGGAGAATGTGT
* * * * *
129270 TTATGGTTCCTAAT-ATTGAAAA-GAATCAAGATTA
125 TTATAGTGCCTAATCA--CAAAATGAATGAAGATCA
* * * * * * * * * **
129304 CTAAGACAATTCATTTTTCTCTTATTTAAGAGATAAACTTTGATTCT-ATCAAAATCGATGGAAA
1 TTACGAGAATCCATGTTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAAT--ATGGAAA
* * ** * ** * *
129368 GAAAAGCTTTTCTTGTGACACCAAAGCATCAATGA-CATGCATCCTAATGAAGG-GAATGTGTTT
64 GAAAAGATTTTCATGCAAAAGAAAAGCATCAAT-ATCATGTATCTTAATG-AGGAGAATGTGTTT
* * * *** * *
129431 TTGGTTCCTAATCTTGAAATGAGTGGAGA-CTA
127 ATAGTGCCTAATCACAAAATGAATGAAGATC-A
* * * * * * * *
129463 TTATGAGAATCGATGCTTCTCATATTTAAGTGATGAATTTTGATTTTAAGGAAAATAGGGCAAAG
1 TTACGAGAATCCATGTTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATATGG-AAAG
* * * * * * * * * *
129528 AAAAGATTTCCATGTAAAAAAAAATCATGAATATCATTTACCCTAATAAGGAGAATGTGTTTATT
65 AAAAGATTTTCATGCAAAAGAAAAGCATCAATATCATGTATCTTAATGAGGAGAATGTGTTTATA
* * *
129593 GTGCCTAATCACAAAATGAATTAAGTTCC
130 GTGCCTAATCACAAAATGAATGAAGATCA
* * * * * ** *
129622 TTACTAGAATCCATGTTTAT-TTCTTTTGAGGCATGAACTCAGACTTTTCA--AAAAT-TGGTCA
1 TTACGAGAATCCATGTTTGTCTT-ATTTAAGGGATGAACTTTGA-TTTTAAGGAAAATATGG--A
** * * * ** * * * * *
129683 GAA-AAAAGCCTTCCTTGCGAAACCAAAGCATCAATATTATATAT-TCTAATGAGAAGACTATGT
62 -AAGAAAAGATTTTCATGCAAAAGAAAAGCATCAATATCATGTATCT-TAATGAGGAGAATGTGT
* * * * *
129746 TTATGGTACCTAATC-CTAAAAAGAAT-AGGGATTA
125 TTATAGTGCCTAATCAC-AAAATGAATGA-AGATCA
* * * * * ** * *** ** *
129780 GTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTTGAAAG
1 TTACGAGAATCCATGTTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAA-TATGGAAAG
* * * * * ** * * * * ** * * *
129845 AAAATATTTTCTTACGACACCAAACCATCAATGTTACGTATCTTAGAAAAAGATACTGT-TTT-T
65 AAAAGATTTTCATGCAAAAGAAAAGCATCAATATCATGTATCTTA-ATGAGGAGAATGTGTTTAT
* * * * *
129908 CGTTCTCGATATTA-AAAA-GAATGGAGA-CA
129 AGTGC-CTA-ATCACAAAATGAATGAAGATCA
* ** * * * * *
129937 GTTATGAGAATCTGTGCTTGTTTTATTTAGGGGATGAACTTTAATTTTAAGGAAAATAGGGCAAA
1 -TTACGAGAATCCATGTTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATATGG-AAA
* * * * * * * *
130002 GAAAAAGATTTACATTG--AAAGAAAATCATCAATATTATTTATCCTATTAAGGAGAATGTGGTT
64 G-AAAAGATTTTCA-TGCAAAAGAAAAGCATCAATATCATGTATCTTAATGAGGAGAATGTGTTT
*
130065 ATAGTGCCTAATCACAAAGTGAAT-ACAGATCA
127 ATAGTGCCTAATCACAAAATGAATGA-AGATCA
* * * * * * * * * * *
130097 TTACTAGAATCCATGATTGTCTCATTTGAGGCATGAACATAGACTTT--GCAAAATTGGTGGGAA
1 TTACGAGAATCCATGTTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAA-T-ATGGAAA
** * ** *** * * * * * *
130160 G-AAAGCCTTTCTTGTGAAACTGAAGCATCATTTTCGTCTATCCTAATG-GGAAGAATATGTTTA
64 GAAAAGATTTTCATGCAAAAGAAAAGCATCAATATCATGTATCTTAATGAGG-AGAATGTGTTTA
* * * *
130223 TGGTGCC-AGATC-CTGAAAA-AAAT-AGGGATTA
128 TAGTGCCTA-ATCAC--AAAATGAATGA-AGATCA
* * * * * * * ** * * *
130254 GTATGAGTATTCATGTTCGTATTATTTAAGAGACAAACTTTGATTCTATTA-G-AAATGGTTGAA
1 TTACGAGAATCCATGTTTGTCTTATTTAAGGGATGAACTTTGATT-T-TAAGGAAAAT-ATGGAA
* ** * *** * * * * * *
130317 AGAAAAGCTTTTC-TCGTGACACCCAAGCATTAATGTCTTATATCCTAACGAAGG-GAATGTGTT
63 AGAAAAGATTTTCAT-GCAAAAGAAAAGCATCAATATCATGTATCTTAATG-AGGAGAATGTGTT
* * * *** * *
130380 TTTGGT-TCTCAATCTTGAAATGAATGGAG-GC-
126 TATAGTGCCT-AATCACAAAATGAATGAAGATCA
* * * * *
130411 TGTCACGAGAAT-TATCGCTTGCCTTATTGAAGGGATGAACTTTGATTTTAAGGAAAATAAGGCA
1 T-T-ACGAGAATCCAT-GTTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATATGG-A
* * * ** * * * * *
130475 AAGAAAAAGA-TTTCTATACGAAAGAAAATCATCAATATTGTTTATCCTATTGAGAAGAGTGTGT
62 AAG-AAAAGATTTTC-ATGCAAAAGAAAAGCATCAATATCATGTATCTTAATGAGGAGAATGTGT
*
130539 TTATAGTGCCTAATCACAAAATGAATGAAGATCT
125 TTATAGTGCCTAATCACAAAATGAATGAAGATCA
* * * * * * ** *
130573 TTACTAGAATCCATG-TTGCCTCATTTGAGGCATGAACTTAGACTTTCCA--AAAAT-TGGTGCG
1 TTACGAGAATCCATGTTTGTCTTATTTAAGGGATGAACTTTGA-TTTTAAGGAAAATAT-G-G-A
** * * ** * * * * * *
130634 AA-AAAAGCCTTTCTTGCGAAACCAAAGCGTCAATATCATGTATCCTAATGAGAAGACTATGTCT
62 AAGAAAAGATTTTCATGCAAAAGAAAAGCATCAATATCATGTATCTTAATGAGGAGAATGTGTTT
* * * ** *
130698 ATGGTTCCTAATCCACATAA-GAATGGGGATTA
127 ATAGTGCCTAAT-CACAAAATGAATGAAGATCA
* * * * * ** * ** **
130730 GTATGACTAAT-AATGTTTATCTTATTTAAAAGACT-AACTTTGATTCTATCGAAAATGATATAA
1 TTACGA-GAATCCATGTTTGTCTTATTTAAGGGA-TGAACTTTGATTTTAAGGAAAAT-ATGGAA
* * ** * ** * ** * * * * *
130793 AGAAAAGCTTTTCTTGTTACACCAAACCATCAACGTCATGTATCCTACTAAAGAGAATGTGTTTT
63 AGAAAAGATTTTCATGCAAAAGAAAAGCATCAATATCATGTATCTTAATGAGGAGAATGTGTTTA
* * * * * * *
130858 TGGTTCCCAATCTTCAAAA-GAAGGGAGA-CTG
128 TAGTGCCTAATC-ACAAAATGAATGAAGATC-A
* * ** * * * * * *
130889 TTAGGACAATTAATGCTTATCTCT-TTTATGAGATGAATTTTGATTTTAAGGAAAATAGGGCAAA
1 TTACGAGAATCCATGTTTGTCT-TATTTAAGGGATGAACTTTGATTTTAAGGAAAATATGG-AAA
* * * **
130953 GAAAAGATTTCCATGCAAAA-AAAGATG-ATCAATATCATTTATCCTAATGAGGTA-AATGTGCA
64 GAAAAGATTTTCATGCAAAAGAAA-A-GCATCAATATCATGTATCTTAATGAGG-AGAATGTGTT
* *
131015 TATAGTGCCCAATTACAAAATGAATGAAGATCA
126 TATAGTGCCTAATCACAAAATGAATGAAGATCA
* * * * * ** * * * *
131048 TTACTAGAATCTATGTTTGTCTCATTTGAGGCATGAACTAAGAGTTTACA-AAAAATTGGTGGGA
1 TTACGAGAATCCATGTTTGTCTTATTTAAGGGATGAACTTTGATTTTA-AGGAAAA-T-ATGGAA
** * * ** * * * * *
131112 A-AAAAGCCTTTCTTGCGAAACCAAAGCTTCAATTTCATGTATCTTAATGAGAAGACTATGTTTA
63 AGAAAAGATTTTCATGCAAAAGAAAAGCATCAATATCATGTATCTTAATGAGGAGAATGTGTTTA
* ** *
131176 TGGTGCCTAATC-CTGAAAA-GAATGGGGAT-T
128 TAGTGCCTAATCAC--AAAATGAATGAAGATCA
* ** * * * *
131206 TGTATGACTATTCATGTTTGTCTTATTTAAGAGACTG-ACTTTGAGTCTATCAA-AAACAATAT-
1 T-TACGAGAATCCATGTTTGTCTTATTTAAGGGA-TGAACTTTGA-T-T-TTAAGGAA-AATATG
* * * * * * * *
131268 -AAAGAAAAGCTTTTCTTATG--ACACAAAAGCATCAATGTAATATATCCTAATAAAGG-GAATG
60 GAAAGAAAAGATTTTC--ATGCAAAAGAAAAGCATCAATATCATGTATCTTAAT-GAGGAGAATG
* * * ** * **
131329 TGTTT-TAGGTTCCCAACCTGAAAAT-AATGGAGATTG
122 TGTTTATA-GTGCCTAATCACAAAATGAATGAAGATCA
* * * * * *
131365 TTATGAGAATCAATGCTTGTCTTATTTAAGGGATGAATTTTGATTTTAAAGAAAATAAGGCAAAG
1 TTACGAGAATCCATGTTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATATGG-AAAG
* * * * * * * * *
131430 AAAAGATTTTCGTGCAAAGGAAAA-C--CAGTACCATTTATCCTAATGACGATAATTTGTTTATA
65 AAAAGATTTTCATGCAAAAGAAAAGCATCAATATCATGTATCTTAATGAGGAGAATGTGTTTATA
131492 GTGCCTAATCACAAAATGAATGAAGATCA
130 GTGCCTAATCACAAAATGAATGAAGATCA
** ** * * *
131521 TTACTTGAATCTGTGTTTGTCTCATTTGAGGTATGAAC
1 TTACGAGAATCCATGTTTGTCTTATTTAAGGGATGAAC
131559 GTAGACTTTA
Statistics
Matches: 2985, Mismatches: 1033, Indels: 565
0.65 0.23 0.12
Matches are distributed among these distances:
148 3 0.00
149 2 0.00
150 29 0.01
151 49 0.02
152 99 0.03
153 18 0.01
154 10 0.00
155 55 0.02
156 69 0.02
157 372 0.12
158 836 0.28
159 1251 0.42
160 150 0.05
161 35 0.01
162 7 0.00
ACGTcount: A:0.36, C:0.13, G:0.18, T:0.32
Consensus pattern (158 bp):
TTACGAGAATCCATGTTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATATGGAAAGA
AAAGATTTTCATGCAAAAGAAAAGCATCAATATCATGTATCTTAATGAGGAGAATGTGTTTATAG
TGCCTAATCACAAAATGAATGAAGATCA
Found at i:128166 original size:476 final size:475
Alignment explanation
Indices: 126782--138702 Score: 6834
Period size: 476 Copynumber: 24.9 Consensus size: 475
126772 TCATTTGAGG
* * * * * *
126782 ATGAAGACCATTACTAGAATCCATGCTTATCTCATTTGAGGCATAAACACAGACTTCACAAAAAT
1 ATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACATAGACTTTACAAAAAT
* * * *
126847 TGGTGGGAAAAAAG-CTTTGTTGTGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGGCT
66 TGGTGGGAAGAAAGCCTTTCTTGTGAAACCAAAGCATCAATATCATGTATCCTTATGAGAAGACT
* * * *
126911 ATATTTATGGTGCCTAATCCAGAAAGGAAT-GGG----G-ATTAGTA-TCATGTTTGTCTTATTT
131 ATGTTTATGGTGCCTAATCCTGAAAAGAATAGGGATTAGTATGAGTATTCATGTTTGTCTTATTT
* * **
126969 AAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAACTTTTCTTGCGACACCAAAGTG
196 AAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCA
* * ** * * *
127034 TCACTGTCATGTATCCTAATAAAGATAATATGTTTTTGGTTCCCAATCTTGAAAATAGTGGAGAC
261 TCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGAC
* * * * **
127099 TGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAA-TTTTAGTTTTAAGGAAATTAGGTTA
326 TGTTAAGAGAATCAATGCTTGTCTTATTTAAGGGATGAACTTTGA-TTTTAAGGAAAATAGGGCA
* * * * *
127163 AAGAAAAGATTTCCATGCAAAAGAAAATCATTAATATCTTTTATCCTAAAGAGGATATTGTGTTT
390 AAGAAAAGATTT-CATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTT
127228 ATAGTGCCTAATCACAAAATGA
454 ATAGTGCCTAATCACAAAATGA
*
127250 ATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACATAGACTTTGCAAAAAT
1 ATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACATAGACTTTACAAAAAT
* * *
127315 TGGTGGGAAGAAAG-CTTTTTTGTGAAACCAAAGCATCAATATCGTGTATCCTTAAGAGAAGACT
66 TGGTGGGAAGAAAGCCTTTCTTGTGAAACCAAAGCATCAATATCATGTATCCTTATGAGAAGACT
* * * * *
127379 ATG-TTAAGAGTGCCTAATCCTAAAAATAAT-GGAGATTAGTAAGACTATTCATGTTTGTCTTAT
131 ATGTTTATG-GTGCCTAATCCTGAAAAGAATAGG-GATTAGTATGAGTATTCATGTTTGTCTTAT
* *
127442 TTAAGAGACAAACTTTGATTCTATCAAAAACGATGGAAAGAAAAGCTTTTCTTCCGACA-CAAAG
194 TTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAG
* * * * * *
127506 CATCAATGACATGCATCTTGATGAAGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAGTGAAG
259 CATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAG
* * * * * *
127571 GCTGTTACGAGAATCGACGCTTGTCTTATTTAAGGGATGAATTTTGATTTTAAGGAAAATATGGC
324 ACTGTTAAGAGAATCAATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGC
* * *
127636 AAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATACCATTTATCTTAATGAGGAGAATGTATT
389 AAAGAAAAGA-TTTCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTT
*
127701 TATTGTGCCTAATCACAAAATGA
453 TATAGTGCCTAATCACAAAATGA
*
127724 ATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAAT
1 ATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACATAGACTTTACAAAAAT
* * * * * * * *
127789 TAGTGTGAAAAAAGTCTTTCTTGTGAAACCAATGCATCAACATCATGTATCCTAATGAAAAGACT
66 TGGTGGGAAGAAAGCCTTTCTTGTGAAACCAAAGCATCAATATCATGTATCCTTATGAGAAGACT
* * **
127854 ATGTTTGTGGTGCCTAATCTTGAAAAGAATAGGGATTAGTATGAGT-TTGTTTGTTTGTCTTATT
131 ATGTTTATGGTGCCTAATCCTGAAAAGAATAGGGATTAGTATGAGTATT-CATGTTTGTCTTATT
* * * * * **
127918 TAA-ATGGCAAGCTTTGATTCTATCAAAAATGGTGGCAAGAAAAGCTTTTTTTGCGACAAAAAAG
195 TAAGA-GACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAG
* * * * *
127982 CATTAATGTC-TAATATCCTAATGAAGGGAATGTGTTTGTGGTTCGCAATCTTGAAAAAAATGGA
259 CATCAATGTCAT-GTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGA
* * **** * *
128046 GATTGTTAAGGGAATCAATGCCCCCCATAATTAAGGGATGAACTTTGATTTTAAGGAAAATAGGG
323 GACTGTTAAGAGAATCAATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGG
* * * * *
128111 TAAA-AAGAAGATTTCATTGCAAAAGAAAATCATGAAAATCATTTATCCGAATGAGGAAAATGTG
388 CAAAGAA-AAGATTTCA-TGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTG
*
128175 TTTATAGTACCTAATCACAAAATGA
451 TTTATAGTGCCTAATCACAAAATGA
* * * **
128200 ATGAAGATCATTACTAGAATCCATGTATGTGTCATTTGAGGCTTGAACATAGACTTCGCAAAAAT
1 ATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACATAGACTTTACAAAAAT
* * * *
128265 TGGTGGGAAGAAAG-CTTTATTGTGAAACCAAAGCTTGAATTATCGTGTATCCTTATGAGAAGAC
66 TGGTGGGAAGAAAGCCTTTCTTGTGAAACCAAAGCATCAA-TATCATGTATCCTTATGAGAAGAC
* * * *
128329 TATATTTATGGTGCCTAATCTTGAAAAGAAT--GG---AG-ATTAGTA-TCATGTTTATCTTATT
130 TATGTTTATGGTGCCTAATCCTGAAAAGAATAGGGATTAGTATGAGTATTCATGTTTGTCTTATT
* * * *** *
128387 TAAGAGAAAAACTTTCATTCTATCAAAAACGATGGAAAGAAAAGCTTTTCTT-CTGACTTTAAAA
195 TAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGC-GACACCAAAG
* * *
128451 CATCAATGTCATGTTTCTTAATGAAGGGAATGTGTTTTTGGTTCCCAATCTTGAAAATAAAT-GA
259 CATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCTTGAAAA-GAATGGA
* * * * * *
128515 AACTATTATAG-GAATCAATGCTCT-CCTTACTTAAGGAATGACCTTTGATTTTAAGGAAAATAG
323 GACTGTTA-AGAGAATCAATGCT-TGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAG
* * *
128578 GGCAAAGAAAAGATTTCCAT-CTAAAAGAAAATCATTAATATCAATTATCCGAATGAGGAGAATG
386 GGCAAAGAAAAGATTT-CATGC-AAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATG
*
128642 TGTTTGTAGTGCCTAATCACAAAATGA
449 TGTTTATAGTGCCTAATCACAAAATGA
* * * *
128669 ATGAAAATCATTACTAGAATCCATGCTTGTCTCATTTGAGGCATGAACATAGACTTCACAAAAGT
1 ATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACATAGACTTTACAAAAAT
* * * *
128734 TAGTGGGAAGAAAG-CTTTGTTGTGAAACCAAAGCATCAATATCGTGTATCCCTATGAGCAA-AC
66 TGGTGGGAAGAAAGCCTTTCTTGTGAAACCAAAGCATCAATATCATGTATCCTTATGAG-AAGAC
* * *
128797 TATGTTTATGGTGCCTAATCCTGAAAATAAT-GGG----G-ATTAGTA-TCTTGTTTGTCTTATT
130 TATGTTTATGGTGCCTAATCCTGAAAAGAATAGGGATTAGTATGAGTATTCATGTTTGTCTTATT
* * * * *
128855 TAGGATACAAACTTTGATTCTATAAAAAAAGATGGAAAGAAAAGCTTTTCTTGCGACACCAAAGC
195 TAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGC
* *
128920 ATCAATGTCATGTATCCTAATGAAGGAAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGTGA
260 ATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGA
* * * * * * * * **
128985 CTATTACGAGACTCGATGCTTGTCTTATTTAAAGGATGAATTTTGGTTTTAAGGAAATTAGGTTA
325 CTGTTAAGAGAATCAATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCA
* * * * *
129050 AAGAAAAGATTTTCATACAAAA-AAAACCATTC-ATATCATTTATCGTAATGTGGAGATTGTGTT
390 AAGAAAAGA-TTTCATGCAAAAGAAAATCA-TCAATATCATTTATCCTAATGAGGAGAATGTGTT
*
129113 TGTAGTGCCTAATCACAAAATGA
453 TATAGTGCCTAATCACAAAATGA
**** ** ** * **
129136 ATGTTCTTCATTACTAGAATCCATGTTTGTCTCAGGTGAGGCACAAACCTAGACTTTTGAAAAAT
1 ATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACATAGACTTTACAAAAAT
** * * * * * * * *
129201 TGGTGAAAAAAAAACTTTTCTTGTGAAAACAAATCGTAAATATCATGTATTCTTATGAGAAGACT
66 TGGTGGGAAGAAAGCCTTTCTTGTGAAACCAAAGCATCAATATCATGTATCCTTATGAGAAGACT
* ** * * * ** * *
129266 ATGTTTATGGTTCCTAATATTGAAAAGAATCA-AGATTACTAAGACAATTCATTTTTCTCTTATT
131 ATGTTTATGGTGCCTAATCCTGAAAAGAAT-AGGGATTAGTATGAGTATTCATGTTTGTCTTATT
* * * *
129330 TAAGAGATAAACTTTGATTCTATCAAAATCGATGGAAAGAAAAGCTTTTCTTGTGACACCAAAGC
195 TAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGC
* * * * *
129395 ATCAATGACATGCATCCTAATGAAGGGAATGTGTTTTTGGTTCCTAATCTTGAAATGAGTGGAGA
260 ATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGA
* * * * * * *
129460 CTATTATGAGAATCGATGCTTCTCATATTTAAGTGATGAATTTTGATTTTAAGGAAAATAGGGCA
325 CTGTTAAGAGAATCAATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCA
* * * * *
129525 AAGAAAAGATTTCCATGTAAAAAAAAATCATGAATATCATTTACCCTAATAAGGAGAATGTGTTT
390 AAGAAAAGATTT-CATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTT
*
129590 ATTGTGCCTAATCACAAAATGA
454 ATAGTGCCTAATCACAAAATGA
* * * * * * *
129612 ATTAAGTTCCTTACTAGAATCCATGTTTATTTCTTTTGAGGCATGAAC-TCAGACTTTTCAAAAA
1 ATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACAT-AGACTTTACAAAAA
** * * * * * * *
129676 TTGGTCAGAAAAAAGCCTTCCTTGCGAAACCAAAGCATCAATATTATATATTCTAATGAGAAGAC
65 TTGGTGGGAAGAAAGCCTTTCTTGTGAAACCAAAGCATCAATATCATGTATCCTTATGAGAAGAC
* *
129741 TATGTTTATGGTACCTAATCCTAAAAAGAATAGGGATTAGTATGAGTATTCATGTTTGTCTTATT
130 TATGTTTATGGTGCCTAATCCTGAAAAGAATAGGGATTAGTATGAGTATTCATGTTTGTCTTATT
* ** * *
129806 TAAGAGACAAACTTTGATTCTATCAAAAACGGTTGAAAGAAAATATTTTCTTACGACACCAAACC
195 TAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGC
* * * ** * * * * * *
129871 ATCAATGTTACGTAT-CTTA-GAA-AAAGATACTGTTTTTCGTTCTCGATATTAAAAAGAATGGA
260 ATCAATGTCATGTATCCTAATGAAGGGA-AT-GTGTTTTTGGTTCCCAATCTTGAAAAGAATGGA
* * ** * * *
129933 GACAGTTATGAGAATCTGTGCTTGTTTTATTTAGGGGATGAACTTTAATTTTAAGGAAAATAGGG
323 GACTGTTAAGAGAATCAATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGG
* * *
129998 CAAAGAAAAAGATTTACATTG--AAAGAAAATCATCAATATTATTTATCCTATTAAGGAGAATGT
388 CAAAG-AAAAGATTT-CA-TGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGT
* *
130061 GGTTATAGTGCCTAATCACAAAGTGA
450 GTTTATAGTGCCTAATCACAAAATGA
* *
130087 AT-ACAGATCATTACTAGAATCCATGATTGTCTCATTTGAGGCATGAACATAGACTTTGC-AAAA
1 ATGA-AGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACATAGACTTTACAAAAA
** * * * * * * *
130150 TTGGTGGGAAGAAAGCCTTTCTTGTGAAACTGAAGCATCATTTTCGTCTATCCTAATGGGAAGAA
65 TTGGTGGGAAGAAAGCCTTTCTTGTGAAACCAAAGCATCAATATCATGTATCCTTATGAGAAGAC
* * *
130215 TATGTTTATGGTGCC-AGATCCTGAAAAAAATAGGGATTAGTATGAGTATTCATGTTCGTATTAT
130 TATGTTTATGGTGCCTA-ATCCTGAAAAGAATAGGGATTAGTATGAGTATTCATGTTTGTCTTAT
* * * * * * *
130279 TTAAGAGACAAACTTTGATTCTATTAGAAATGGTTGAAAGAAAAGCTTTTCTCGTGACACCCAAG
194 TTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAG
* * * * * *
130344 CATTAATGTCTTATATCCTAACGAAGGGAATGTGTTTTTGGTTCTCAATCTTGAAATGAATGGAG
259 CATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAG
* * * * * * *
130409 GCTGTCACGAGAAT-TATCGCTTGCCTTATTGAAGGGATGAACTTTGATTTTAAGGAAAATAAGG
324 ACTGTTAAGAGAATCAAT-GCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGG
* * ** * * *
130473 CAAAGAAAAAGATTTCTATACGAAAGAAAATCATCAATATTGTTTATCCTATTGAGAAGAGTGTG
388 CAAAG-AAAAGATTTC-ATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTG
130538 TTTATAGTGCCTAATCACAAAATGA
451 TTTATAGTGCCTAATCACAAAATGA
* * * *
130563 ATGAAGATCTTTACTAGAATCCATG-TTGCCTCATTTGAGGCATGAACTTAGACTTTCCAAAAAT
1 ATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACATAGACTTTACAAAAAT
* * * * *
130627 TGGTGCGAAAAAAGCCTTTCTTGCGAAACCAAAGCGTCAATATCATGTATCCTAATGAGAAGACT
66 TGGTGGGAAGAAAGCCTTTCTTGTGAAACCAAAGCATCAATATCATGTATCCTTATGAGAAGACT
* * ** * * * * * *
130692 ATGTCTATGGTTCCTAATCCACATAAGAATGGGGATTAGTATGACTAATAATGTTTATCTTATTT
131 ATGTTTATGGTGCCTAATCCTGAAAAGAATAGGGATTAGTATGAGTATTCATGTTTGTCTTATTT
* * * * * ** ** *
130757 AAAAGACTAACTTTGATTCTATCGAAAATGATATAAAGAAAAGCTTTTCTTGTTACACCAAACCA
196 AAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCA
* * * * * *
130822 TCAACGTCATGTATCCTACTAAAGAGAATGTGTTTTTGGTTCCCAATCTTCAAAAGAAGGGAGAC
261 TCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGAC
* * * * * * *
130887 TGTTAGGACAATTAATGCTTATCTCT-TTTATGAGATGAATTTTGATTTTAAGGAAAATAGGGCA
326 TGTTAAGAGAATCAATGCTTGTCT-TATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCA
* *
130951 AAGAAAAGATTTCCATGCAAAA-AAAGATGATCAATATCATTTATCCTAATGAGGTA-AATGTGC
390 AAGAAAAGATTT-CATGCAAAAGAAA-ATCATCAATATCATTTATCCTAATGAGG-AGAATGTGT
* * *
131014 ATATAGTGCCCAATTACAAAATGA
452 TTATAGTGCCTAATCACAAAATGA
* *
131038 ATGAAGATCATTACTAGAATCTATGTTTGTCTCATTTGAGGCATGAAC-TAAGAGTTTACAAAAA
1 ATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACAT-AGACTTTAC-AAAA
* * * *
131102 ATTGGTGGGAAAAAAGCCTTTCTTGCGAAACCAAAGCTTCAATTTCATGTAT-CTTAATGAGAAG
64 ATTGGTGGGAAGAAAGCCTTTCTTGTGAAACCAAAGCATCAATATCATGTATCCTT-ATGAGAAG
* * *
131166 ACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTTGTATGACTATTCATGTTTGTCTTA
128 ACTATGTTTATGGTGCCTAATCCTGAAAAGAATAGGGATTAGTATGAGTATTCATGTTTGTCTTA
** * ** ** ** *
131231 TTTAAGAGACTGACTTTGAGTCTATCAAAAACAATATAAAGAAAAGCTTTTCTTATGACACAAAA
193 TTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAA
* * * * * *
131296 GCATCAATGTAATATATCCTAATAAAGGGAATGTGTTTTAGGTTCCCAA-CCTGAAAATAATGGA
258 GCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGA
* * * * *
131360 GATTGTTATGAGAATCAATGCTTGTCTTATTTAAGGGATGAATTTTGATTTTAAAGAAAATAAGG
323 GACTGTTAAGAGAATCAATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGG
* * * * * * *
131425 CAAAGAAAAGATTTTCGTGCAAAGGAAAA-C--CAGTACCATTTATCCTAATGACGATAATTTGT
388 CAAAGAAAAGA-TTTCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGT
131487 TTATAGTGCCTAATCACAAAATGA
452 TTATAGTGCCTAATCACAAAATGA
* ** * *
131511 ATGAAGATCATTACTTGAATCTGTGTTTGTCTCATTTGAGGTATGAACGTAGACTTTACAAAAAT
1 ATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACATAGACTTTACAAAAAT
* * * * *
131576 TAGTAGGAAGAAAGCCTTTCTT-TCAAAACCAAAGCATCAATATCGTGTATCCTTATGAAAAGAC
66 TGGTGGGAAGAAAGCCTTTCTTGT-GAAACCAAAGCATCAATATCATGTATCCTTATGAGAAGAC
* * * * *
131640 TAAGTTTATGGTGCCTAATCCTGAAAAGAAT-GGAGACTAGTATGAGTGTTCATGTGTATCTT-T
130 TATGTTTATGGTGCCTAATCCTGAAAAGAATAGG-GATTAGTATGAGTATTCATGTTTGTCTTAT
* * * * *
131703 TCTAGGAGACAAACTTTAATTCTATCAAAAACGGTTGAAAAAAAAGCTTTTCTTGTGACACCAAA
194 T-TAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAA
* ** * * * * **
131768 GCATAAATGTCAACTATCCTAATAAAGAGAATGTG-TTTTGGTTCCCAATCTTTAAAAGGATAAA
258 GCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGA
* * * * *
131832 TACTGTTACA-AGAGTCAACGCTTGCCATATTTAAGGG-TGGAACTTTGATTTTAAGGAAAATAG
323 GACTGTTA-AGAGAATCAATGCTTGTCTTATTTAAGGGAT-GAACTTTGATTTTAAGGAAAATAG
* * * * * *
131895 GGCAAAAAAAAAAGATTTTCATGCAAAAAAAAAACGGTCAATATCATTTATCCCAATGAGTAGAA
386 GGC--AAAGAAAAGA-TTTCATGCAAAAGAAAATC-ATCAATATCATTTATCCTAATGAGGAGAA
* * *
131960 TATGTTTGTAGTGCCCAATCACAAAATGA
447 TGTGTTTATAGTGCCTAATCACAAAATGA
* * ** * *
131989 ATGAAGATCATTTCTAGAATCCATGATCATCTTATTAGAGGC-T-----TAGACTTTAC-AAAAT
1 ATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACATAGACTTTACAAAAAT
*** * * * ** * * * *
132047 TGAG-GGGTCCAAAGCCCTTCTTGCGAAACGAAAGTGTCAGTACCGA-GTATCCTTATAAAAAGA
66 TG-GTGGGAAGAAAGCCTTTCTTGTGAAACCAAAGCATCAATATC-ATGTATCCTTATGAGAAGA
* * * * * *
132110 CAAAGTTTATGGTGCCTAATCTTTAAAAGAATAGGGATTAGTGTGAGTATTCATGTTTATCTTAT
129 CTATGTTTATGGTGCCTAATCCTGAAAAGAATAGGGATTAGTATGAGTATTCATGTTTGTCTTAT
* * * ** *
132175 TTAAAAGACAAACTTTGATTCTGTCAAAAACAGTTTAAAGAAAAGCTTTTCTTGTGACACCAAAG
194 TTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAG
* * * *
132240 CATCAATGTCATGTATCCTAATGAAGGGAATGTATTTTTGGTTCCTAATCTTGGAAAGAAAGG-G
259 CATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAG
* * ** * *
132304 ACTGTTACA-AGAGTCAATTCTTACCATATTT-AGCAGATGAACTTTGATTTTAAGGAAAATAGG
324 ACTGTTA-AGAGAATCAATGCTTGTCTTATTTAAG-GGATGAACTTTGATTTTAAGGAAAATAGG
* * *
132367 GCAAAGAAATGATTTTCATGCAAAAGAAAACCATCAATATTATTTATCCTAATGAGGAGAATGTG
387 GCAAAGAAAAGA-TTTCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTG
*
132432 TTTATAGTGCTTAATCACAAAATGA
451 TTTATAGTGCCTAATCACAAAATGA
* * * * * *
132457 ATGAAAATCATTACTAGAATACATGTTTATCTCATTTAAGAG-ATGAACTTACACTTTACAAAAA
1 ATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAG-GCATGAACATAGACTTTACAAAAA
* *** * * ** * * ** *
132521 TTGGTGGCAAGAAAGCCTTTCTCACGAAGCTAAAATAGCAATATTATGTATTTTTATGAGAAAAC
65 TTGGTGGGAAGAAAGCCTTTCTTGTGAAACCAAAGCATCAATATCATGTATCCTTATGAGAAGAC
* * *
132586 TATGTTTTTGGTGCCTAATCCTGAAAAGAATAGGGATTAGTAT-AGCTATTCATGCTTGTTTTAT
130 TATGTTTATGGTGCCTAATCCTGAAAAGAATAGGGATTAGTATGAG-TATTCATGTTTGTCTTAT
** * * * *
132650 TTAAGAGGGAAACTTTGATTCTAGCAAAAATGGTGGAAAGAAAAGCTATTCTTGCGATACCAAAG
194 TTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAG
* * *
132715 CATCAATGTCATGTATCATAATGAAGGGAAGGTGCTTTTGGTTCCCAATCTTGAAAAAGAATGGA
259 CATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCTTG-AAAAGAATGGA
* * * ** * * *
132780 GACTATTACGAGAACCAATGCTTACCTTATTTAAGGAATGAATTTTGATTTTAAGGAAAGTAGGG
323 GACTGTTAAGAGAATCAATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGG
* * * *
132845 CAAAGAAAAGATTTTGATGTAAAAGAAAATCGTCAATATCATTCATCCTAATGAGGAGAATGTGT
388 CAAAGAAAAGA-TTTCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGT
* *
132910 TTATAGTGCCTAATCA-TAAATTA
452 TTATAGTGCCTAATCACAAAATGA
* ***
132933 ACTGAAGATCATTACTAGAATCCATGTTTGTCACATTTGAGGCGCAAACATAGACTTTACAAAAA
1 A-TGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACATAGACTTTACAAAAA
* * * * *
132998 TTAGTGGGAAGAAAG-C---C-TATGAAACCAAAGCGTCATTATCATGTATCCTTATGAGAA-AG
65 TTGGTGGGAAGAAAGCCTTTCTTGTGAAACCAAAGCATCAATATCATGTATCCTTATGAGAAGAC
* * *
133057 TCAAGTTTATGGTGCCTAATCCTAAAAACAATAGGGATTAGTATGAGTATTCATGTTTGTCTTAT
130 T-ATGTTTATGGTGCCTAATCCTGAAAAGAATAGGGATTAGTATGAGTATTCATGTTTGTCTTAT
* * * * *
133122 TTAAGAGACAAGCTTTGATTCTATCAAGAACGGTTGAAAGAAAAGCTTTTTTTACGACACCAAAG
194 TTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAG
* ** ** ** * *** ****
133187 CATCAATGTAATGTAT-CT--TGTAAGCTTAA-G-GATTAAAT-G-AACTAA-GAGGGGGTGAAT
259 CATCAATGTCATGTATCCTAATG-AAG-GGAATGTG-TT-TTTGGTTCCCAATCTTGAAAAGAAT
* * ** * * * * ** ** ** * ***
133244 TG-G-CTCTTATCAAAATTTGAAGGTTTTGAAAGAATTGA-TTAA-AAAACAAC-TCGAAGATAA
320 GGAGACTGTTAAGAGAA--TCAATG-CTT----GTCTT-ATTTAAGGGATGAACTTTGATTTTAA
* **** ** * **** * ***
133304 --AAAGATTAGGGAAAAGAGAAAG-CCAGACCCAAATACTAATAGGGGTTCGATAT-AAACA-CG
377 GGAAA-A-TAGGGCAAAGA-AAAGATTTCATGCAAA-A-GAA-A-ATCATCAATATCATTTATC-
* ***** * * * * * ** ** *
133364 ACTCAT-ACGTCCTCTCTCTTTGACACTTCCTTGTCGAGTATAT-A
434 -CTAATGA-GGAGAATGTGTTT-ATAGTGCCTAATC-ACAAAATGA
* * ** * * * * * *
133408 CCA-CAA-TTCGCTGCTCGAAT---TGTTT-AC-C-TTTCAGGCA--AAGGTATA-ACCTTACAA
1 --ATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAA--CATAGACTTTACAA
* ** * * ** * * * * ****
133462 CACTTATCTTTTCAAGGCTAAGATAAGAACCATTC-AAT--ATCTTC-AAGAAT-TATACCCCAA
62 -A--AAT-TGGT---GG-GAAGA-AAG--CCTTTCTTGTGAAAC--CAAAGCATCAATATCATGT
* * * * * * **** * * * *
133522 ATTCTTAAGAAAAAGTTACCAAGGTTGAATACAACCTTATAAACACAAAGAAATTTTACAAACAA
114 ATCCTTATG-AGAAG--A-CTATGTT-TATGGTGCC---TAATC-C--TGAAA----A-GAA-TA
*** ** * * * *** ** *
133587 CAAATTCCTCTAAGTATGCTAGTGTTTGTGAAAAAATAAGCACAAAAGAATACAAATAAGCTTTC
162 GGGATTAGTATGAGTATTC-A-TGTTTGT-CTTATTTAAG------AG---AC--A-AA-CTTTG
**** * ** * * * * ** * * *
133652 AAAGAAT-AACAACAAT-GAATATAAAAGCTCTTTGAATTGTAGAAAATGATAAAACTTTGAATG
211 ATTCTATCAAAAACGGTGGAA-AGAAAAGCT-TTT--CTTG-CG-ACA--CCAAAGC-ATCAATG
* * * * ** *** * *
133715 -CTTGACTTTCTTGATTTTCTTGTTGGTTCTTGTTGTTCTTTAGCTGTTGGAAACTCATATTTAT
267 TCATG--TATCCT-A-----ATGAAGG-GAATG-TGTT-TTT-G--GTT-----CCCA-ATCT-T
*** * * ** ** * * * * ** **
133779 AGGCTAGAATGTTGACATACTCTTTGGAGGTTGAATGATTGTGTT-TGT-A-GCCTTTA--TTGA
311 -GAAAAGAATG--G--AGACTGTTAAGAGAATCAATGCTTGTCTTATTTAAGGGATGAACTTTGA
* ** * ** ** * * * * * ** * *
133839 CTTGTT-TGG-AGCTTGTTTCCGTATAATCACG-CTCCTATG-TATCGATACATGCATTTAA-AT
371 -TT-TTAAGGAAAATAG--GGCAAAGAA--AAGATTTC-ATGCAAAAGA-AAAT-CA-TCAATAT
*** * ** * * * *
133899 --TTTATAGCC--ATCGAGCTTAATGTATCGATA---CAT-TTCACCATGTACT-A
426 CATTTAT--CCTAAT-GAGGAGAATGTGTTTATAGTGCCTAATCA-CA--AAATGA
* * * * * ** * * *
133946 ATACAATGTATCGATACACT-GTATCGAT-ATTGAGTAAGTTT-A-G-AT--AC-TACCAGTTT-
1 AT-GAA-G-ATC-AT-TACTAGAATCCATGTTTGTCTCA-TTTGAGGCATGAACATA-GACTTTA
*** * * * ** * * * * * **
134002 CATGTATCGAT----ACAATTCATTGTGTAT-TGATACC-AAG-AACATGTATCGATTGTATAAA
59 CAAAAATTGGTGGGAAGAAAGCCTT-TCT-TGTGAAACCAAAGCATCA-ATATC-A-TGTAT-CC
*** ** * ** * * * ** *
134060 TT-TG-GTTAATTTTACTCATTATCGATTGTATAAAT-TTCAACATATGCAGTTTTGGA-AAGCT
118 TTATGAG--AAGACTA-TGTTTAT-G-GTGCCT-AATCCTGAA-A-A-G-A-ATAGGGATTAG-T
* * * * ** * * * * *
134121 TTTATGAACTTACCAAT-TATT-T-TAAGTTTGTGTG-CAATCATTCT-CTTCGTATTAATAA-G
171 ATGA-GTA-TT--C-ATGT-TTGTCTTA-TTTAAGAGACAAAC-TT-TGATTC-TATCAAAAACG
* ** * *** * * * * * * *
134180 ATTCATA-ACCTG-TATTCTGATATCCACAACTTAAGAAACACGTTAGAAAAGTTCATTTGATAT
226 GTGGAAAGAAAAGCTTTTCT--T-GCGAC-AC--CA-AAGCA---T--CAATG-TCA--TG-TAT
* * * * ** * * * ** *
134243 TC-AATAAAGTCTCGAA-ATG---TTCATT-CCAAT-TTTATAACCCGTAA--CATTTCTTTTAT
275 CCTAATGAAG---GGAATGTGTTTTTGGTTCCCAATCTTGA-AA--AG-AATGGA-GACTGTTA-
* *** * ** * ** * ***
134299 AAACTTCTCCATTTTTGTTTTCATTTAA---AACAAATTT--TTTTAA-G-----AGGTTTAAG-
331 AGA-GAATCAATGCTTGTCTT-ATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGA
** * * * * * ** * ** ** * *
134352 GCA-ATTT--TTCAATATATAACTCCTCTTTAATAAAATTTTTCTCCCCCAT-AATAAAATAT-T
394 AAAGATTTCATGCAAAAGA-AAATCATC---AATATCA--TTTAT-CCTAATGAGGAGAATGTGT
* * * * ** *
134412 TAAAACT-CTTTCTTAACAAAAT-A
452 TTATAGTGC-CTAATCACAAAATGA
* ****** * * * * * * * * *** * *
134435 TCTCTCCCCCTTTAATTACAATTCCCCCCTTTTTATTATCCTTTTTGTTACAAGAATCA-ATGCC
1 -ATGAAGATCATT-ACTAGAA-T---CCATGTTT-GTCT-C-ATTTGAGGCATGAA-CATA-GAC
* * ** * *
134499 TGCCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATG-AA
55 T---TTA--CAA---A--AA--TTG---GT---G-------GG--AAG-AAAGCCTTTCTTGTGA
* * * * * *
134563 AACGAAAGCATCAATATCATTTATCCTAATGAG--GAATTTGTCTT-TAGAGTACCTAATCAC--
92 AACCAAAGCATCAATATCATGTATCCTTATGAGAAGACTATGT-TTAT-G-GTGCCTAATC-CTG
* * * * * * *
134623 AAAATGAATGAAGGCCATTACTA-GA--ATACATATTTGTCTCATTTGAG-GCACGAACTTAT-A
153 AAAA-GAAT--AGG-GATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAG-ACAAACTT-TGA
* * ** * *
134683 CTT-TA-CAAAAATTCGG-GG-AAG-AAAGCTTTTCTTGCAAAACCAAAGCGGCAATATCGTGTA
212 -TTCTATCAAAAA--CGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTA
* * * * * * * * * * **
134743 TCTTTATG-AGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGAGATTAG-TATAGCTA
274 TCCTAATGAAG-GGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGACT-GTTA-AGAGA
* * ** ** * * ** * *
134806 TTC-ATGTTTGTCTTATTTAAAAGACAAACTTCGATTCT-ATCAAAA-ACGGTGGAAAGAAAAGC
336 ATCAATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATA-GG-GCAAAGAAAAGA
* * ** * * * * * *
134868 TGTTCTTGCAACACCAAAGCATCAATCTCATGTATCCTAATGAAGG-GAATGTGTTTTTGGTTCC
399 T-TTCATGCAAAAGAAAATCATCAATATCATTTATCCTAATG-AGGAGAATGTGTTTATAGTGCC
* ** *
134932 CAATCTTAAAAAGA
462 TAATCACAAAATGA
* * * * * ** * * * ** ** * **
134946 AT-AGAGA-CTGTTACGAGAATCAAAGCTTCCCTTATTTAAGGGATGAATTTTCATTTTTAGGAA
1 ATGA-AGATC-ATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACATAGA-CTTTACAAA
* ** ** * * * *
135009 AATAGGT-CAAAGAAAAG--TTT-TTGATGCAAAAGAAAATCATCAATATCATTTATCCTAATAA
63 AATTGGTGGGAAG-AAAGCCTTTCTTG-TG--AAACCAAAGCATCAATATCATGTATCCTTATGA
* * * * * ** ** * * * ** *
135070 GGAGAATGTATTTGTAATGCCTAATCAC--AAAATGAATAAAGATCAATACT-AGAAACCATGCT
124 GAAGACTATGTTTATGGTGCCTAATC-CTGAAAA-GAATAGGGATTAGTA-TGAGTATTCATGTT
* * * * **
135132 TATCTCATTT--GCAGCACAAA-TTTAGACTT-TA-CAAAAATTGGTTGG-GAG-AAAGCCCTTC
186 TGTCTTATTTAAG-AG-ACAAACTTT-GA-TTCTATCAAAAA-CGG-TGGAAAGAAAAGCTTTTC
* * * * * * * * * * ** *
135190 TTGCGAAACTAAAGCATCAATATCGTGTATCATTATG-AGAAGACTATGTTTATGGGGCCTAAT-
245 TTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAG-GGAATGTGTTTTTGGTTCCCAATC
* * * * * * * ** * *
135253 TCTGAAAATAATGGGGATTAG-TATGACTATTC-ATGTTTGTCTTATTTAAGCAATAAAACTTTA
309 T-TGAAAAGAATGGAGACT-GTTAAGA-GAATCAATGCTTGTCTTATTTAAGGGAT-GAACTTTG
*** * * * * ** * ** * * *
135316 ATTTTATCAAAAAT-GGTGGAAATAATAGCTTTTC-TTTAGACACCAAAGCATTAATATCATGTA
370 ATTTTAAGGAAAATAGG-GCAAAGAAAAG-ATTTCATGCA-AAAGAAAATCATCAATATCATTTA
*** * * *
135379 TCCTAATGAGGAGAATGACATTATAGTCCCTAATAACAAAGTGA
432 TCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGA
* * * * * *
135423 CTGAAGATCAATACTAGAATCTATGTTTGTCACATGTGAGGCATGACCATAGACTTTACAAAAAT
1 ATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACATAGACTTTACAAAAAT
* * *** * * *
135488 AGGTGGGAAGAAAGCTTTTGC-TACAAAACCAAAGCATCAATATCGTGTATCCTTATGGGAAAAC
66 TGGTGGGAAGAAAGCCTTT-CTTGTGAAACCAAAGCATCAATATCATGTATCCTTATGAGAAGAC
* * *
135552 TAAGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATT
130 TATGTTTATGGTGCCTAATCCTGAAAAGAATAGGGATTAGTATGAGTATTCATGTTTGTCTTATT
* * * * **
135617 TAAGAGACAAACTTTAATTCTATCAAAAAAGGTGGAAAGAATAGCTTTTCTTGTGACACTGAAGC
195 TAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGC
** * * *
135682 ATCAAAATCATGTATCCTAATAAAGGGAATGTGTTCTTGGTTCCCAATCTTCAAAAGAATGGAGA
260 ATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGA
* * * ** * * *
135747 CTGCTACGAGAATCAATGATTGTCAAATTTAAGGGATGAATTTTGTTTTTAAGAAAAATAGGGCA
325 CTGTTAAGAGAATCAATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCA
* * *
135812 AAGAAAAGATTTTCATCCAAAAGAAAATCATCAATATCATTTATCTTAATGAGGAGAATGTATTT
390 AAGAAAAGA-TTTCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTT
*
135877 ATAGTGCATAATCACAAAATGA
454 ATAGTGCCTAATCACAAAATGA
* * * * * *
135899 ATGATGATCATTAC-ATGAAACCATGCTTATCCCATTTGCGG--TGCAA-ATTTAGACTTTACAA
1 ATGAAGATCATTACTA-GAATCCATGTTTGTCTCATTTGAGGCATG-AACA--TAGACTTTACAA
* * * * * *
135960 AAATTGGATGGG-AGAAAGCCTTTCTTGCGAAACTAAAGCGTGAATATCGTGTATCCTTATGAGC
62 AAATTGG-TGGGAAGAAAGCCTTTCTTGTGAAACCAAAGCATCAATATCATGTATCCTTATGAGA
* * * * *
136024 AGACTATGTTTATGGTGCCTAATTC-GAAAAAGAATGGGGATTAGCATGACTATTTATGTTTGTC
126 AGACTATGTTTATGGTGCCTAATCCTG-AAAAGAATAGGGATTAGTATGAGTATTCATGTTTGTC
* * * * * *
136088 TTATTTAAGTGATAAACTTTAATTTTATCAAAAATGGTGGAAA-AAATAGCTTTTCTTGAGACAC
190 TTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAA-AGCTTTTCTTGCGACAC
* * ** * * *
136152 CAAAGCATCAATATCATGCATCCTAATGAAGGGAATGCCTTCTTGGTTCCAAATCTTGAATAGAA
254 CAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAA
* * * * * * *
136217 TGGAGACTGTTACGAGAATCGATGCTTGTCATATTTAAGGGATGAATTTTGATTTTTAGAAAAAA
319 TGGAGACTGTTAAGAGAATCAATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAAT
* * * **
136282 AAGGCAAAGAAAAGATTTCCATACAAAAGAAAATCATCAATATCATTTATTCTAATGACAAGAAT
384 AGGGCAAAGAAAAGATTT-CATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAAT
*
136347 GTATTTATAGTGCCTAATCACAAAATGA
448 GTGTTTATAGTGCCTAATCACAAAATGA
* * *
136375 ATAAAAATCATTACTAGAATTCATGTTTGTCTCATTTGAGGCATGAACATAGAC-TTACAAAAAT
1 ATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACATAGACTTTACAAAAAT
* * * ** * * * *
136439 TGGTTGTAAAAAAGCCTTTCTTGCAAAACTAAAGCTTCAATATCGTGTATCCTTATGAGAATACT
66 TGGTGGGAAGAAAGCCTTTCTTGTGAAACCAAAGCATCAATATCATGTATCCTTATGAGAAGACT
**** * **
136504 ATGTTTATGGCATTTAATCCTGAAAAGAAT-GGAGATTTGTAAAACG-ATTCATGTTTGTCTTAT
131 ATGTTTATGGTGCCTAATCCTGAAAAGAATAGG-GATTAGTATGA-GTATTCATGTTTGTCTTAT
* * * *
136567 TTAAGAGACAAACTCTTTGATTCTATCAAAAATGGTGGAAAGAAAAACTATTCTTACGACACCAA
194 TTAAGAGACAAA--CTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAA
* * *
136632 AGCATCAATGACATGTATCCTAATCAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGG
257 AGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGG
* * * * *
136697 AGATTGTTACA-AGAATCGATGCTTATCTTATTTGAGGGATGAACTTTGATTTTAAGAAAAATAG
322 AGACTGTTA-AGAGAATCAATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAG
* * * *
136761 GGCCACGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTATTGAGAAGAATGT
386 GGCAAAGAAAAGATTT-CATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGT
** * *
136826 GTTTATAGTGTTTAATAACAAAATAA
450 GTTTATAGTGCCTAATCACAAAATGA
* * * ** * ** * * *
136852 ATGAAAATCATCACTAGAATCCACGAATGAC-CTATTTGAGGCACAAACTTACACTTTACGAAAA
1 ATGAAGATCATTACTAGAATCCATGTTTGTCTC-ATTTGAGGCATGAACATAGACTTTACAAAAA
* * * ** * * *
136916 TTGGTGGGAAGAAAGCCTTTCCTT-CGAAGCCAAAGCATTAATATTGTCTATCCTAAGGAGAAGA
65 TTGGTGGGAAGAAAGCCTTT-CTTGTGAAACCAAAGCATCAATATCATGTATCCTTATGAGAAGA
* * * * * * *
136980 TTATGTTTAGGGTGCCTAATCCTTAGAAGAATAGAGATTAGTGTGACTATTCATGTTTGTCTTAT
129 CTATGTTTATGGTGCCTAATCCTGAAAAGAATAGGGATTAGTATGAGTATTCATGTTTGTCTTAT
** * *
137045 TTAAGAGACAAACTTTGATTCTAAAAAAAACGGTGGAAAAAAAAGCTTTTCTT-CCAGCACCAAA
194 TTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGA-CACCAAA
* *
137109 GCATCAAGGTCATGTATCCTAATGAAGGAAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGA
258 GCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGA
* ** * * *
137174 GA-T-TATAATGAAAATTGATGCTTGTCATATTTAAGGGATGAATTTTGATTTTAGGGAAAATAG
323 GACTGT-TAA-GAGAATCAATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAG
* *
137237 GGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTATCTTGATGAGGA-ATATG
386 GGCAAAGAAAAGA-TTTCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGA-ATG
*
137301 TATTTATAGTGCCTAATCACAAAATGA
449 TGTTTATAGTGCCTAATCACAAAATGA
* * ** * * ** * *
137328 TTGAATATCATTACTAGAATGAATGTTTGTCTTATTTGAGGTATGAATTTATATTTTACAAAAAT
1 ATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACATAGACTTTACAAAAAT
* ** * *
137393 TGGTTGGAAGAAAGCCTTTCTTGTGAAACCAAAGTGTCAATATCGTGTATCCTTATGAGAAAACT
66 TGGTGGGAAGAAAGCCTTTCTTGTGAAACCAAAGCATCAATATCATGTATCCTTATGAGAAGACT
* * * * * *
137458 CTGTTTGTGGTGCTTAATCCTGAAAAGAAT-GGGGTTAGTATAACTATTCATGTTTGTCTTATTT
131 ATGTTTATGGTGCCTAATCCTGAAAAGAATAGGGATTAGTATGAGTATTCATGTTTGTCTTATTT
* * * *
137522 AAGAGACAAACTTTGATTCTATAAAAAACGGT-GAAAAAAAATCTTTTCTTGCAACACCAAAGCA
196 AAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCA
* * * *
137586 TCAATGTCATGTATCCTAATGAAGGG-ATGTGTTTTCGGTTCCCAATCTCGAGAGGAATGGAGAC
261 TCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGAC
** * * * *
137650 TGTTTTGAGAATCGATGCTTGTCATATTTAAGGGATGAATTTTGATTTTAAGGAAAATAAGGCAA
326 TGTTAAGAGAATCAATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAA
* * * * **
137715 AGAAAAGATTTTCATGTAAAAGAAAATCATCAATCTTAGTTATCCTAATGAGGAGAAACTGTTTA
391 AGAAAAGA-TTTCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTA
*
137780 TAGTGCCTAACCACAAAATGA
455 TAGTGCCTAATCACAAAATGA
* ** * * ** *
137801 ATGAAGATCATGACTAGAATTTATGTTTATCTCATTTGAGGCACGAATTTGGACTTTACAAAAAT
1 ATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACATAGACTTTACAAAAAT
* * * * *** * * * *
137866 TGGCGAGAA-AAGGTCCTTTTTTACAAAACCAAAGCGTCAATGTCGTGTATCCCTATGAGAAGAC
66 TGGTGGGAAGAAAG-CCTTTCTTGTGAAACCAAAGCATCAATATCATGTATCCTTATGAGAAGAC
* * * * *
137930 AATGCTTATGGTGCCTAATCTTGAAAAGAATGGGGATTAGTATGACTATTCATG--T-TCTTATT
130 TATGTTTATGGTGCCTAATCCTGAAAAGAATAGGGATTAGTATGAGTATTCATGTTTGTCTTATT
* * *
137992 TAAGAGACATACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACATCAAAGC
195 TAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGC
* * ** * *
138057 ATCAATGTCATGTATCATAAAGAAGGGAATGTGTTTTTGGTT-TAAATCATGAAAAGAGTGGAGA
260 ATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGA
* * * *
138121 CTGTTACGAGAA-CTTATGCTTGTCCTT-TTTAAGAGATGAATTTTGATTTTAAGGAAAATAGGG
325 CTGTTAAGAGAATC-AATGCTTGT-CTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGG
* *
138184 CAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAAGAGAATGTAT
388 CAAAGAAAAGATTT-CATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGT
*
138249 TTATAGTGCCTAATAACAAAATGA
452 TTATAGTGCCTAATCACAAAATGA
* *** *
138273 ATGAAGATCATTACTAGAATCCATGTTTGCCTCATTTGAGGCGCAAACTTAGACTTTACAAAAAT
1 ATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACATAGACTTTACAAAAAT
* * * * * * * *
138338 TGGCT-AGAAGAAAGGCTTTCTTG-CAAATTCAAAGCGTTAATATCGTGTATCCTAATGAGAAGA
66 TGG-TGGGAAGAAAGCCTTTCTTGTGAAA-CCAAAGCATCAATATCATGTATCCTTATGAGAAGA
* * * *
138401 CTATGTTTATGTTGCCTAATCCTGATAAGAATGGGGATTAGTATGACTAGTT-ATGTTTGTCTTA
129 CTATGTTTATGGTGCCTAATCCTGAAAAGAATAGGGATTAGTATGAGTA-TTCATGTTTGTCTTA
* * * *
138465 TTTAAGAGACTAACTTTGATTCTATAAAAAACGGTGG-AATAAAAGCTTTTCTTGCGACACCATA
193 TTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAA
* * * * * *
138529 GCATCAATGTAATGTATCCTAATAAAGAGAATGTGTTTTTGGTTACTAATCTTGAAAATAATGGA
258 GCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGA
* * * * * * * *
138594 GACTGTTATGAGAATCGATACTTGTCATAATTAAGGGATTAATTTTGATTTTAATGAAAATAGGG
323 GACTGTTAAGAGAATCAATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGG
* *
138659 CAAAGAAAATATTTTCATGCAAATGAAAATCATCAATATCATTT
388 CAAAGAAAAGA-TTTCATGCAAAAGAAAATCATCAATATCATTT
138703 TGAAGCATGA
Statistics
Matches: 8862, Mismatches: 2010, Indels: 1155
0.74 0.17 0.10
Matches are distributed among these distances:
465 8 0.00
466 3 0.00
467 142 0.02
468 547 0.06
469 381 0.04
470 46 0.01
471 332 0.04
472 803 0.09
473 437 0.05
474 683 0.08
475 1497 0.17
476 2157 0.24
477 921 0.10
478 216 0.02
479 6 0.00
480 12 0.00
481 7 0.00
482 5 0.00
483 2 0.00
484 11 0.00
485 6 0.00
486 5 0.00
487 3 0.00
488 8 0.00
489 13 0.00
490 8 0.00
491 11 0.00
492 7 0.00
493 2 0.00
494 9 0.00
495 5 0.00
496 14 0.00
497 16 0.00
498 6 0.00
499 26 0.00
500 20 0.00
501 10 0.00
502 23 0.00
503 6 0.00
504 12 0.00
505 9 0.00
506 3 0.00
508 8 0.00
509 17 0.00
510 19 0.00
511 18 0.00
512 26 0.00
513 21 0.00
514 15 0.00
515 17 0.00
516 15 0.00
517 19 0.00
518 9 0.00
519 9 0.00
520 9 0.00
521 3 0.00
522 2 0.00
523 5 0.00
524 5 0.00
525 13 0.00
526 12 0.00
527 7 0.00
528 5 0.00
529 8 0.00
530 20 0.00
531 15 0.00
532 11 0.00
533 12 0.00
534 2 0.00
535 2 0.00
536 3 0.00
537 2 0.00
538 5 0.00
539 1 0.00
540 7 0.00
541 13 0.00
542 14 0.00
543 12 0.00
544 13 0.00
545 11 0.00
546 1 0.00
547 2 0.00
548 5 0.00
549 5 0.00
551 6 0.00
ACGTcount: A:0.36, C:0.14, G:0.18, T:0.32
Consensus pattern (475 bp):
ATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACATAGACTTTACAAAAAT
TGGTGGGAAGAAAGCCTTTCTTGTGAAACCAAAGCATCAATATCATGTATCCTTATGAGAAGACT
ATGTTTATGGTGCCTAATCCTGAAAAGAATAGGGATTAGTATGAGTATTCATGTTTGTCTTATTT
AAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCA
TCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGAC
TGTTAAGAGAATCAATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAA
AGAAAAGATTTCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTAT
AGTGCCTAATCACAAAATGA
Found at i:135650 original size:158 final size:158
Alignment explanation
Indices: 135194--135667 Score: 387
Period size: 158 Copynumber: 3.0 Consensus size: 158
135184 CCCTTCTTGC
* * * * * * *
135194 GAAACTAAAGCATCAATATCGTGTATCATTATGAGAAGACTATGTTTATGGGGCCTAATTCTGAA
1 GAAACCAAAGCATCAATATCGTGTATCCTTATGGGAAAACTAAGTTTATGGTGCCTAATACTGAA
* *
135259 AATAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGCA-ATAAAACTTTAATTTTAT
66 AAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAG-AGA-CAAACTTTAA-TTTAT
* * **
135323 CAAAAATGGTGGAAATAATAGCTTTTCTTTA
128 CAAAAAAGGTGGAAAGAATAGCTTTTCTACA
* * * * * * ** * *
135354 GACACCAAAGCATTAATATCATGTATCCTAATGAGGAGAA-TGACATTATAGTCCCTAATAAC--
1 GAAACCAAAGCATCAATATCGTGTATCCTTATG-GGAAAACTAAGTTTATGGTGCCTAAT-ACTG
* * ** * * ** * * * **
135416 AAAGTGACTGAAGATCA--AT-ACTAGAATCTATGTTTGTCACATGT--GAGGCATGACCATAGA
64 AAA-AGAATGGGGATTAGTATGACT--ATTC-ATGTTTGTCTTATTTAAGAGACA-AACTTTA-A
*
135476 CTTTA-CAAAAATAGGTGGGAAGAA-AGCTTTTGCTACA
123 -TTTATCAAAAA-AGGTGGAAAGAATAGCTTTT-CTACA
*
135513 -AAACCAAAGCATCAATATCGTGTATCCTTATGGGAAAACTAAGTTTATGGTGCCTAATCCTGAA
1 GAAACCAAAGCATCAATATCGTGTATCCTTATGGGAAAACTAAGTTTATGGTGCCTAATACTGAA
135577 AAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTAATTCTATCA
66 AAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTAATT-TATCA
135642 AAAAAGGTGGAAAGAATAGCTTTTCT
130 AAAAAGGTGGAAAGAATAGCTTTTCT
135668 TGTGACACTG
Statistics
Matches: 229, Mismatches: 63, Indels: 46
0.68 0.19 0.14
Matches are distributed among these distances:
157 13 0.06
158 98 0.43
159 46 0.20
160 65 0.28
161 7 0.03
ACGTcount: A:0.37, C:0.14, G:0.18, T:0.32
Consensus pattern (158 bp):
GAAACCAAAGCATCAATATCGTGTATCCTTATGGGAAAACTAAGTTTATGGTGCCTAATACTGAA
AAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTAATTTATCAA
AAAAGGTGGAAAGAATAGCTTTTCTACA
Found at i:136309 original size:794 final size:794
Alignment explanation
Indices: 134701--136188 Score: 2169
Period size: 794 Copynumber: 1.9 Consensus size: 794
134691 AAATTCGGGG
* * * ** * * *
134701 AAGAAAGCTTTTCTTGCAAAACCAAAGCGGCAATATCGTGTATCTTTATGAGAAGACTATGTTTA
1 AAGAAAGCATTTCCTACAAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAAACTAAGTTTA
134766 TGGTGCCTAATCCTGAAAAGAATGGAGATTAGTATAGCTATTCATGTTTGTCTTATTTAAAAGAC
66 TGGTGCCTAATCCTGAAAAGAATGGAGATTAGTATAGCTATTCATGTTTGTCTTATTTAAAAGAC
* * **
134831 AAACTTCGATTCTATCAAAAACGGTGGAAAGAAAAGCTGTTCTTGCAACACCAAAGCATCAATCT
131 AAACTTCAATTCTATCAAAAAAGGTGGAAAGAAAAGCTGTTCTTGCAACACCAAAGCATCAAAAT
* * *
134896 CATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCTTAAAAAGAATAGAGACTGTTACG
196 CATGTATCCTAATAAAGGGAATGTGTTCTTGGTTCCCAATCTTAAAAAGAATAGAGACTGCTACG
* ** * *
134961 AGAATCAAAGCTTCCCTTATTTAAGGGATGAATTTTCATTTTTAGGAAAATAGGTCAAAGAAAAG
261 AGAATCAAAGATTCCCAAATTTAAGGGATGAATTTTCATTTTTAGAAAAATAGGGCAAAGAAAAG
* * * * *
135026 TTTTTGATGCAAAAGAAAATCATCAATATCATTTATCCTAATAAGGAGAATGTATTTGTAATGCC
326 ATTTTCATCCAAAAGAAAATCATCAATATCATTTATCCTAATAAGGAGAATGTATTTATAATGCA
*
135091 TAATCACAAAATGAATAAAGATCAATACTAGAAACCATGCTTATCTCATTTGCAGCACAAATTTA
391 TAATCACAAAATGAATAAAGATCAATACTAGAAACCATGCTTATCCCATTTGCAGCACAAATTTA
*
135156 GACTTTACAAAAATTGGTTGGGAGAAAGCCCTTCTTGCGAAACTAAAGCATCAATATCGTGTATC
456 GACTTTACAAAAATTGGATGGGAGAAAGCCCTTCTTGCGAAACTAAAGCATCAATATCGTGTATC
* *
135221 ATTATGAGAAGACTATGTTTATGGGGCCTAATTCTGAAAATAATGGGGATTAGTATGACTATTCA
521 ATTATGAGAAGACTATGTTTATGGGGCCTAATTCTGAAAAGAATGGGGATTAGCATGACTATTCA
*
135286 TGTTTGTCTTATTTAAGCAATAAAACTTTAATTTTATCAAAAATGGTGGAAATAATAGCTTTTCT
586 TGTTTGTCTTATTTAAGCAATAAAACTTTAATTTTATCAAAAATGGTGGAAAAAATAGCTTTTCT
* * * *
135351 TTAGACACCAAAGCATTAATATCATGTATCCTAATGAGGAGAATGACATTATAGTCCCTAATAAC
651 TGAGACACCAAAGCATCAATATCATGCATCCTAATGAGGAGAATGACATTATAGTCCCAAATAAC
* * * * * *
135416 AAAGTGACTGAAGATCAATACTAGAATCTATGTTTGTCACATGTGAGGCATGACCATAGACTTTA
716 AAAGTGAATGAAGATCAATACGAGAATCGATGCTTGTCACATGTAAGGCATGAACATAGACTTTA
* * **
135481 CAAAAATAGGTGGG
781 CAAAAAAAAGTGCA
* * *
135495 AAGAAAGCTTTTGCTACAAAACCAAAGCATCAATATCGTGTATCCTTATGGGAAAACTAAGTTTA
1 AAGAAAGCATTTCCTACAAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAAACTAAGTTTA
* *
135560 TGGTGCCTAATCCTGAAAAGAATGGGGATTAGTAT-GACTATTCATGTTTGTCTTATTTAAGAGA
66 TGGTGCCTAATCCTGAAAAGAATGGAGATTAGTATAG-CTATTCATGTTTGTCTTATTTAAAAGA
* * * ** **
135624 CAAACTTTAATTCTATCAAAAAAGGTGGAAAGAATAGCTTTTCTTGTGACACTGAAGCATCAAAA
130 CAAACTTCAATTCTATCAAAAAAGGTGGAAAGAAAAGCTGTTCTTGCAACACCAAAGCATCAAAA
* *
135689 TCATGTATCCTAATAAAGGGAATGTGTTCTTGGTTCCCAATCTTCAAAAGAATGGAGACTGCTAC
195 TCATGTATCCTAATAAAGGGAATGTGTTCTTGGTTCCCAATCTTAAAAAGAATAGAGACTGCTAC
* ** *
135754 GAGAATCAATGATTGTCAAATTTAAGGGATGAATTTT-GTTTTTAAGAAAAATAGGGCAAAGAAA
260 GAGAATCAAAGATTCCCAAATTTAAGGGATGAATTTTCATTTTT-AGAAAAATAGGGCAAAGAAA
* * *
135818 AGATTTTCATCCAAAAGAAAATCATCAATATCATTTATCTTAATGAGGAGAATGTATTTATAGTG
324 AGATTTTCATCCAAAAGAAAATCATCAATATCATTTATCCTAATAAGGAGAATGTATTTATAATG
* * * * **
135883 CATAATCACAAAATGAATGATGATCATTAC-ATGAAACCATGCTTATCCCATTTGCGGTGCAAAT
389 CATAATCACAAAATGAATAAAGATCAATACTA-GAAACCATGCTTATCCCATTTGCAGCACAAAT
* * *
135947 TTAGACTTTACAAAAATTGGATGGGAGAAAGCCTTTCTTGCGAAACTAAAGCGTGAATATCGTGT
453 TTAGACTTTACAAAAATTGGATGGGAGAAAGCCCTTCTTGCGAAACTAAAGCATCAATATCGTGT
* * *
136012 ATCCTTATGAGCAGACTATGTTTATGGTGCCTAATTC-GAAAAAGAATGGGGATTAGCATGACTA
518 ATCATTATGAGAAGACTATGTTTATGGGGCCTAATTCTG-AAAAGAATGGGGATTAGCATGACTA
* **
136076 TTTATGTTTGTCTTATTTAAGTGAT-AAACTTTAATTTTATCAAAAATGGTGGAAAAAATAGCTT
582 TTCATGTTTGTCTTATTTAAGCAATAAAACTTTAATTTTATCAAAAATGGTGGAAAAAATAGCTT
136140 TTCTTGAGACACCAAAGCATCAATATCATGCATCCTAATGAAGG-GAATG
647 TTCTTGAGACACCAAAGCATCAATATCATGCATCCTAATG-AGGAGAATG
136189 CCTTCTTGGT
Statistics
Matches: 622, Mismatches: 67, Indels: 11
0.89 0.10 0.02
Matches are distributed among these distances:
793 88 0.14
794 534 0.86
ACGTcount: A:0.37, C:0.14, G:0.18, T:0.31
Consensus pattern (794 bp):
AAGAAAGCATTTCCTACAAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAAACTAAGTTTA
TGGTGCCTAATCCTGAAAAGAATGGAGATTAGTATAGCTATTCATGTTTGTCTTATTTAAAAGAC
AAACTTCAATTCTATCAAAAAAGGTGGAAAGAAAAGCTGTTCTTGCAACACCAAAGCATCAAAAT
CATGTATCCTAATAAAGGGAATGTGTTCTTGGTTCCCAATCTTAAAAAGAATAGAGACTGCTACG
AGAATCAAAGATTCCCAAATTTAAGGGATGAATTTTCATTTTTAGAAAAATAGGGCAAAGAAAAG
ATTTTCATCCAAAAGAAAATCATCAATATCATTTATCCTAATAAGGAGAATGTATTTATAATGCA
TAATCACAAAATGAATAAAGATCAATACTAGAAACCATGCTTATCCCATTTGCAGCACAAATTTA
GACTTTACAAAAATTGGATGGGAGAAAGCCCTTCTTGCGAAACTAAAGCATCAATATCGTGTATC
ATTATGAGAAGACTATGTTTATGGGGCCTAATTCTGAAAAGAATGGGGATTAGCATGACTATTCA
TGTTTGTCTTATTTAAGCAATAAAACTTTAATTTTATCAAAAATGGTGGAAAAAATAGCTTTTCT
TGAGACACCAAAGCATCAATATCATGCATCCTAATGAGGAGAATGACATTATAGTCCCAAATAAC
AAAGTGAATGAAGATCAATACGAGAATCGATGCTTGTCACATGTAAGGCATGAACATAGACTTTA
CAAAAAAAAGTGCA
Found at i:136399 original size:794 final size:792
Alignment explanation
Indices: 134701--136411 Score: 2012
Period size: 794 Copynumber: 2.2 Consensus size: 792
134691 AAATTCGGGG
* * * * ** * * * * * *
134701 AAGAAAGCTTTTCTTGCAAAACCAAAGCGGCAATATCGTGTATCTTTATGAGAAGACTATGTTTA
1 AAGAAAGCATTTCCTACAAAACAAAAGCATCAATATCATGTATCCTAATGACAAAACTAAGTTTA
* ** * *
134766 TGGTGCCTAATCCTGAAAAGAATGGAGATTAGTAT-AGCTATTCATGTTTGTCTTATTTAAAAGA
66 TAGTGCCTAATCC-GAAAAGAATAAAAATCAGTATGA-C-ATTCATGTTTGTCTTATTTAAAAGA
* * **
134830 CAAACTTCGATTCTATCAAAAACGGTGGAAAGAAAAGCTGTTCTTGCAACACCAAAGCATCAATC
128 CAAACTTCAATTCTATCAAAAAAGGTGGAAAGAAAAGCTGTTCTTGCAACACCAAAGCATCAAAA
* * *
134895 TCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCTTAAAAAGAATAGAGACTGTTAC
193 TCATGTATCCTAATAAAGGGAATGTGTTCTTGGTTCCCAATCTTAAAAAGAATAGAGACTGCTAC
* ** * *
134960 GAGAATCAAAGCTTCCCTTATTTAAGGGATGAATTTTCATTTTTAGGAAAATAGGTCAAAGAAAA
258 GAGAATCAAAGATTCCCAAATTTAAGGGATGAATTTTCATTTTTAGAAAAATAGGGCAAAGAAAA
* * * *
135025 GTTTTTGATGCAAAAGAAAATCATCAATATCATTTATCCTAATAAGGAGAATGTATTTGTAATGC
323 GATTTTCATCCAAAAGAAAATCATCAATATCATTTATCCTAATAAGGAGAATGTATTTATAATGC
* *
135090 CTAATCACAAAATGAATAAAGATCAATACTAGAAACCATGCTTATCTCATTTGCAGCACAAATTT
388 ATAATCACAAAATGAATAAAGATCAATACTAGAAACCATGCTTATCCCATTTGCAGCACAAATTT
*
135155 AGACTTTACAAAAATTGGTTGGGAGAAAGCCCTTCTTGCGAAACTAAAGCATCAATATCGTGTAT
453 AGACTTTACAAAAATTGGATGGGAGAAAGCCCTTCTTGCGAAACTAAAGCATCAATATCGTGTAT
* *
135220 CATTATGAGAAGACTATGTTTATGGGGCCTAATTCTGAAAATAATGGGGATTAGTATGACTATTC
518 CATTATGAGAAGACTATGTTTATGGGGCCTAATTCTGAAAAGAATGGGGATTAGCATGACTATTC
*
135285 ATGTTTGTCTTATTTAAGCAATAAAACTTTAATTTTATCAAAAATGGTGGAAATAATAGCTTTTC
583 ATGTTTGTCTTATTTAAGCAATAAAACTTTAATTTTATCAAAAATGGTGGAAAAAATAGCTTTTC
* * * *
135350 TTTAGACACCAAAGCATTAATATCATGTATCCTAATGAGGAGAATGACATTATAGTCCCTAATAA
648 TTGAGACACCAAAGCATCAATATCATGCATCCTAATGAGGAGAATGACATTATAGTCCCAAATAA
* * * * * *
135415 CAAAGTGACTGAAGATCAATACTAGAATCTATGTTTGTCACATGTGAGGCATGACCATAGACTTT
713 CAAAGTGAATGAAGATCAATACGAGAATCGATGCTTGTCACATGTAAGGCATGAACATAGACTTT
* * **
135480 ACAAAAATAGGTGGG
778 ACAAAAAAAAGTGCA
* * * * * **
135495 AAGAAAGCTTTTGCTACAAAACCAAAGCATCAATATCGTGTATCCTTATGGGAAAACTAAGTTTA
1 AAGAAAGCATTTCCTACAAAACAAAAGCATCAATATCATGTATCCTAATGACAAAACTAAGTTTA
* **** * *
135560 TGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGAC
66 TAGTGCCTAATCC-GAAAAGAATAAAAATCAGTATGAC-ATTCATGTTTGTCTTATTTAAAAGAC
* * * ** **
135625 AAACTTTAATTCTATCAAAAAAGGTGGAAAGAATAGCTTTTCTTGTGACACTGAAGCATCAAAAT
129 AAACTTCAATTCTATCAAAAAAGGTGGAAAGAAAAGCTGTTCTTGCAACACCAAAGCATCAAAAT
* *
135690 CATGTATCCTAATAAAGGGAATGTGTTCTTGGTTCCCAATCTTCAAAAGAATGGAGACTGCTACG
194 CATGTATCCTAATAAAGGGAATGTGTTCTTGGTTCCCAATCTTAAAAAGAATAGAGACTGCTACG
* ** *
135755 AGAATCAATGATTGTCAAATTTAAGGGATGAATTTT-GTTTTTAAGAAAAATAGGGCAAAGAAAA
259 AGAATCAAAGATTCCCAAATTTAAGGGATGAATTTTCATTTTT-AGAAAAATAGGGCAAAGAAAA
* * *
135819 GATTTTCATCCAAAAGAAAATCATCAATATCATTTATCTTAATGAGGAGAATGTATTTATAGTGC
323 GATTTTCATCCAAAAGAAAATCATCAATATCATTTATCCTAATAAGGAGAATGTATTTATAATGC
* * * * **
135884 ATAATCACAAAATGAATGATGATCATTAC-ATGAAACCATGCTTATCCCATTTGCGGTGCAAATT
388 ATAATCACAAAATGAATAAAGATCAATACTA-GAAACCATGCTTATCCCATTTGCAGCACAAATT
* * *
135948 TAGACTTTACAAAAATTGGATGGGAGAAAGCCTTTCTTGCGAAACTAAAGCGTGAATATCGTGTA
452 TAGACTTTACAAAAATTGGATGGGAGAAAGCCCTTCTTGCGAAACTAAAGCATCAATATCGTGTA
* * *
136013 TCCTTATGAGCAGACTATGTTTATGGTGCCTAATTC-GAAAAAGAATGGGGATTAGCATGACTAT
517 TCATTATGAGAAGACTATGTTTATGGGGCCTAATTCTG-AAAAGAATGGGGATTAGCATGACTAT
* **
136077 TTATGTTTGTCTTATTTAAGTGAT-AAACTTTAATTTTATCAAAAATGGTGGAAAAAATAGCTTT
581 TCATGTTTGTCTTATTTAAGCAATAAAACTTTAATTTTATCAAAAATGGTGGAAAAAATAGCTTT
* * * *
136141 TCTTGAGACACCAAAGCATCAATATCATGCATCCTAATGAAGG-GAATG-CCTTCTTGGTTCCAA
646 TCTTGAGACACCAAAGCATCAATATCATGCATCCTAATG-AGGAGAATGACATT-ATAGTCCCAA
**** * ** * * * ** *
136204 ATCTTGAA-TAGAATGGAGA-CTGTTACGAGAATCGATGCTTGTCATATTTAAGGGATGAATTTT
709 ATAACAAAGT-GAATGAAGATC-AATACGAGAATCGATGCTTGTCACATGTAAGGCATGAACATA
* *
136267 GATTTTTAGAAAAAAAAG-GCA
772 GA-CTTTACAAAAAAAAGTGCA
* * * * *
136288 AAGAAAAG-ATTTCCATACAAAAGAAAATCATCAATATCATTTATTCTAATGACAAGAA-TGTA-
1 AAG-AAAGCATTTCC-TACAAAACAAAAGCATCAATATCATGTATCCTAATGACAA-AACT-AAG
* *
136350 TTTATAGTGCCTAATCAC-AAAATGAATAAAAATCATTACTAGA-ATTCATGTTTGTCTCATTT
62 TTTATAGTGCCTAATC-CGAAAA-GAATAAAAATCAGTA-T-GACATTCATGTTTGTCTTATTT
136412 GAGGCATGAA
Statistics
Matches: 783, Mismatches: 117, Indels: 34
0.84 0.13 0.04
Matches are distributed among these distances:
792 5 0.01
793 147 0.19
794 623 0.80
795 6 0.01
796 2 0.00
ACGTcount: A:0.37, C:0.14, G:0.18, T:0.31
Consensus pattern (792 bp):
AAGAAAGCATTTCCTACAAAACAAAAGCATCAATATCATGTATCCTAATGACAAAACTAAGTTTA
TAGTGCCTAATCCGAAAAGAATAAAAATCAGTATGACATTCATGTTTGTCTTATTTAAAAGACAA
ACTTCAATTCTATCAAAAAAGGTGGAAAGAAAAGCTGTTCTTGCAACACCAAAGCATCAAAATCA
TGTATCCTAATAAAGGGAATGTGTTCTTGGTTCCCAATCTTAAAAAGAATAGAGACTGCTACGAG
AATCAAAGATTCCCAAATTTAAGGGATGAATTTTCATTTTTAGAAAAATAGGGCAAAGAAAAGAT
TTTCATCCAAAAGAAAATCATCAATATCATTTATCCTAATAAGGAGAATGTATTTATAATGCATA
ATCACAAAATGAATAAAGATCAATACTAGAAACCATGCTTATCCCATTTGCAGCACAAATTTAGA
CTTTACAAAAATTGGATGGGAGAAAGCCCTTCTTGCGAAACTAAAGCATCAATATCGTGTATCAT
TATGAGAAGACTATGTTTATGGGGCCTAATTCTGAAAAGAATGGGGATTAGCATGACTATTCATG
TTTGTCTTATTTAAGCAATAAAACTTTAATTTTATCAAAAATGGTGGAAAAAATAGCTTTTCTTG
AGACACCAAAGCATCAATATCATGCATCCTAATGAGGAGAATGACATTATAGTCCCAAATAACAA
AGTGAATGAAGATCAATACGAGAATCGATGCTTGTCACATGTAAGGCATGAACATAGACTTTACA
AAAAAAAGTGCA
Found at i:136611 original size:794 final size:789
Alignment explanation
Indices: 134701--136612 Score: 1738
Period size: 794 Copynumber: 2.4 Consensus size: 789
134691 AAATTCGGGG
* * * * ** * * * * * *
134701 AAGAAAGCTTTTCTTGCAAAACCAAAGCGGCAATATCGTGTATCTTTATGAGAAGACTATGTTTA
1 AAGAAAGCATTTCCTACAAAACAAAAGCATCAATATCATGTATCCTAATGACAAAACTAAGTTTA
* ** * * * *
134766 TGGTGCCTAATCCTGAAAAGAATGGAGATTAGTAT-AGCTATTCATGTTTGTCTTATTTAAAAGA
66 TAGTGCCTAATCC-GAAAAGAATAAAAATCAGTATGA-C-ATTCATGTTTGTCTCATTT-AGAGA
* * * * * *
134830 CAAACT-TCGATTCTATCAAAAACGGTGGAAAGAAAAG-CTGTTCTTGCAACACCAAAGCATCAA
127 CAAACTAT-AACTCTATCAAAAAAGGTGGAAAGAATAGCCT-TTCTTGCAAAACTAAAGCATCAA
** * * * * * * *
134893 TCTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCTTAAAAAGAATAGAGACTGTT
190 AATCATGTATCCTAAT-AAAGGAATATGTTCTTGGTT-CCAATCCTCAAAAGAATGGAGACTGCT
** * * ** ** * ** * * * ** *
134958 ACGAGAATCAAAGCTTCCCTTATTTAAGGGATGAATTTTCATTTTTAGGAAAATAGGTCAAAGAA
253 AAAAGAATCAATGATTGTCAAATTTAAGAGACAAATTTTGATTCTAACAAAAATAGGGCAAAGAA
* * * *
135023 AAGTTTTTGATGCAAAAGAAAATCATCAATATCATTTATCCTAATAAGGAGAATGTATTTGTAAT
318 AAGATTTTCATCCAAAAGAAAATCATCAATATCATTTATCCTAATAAGGAGAATGTATTTATAAT
* *
135088 GCCTAATCACAAAATGAATAAAGATCAATACTAGAAACCATGCTTATCTCATTTGCAGCACAAAT
383 GCATAATCACAAAATGAATAAAGATCAATACTAGAAACCATGCTTATCCCATTTGCAGCACAAAT
*
135153 TTAGACTTTACAAAAATTGGTTGGGAGAAAGCCCTTCTTGCGAAACTAAAGCATCAATATCGTGT
448 TTAGACTTTACAAAAATTGGATGGGAGAAAGCCCTTCTTGCGAAACTAAAGCATCAATATCGTGT
* *
135218 ATCATTATGAGAAGACTATGTTTATGGGGCCTAATTCTGAAAATAATGGGGATTAGTATGACTAT
513 ATCATTATGAGAAGACTATGTTTATGGGGCCTAATTCTGAAAAGAATGGGGATTAGCATGACTAT
*
135283 TCATGTTTGTCTTATTTAAGCAATAAAACTTTAATTTTATCAAAAATGGTGGAAATAATAGCTTT
578 TCATGTTTGTCTTATTTAAGCAATAAAACTTTAATTTTATCAAAAATGGTGGAAAAAATAGCTTT
* * * *
135348 TCTTTAGACACCAAAGCATTAATATCATGTATCCTAATGAGGAGAATGACATTATAGTCCCTAAT
643 TCTTGAGACACCAAAGCATCAATATCATGCATCCTAATGAGGAGAATGACATTATAGTCCCAAAT
* * * * * *
135413 AACAAAGTGACTGAAGATCAATACTAGAATCTATGTTTGTCACATGTGAGGCATGACCATAGACT
708 AACAAAGTGAATGAAGATCAATACGAGAATCGATGCTTGTCACATGTAAGGCATGAACATAGACT
* * **
135478 TTACAAAAATAGGTGGG
773 TTACAAAAAAAAGTGCA
* * * * * **
135495 AAGAAAGCTTTTGCTACAAAACCAAAGCATCAATATCGTGTATCCTTATGGGAAAACTAAGTTTA
1 AAGAAAGCATTTCCTACAAAACAAAAGCATCAATATCATGTATCCTAATGACAAAACTAAGTTTA
* **** * *
135560 TGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGAC
66 TAGTGCCTAATCC-GAAAAGAATAAAAATCAGTATGAC-ATTCATGTTTGTCTCATTT-AGAGAC
* * * ** * *
135625 AAACTTTAATTCTATCAAAAAAGGTGGAAAGAATAGCTTTTCTTGTGACACTGAAGCATCAAAAT
128 AAACTATAACTCTATCAAAAAAGGTGGAAAGAATAGCCTTTCTTGCAAAACTAAAGCATCAAAAT
* * **
135690 CATGTATCCTAATAAAGGGAATGTGTTCTTGGTTCCCAATCTTCAAAAGAATGGAGACTGCTACG
193 CATGTATCCTAATAAA-GGAATATGTTCTTGGTT-CCAATCCTCAAAAGAATGGAGACTGCTAAA
* ** * * *
135755 AGAATCAATGATTGTCAAATTTAAGGGATGAATTTTGTTTTTAAGAAAAATAGGGCAAAGAAAAG
256 AGAATCAATGATTGTCAAATTTAAGAGACAAATTTTGATTCTAACAAAAATAGGGCAAAGAAAAG
* * *
135820 ATTTTCATCCAAAAGAAAATCATCAATATCATTTATCTTAATGAGGAGAATGTATTTATAGTGCA
321 ATTTTCATCCAAAAGAAAATCATCAATATCATTTATCCTAATAAGGAGAATGTATTTATAATGCA
* * * * **
135885 TAATCACAAAATGAATGATGATCATTAC-ATGAAACCATGCTTATCCCATTTGCGGTGCAAATTT
386 TAATCACAAAATGAATAAAGATCAATACTA-GAAACCATGCTTATCCCATTTGCAGCACAAATTT
* * *
135949 AGACTTTACAAAAATTGGATGGGAGAAAGCCTTTCTTGCGAAACTAAAGCGTGAATATCGTGTAT
450 AGACTTTACAAAAATTGGATGGGAGAAAGCCCTTCTTGCGAAACTAAAGCATCAATATCGTGTAT
* * *
136014 CCTTATGAGCAGACTATGTTTATGGTGCCTAATTC-GAAAAAGAATGGGGATTAGCATGACTATT
515 CATTATGAGAAGACTATGTTTATGGGGCCTAATTCTG-AAAAGAATGGGGATTAGCATGACTATT
* **
136078 TATGTTTGTCTTATTTAAGTGAT-AAACTTTAATTTTATCAAAAATGGTGGAAAAAATAGCTTTT
579 CATGTTTGTCTTATTTAAGCAATAAAACTTTAATTTTATCAAAAATGGTGGAAAAAATAGCTTTT
* * * *
136142 CTTGAGACACCAAAGCATCAATATCATGCATCCTAATGAAGG-GAATG-CCTTCTTGGTTCCAAA
644 CTTGAGACACCAAAGCATCAATATCATGCATCCTAATG-AGGAGAATGACATT-ATAGTCCCAAA
**** * ** * * * ** *
136205 TCTTGAA-TAGAATGGAGA-CTGTTACGAGAATCGATGCTTGTCATATTTAAGGGATGAATTTTG
707 TAACAAAGT-GAATGAAGATC-AATACGAGAATCGATGCTTGTCACATGTAAGGCATGAACATAG
* *
136268 ATTTTTAGAAAAAAAAG-GCA
770 A-CTTTACAAAAAAAAGTGCA
* * * * *
136288 AAGAAAAG-ATTTCCATACAAAAGAAAATCATCAATATCATTTATTCTAATGACAAGAA-TGTA-
1 AAG-AAAGCATTTCC-TACAAAACAAAAGCATCAATATCATGTATCCTAATGACAA-AACT-AAG
*
136350 TTTATAGTGCCTAATCAC-AAAATGAATAAAAATCATTACTAGA-ATTCATGTTTGTCTCATTT-
62 TTTATAGTGCCTAATC-CGAAAA-GAATAAAAATCAGTA-T-GACATTCATGTTTGTCTCATTTA
* * *
136412 GAGGCATGAAC-ATAGACT-TA-CAAAAATTGGTTGTAAA-AA-AGCCTTTCTTGCAAAACTAAA
123 GAGACA--AACTATA-ACTCTATCAAAAA-AGG-TGGAAAGAATAGCCTTTCTTGCAAAACTAAA
* * * * * * * *
136472 GCTTCAATATCGTGTATCCTTATGAGAA-TACTATGTT-TATGGCATT-TAATCCTGAAAAGAAT
183 GCATCAAAATCATGTATCCTAAT-A-AAGGAATATGTTCT-TGG--TTCCAATCCTCAAAAGAAT
* * * ** *
136534 GGAGATTTG-TAAAACGATTC-ATGTTTGTCTTATTTAAGAGACAAACTCTTTGATTCTATCAAA
243 GGAGA-CTGCTAAAA-GAATCAATGATTGTCAAATTTAAGAGACAAA-T-TTTGATTCTAACAAA
*
136597 AAT-GGTGGAAAGAAAA
304 AATAGG-GCAAAGAAAA
136613 ACTATTCTTA
Statistics
Matches: 931, Mismatches: 153, Indels: 68
0.81 0.13 0.06
Matches are distributed among these distances:
791 1 0.00
792 100 0.11
793 162 0.17
794 658 0.71
795 8 0.01
796 2 0.00
ACGTcount: A:0.37, C:0.14, G:0.18, T:0.31
Consensus pattern (789 bp):
AAGAAAGCATTTCCTACAAAACAAAAGCATCAATATCATGTATCCTAATGACAAAACTAAGTTTA
TAGTGCCTAATCCGAAAAGAATAAAAATCAGTATGACATTCATGTTTGTCTCATTTAGAGACAAA
CTATAACTCTATCAAAAAAGGTGGAAAGAATAGCCTTTCTTGCAAAACTAAAGCATCAAAATCAT
GTATCCTAATAAAGGAATATGTTCTTGGTTCCAATCCTCAAAAGAATGGAGACTGCTAAAAGAAT
CAATGATTGTCAAATTTAAGAGACAAATTTTGATTCTAACAAAAATAGGGCAAAGAAAAGATTTT
CATCCAAAAGAAAATCATCAATATCATTTATCCTAATAAGGAGAATGTATTTATAATGCATAATC
ACAAAATGAATAAAGATCAATACTAGAAACCATGCTTATCCCATTTGCAGCACAAATTTAGACTT
TACAAAAATTGGATGGGAGAAAGCCCTTCTTGCGAAACTAAAGCATCAATATCGTGTATCATTAT
GAGAAGACTATGTTTATGGGGCCTAATTCTGAAAAGAATGGGGATTAGCATGACTATTCATGTTT
GTCTTATTTAAGCAATAAAACTTTAATTTTATCAAAAATGGTGGAAAAAATAGCTTTTCTTGAGA
CACCAAAGCATCAATATCATGCATCCTAATGAGGAGAATGACATTATAGTCCCAAATAACAAAGT
GAATGAAGATCAATACGAGAATCGATGCTTGTCACATGTAAGGCATGAACATAGACTTTACAAAA
AAAAGTGCA
Found at i:137029 original size:953 final size:948
Alignment explanation
Indices: 135368--138702 Score: 4066
Period size: 953 Copynumber: 3.5 Consensus size: 948
135358 CCAAAGCATT
* * * * * *
135368 AATATCATGTATCCTAATGAGGAGAATG-ACATTATAGTCCCTAATAACAAAGTGACTGAAGATC
1 AATATCATTTATCCTAATGAGAAGAATGTA-TTTATAGTGCCTAATAACAAAATGAATGAAGATC
* * * * * *
135432 AATACTAGAA-TCTATGTTTGTCACATGTGAGGCATGACCATAGACTTTACAAAAATAGGTGGGA
65 ATTACTAGAATTC-ATGTTTGTCTCATTTGAGGCATGAACATAGACTTTACAAAAATTGGTTGGA
* * * * *
135496 AGAAAGCTTTTGC-TACAAAACCAAAGCATCAATATCGTGTATCCTTATGGGAAAACTAAGTTTA
129 AGAAAGCCTTT-CTTGCAAAACCAAAGCTTCAATATCGTGTATCCTTATGAGAAAACTATGTTTA
* *
135560 TGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGAC
193 TGGCGCCTAATCCTGAAAAGAATGGGGATTAGTATAACTATTCATGTTTGTCTTATTTAAGAGAC
* * * * ** *
135625 AAACTTTAATTCTATCAAAAAA-GGTGGAAAGAATAGCTTTTCTTGTGACACTGAAGCATCAA-A
258 AAACTTTGATTCTAT-AAAAAACGGTGGAAAGAAAAACTTTTCTTGCGACACCAAAGCATCAATG
* *
135688 ATCATGTATCCTAATAAAGGGAATGTGTTCTTGGTTCCCAATCTTCAAAAGAATGGAGACTGCTA
322 A-CATGTATCCTAATAAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTA
* * * *
135753 CGAGAATCAATGATTGTCAAATTTAAGGGATGAATTTTGTTTTTAAGAAAAATAGGGCAAAGAAA
386 CGAGAATCGATGCTTGTCATATTTAAGGGATGAATTTTGATTTTAAGAAAAATAGGGCAAAGAAA
* * *
135818 AGATTTTCATCCAAAAGAAAATCATCAATATCATTTATCTTAATGAGGAGAATGTATTTATAGTG
451 AGATTTTCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTG
* * * * * * **
135883 CATAATCACAAAATGAATGATGATCATTAC-ATGAAACCATGCTTATCCCATTTGCGGTGCAAAT
516 CATAATCACAAAATGAATGAAGATCATCACTA-GAATCCATGATTA-CCTATTTGAGGCACAAAT
* * *
135947 TTAGACTTTACAAAAATTGGATGGG-AGAAAGCCTTTCTTGCGAAACTAAAGCGTGAATATCGTG
579 TTAGACTTTACAAAAATTGG-TGGGAAGAAAGCCTTTCTTACGAAACCAAAGCGTCAATATCGTG
* ** *
136011 TATCCTTATGAGCAGACTATGTTTATGGTGCCTAATTCGAAAAAGAATGGGGATTAGCATGACTA
643 TATCC-TATGAGAAGACTATGTTTATGGTGCCTAA-TCTTAAAAGAATGGGGATTAGTATGACTA
* * * * *
136076 TTTATGTTTGTCTTATTTAAGTGATAAACTTTAATTTTATCAAAAATGGTGGAAAAAATAGCTTT
706 TTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAAAA-AGCTTT
* * ** *
136141 TCTTGAGACACCAAAGCATCAATATCATGCATCCTAATGAAGGGAATGCCTTCTTGGTTCCAAAT
770 TCTTGAGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCAAAT
*
136206 CTTGAATAGAATGGAGACTGTTACGAGAATCGATGCTTGTCATATTTAAGGGATGAATTTTGATT
835 CTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCATATTTAAGGGATGAATTTTGATT
* * * *
136271 TTTAGAAAAAAAAGGCAAAGAAAAGATTTCCATACAAAAGAAAATCATC
900 TTTAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATC
* * * * *
136320 AATATCATTTATTCTAATGACAAGAATGTATTTATAGTGCCTAATCACAAAATGAATAAAAATCA
1 AATATCATTTATCCTAATGAGAAGAATGTATTTATAGTGCCTAATAACAAAATGAATGAAGATCA
* *
136385 TTACTAGAATTCATGTTTGTCTCATTTGAGGCATGAACATAGAC-TTACAAAAATTGGTTGTAAA
66 TTACTAGAATTCATGTTTGTCTCATTTGAGGCATGAACATAGACTTTACAAAAATTGGTTGGAAG
* *
136449 AAAGCCTTTCTTGCAAAACTAAAGCTTCAATATCGTGTATCCTTATGAGAATACTATGTTTATGG
131 AAAGCCTTTCTTGCAAAACCAAAGCTTCAATATCGTGTATCCTTATGAGAAAACTATGTTTATGG
*** * * * *
136514 CATTTAATCCTGAAAAGAATGGAGATTTGTAAAACGATTCATGTTTGTCTTATTTAAGAGACAAA
196 CGCCTAATCCTGAAAAGAATGGGGATTAGTATAACTATTCATGTTTGTCTTATTTAAGAGACAAA
* * * *
136579 CTCTTTGATTCTATCAAAAATGGTGGAAAGAAAAACTATTCTTACGACACCAAAGCATCAATGAC
261 --CTTTGATTCTATAAAAAACGGTGGAAAGAAAAACTTTTCTTGCGACACCAAAGCATCAATGAC
* * *
136644 ATGTATCCTAATCAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGATTGTTACAA
324 ATGTATCCTAATAAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTACGA
* * * * * *
136709 GAATCGATGCTTATCTTATTTGAGGGATGAACTTTGATTTTAAGAAAAATAGGGCCACGAAAAGA
389 GAATCGATGCTTGTCATATTTAAGGGATGAATTTTGATTTTAAGAAAAATAGGGCAAAGAAAAGA
* * * **
136774 TTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTATTGAGAAGAATGTGTTTATAGTGTTT
454 TTTTCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCAT
* * * * * * *
136839 AATAACAAAATAAATGAAAATCATCACTAGAATCCACGAATGACCTATTTGAGGCACAAACTTAC
519 AATCACAAAATGAATGAAGATCATCACTAGAATCCATG-ATTACCTATTTGAGGCACAAATTTAG
* * * * * *
136904 ACTTTACGAAAATTGGTGGGAAGAAAGCCTTTCCTT-CGAAGCCAAAGCATTAATATTGTCTATC
583 ACTTTACAAAAATTGGTGGGAAGAAAGCCTTT-CTTACGAAACCAAAGCGTCAATATCGTGTATC
* * * * * * *
136968 CTAAGGAGAAGATTATGTTTAGGGTGCCTAATCCTTAGAAGAATAGAGATTAGTGTGACTATTCA
647 CT-ATGAGAAGACTATGTTTATGGTGCCTAAT-CTTAAAAGAATGGGGATTAGTATGACTATTCA
** *
137033 TGTTTGTCTTATTTAAGAGACAAACTTTGATTCTAAAAAAAACGGTGGAAAAAAAAGCTTTTCTT
710 TGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGTGG-AAAAAAAGCTTTTCTT
* * * *
137098 CCAG-CACCAAAGCATCAAGGTCATGTATCCTAATGAAGGAAATGTGTTTTTGGTTCCCAATCTT
774 -GAGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCAAATCTT
* * * * * *
137162 GAAAAGAATGGAGATTATAATGAAAATTGATGCTTGTCATATTTAAGGGATGAATTTTGA-TTTT
838 GAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCATATTTAAGGGATGAATTTTGATTTTT
*
137226 AGGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATC
903 A-GGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATC
* * * * * *
137273 AATATCATTTATCTTGATGAGGAA-TATGTATTTATAGTGCCTAATCACAAAATGATTGAATATC
1 AATATCATTTATCCTAATGA-GAAGAATGTATTTATAGTGCCTAATAACAAAATGAATGAAGATC
** * * ** * *
137337 ATTACTAGAATGAATGTTTGTCTTATTTGAGGTATGAATTTATATTTTACAAAAATTGGTTGGAA
65 ATTACTAGAATTCATGTTTGTCTCATTTGAGGCATGAACATAGACTTTACAAAAATTGGTTGGAA
** * *
137402 GAAAGCCTTTCTTGTGAAACCAAAG-TGTCAATATCGTGTATCCTTATGAGAAAACTCTGTTTGT
130 GAAAGCCTTTCTTGCAAAACCAAAGCT-TCAATATCGTGTATCCTTATGAGAAAACTATGTTTAT
* *
137466 GGTGCTTAATCCTGAAAAGAATGGGG-TTAGTATAACTATTCATGTTTGTCTTATTTAAGAGACA
194 GGCGCCTAATCCTGAAAAGAATGGGGATTAGTATAACTATTCATGTTTGTCTTATTTAAGAGACA
* *
137530 AACTTTGATTCTATAAAAAACGGT-GAAA-AAAAATCTTTTCTTGCAACACCAAAGCATCAATGT
259 AACTTTGATTCTATAAAAAACGGTGGAAAGAAAAA-CTTTTCTTGCGACACCAAAGCATCAATGA
* * * * **
137593 CATGTATCCTAATGAAGGG-ATGTGTT-TTCGGTTCCCAATCTCGAGAGGAATGGAGACTGTTTT
323 CATGTATCCTAATAAAGGGAATGTGTTCTT-GGTTCCCAATCTTGAAAAGAATGGAGACTGTTAC
* *
137656 GAGAATCGATGCTTGTCATATTTAAGGGATGAATTTTGATTTTAAGGAAAATAAGGCAAAGAAAA
387 GAGAATCGATGCTTGTCATATTTAAGGGATGAATTTTGATTTTAAGAAAAATAGGGCAAAGAAAA
* * * * **
137721 GATTTTCATGTAAAAGAAAATCATCAATCTTAGTTATCCTAATGAGGAGAAACTGTTTATAGTGC
452 GATTTTCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGC
* * * ** * * *
137786 CTAACCACAAAATGAATGAAGATCATGACTAGAATTTATGTTTATCTCATTTGAGGCACGAATTT
517 ATAATCACAAAATGAATGAAGATCATCACTAGAATCCATGATTACCT-ATTTGAGGCACAAATTT
* * * * * * *
137851 GGACTTTACAAAAATTGGCGAGAA-AAGGTCCTTTTTTACAAAACCAAAGCGTCAATGTCGTGTA
581 AGACTTTACAAAAATTGGTGGGAAGAAAG-CCTTTCTTACGAAACCAAAGCGTCAATATCGTGTA
* *
137915 TCCCTATGAGAAGACAATGCTTATGGTGCCTAATCTTGAAAAGAATGGGGATTAGTATGACTATT
645 T-CCTATGAGAAGACTATGTTTATGGTGCCTAATCTT-AAAAGAATGGGGATTAGTATGACTATT
*
137980 CATG--T-TCTTATTTAAGAGACATACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTC
708 CATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAA-AAAAGCTTTTC
* * * * * *
138042 TTGCGACATCAAAGCATCAATGTCATGTATCATAAAGAAGGGAATGTGTTTTTGGTT-TAAATCA
772 TTGAGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCAAATCT
* * * * *
138106 TGAAAAGAGTGGAGACTGTTACGAGAA-CTTATGCTTGTCCTTTTTAAGAGATGAATTTTGATTT
837 TGAAAAGAATGGAGACTGTTACGAGAATC-GATGCTTGTCATATTTAAGGGATGAATTTTGATTT
*
138170 TAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATC
901 TTAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATC
138218 AATATCATTTATCCTAATGA-AGAGAATGTATTTATAGTGCCTAATAACAAAATGAATGAAGATC
1 AATATCATTTATCCTAATGAGA-AGAATGTATTTATAGTGCCTAATAACAAAATGAATGAAGATC
* * *** * * *
138282 ATTACTAGAATCCATGTTTGCCTCATTTGAGGCGCAAACTTAGACTTTACAAAAATTGGCTAGAA
65 ATTACTAGAATTCATGTTTGTCTCATTTGAGGCATGAACATAGACTTTACAAAAATTGGTTGGAA
* ** * *
138347 GAAAGGCTTTCTTGCAAATTCAAAGCGTT-AATATCGTGTATCCTAATGAGAAGACTATGTTTAT
130 GAAAGCCTTTCTTGCAAAACCAAAGC-TTCAATATCGTGTATCCTTATGAGAAAACTATGTTTAT
** * *
138411 GTTGCCTAATCCTGATAAGAATGGGGATTAGTATGACTAGTT-ATGTTTGTCTTATTTAAGAGAC
194 GGCGCCTAATCCTGAAAAGAATGGGGATTAGTATAACTA-TTCATGTTTGTCTTATTTAAGAGAC
* * * *
138475 TAACTTTGATTCTATAAAAAACGGTGG-AATAAAAGCTTTTCTTGCGACACCATAGCATCAATGT
258 AAACTTTGATTCTATAAAAAACGGTGGAAAGAAAAACTTTTCTTGCGACACCAAAGCATCAATG-
* * * * * *
138539 A-ATGTATCCTAATAAAGAGAATGTGTTTTTGGTTACTAATCTTGAAAATAATGGAGACTGTTAT
322 ACATGTATCCTAATAAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTAC
* * *
138603 GAGAATCGATACTTGTCATAATTAAGGGATTAATTTTGATTTTAATG-AAAATAGGGCAAAGAAA
387 GAGAATCGATGCTTGTCATATTTAAGGGATGAATTTTGATTTTAA-GAAAAATAGGGCAAAGAAA
* *
138667 ATATTTTCATGCAAATGAAAATCATCAATATCATTT
451 AGATTTTCATGCAAAAGAAAATCATCAATATCATTT
138703 TGAAGCATGA
Statistics
Matches: 2028, Mismatches: 313, Indels: 89
0.83 0.13 0.04
Matches are distributed among these distances:
943 1 0.00
944 1 0.00
945 281 0.14
946 203 0.10
947 131 0.06
948 17 0.01
949 292 0.14
950 51 0.03
951 148 0.07
952 105 0.05
953 686 0.34
954 112 0.06
ACGTcount: A:0.37, C:0.13, G:0.18, T:0.32
Consensus pattern (948 bp):
AATATCATTTATCCTAATGAGAAGAATGTATTTATAGTGCCTAATAACAAAATGAATGAAGATCA
TTACTAGAATTCATGTTTGTCTCATTTGAGGCATGAACATAGACTTTACAAAAATTGGTTGGAAG
AAAGCCTTTCTTGCAAAACCAAAGCTTCAATATCGTGTATCCTTATGAGAAAACTATGTTTATGG
CGCCTAATCCTGAAAAGAATGGGGATTAGTATAACTATTCATGTTTGTCTTATTTAAGAGACAAA
CTTTGATTCTATAAAAAACGGTGGAAAGAAAAACTTTTCTTGCGACACCAAAGCATCAATGACAT
GTATCCTAATAAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGA
ATCGATGCTTGTCATATTTAAGGGATGAATTTTGATTTTAAGAAAAATAGGGCAAAGAAAAGATT
TTCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCATAA
TCACAAAATGAATGAAGATCATCACTAGAATCCATGATTACCTATTTGAGGCACAAATTTAGACT
TTACAAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAACCAAAGCGTCAATATCGTGTATCCTAT
GAGAAGACTATGTTTATGGTGCCTAATCTTAAAAGAATGGGGATTAGTATGACTATTCATGTTTG
TCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAAAAAGCTTTTCTTGAGACAC
CAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCAAATCTTGAAAAGAA
TGGAGACTGTTACGAGAATCGATGCTTGTCATATTTAAGGGATGAATTTTGATTTTTAGGAAAAT
AGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATC
Found at i:139084 original size:394 final size:394
Alignment explanation
Indices: 138348--139096 Score: 1155
Period size: 394 Copynumber: 1.9 Consensus size: 394
138338 TGGCTAGAAG
* * * *
138348 AAAGGCTTTCTTGCAAATTCAAAGCGTTAATATCGTGTATCCTAATGAGAAGACTATGTTTATGT
1 AAAGCCTTTCTTGCAAATTCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGG
138413 TGCCTAATCCTGATAAGAATGGGGATTAGTATGACTAGTTATGTTTGTCTTATTTAAGAGACTAA
66 TGCCTAATCCTGATAAGAATGGGGATTAGTATGACTAGTTATGTTTGTCTTATTTAAGAGACTAA
* * * * *
138478 CTTTGATTCTATAAAAAACGGTGGAATAAAAGCTTTTCTTGCGACACCATAGCATCAATGTAATG
131 CTTTGATTCTATAAAAAACAGTGAAATAAAAGCTTTTCTTACGACACCAAACCATCAATGTAATG
* *
138543 TATCCTAATAAAGAGAATGTGTTTTTGGTTACTAATCTTGAAAATAATGGAGACTGTTATGAGAA
196 TATCCTAATAAAGAGAATGTGTTTTTGGTTACCAATCTTGAAAATAATGGAGACTGTTATAAGAA
* * * *
138608 TCGATACTTGTCATAATTAAGGGATTAATTTTGATTTTAATGAAAATAGGGCAAAGAAAATATTT
261 TCGATACTTGTCATAATTAAGGGATGAATTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTT
*
138673 TCATGCAAATGAAAATCATCAATATCATTTTGAAGCATGAAGTTTGACTTTACAAAACTTAGAGG
326 TCATGCAAATAAAAATCATCAATATCATTTTGAAGCATGAAGTTTGACTTTACAAAACTTAGAGG
138738 GGAA
391 GGAA
* * *
138742 AAAGCCTTTCTTGCGAATTCAAAGCATCAATATTGTGTATCTTAATGAGAAGACTATGTTTATGG
1 AAAGCCTTTCTTGCAAATTCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGG
*
138807 TGCCTAATCCTGGTAAGAATGGGGATTAGTATGACTA-TTAATGTTTGTCTTATTTAAG-GCACT
66 TGCCTAATCCTGATAAGAATGGGGATTAGTATGACTAGTT-ATGTTTGTCTTATTTAAGAG-ACT
* * *
138870 AACTTTGATTCTATCAAAAATAGTGAAATGAAAAGCTTTTCTTACGACACCAAACCATCAATGTC
129 AACTTTGATTCTATAAAAAACAGTGAAAT-AAAAGCTTTTCTTACGACACCAAACCATCAATGTA
* * * *
138935 ATTTATCCTATTAAAGGGAATGTGTTTTTGGTTCCCAATCTTGAAAATAATGGAGACTGTTATAA
193 ATGTATCCTAATAAAGAGAATGTGTTTTTGGTTACCAATCTTGAAAATAATGGAGACTGTTATAA
* * *
139000 GAATCGATGCTTGTCATATTTAAGGGATGAATTTTGATTTTGAGGAAAATAAGGCACAA-AAAAG
258 GAATCGATACTTGTCATAATTAAGGGATGAATTTTGATTTTAAGGAAAATAAGGCA-AAGAAAAG
*
139064 ATTTTTATGCAAA-AAAAATCATCAATATCATTT
322 ATTTTCATGCAAATAAAAATCATCAATATCATTT
139097 ATCCAAATGA
Statistics
Matches: 320, Mismatches: 31, Indels: 8
0.89 0.09 0.02
Matches are distributed among these distances:
393 3 0.01
394 159 0.50
395 156 0.49
396 2 0.01
ACGTcount: A:0.36, C:0.12, G:0.18, T:0.34
Consensus pattern (394 bp):
AAAGCCTTTCTTGCAAATTCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGG
TGCCTAATCCTGATAAGAATGGGGATTAGTATGACTAGTTATGTTTGTCTTATTTAAGAGACTAA
CTTTGATTCTATAAAAAACAGTGAAATAAAAGCTTTTCTTACGACACCAAACCATCAATGTAATG
TATCCTAATAAAGAGAATGTGTTTTTGGTTACCAATCTTGAAAATAATGGAGACTGTTATAAGAA
TCGATACTTGTCATAATTAAGGGATGAATTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTT
TCATGCAAATAAAAATCATCAATATCATTTTGAAGCATGAAGTTTGACTTTACAAAACTTAGAGG
GGAA
Found at i:139632 original size:474 final size:473
Alignment explanation
Indices: 138718--144063 Score: 5621
Period size: 474 Copynumber: 11.4 Consensus size: 473
138708 CATGAAGTTT
* * ** **
138718 GACTTTACAAAACTTAGAG-GGGAA-AAAGCCTTTCTTGCGAATTCAAAGCATCAATATTGTGTA
1 GACTTTACAAAAATT-G-GTGGGAAGAAAGCCTTTCTTGCAAAACCAAAGCATCAATATCATGTA
* **
138781 TCTTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGGTAAGAATGGGGATTAGTATGACTATT
64 TCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATT
* * * **
138846 AATGTTTGTCTTATTTAAGG-CACTAACTTTGATTCTATCAAAAATAGT-GAAATGAAAAGCTTT
129 CATGTTTGTCTTATTT-AGGAGACAAACTTTGATTCTATCAAAAACGGTGGAAA-GAAAAGCTTT
* * * *
138909 TCTTACGACACCAAACCATCAATGTCATTTATCCTATTAAAGGGAATGTGTTTTTGGTTCCCAAT
192 TCTTACGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAAT
* ** * *
138974 CTTGAAAATAATGGAGACTGTTATAAGAATCGATGCTTGTCATATTTAAGGGATGAATTTTGATT
257 CTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCATGTCTTATTTAA-GGATGAATTTTGATT
* * * *
139039 TTGAGGAAAATAAGGCACAA-AAAAGATTTTTATGCAAAA-AAAATCATCAATATCATTTATCCA
321 TTAAGGAAAATAGGGCA-AAGAAAAG-TTTTCATGCAAAAGAAAATCATCAATATCATTTATCCT
* * *
139102 AATGAGGAGAATGTGTGTATAGTGTCTAATCACAAAATGAATGTAGATCATTACTAGAATCCATG
384 AATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATG
* * ***
139167 TTTGTCTTATTTGTGGCGCAAACATA
449 TTTGTCTCATTTGAGGCATGAAC-TA
* * * ** **
139193 GACTTTTC-AAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAAGCAAAGTGTCAATATTGTGTATC
1 GACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCAAAACCAAAGCATCAATATCATGTATC
* * * * * * * *
139257 CTTATCAGAAGACTATGTTTATGGCGGCTAATCTTGAAAAGAATGGAGATTAGTATGATTGTTCA
66 CTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCA
* * * *
139322 TGTTTATCTTATTTAGGAGACACACTTTGATTTTATCTAAAACGGTGGAAAGAAAAGCTTTTCTT
131 TGTTTGTCTTATTTAGGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTT
* * ** ** * ** * * * *
139387 GCAACACCAAAGTGTCAATACCATGTATCCTAATAAAGATAATGTGTTCTTAGTTCCTAATCTTA
196 ACGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCTTG
* *
139452 AAAAGAATGGAGACTGTCACGAGAATCAATGCATGTCTTATTTAAGCGATGAATTTTGA-TTTAA
261 AAAAGAATGGAGACTGTTACGAGAATCGATGCATGTCTTATTTAAG-GATGAATTTTGATTTTAA
* ** * * * *
139516 GGAAAGTAACGCAATGAAAAGTTTTCCATGCAAAAGAAAACCATTAATGTCATTTATCCTAATGA
325 GGAAAATAGGGCAAAGAAAAGTTTT-CATGCAAAAGAAAATCATCAATATCATTTATCCTAATGA
* * *
139581 GGAGAAAGTGTTTATAGTAG-CTAATCACAAAATGAATGAAGATCCTTACTAGAATCAATGTTTG
389 GGAGAATGTGTTTATAGT-GCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTG
*
139645 TCTCATTTGAGGCATGAACTT
453 TCTCATTTGAGGCATGAACTA
* * * *
139666 GTACTTTACAAAAATTGGTGGGAAAAAAACCTTTCTTGCAAAACCAAAGCATTAATATCATGTGT
1 G-ACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCAAAACCAAAGCATCAATATCATGTAT
* *
139731 CCTAATGAGAAGACTATGTTTATGGTGCCTAATCCT-AAATAGAATGGGGATTACTATGAGTATT
65 CCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAA-AGAATGGGGATTAGTATGACTATT
* * * * * * * *** * * *
139795 CATGTTTGTCTTTTTTACGAGGCAAAATTTGATTTTATCAGAAATGGCAAAAAAAAAAGCTATTA
129 CATGTTTGTCTTATTTAGGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTC
** * * * * * *
139860 TTGTGATA-TAAAGCATCAATGTCAGGTATCGTAATGAAGAGAATGTGTTTTTGGTTCACAATCT
194 TTACGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCT
* * * * *
139924 TGAAAAGAATTGAGACTGTTACGAGAATCAATG-ATTGCCTTATTTAAGAGATAAACTTTGATTT
259 TGAAAAGAATGGAGACTGTTACGAGAATCGATGCA-TGTCTTATTTAAG-GATGAATTTTGATTT
* * * *
139988 TAAGG-----A--G--AAG---A-TTTT-TTGCAAAAGAATACCATCAACATCATTTATCCTAAT
322 TAAGGAAAATAGGGCAAAGAAAAGTTTTCATGCAAAAGAAAATCATCAATATCATTTATCCTAAT
* * * * * *
140039 GAGGAAAATGTGATTGTAGTG-CTCAATCAAAAAATGAATGAAGCTCATTACTAGATTCCATGTT
387 GAGGAGAATGTGTTTATAGTGCCT-AATCACAAAATGAATGAAGATCATTACTAGAATCCATGTT
* * * * *
140103 TGACTTATTTAAGACAGGAACTTA
451 TGTCTCATTTGAGGCATGAAC-TA
* * ** * * *
140127 AACTTTACAAAAATTGGTGGGAAGAAAGGCTTTCTT-CTGTAGCTAAAGCATCAATATCATCTAT
1 GACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGC-AAAACCAAAGCATCAATATCATGTAT
* * * **
140191 CCTAAT-------C----------GT--CT-A---T----AG-ATGGAGA-TGGCTATGACAACC
65 CCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAG-TATGACTATT
* ** * * * *
140227 CATGGTTGTCTCCTTTGAGG-GACGAACTTTGATTCTATCAACAATGGTAGAAAGAAAAGCTTTT
129 CATGTTTGTCTTATTT-AGGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTT
* * * *
140291 CTTTCAACCCCAAAGCATCAATGTCATGTATCCTAATAAAGGGAATGTGTTTTTGGTTCCCAATC
193 CTTACGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATC
* * * *
140356 ATGAAAATAATGGAGACTGTCCTA--AGAATCGATACATGCCTTATTTAAAGGATGAATTTTGAT
258 TTGAAAAGAATGGAGACTGT--TACGAGAATCGATGCATGTCTTATTT-AAGGATGAATTTTGAT
* *
140419 TTTAAGGAAAATAGGGCAAAGAAAAGTTTCCATGC-AAA-ACAATCATCAA-ATCATTTATCCTA
320 TTTAAGGAAAATAGGGCAAAGAAAAGTTTTCATGCAAAAGAAAATCATCAATATCATTTATCCTA
* * * *
140481 AAGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATAAATGAAGATCCTTACTAGAATTCATGT
385 ATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGT
* *
140546 TTGTCTCGTTTGAGGCATGAACTT
450 TTGTCTCATTTGAGGCATGAACTA
* * * *
140570 GCACTTTACAAAAATTGGTGGAAAAAAATCCTTTCTTGTAAAACCAAAGCATCAATATCATGTAT
1 G-ACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCAAAACCAAAGCATCAATATCATGTAT
* * * * *
140635 CCTAATGGGAAAACAATGTTTATGGGGCCTAATCCT-AAAACGAATTGGGATTAGTATGACTATT
65 CCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAA-GAATGGGGATTAGTATGACTATT
** ** * * * * * * * *
140699 TTTGTTTGTCTTATTTAATAGTCAAACTTTGATTCCATAAAAAATGCTCGAAAGAAAAGCTATTA
129 CATGTTTGTCTTATTTAGGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTC
* * * ** * *
140764 TTATGACACTAAAGCATCAATGTCATGTATCTTAATGAAGGGAATGTGCCTTTGGTTCCTAATTT
194 TTACGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCT
* * * * *
140829 TGAAAAGAATGGAGATTGTTACAAGAATCAATGCATGCCTTATTTAAGGGATGAACTTTGATTTT
259 TGAAAAGAATGGAGACTGTTACGAGAATCGATGCATGTCTTATTTAA-GGATGAATTTTGATTTT
** * * * *
140894 TGGGAAAATAGGGCAAAGAAAATGTTTCCATGCAAAAGAAAATCATAAATGTCAGTTATCCTAAT
323 AAGGAAAATAGGGCAAAGAAAA-GTTTTCATGCAAAAGAAAATCATCAATATCATTTATCCTAAT
* * * *
140959 GAGGACAAAGTGTTTACT-GTGCCTAATCACAAAATGAATGAAGATCATCACTAGAATCTATGTT
387 GAGGAGAATGTGTTTA-TAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTT
* * *
141023 TGTTTAATTTGAGGCACGAACATA
451 TGTCTCATTTGAGGCATGAAC-TA
* *
141047 GACTTTAAAAAAATTGGTGAGAAGAAAGCCTTTCTTGCAAAACCAAAGCATCAATATCATGTATC
1 GACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCAAAACCAAAGCATCAATATCATGTATC
* * * * * * * *
141112 CTTACGAGAAGACTACGTTTGTGGTGCCTAATCTTGAAAAGAATTGGGACTAGTATGACTATTCG
66 CTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCA
* * * *
141177 TGTTTGTCTTATTTAAGAGAC-AACTTTGATTCTATAAAAAATGGTGGAAAGAGAAGCTTTTCTT
131 TGTTTGTCTTATTTAGGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTT
* * *
141241 GCGACACCAAAGCATCAAT-TACATGTATCCTAATAAAGGGAATGCGTTTTTGGTTCCCAATCTT
196 ACGACACCAAAGCATCAATGT-CATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCTT
* * * * * * * *
141305 GAAAAGAATGAAGACTGTTACAAGAATC-AGTGCTTGCCATATTTAAACGATGAACTTTAATTTT
260 GAAAAGAATGGAGACTGTTACGAGAATCGA-TGCATGTCTTATTT-AAGGATGAATTTTGATTTT
* * * *
141369 AAGGAAAATAGGGCAAAGAAAAGATTTTGATGCAAAAGAATACCATCAACATCATTTATCCTAAT
323 AAGGAAAATAGGGCAAAGAAAAG-TTTTCATGCAAAAGAAAATCATCAATATCATTTATCCTAAT
* * * *
141434 GAGGAAAATGTGTTTATAGTGCCTAATCCCAAAATGAATGAAGATTATTATTAGAATCCATGTTT
387 GAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTT
* * * *
141499 GACACATTTGAGGCACGTACTTA
452 GTCTCATTTGAGGCATGAAC-TA
* * * * * *
141522 CACTTTAAAAAAATTGGTAGGAAGAAAGCCTTTCTTGCGAAACCAAAGCTTCAATATCGTGTATC
1 GACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCAAAACCAAAGCATCAATATCATGTATC
* * * *
141587 CTTATGAGAA-ACCTATGTTTATGATGCCTAATCCTGAAAAAAAATGGGGATTAGTATGACGATT
66 CTAATGAGAAGA-CTATGTTTATGGTGCCTAATCCTG-AAAAGAATGGGGATTAGTATGACTATT
* * ** *
141651 AATGTTTGTTTTAAAT-GAGAGACAAACTTTGATTCTATCAAAAACAGTGGAAAGAAAAGCTTTT
129 CATGTTTGTCTTATTTAG-GAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTT
* * *
141715 CTTACGACACGAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTGCCCATTC
193 CTTACGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATC
* * * * * * *
141780 TTGAAAAGAATAGAGATTATCATGAGGATCGATGCATGTCTTATTTAAGGGATAAATTTTGATTT
258 TTGAAAAGAATGGAGACTGTTACGAGAATCGATGCATGTCTTATTTAA-GGATGAATTTTGATTT
* * *
141845 TAAGGAAAATAGGGCAAAGAAAAGTTTTCATACAAAAGAAAATCAACAATGTCATTTATCCTAAT
322 TAAGGAAAATAGGGCAAAGAAAAGTTTTCATGCAAAAGAAAATCATCAATATCATTTATCCTAAT
* * * * *
141910 AAGGAGAATGTGTTTATAGTGCCAAATTACAAAATGAATGAAGATCTTTACTGGAATCCATGTTT
387 GAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTT
** *
141975 GTCTTGTTTGAGGCATGAACTT
452 GTCTCATTTGAGGCATGAACTA
* *
141997 GCACCTTACAAAAATTGGTGGGAAAGAAGGAAGCTTTTCTTGCAAAACCAAAGCATCAATATCAT
1 G-ACTTTACAAAAATTGGTGGG-AAG-A--AAGCCTTTCTTGCAAAACCAAAGCATCAATATCAT
* * * *
142062 GTATCATAATGAGAAGACTATGTTTTTGGTGCCTAATCCTGAAAAGATTGGGGATTAGTATGAGT
61 GTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACT
* * * *
142127 ATTCATGTTTGTATTATTTA-AAGATAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAACCTT
126 ATTCATGTTTGTCTTATTTAGGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTT
* ** * * * *
142191 TTTTTGTGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGCTTTTGGTGCTCAT
191 TTCTTACGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAA
* * * * * *
142256 TCTTGAAAAGAATAGAAACTGTCATGAGAATCAATGCATGTCTTATTTAAGGAATAAATTTTGAT
256 TCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCATGTCTTATTTAAGG-ATGAATTTTGAT
* * * * * *
142321 TTTACGAAAAATAGGACAAAGAAAATTTTTCATGCAAAAGAAAATCCTCAATATCATTTACCCTA
320 TTTAAGGAAAATAGGGCAAAGAAAAGTTTTCATGCAAAAGAAAATCATCAATATCATTTATCCTA
* * * *
142386 ATAAAGAGAATGTGTTTATAGTGCCAAATCACAAAATGAATGAAGATCTTTACTAGAATCCATGT
385 ATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGT
* *
142451 TTGTCTCGTTTGAGGCATGAACTT
450 TTGTCTCATTTGAGGCATGAACTA
* *
142475 GAACTTTACAAAAATTGGTGGGCAA-TAAGCTTTTCTTGCAAAACCAAAGCATCAATATCATGTA
1 G-ACTTTACAAAAATTGGTGGG-AAGAAAGCCTTTCTTGCAAAACCAAAGCATCAATATCATGTA
* ** * * * ** *
142539 TCATAATGAGAAGACCGTGTTTTTGGTGCCTAATCCTAAAAAGATTGGGGATTAGTATGTGTGTT
64 TCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATT
* * * *
142604 CATGTTTATCTTATTTA-AAGACAAACCTTGATTCTATCAAAAACGATGGAAA-AAAA-CTTTTT
129 CATGTTTGTCTTATTTAGGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGC-TTTT
* * * * * *
142666 CTTACGACACCAAAGCATCAATGTTATGTATCTTAATTAAGGGAATGTATTGTCT-GTTCCCAGT
193 CTTACGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTT-TTTGGTTCCCAAT
* * ** *
142730 CTTGAAAAGAATGGAGACTATTATGAGAATCGATGTTTGTCATATTTAAGGGATGAATTTTGATT
257 CTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCATGTCTTATTTAA-GGATGAATTTTGATT
**
142795 TTAA-GAAAATAGGGCAAAGAAAAGAATTTT-ATGCAAAAGAAAAT-ATTCAATATTGTTTATCC
321 TTAAGGAAAATAGGGCAAAGAAAAG--TTTTCATGCAAAAGAAAATCA-TCAATATCATTTATCC
* * *
142857 TAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAAATGAATGAATATCAATACTAAAATCCA
383 TAATGAGGAGAATGTGTTTATAGTGCCTAATCAC-AAAATGAATGAAGATCATTACTAGAATCCA
* * * * *
142922 TGTTTATGTCACTTGAGACACGAACATA
447 TGTTTGTCTCATTTGAGGCATGAAC-TA
* * * **
142950 GACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAACAAAAGTGTCAATATCATGTATC
1 GACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCAAAACCAAAGCATCAATATCATGTATC
* * * *
143015 CTTATGAGAAGACTATGTTTATGG-GCTTGATCCTGAAAAGAATGGAGATTAGTATGACTATTCA
66 CTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCA
* * * * * *
143079 TTTTTATCTTATTTAGGAGACAAACTTTGATTTTATCTAAAACGGTGGAAA-AAAGGTTTTTCTT
131 TGTTTGTCTTATTTAGGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTT
* * * * *
143143 ACGACTCTAAAGCATCAATGTCATGTATCCTAATGACGGGAATGTGTTTTTGGTGCCCATTCTTG
196 ACGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCTTG
* * * * *
143208 -AAAGAATAGAGACTGTCATGAGAATCGATGCATGTTTTATTTAAAGGATAAATTTTGATTTTAA
261 AAAAGAATGGAGACTGTTACGAGAATCGATGCATGTCTTATTT-AAGGATGAATTTTGATTTTAA
*
143272 GGAAAATAGGGCAAAGAAAA-TATTTCATACAAAAGAAAATCATCAATATCATTTAT-CTGAATG
325 GGAAAATAGGGCAAAGAAAAGT-TTTCATGCAAAAGAAAATCATCAATATCATTTATCCT-AATG
** * * * *
143335 AGGAGAATGTACTTATAGTGCCCAATCACAAAATGAATGACGATCTTTACTAAAATCCATGTTTG
388 AGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTG
*
143400 TCTCATTTGAGGCATGAATTTA
453 TCTCATTTGAGGCATGAA-CTA
* * * * *
143422 GGCATTACAAAAATTGGTGGGAAAAAAACCTTTCTTGCAAAACCAAAGCATCAATATAATGTATC
1 GACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCAAAACCAAAGCATCAATATCATGTATC
* * * ** * *
143487 CTAATCAAAAGACTATATTTATGGTGCCTAATCCAAAAAAGAGTGGGGATTAGTATGAGTATTCA
66 CTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCA
* * *
143552 TGTTTGTCTTATTTAAGAAACAAACTTTGATTCTATCAAAAACGGTGGAAGGAAAAGCTTTTCTT
131 TGTTTGTCTTATTTAGGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTT
** * *
143617 ACGTTAGCAAAGCATCAATGTCATGTATCCTAATGAAGAGAATGTGTTTTTGGTTCCCAATCTTG
196 ACGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCTTG
* * ** *
143682 AAAAGAATGGAGACTGTTACGAGAATCGATG-ATTATCTTTTTTGTGGTATTAATTTTGATTTTA
261 AAAAGAATGGAGACTGTTACGAGAATCGATGCA-TGTCTTATTTAAGG-ATGAATTTTGATTTTA
* *
143746 AGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAACA-AAAATCATCAAAATCATTTATCCTAAT
324 AGGAAAATAGGGCAAAGAAAAG-TTTTCATGCAAA-AGAAAATCATCAATATCATTTATCCTAAT
** * * *
143810 GAGGAGAATGTACTTATAGTGCCTAATCACAAAATGAATGACGATCTTTACTAAAATCCATGTTT
387 GAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTT
143875 GTCTCATTTGAGGCATGAACTTA
452 GTCTCATTTGAGGCATGAAC-TA
* * *
143898 GACTTTACAAAAATTGGTGGGAAAAAAACCTTTCTTGCAAAACCAGAA-CATCAATATCGTGTAT
1 GACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCAAAACCA-AAGCATCAATATCATGTAT
* * * * * * *
143962 CCTAATGAGAAGGCTACGTTTATGGTGCTTAATCTTGAAAAAAATGGGGATTTGTTTG-CGTATT
65 CCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAC-TATT
* * * *
144026 CCTGCTTGTCTTATTTAAGAAACAAACTTTGATTCTAT
129 CATGTTTGTCTTATTTAGGAGACAAACTTTGATTCTAT
144064 GGAAAATGGT
Statistics
Matches: 4075, Mismatches: 664, Indels: 263
0.81 0.13 0.05
Matches are distributed among these distances:
431 1 0.00
432 62 0.02
433 106 0.03
434 4 0.00
435 2 0.00
437 1 0.00
438 1 0.00
440 2 0.00
441 2 0.00
442 3 0.00
443 3 0.00
444 139 0.03
445 11 0.00
446 6 0.00
447 3 0.00
451 1 0.00
453 1 0.00
459 4 0.00
460 155 0.04
461 2 0.00
462 4 0.00
463 3 0.00
464 1 0.00
466 2 0.00
467 1 0.00
468 1 0.00
470 4 0.00
471 5 0.00
472 336 0.08
473 459 0.11
474 906 0.22
475 608 0.15
476 632 0.16
477 180 0.04
478 322 0.08
479 35 0.01
480 66 0.02
481 1 0.00
ACGTcount: A:0.36, C:0.14, G:0.18, T:0.32
Consensus pattern (473 bp):
GACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCAAAACCAAAGCATCAATATCATGTATC
CTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCA
TGTTTGTCTTATTTAGGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTT
ACGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCTTG
AAAAGAATGGAGACTGTTACGAGAATCGATGCATGTCTTATTTAAGGATGAATTTTGATTTTAAG
GAAAATAGGGCAAAGAAAAGTTTTCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGG
AGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCT
CATTTGAGGCATGAACTA
Found at i:142456 original size:158 final size:156
Alignment explanation
Indices: 141726--143967 Score: 482
Period size: 158 Copynumber: 14.2 Consensus size: 156
141716 TTACGACACG
* * * * * * **
141726 AAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTGCCCATTCTTGAAAAGAAT
1 AAAGCATCAATATCATGTATCCTAATAAAGAGAATGTG-TTTTAGTGCCAAATC-ACAAAAGAAT
* * * **
141791 -AGAGAT-TAT-CATGAGGATCGATGCATGTCTTATTTAAGGGATAAATTTTGATTTTA-AGGAA
64 GA-AGATCTGTAC-TGAGAATCCATGTTTGTCTTATTTAA-GGATAAATTTTGATTTTACA--AA
* * *
141852 AATAGGGCAAAGAAAA-GTTTTCATACAAAAGA
124 AATAGGGCAAAGAAAACTTTTTCATGCAAAACA
* * * * * *
141884 AAATCAACAATGTCATTTATCCTAATAAGGAGAATGTGTTTATAGTGCCAAATTACAAAATGAAT
1 AAAGCATCAATATCATGTATCCTAATAAAGAGAATGTGTTT-TAGTGCCAAATCACAAAA-GAAT
* * * * * **
141949 GAAGATCTTTACTG-GAATCCATGTTTGTCTTGTTTGAGGCATGAA-CTTGCACCTTACAAAAAT
64 GAAGATCTGTACTGAGAATCCATGTTTGTCTTATTTAAGG-ATAAATTTTG-ATTTTACAAAAA-
* * * *
142012 TGGTGGGAAAGAAGGAAGC-TTTTCTTGCAAAACC
126 TAG-GGCAAAGAA--AA-CTTTTTCATGCAAAACA
* ** * *
142046 AAAGCATCAATATCATGTATCATAATGAGAAGACTATGT-TTTTGGTGCCTAATC-CTGAAAAGA
1 AAAGCATCAATATCATGTATCCTAAT-A-AAGAGAATGTGTTTTAGTGCCAAATCAC--AAAAGA
* ** * * * * * *
142109 TTGGGGAT-TAGTA-TGAGTATTCATGTTTGTATTATTTAAAGATAAACTTTGATTCTATCAAAA
62 ATGAAGATCT-GTACTGAGAATCCATGTTTGTCTTATTTAAGGATAAATTTTGATTTTA-CAAAA
* * * ** * *
142172 A-CGGTGGAAAGAAAACCTTTTT-TTGTGACACC
125 ATAGG-GCAAAGAAAA-CTTTTTCATGCAAAACA
* * * * * **
142204 AAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGCTTTTGGTGCTC-ATTCTTGAAAAGAA
1 AAAGCATCAATATCATGTATCCTAATAAAGAGAATGTG-TTTTAGTGC-CAAATC-ACAAAAGAA
* **
142268 TAGAA-A-CTGT-CATGAGAATCAATGCATGTCTTATTTAAGGAATAAATTTTGATTTTACGAAA
63 T-GAAGATCTGTAC-TGAGAATCCATGTTTGTCTTATTTAAGG-ATAAATTTTGATTTTAC-AAA
* *
142330 AATAGGACAAAGAAAA-TTTTTCATGCAAAAGA
124 AATAGGGCAAAGAAAACTTTTTCATGCAAAACA
* * * *
142362 AAATCCTCAATATCATTTACCCTAATAAAGAGAATGTGTTTATAGTGCCAAATCACAAAATGAAT
1 AAAGCATCAATATCATGTATCCTAATAAAGAGAATGTGTTT-TAGTGCCAAATCACAAAA-GAAT
* ** * * * *
142427 GAAGATCTTTACT-AGAATCCATGTTTGTCTCGTTTGAGGCATGAA-CTTGAACTTTACAAAAAT
64 GAAGATCTGTACTGAGAATCCATGTTTGTCTTATTTAAGG-ATAAATTTTG-ATTTTACAAAAA-
* * * * *
142490 TGGTGGGC-AA-TAAGC-TTTTCTTGCAAAACC
126 T--AGGGCAAAGAAAACTTTTTCATGCAAAACA
* * ** * *
142520 AAAGCATCAATATCATGTATCATAAT-GAGAAGACCGTGTTTTTGGTGCCTAATC-CTAAAAAGA
1 AAAGCATCAATATCATGTATCCTAATAAAG-AGAATGTG-TTTTAGTGCCAAATCAC--AAAAGA
* ** * ** * * * * ** *
142583 TTGGGGAT-TAGTA-TGTGTGTTCATGTTTATCTTATTTAAAGACAAACCTTGATTCTATCAAAA
62 ATGAAGATCT-GTACTGAGAATCCATGTTTGTCTTATTTAAGGATAAATTTTGATTTTA-CAAAA
* * * * * * *
142646 ACGATGG-AAA-AAAACTTTTTCTTACGACACC
125 A-TAGGGCAAAGAAAACTTTTTCATGCAAAACA
* * * * * * * * * **
142677 AAAGCATCAATGTTATGTATCTTAATTAAGGGAATGTATTGTCT-GTTCCCAGTCTTGAAAAGAA
1 AAAGCATCAATATCATGTATCCTAATAAAGAGAATGTGTT-T-TAGTGCCAAATC-ACAAAAGAA
* * * * *
142741 TGGAGA-CTATTA-TGAGAATCGATGTTTGTCATATTTAAGGGATGAATTTTGATTTTA-AGAAA
63 TGAAGATCT-GTACTGAGAATCCATGTTTGTCTTATTTAA-GGATAAATTTTGATTTTACA-AAA
** *
142803 ATAGGGCAAAGAAAAGAATTTT-ATGCAAAAGA
125 ATAGGGCAAAGAAAA-CTTTTTCATGCAAAACA
* ** * * * *
142835 AAA-TATTCAATATTGTTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAAATGA
1 AAAGCA-TCAATATCATGTATCCTAATAAAGAGAATGTGTTT-TAGTGCCAAATCAC-AAAA-GA
* ** * * * * * * * ** * *
142899 ATGAATATCAATACT-AAAATCCATGTTTATGTCACTTGA-GACACGAACATAGACTTTACAAAA
62 ATGAAGATCTGTACTGAGAATCCATGTTTGTCTTATTTAAGGATA--AATTTTGATTTTACAAAA
* ** * * * * *
142962 ATTGGTGGGAAGAAAGC-CTTTCTTACGAAACA
125 ATAGG-GCAAAGAAAACTTTTTCATGCAAAACA
** * * * * * ***
142994 AAAGTGTCAATATCATGTATCCTTAT-GAGAAGACTATG-TTTATGGGCTTGATC-CTGAAAAGA
1 AAAGCATCAATATCATGTATCCTAATAAAG-AGAATGTGTTTTA-GTGCCAAATCAC--AAAAGA
* ** * * * * * * *
143056 ATGGAGAT-TAGTA-TGACTATTCATTTTTATCTTATTTAGGAGACAAACTTTGATTTTATCTAA
62 ATGAAGATCT-GTACTGAGAATCCATGTTTGTCTTATTTAAG-GATAAATTTTGATTTTA-CAAA
* * ** * * * ** *
143119 AA-CGGTGGAAA-AAAGGTTTTTCTTACGACTCT
124 AATAGG-GCAAAGAAAACTTTTTCATGCAAAACA
* * * * * * * ***
143151 AAAGCATCAATGTCATGTATCCTAATGACGGGAATGTGTTTTTGGTGCCCATTCTTGAAAGAAT-
1 AAAGCATCAATATCATGTATCCTAATAAAGAGAATGTG-TTTTAGTGCCAAATCACAAAAGAATG
* ** *
143215 AGAGA-CTGT-CATGAGAATCGATGCATGTTTTATTTAAAGGATAAATTTTGATTTTA-AGGAAA
65 A-AGATCTGTAC-TGAGAATCCATGTTTGTCTTATTT-AAGGATAAATTTTGATTTTACA--AAA
* * *
143277 ATAGGGCAAAGAAAA-TATTTCATACAAAAGA
125 ATAGGGCAAAGAAAACTTTTTCATGCAAAACA
* * * * * * *
143308 AAATCATCAATATCATTTAT-CTGAATGAGGAGAATGTACTTATAGTGCCCAATCACAAAATGAA
1 AAAGCATCAATATCATGTATCCT-AATAAAGAGAATGT-GTTTTAGTGCCAAATCACAAAA-GAA
* * * * * * * ***
143372 TGACGATCTTTACT-AAAATCCATGTTTGTCTCATTTGAGGCATGAATTTAGGCATTACAAAAAT
63 TGAAGATCTGTACTGAGAATCCATGTTTGTCTTATTTAAGG-ATAAATTTTGATTTTACAAAAA-
* * * * *
143436 TGGTGGGAAA-AAAAC-CTTTCTTGCAAAACC
126 TAG-GGCAAAGAAAACTTTTTCATGCAAAACA
* * * * * * * *
143466 AAAGCATCAATATAATGTATCCTAATCAAA-AGACTATATTTATGGTGCCTAATCCAAAAAAGAG
1 AAAGCATCAATATCATGTATCCTAAT-AAAGAGAATGTGTTT-TAGTGCCAAAT-CACAAAAGAA
** * * * * * *
143530 TGGGGAT-TAGTA-TGAGTATTCATGTTTGTCTTATTTAAGAAACAAACTTTGATTCTATCAAAA
63 TGAAGATCT-GTACTGAGAATCCATGTTTGTCTTATTTAAG-GATAAATTTTGATTTTA-CAAAA
* * * * * ** *
143593 A-CGGTGGAAGGAAAAGC-TTTTCTTACGTTAGC-
125 ATAGG-GCAAAGAAAA-CTTTTTCATGC-AAAACA
* * * * * **
143625 AAAGCATCAATGTCATGTATCCTAATGAAGAGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAAT
1 AAAGCATCAATATCATGTATCCTAATAAAGAGAATGTG-TTTTAGTGCCAAATC-ACAAAAGAAT
* * * * * ** *
143690 GGAGA-CTGTTAC-GAGAATCGATGATTATCTTTTTTGTGGTATTAATTTTGATTTTA-AGGAAA
64 GAAGATCTG-TACTGAGAATCCATGTTTGTCTTATTTAAGG-ATAAATTTTGATTTTACA--AAA
** *
143752 ATAGGGCAAAGAAAAGATTTCCATGC-AAACAA
125 ATAGGGCAAAGAAAACTTTTTCATGCAAAAC-A
* * * * * * * *
143784 AAATCATCAAAATCATTTATCCTAATGAGGAGAATGTACTTATAGTGCCTAATCACAAAATGAAT
1 AAAGCATCAATATCATGTATCCTAATAAAGAGAATGT-GTTTTAGTGCCAAATCACAAAA-GAAT
* * * * * * * * *
143849 GACGATCTTTACT-AAAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATT
64 GAAGATCTGTACTGAGAATCCATGTTTGTCTTATTTAAGG-ATAAATTTTGATTTTACAAAAA-T
* * * *
143913 GGTGGGAAA-AAAAC-CTTTCTTGCAAAACCA
127 AG-GGCAAAGAAAACTTTTTCATGCAAAA-CA
* *
143943 GAA-CATCAATATCGTGTATCCTAAT
1 AAAGCATCAATATCATGTATCCTAAT
143968 GAGAAGGCTA
Statistics
Matches: 1482, Mismatches: 454, Indels: 296
0.66 0.20 0.13
Matches are distributed among these distances:
156 30 0.02
157 351 0.24
158 577 0.39
159 374 0.25
160 44 0.03
161 13 0.01
162 78 0.05
163 8 0.01
164 7 0.00
ACGTcount: A:0.37, C:0.13, G:0.18, T:0.32
Consensus pattern (156 bp):
AAAGCATCAATATCATGTATCCTAATAAAGAGAATGTGTTTTAGTGCCAAATCACAAAAGAATGA
AGATCTGTACTGAGAATCCATGTTTGTCTTATTTAAGGATAAATTTTGATTTTACAAAAATAGGG
CAAAGAAAACTTTTTCATGCAAAACA
Found at i:145975 original size:318 final size:304
Alignment explanation
Indices: 145120--146042 Score: 794
Period size: 318 Copynumber: 3.0 Consensus size: 304
145110 AGTATTCATG
* *
145120 TTTGTCTTATTTAAAAGAAAAACTTTGATTCTATGAAAAATGGTGGTAAAAATGCCTTTCTTGCA
1 TTTGTCTTATTTAAAGGACAAACTTTGATTCTATGAAAAATGGTGGTAAAAATGCCTTTCTTGCA
* *
145185 AAGCCAAGCCATCAATGTCA-GTATCTCAATAAGGATTTTTGGTGCCCAACCATGAAAA-AAT-A
66 AAGCCAAACCATCAATGTCATGTATCTCAATAAGGATTTTTGGTGCCCAATCATGAAAAGAATGA
* * *
145247 GAGATTATTACCAGAATCTATATTTGTCTAATTTGAGGGATGAACTTTGTTTTATAGGAAAATAA
131 -AGACTATTACAAGAATCTATATTTGTCTAATTTGAGGG-TGAACTTTGATTTATAGGAAAATAA
*
145312 GTCAAAGAAAAGCTTTACTTTTGAAGCCAAAGCATC-A-A--TATTAATGAGGAGAACATGTTTA
194 GTCAAAGAAAAGCTTTACTTTTGAAGCCAAA-CATCAATATCTATTAATGAGGAGAACATATTTA
* * * * *
145373 TGGTCTCAATCATGAAATGGTGGAGATTGTTACAATAATCCAAATCC
258 CGGCCTCAATCATGAAATGATGGAGATGGTTACAACAATCCAAATCC
* * * * * * * ** * *
145420 -ATG--TTATTTGAGGGACAAACTTTGATTTTGTCAAAAATGGCGAAAAGAAAAG-GTTTCCTT-
1 TTTGTCTTATTTAAAGGACAAACTTTGATTCTATGAAAAATGGTGGTAA-AAATGCCTTT-CTTG
* * * * * * * * *
145480 -AAGGCACCAAAGCATCAATGTCATGCATCCTAAAGAAGGGAACATGTTTTTGATACCTAATCTT
64 CAAAG--CCAAACCATCAATGTCATGTAT-CTCAATAA-GG---A--TTTTTGGTGCCCAATCAT
* * * * * * *
145544 GAAAAGAATGTAGACTCTTACAAGAATCTATGTTTATCTCATTTGAGGAATGAACTTTTATTT-T
120 GAAAAGAATGAAGACTATTACAAGAATCTATATTTGTCTAATTTGAGG-GTGAACTTTGATTTAT
** * * **
145608 GAGGAAAATGGGTCAAAGAAAAACTTTTCTTGCGAAGCCAAGACATCAATATCGTGTATCGTAAT
184 -AGGAAAATAAGTCAAAGAAAAGCTTTACTTTTGAAGCCAA-ACATCAATATC---TAT--TAAT
* * *
145673 GAGGAGAACATATTTACGCTGCCT-AATCGCCTG-TA-GATGGAGATGGTTACGACAA-CCTATG
242 GAGGAGAACATATTTACG--GCCTCAAT--CATGAAATGATGGAGATGGTTACAACAATCC-A--
**
145734 GTTGTCTCC
300 ----AATCC
145743 TTTGTCTTATTTAAAGGACAAACTTTGATTCTATGAAAAATGGTGGTAAAAATGCCTTTCTTGCA
1 TTTGTCTTATTTAAAGGACAAACTTTGATTCTATGAAAAATGGTGGTAAAAATGCCTTTCTTGCA
145808 AAGCCAAACCATCAATGTCATGTATCTCAATAAGGATTTTTGGTGCCCAATCATGAAAAGAATGA
66 AAGCCAAACCATCAATGTCATGTATCTCAATAAGGATTTTTGGTGCCCAATCATGAAAAGAATGA
* * * *
145873 AGACTATTACTAGAATCCATATTTGTCTTATTTGAAGGGTGAACTTTGATTTATAGGAAAGTAAG
131 AGACTATTACAAGAATCTATATTTGTCTAATTTG-AGGGTGAACTTTGATTTATAGGAAAATAAG
* * * *
145938 TCAAAGAAAAGCTTTACTTTTGAAGCCAAATCATCAATATC----AATGATGAGAGCATGTTTAT
195 TCAAAGAAAAGCTTTACTTTTGAAGCCAAA-CATCAATATCTATTAATGAGGAGAACATATTTAC
* * * *
145999 GGTCC-CAATCATGAAACGATGGAGTTTGTTACAATAATCCAAAT
259 GG-CCTCAATCATGAAATGATGGAGATGGTTACAACAATCCAAAT
146043 TTATGTTATT
Statistics
Matches: 473, Mismatches: 99, Indels: 100
0.70 0.15 0.15
Matches are distributed among these distances:
296 3 0.01
297 36 0.08
298 22 0.05
299 5 0.01
300 6 0.01
301 2 0.00
302 1 0.00
304 1 0.00
306 22 0.05
307 85 0.18
308 24 0.05
309 20 0.04
314 3 0.01
316 22 0.05
317 21 0.04
318 111 0.23
319 7 0.01
320 1 0.00
323 5 0.01
324 8 0.02
325 27 0.06
326 38 0.08
327 3 0.01
ACGTcount: A:0.36, C:0.15, G:0.18, T:0.31
Consensus pattern (304 bp):
TTTGTCTTATTTAAAGGACAAACTTTGATTCTATGAAAAATGGTGGTAAAAATGCCTTTCTTGCA
AAGCCAAACCATCAATGTCATGTATCTCAATAAGGATTTTTGGTGCCCAATCATGAAAAGAATGA
AGACTATTACAAGAATCTATATTTGTCTAATTTGAGGGTGAACTTTGATTTATAGGAAAATAAGT
CAAAGAAAAGCTTTACTTTTGAAGCCAAACATCAATATCTATTAATGAGGAGAACATATTTACGG
CCTCAATCATGAAATGATGGAGATGGTTACAACAATCCAAATCC
Found at i:147078 original size:21 final size:21
Alignment explanation
Indices: 147054--147100 Score: 67
Period size: 21 Copynumber: 2.2 Consensus size: 21
147044 ACTAAATTGC
147054 AATTCAATTATCTTCCTTTCT
1 AATTCAATTATCTTCCTTTCT
* * *
147075 AATTCACTTATTTTCTTTTCT
1 AATTCAATTATCTTCCTTTCT
147096 AATTC
1 AATTC
147101 TTTTTCTTTC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.23, C:0.21, G:0.00, T:0.55
Consensus pattern (21 bp):
AATTCAATTATCTTCCTTTCT
Found at i:147568 original size:3 final size:3
Alignment explanation
Indices: 147560--147591 Score: 55
Period size: 3 Copynumber: 10.7 Consensus size: 3
147550 CGAGTCAACT
*
147560 TCA TCA TCA TCA TCG TCA TCA TCA TCA TCA TC
1 TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TC
147592 TTTGATGGTT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.28, C:0.34, G:0.03, T:0.34
Consensus pattern (3 bp):
TCA
Found at i:149063 original size:13 final size:13
Alignment explanation
Indices: 149045--149070 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
149035 TACAGCAAGT
149045 ATGTATCGATACA
1 ATGTATCGATACA
149058 ATGTATCGATACA
1 ATGTATCGATACA
149071 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:151319 original size:21 final size:21
Alignment explanation
Indices: 151286--151330 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
151276 TTGCAAGTTG
*
151286 AAATAAAGAAGTTGGCTAATGA
1 AAATAAAGAAGTTAGCTAA-GA
*
151308 AAATAATG-AGTTAGCTAAGA
1 AAATAAAGAAGTTAGCTAAGA
151328 AAA
1 AAA
151331 ATGAAAACTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 5 0.24
21 9 0.43
22 7 0.33
ACGTcount: A:0.53, C:0.04, G:0.20, T:0.22
Consensus pattern (21 bp):
AAATAAAGAAGTTAGCTAAGA
Found at i:153149 original size:15 final size:15
Alignment explanation
Indices: 153129--153159 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
153119 TAAAAATGTC
*
153129 CAAAATGAGGAAGCT
1 CAAAATGAAGAAGCT
153144 CAAAATGAAGAAGCT
1 CAAAATGAAGAAGCT
153159 C
1 C
153160 CAAACGAAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.48, C:0.16, G:0.23, T:0.13
Consensus pattern (15 bp):
CAAAATGAAGAAGCT
Found at i:155427 original size:20 final size:20
Alignment explanation
Indices: 155384--155429 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 20
155374 AAATCTTTTG
155384 CAAAATACTTGTTTTTCACTT
1 CAAAATACTTGTTTTTCAC-T
*
155405 CAAATTACTTCGTTTTTCA-T
1 CAAAATACTT-GTTTTTCACT
155425 CAAAA
1 CAAAA
155430 CCAGCATCAA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
20 5 0.23
21 9 0.41
22 8 0.36
ACGTcount: A:0.33, C:0.20, G:0.04, T:0.43
Consensus pattern (20 bp):
CAAAATACTTGTTTTTCACT
Found at i:157096 original size:19 final size:20
Alignment explanation
Indices: 157072--157111 Score: 73
Period size: 19 Copynumber: 2.0 Consensus size: 20
157062 TGATATGAAT
157072 TACTTGATTAA-GGGGAGAA
1 TACTTGATTAAGGGGGAGAA
157091 TACTTGATTAAGGGGGAGAA
1 TACTTGATTAAGGGGGAGAA
157111 T
1 T
157112 TATTAATAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 11 0.55
20 9 0.45
ACGTcount: A:0.35, C:0.05, G:0.33, T:0.28
Consensus pattern (20 bp):
TACTTGATTAAGGGGGAGAA
Found at i:157858 original size:13 final size:13
Alignment explanation
Indices: 157840--157865 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
157830 TACAGCAAGT
157840 ATGTATCGATACA
1 ATGTATCGATACA
157853 ATGTATCGATACA
1 ATGTATCGATACA
157866 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:159199 original size:13 final size:13
Alignment explanation
Indices: 159181--159205 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
159171 ACCAAAATCA
159181 TGTATCGATACAC
1 TGTATCGATACAC
159194 TGTATCGATACA
1 TGTATCGATACA
159206 AAGCAATATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.20, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAC
Found at i:159237 original size:20 final size:21
Alignment explanation
Indices: 159214--159252 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
159204 CAAAGCAATA
*
159214 TGTATTGATAC-TTCTAGGTC
1 TGTATCGATACTTTCTAGGTC
159234 TGTATCGATACTTTCTAGG
1 TGTATCGATACTTTCTAGG
159253 GTTTTGACCT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 10 0.59
21 7 0.41
ACGTcount: A:0.21, C:0.15, G:0.21, T:0.44
Consensus pattern (21 bp):
TGTATCGATACTTTCTAGGTC
Found at i:161203 original size:476 final size:475
Alignment explanation
Indices: 159496--163908 Score: 5234
Period size: 476 Copynumber: 9.3 Consensus size: 475
159486 GATCCTAACA
* * *
159496 ATTTTCTTTTGTATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATGAAAATTCAACCATTAA
1 ATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAATTCAACCCTTAA
* * * * * * * * *
159561 ATATGACAAGCATCGATTCTCGTAACAGTCGT-AATTCATTCCAAGACTGGGAAACAAGAACGCA
66 ATATGGCAAGCATTGATTCTTGTAACAGTC-TCCATTCTTTTCAAGATTGGGAACCAAGAACACA
* * * *
159625 TTCCCTTCATTAGGCTACATGATATTGATGCTTTGGGGTGACAAGAAATGCTTTTCTTTCCACCA
130 TTCCCTTCATTAGGATACATGATATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCA
*
159690 TTTTTGATAGAATCAAAGTTTGTCTCTTAAATAACACAAACATGAATACTCATACTAATCCCCAT
195 TTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCCAT
* * * *
159755 TCTTTTTAGGATTAGACACTATAAACTTAGTTTTCTCATAAGGATACACGATACTAATGCTTTGG
260 TCTTTTCAGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATACTAATGCTTTGG
* * *
159820 TTTCGCAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGATCGTGCCTAAAATGTGAC
325 TTTTGCAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGTGAC
* *
159885 AAATGTGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACGCATTC-TCTT
390 AAACGTGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAA-ACATTCTTC-T
* *
159949 CAGTAGGATAAATGATATTGATG
453 CATTAGGATAAATGATATTGAAG
** * * ** **
159972 ATTTTCTTTAACATGGAAATCTTTTCTTTACCTTATTTTCCTTAAAATCAAAGCTCATGCCTTAA
1 ATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAATTCAACCCTTAA
* * * * * * * *
160037 ATAAGGCAAGCGTTGACTCTTGTAATAGTATCCATTCTTTTAAAGATTAGGAACCAAAAACACAT
66 ATATGGCAAGCATTGATTCTTGTAACAGTCTCCATTCTTTTCAAGATTGGGAACCAAGAACACAT
* * * * * ** *
160102 TTCTTTCATTAGGATACATGACATTTATCCTTTCCTGTCGCAAGAAAAGCTTTTCTTTCCACCAT
131 TCCCTTCATTAGGATACATGATATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCAT
* * *
160167 TTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACATACAAGAATACTCATACTAATCTCCA-T
196 TTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCCATT
* * * * *
160231 CTTTTCAAGATTAGGCACCATAAACGTAATCTTCTCGTAAGGATACACCATACTAATGCTTTGGT
261 CTTTTCAGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATACTAATGCTTTGGT
* *
160296 TTTACAAGAAAGGCTTTCTTCCCACTAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGTGACA
326 TTTGCAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGTGACA
* * * * * * *
160361 AACGTGGACTCTGGTAATGATCCTCATTCATTTTGTAATTAGGTACTATAAAAACAATCTTGTCA
391 AACGTGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTAT-AAAACATTCTTCTCA
*
160426 TTAGGATGAATGATATTGAAG
455 TTAGGATAAATGATATTGAAG
* * ** * * *
160447 ATTTTCATTTGCAAGGAAATAATTTCTTTGCCATATTTTCCTT--AATCAAAGTTCATCCCTTAA
1 ATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAATTCAACCCTTAA
* * * *
160510 ATATGGCAAGCATTGATTCTTGTAACACTCTCCATTCTTTTCAAGATTGAGAAGCAAGAAAACAT
66 ATATGGCAAGCATTGATTCTTGTAACAGTCTCCATTCTTTTCAAGATTGGGAACCAAGAACACAT
* * * *
160575 TCTCTTCATTAGGATACATGATATTAATGCTTTGGTGTCGCAAGAAAAGCTTTTCATT-CATCCA
131 TCCCTTCATTAGGATACATGATATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCA-CCA
* * * * *
160639 TTTTTTATAAAATCAGAGTTTATCTCTTAAATAAGACAAATATGAATACTCATACTAATCCCCAT
195 TTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCCAT
* * * * * *
160704 TCTTTTCAAGATTAGGCACCATAAACTTAGTATTCTTATAAGGATACACAATATTAATGTTTTGG
260 TCTTTTCAGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATACTAATGCTTTGG
* * * *
160769 TTTTGTAAAAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTTGTGCCTCAAGTGTGAC
325 TTTTGCAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGTGAC
* * * * *
160834 AGACGTGGGTTCTAGTAATGATCTTTATTCATTTTGTGATTAGGCATTATAACAACATTTTTCTC
390 AAACGTGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAA-AACATTCTTCTC
160899 ATTAGGATAAATGATATTGAAG
454 ATTAGGATAAATGATATTGAAG
* *
160921 ATTTTCTTTTGCATGGAAATCTTTTCTTTGCCTTATTTTCCTT-AAATCCAAAATTCATCCCTTA
1 ATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAAT-CAAAATTCAACCCTTA
* *
160985 AATATGGCAAGCATTGATTCTTGTAACCGTTTCCATTCTTTTCAAGATTGGGAACCAAGAACACA
65 AATATGGCAAGCATTGATTCTTGTAACAGTCTCCATTCTTTTCAAGATTGGGAACCAAGAACACA
** * * *
161050 TTCCCTTCATTAGGATGTATGATATTGATGCTTTGGTGTCACAAGAAATGCTTTTCTTTTCACCT
130 TTCCCTTCATTAGGATACATGATATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCA
* * * * *
161115 TTTTTGATAGAATCAAAGTTTGTCTTTTAAATAAGACAAACTTTAATAGTCATACTAATCCCTAT
195 TTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCCAT
* * * * * * * *
161180 TCTTTTTAGGCTTAGTCACCATAAACTTAGTTTTCTCATCATGATACACGATATTGATGCTTTGG
260 TCTTTTCAGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATACTAATGCTTTGG
* * * * *
161245 TTTCGTAACAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTGCATGCCTCAAATGTGAC
325 TTTTGCAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGTGAC
* * * * * *
161310 AAACTTGGATTCTAGCAATGATTTTCAGTCACTTTGTGATTAGGCACTATAAAGACATTCTCCTC
390 AAACGTGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAA-ACATTCTTCTC
* *
161375 ATTAGCATAAATGATATTGATG
454 ATTAGGATAAATGATATTGAAG
* *
161397 ATTTTCTTTTGCA-GGAAAATCTTTTCTTTGCCCTATTTTCCATAAAATCAAAATTCAACCATTA
1 ATTTTCTTTTGCATGG-AAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAATTCAACCCTTA
* * * * ** * * * *
161461 AATATGACATGCATCGATCCTTAAAAAAGTCGCAATTCCTTTCAAGATTGGGAACCAAGAACACA
65 AATATGGCAAGCATTGATTCTTGTAACAGTCTCCATTCTTTTCAAGATTGGGAACCAAGAACACA
* * * * ***
161526 TTCCCTTCATTAGGATACATGATATTAATGCTTTGGGGTCACAAGAGAAGTTTTTCTTTCCATTG
130 TTCCCTTCATTAGGATACATGATATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCA
* * * *
161591 TTTTTAATAGAATCAAAGTTAGTCTCTTAAATAAGAC-AACGT-AGATACTCATACAAATCCCCA
195 TTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGA-ATACTCATACTAATCCCCA
* * * * * *
161654 TCCTTTTTAGGATTAGGCACCGTAAACTTAGTCTTCTCATACA-AACACACGATACTGATGCTTT
259 TTCTTTTCAGGATTAGGCACCATAAACTTAGTCTTCTCATA-AGGATACACGATACTAATGCTTT
* * * * * * * * *
161718 GGTTTCGTAAGAAAAGCTTTCTTCCCACCAATTTCTGTAAAGTCGAGGTTCGGGCCTAAAATATG
323 GGTTTTGCAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGTG
* *
161783 ACAAACGTGGACTCTAGTAATGATCTTCATTTATTTTGTGATTAGGCACTATAAAAACATTCTTC
388 ACAAACGTGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTAT-AAAACATTCTTC
* *
161848 TCATTAGGACAAAGGATATTGAAG
452 TCATTAGGATAAATGATATTGAAG
**
161872 A------TTT---T----A-----T-TTTGCCCTATTTTCCTTAAAATCAATGTTCAACCCTTAA
1 ATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAATTCAACCCTTAA
* * * * *
161918 ATATGGCATGCATTGATTCTTGTAACAGTTTTCATTCTTTTCAAGATTGGGAACTAAGAACGCAT
66 ATATGGCAAGCATTGATTCTTGTAACAGTCTCCATTCTTTTCAAGATTGGGAACCAAGAACACAT
* * * * * *
161983 TTCTTTTATTAGGATACATGATATTGATGCATTGGTGTCACAAGAAAAACATTTCTTTCCACCAT
131 TCCCTTCATTAGGATACATGATATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCAT
* * * * *
162048 TTTTGATAGAGTCAAAGTTTGTATCTTACATCTTACATAAGACAAACTTGAATAGTCATACAAAT
196 TTTTGATAGAATCAAAGTTTG-----T-C-TCTTAAATAAGACAAACATGAATACTCATACTAAT
* * * * * * **
162113 TCCCATTCTTTTTAGGATTACGCACCATAAAATAAGTCTTCTCATAAGGATACACGATATTAACA
254 CCCCATTCTTTTCAGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATACTAATG
*
162178 CTTT-GTTTTGGCAAGAAAGGCTTT-TTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTAAA
319 CTTTGGTTTT-GCAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAA
* * ** * *
162241 ATATGACAAATGCAGATTCTAGTAATGATCTTCATTCATTTTGGGATTAGGCACTGT-AAACATA
383 ATGTGACAAACGTGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAAACAT-
* *
162305 TCTACTCATTAGGATAAATGATATTGATG
447 TCTTCTCATTAGGATAAATGATATTGAAG
* * * *
162334 ATTTTCCTCTT-CATGGAAATCTTTTCTTTGCCTTATTTTCCTTAAAATGAAAATTCAACCGTTA
1 ATTTT-CTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAATTCAACCCTTA
* * ** * * * * * * *
162398 AATATGACAAGCATCGATTCTCCTAACAGTCACAATTCATTCCAAGACTAGGAAACAAGAACACA
65 AATATGGCAAGCATTGATTCTTGTAACAGTCTCCATTCTTTTCAAGATTGGGAACCAAGAACACA
* * *
162463 TTCCCTTCATTAGGCTACATGATATTGATGCTTTGGGGTCACAAGAAAAGCTTTTCTTCCCACCA
130 TTCCCTTCATTAGGATACATGATATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCA
*
162528 TTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATTCCCAT
195 TTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCCAT
* * * *
162593 TCTTTTCAGGATTTGGCACCATAAACTTAGTTTTCTCATAAGGACACATGATACTAACT-CTTT-
260 TCTTTTCAGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATACTAA-TGCTTTG
* * *
162656 GTTTTCGCAAGAAAGGCTTTCTTCCCATCAATTTTTGTAAAGTCTAGGTTCGTGCCTAAAATGTG
324 GTTTT-GCAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGTG
* * * * *
162721 ACAAACATGGATTCTAGTAATGATCTTCATTTATTTTGTGATTACGCATTATAAACACATTCTTT
388 ACAAACGTGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAA-ACATTCTTC
* *
162786 TCATTAAGATAAATGATATT-AACA
452 TCATTAGGATAAATGATATTGAA-G
162810 ATTTTCTTTTGCATGGAAATCTTTTC--T----TA--TTCCTTAAAATCAAAATTCAACCAC-TA
1 ATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAATTCAACC-CTTA
* ** * * * * * * * * *
162866 AATATGACAAGTGTTGATTTTTATAACAGTCACTACTCATTTCAAGATTAGGAACAAAGAATACA
65 AATATGGCAAGCATTGATTCTTGTAACAGTCTCCATTCTTTTCAAGATTGGGAACCAAGAACACA
* * * * *
162931 TTCCCTTCATTAGGATACAAGATATTGATGGTTTGGGGTCGCAAGAAAAGCTTTTCTTTCCACCG
130 TTCCCTTCATTAGGATACATGATATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCA
* * * * *
162996 TTTTGGATAGAATCAAAGTTTGTCTCTTAAATAAGACCAACATAAATACTCATACAAATCCCTAT
195 TTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCCAT
* *
163061 TCTTTTCAAGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATACTAACGCTTT-G
260 TCTTTTCAGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATACTAATGCTTTGG
* *** **
163125 TTTTGATAAGAAAATTTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAACATGA
325 TTTTG-CAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGTGA
* * * * *
163190 CAAATGTGGATTCTAGTAATTATCTTCATACATTTTGTGATTACGCACTATAAAAACATTCTTCA
389 CAAACGTGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTAT-AAAACATTCTTCT
163255 CATTAGGATAAATGATATTGAAG
453 CATTAGGATAAATGATATTGAAG
* *
163278 A-TTTCTTTTTTCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCAACCCTTA
1 ATTTTC-TTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAATTCAACCCTTA
* * * *
163342 AATATGGCAAGCTTTGATTCTTGTAACAGTCTCCATTCTTTCCAAGATTGGGAACCAGGAACATA
65 AATATGGCAAGCATTGATTCTTGTAACAGTCTCCATTCTTTTCAAGATTGGGAACCAAGAACACA
* * * * * **
163407 TTCCATTCATTAGGATACATGATATTGATGCTTTGGTGCCACAAGAAAAGCTTTTGTATCAACTG
130 TTCCCTTCATTAGGATACATGATATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCA
* * * * *
163472 TTTTTGATCGAATCAAAGTTTGTCTCTTTAATAAGATAAACATTAATAGTCATACTAATCCCCAT
195 TTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCCAT
* * *
163537 TCTTTTCAAGATTAGGCACCATAAACTTAGTCTTCTCATAAAGATACACTG-TACTAAAGCTTTG
260 TCTTTTCAGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACAC-GATACTAATGCTTTG
* * * ** * * *
163601 GTTTCGCAAGAAAGGCTTTCTACCTACCAATTTCAGAAAAGTCTAAGCTCATGCCTCAAATGTGA
324 GTTTTGCAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGTGA
* * *
163666 CAAATGTGGATTCTAGTAATGATCTACATTCATTTTGTGATTAGGCACAATAAAAACATTCTTCT
389 CAAACGTGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTAT-AAAACATTCTTCT
* *
163731 CATTAGTATAAAAGATATTGAAG
453 CATTAGGATAAATGATATTGAAG
* * * * *
163754 ATTTTCTTTTGCTTGGAAATCTTTTCTTTGCCCTATTTTTCTTAAAATCAAAGTTCATCTCTTAA
1 ATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAATTCAACCCTTAA
* * *
163819 ATATGCCACGCATTGATTCTTGTAACAGTCTCCATTCTTTTCAAGATTGGGAACCAAGAACATAT
66 ATATGGCAAGCATTGATTCTTGTAACAGTCTCCATTCTTTTCAAGATTGGGAACCAAGAACACAT
* *
163884 TTCCTTCATTATGATACATGATATT
131 TCCCTTCATTAGGATACATGATATT
163909 TGTTAGGATC
Statistics
Matches: 3349, Mismatches: 517, Indels: 142
0.84 0.13 0.04
Matches are distributed among these distances:
456 157 0.05
457 1 0.00
461 7 0.00
462 28 0.01
463 102 0.03
464 84 0.03
465 1 0.00
467 5 0.00
468 396 0.12
469 10 0.00
470 3 0.00
471 1 0.00
472 2 0.00
473 181 0.05
474 337 0.10
475 521 0.16
476 1333 0.40
477 20 0.01
480 1 0.00
481 159 0.05
ACGTcount: A:0.32, C:0.18, G:0.14, T:0.36
Consensus pattern (475 bp):
ATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAATTCAACCCTTAA
ATATGGCAAGCATTGATTCTTGTAACAGTCTCCATTCTTTTCAAGATTGGGAACCAAGAACACAT
TCCCTTCATTAGGATACATGATATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCAT
TTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCCATT
CTTTTCAGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATACTAATGCTTTGGT
TTTGCAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGTGACA
AACGTGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAAACATTCTTCTCAT
TAGGATAAATGATATTGAAG
Found at i:164339 original size:20 final size:19
Alignment explanation
Indices: 164314--164367 Score: 74
Period size: 20 Copynumber: 2.7 Consensus size: 19
164304 CTACCACTGT
164314 TTGTATCGATACATG-GCACA
1 TTGTATCGATACATGAG-A-A
164334 TTGTATCGATACATGATGAA
1 TTGTATCGATACATGA-GAA
164354 TTGTATCGATACAT
1 TTGTATCGATACAT
164368 TACTTCAAAT
Statistics
Matches: 32, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
20 30 0.94
21 1 0.03
22 1 0.03
ACGTcount: A:0.31, C:0.15, G:0.19, T:0.35
Consensus pattern (19 bp):
TTGTATCGATACATGAGAA
Found at i:170728 original size:475 final size:473
Alignment explanation
Indices: 169786--170943 Score: 1359
Period size: 475 Copynumber: 2.4 Consensus size: 473
169776 TATCATAGAA
* * * * * * * *
169786 AAAGCCTTTCTTCCCACAAATTTCTGTAAAGTCTAAGTTTATACCTCAAATGTGATAAACATGGA
1 AAAGGCTTTCTTCCCACCAATTTTTATAAAGTCTAAGTTCATGCCTAAAATGTGATAAACGTGGA
*
169851 TTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCTTCATTAGGATA
66 TTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCTT-ATTAAGATA
* * *
169916 AATGATATTGATGATTTTCTTTTGCTTGGAAATCATTTT-TTTCCTCTATTTTCCTTAAAATAAA
130 AATGATATTGATGATTTTCTTTTGCATGGAAATC-TTTTCTTTCC-CTATATTCCTTAAAATCAA
* * * * * * * * * * *
169980 AATTTATGCC-TTAAATATGGCAAGCATTGACTCTCGCAATAGTCTCCATTCTTTTTAAGATTGG
193 AATTCA-ACCATTAAATATGACAAGCATCGACTCTAGAAACAATCTCAATTCATTTCAAGATTGG
* * * * *
170044 GAACCAAAAATAAATTCCCTTTTTTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAATAAC
257 GAACCAAAAATAAATTCCCTTTATTAGGATACACGACATTGATACTTTGGGGTCGCAACAATAAC
* * * ** * **
170109 TTTTTTTCCACCATTTTTAATAGAATCAATGTTTGTCTCTTATATATGACAAACATCAATAGTTC
322 TTTTTTTCCACCAGTTTTAATAGAATCAAAGTTTGTCTCTTAAATAAAACAAACATCAATACTAA
* * * * * * *
170174 TACTAATCCTAATTCTTTTCAAGGTTTGGCACCGTAAATGTAGCCTTTTCTTAAGGATACATGAT
387 TACTAATCCTAATTCTTTTCAAGATTAGGCACCATAAATGTAGCCTTCTCATAAAGATACACGAT
*
170239 ACTAACGATTTGTTTTCACAAG
452 ACCAACGATTTGTTTTCACAAG
*
170261 AAAGGCTTTCTTCCCACCAATTTTTATAAAGTCTAAG-TCAGTGCCTAAAATGTGACAAACGTGG
1 AAAGGCTTTCTTCCCACCAATTTTTATAAAGTCTAAGTTCA-TGCCTAAAATGTGATAAACGTGG
*
170325 ATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTTTAAACACATTCTCGTTATTAAGAT
65 ATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTC-TTATTAAGAT
170390 AAATGATATTGATGATTTTCTTTTGCATGG-AATCTTTTCTTTGCCCTATATTCCTTAAAATCAA
129 AAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTT-CCCTATATTCCTTAAAATCAA
* * *
170454 AATTCAACCATTAAATATGACAAGCATCGATTCTAGAAACAATCGT-AATTCATTTCATGGTTGG
193 AATTCAACCATTAAATATGACAAGCATCGACTCTAGAAACAATC-TCAATTCATTTCAAGATTGG
* ** *
170518 GAACCAAGAATGTATT-CCTTTCATTAGGATACACGATATTGATACTTTGGGGAT-GCAACAA-A
257 GAACCAAAAATAAATTCCCTTT-ATTAGGATACACGACATTGATACTTTGGGG-TCGCAACAATA
* * * * *
170580 AGCTTTTCTTTTCACCGGTTTTGATAGAATTAAAGTTTGTCTCTTAAATAAAACAAACATGAATA
320 A-CTTTT-TTTCCACCAGTTTTAATAGAATCAAAGTTTGTCTCTTAAATAAAACAAACATCAATA
* * * * *
170645 CTAATACTAATCCTTATTCTTTTCAAGATTAGGCACCATGAACT-TTGTCTTCTCATAAAGATGC
383 CTAATACTAATCCTAATTCTTTTCAAGATTAGGCACCAT-AAATGTAGCCTTCTCATAAAGATAC
* **
170709 ACGATACCAACGCTTTGTTTTTGCAAG
447 ACGATACCAACGATTTGTTTTCACAAG
* * * ** * *
170736 AAAGGTTTTCTTTCCACCAATTGTTATTCAGTCTAAGTTCTTGCCTAAAATGTGATAAAGGTGGA
1 AAAGGCTTTCTTCCCACCAATTTTTATAAAGTCTAAGTTCATGCCTAAAATGTGATAAACGTGGA
* * * * *
170801 TTCTTGTTATGACCTTCATTCATTTTGGGATTAGGCACTATAAACACATTCTCCTTGTT-AGAAT
66 TTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCT-CTTATTAAG-AT
170865 AAATGATATTGATGATTTT-TTTTGCATGGAAATCTTTTCTTTACCCTATATTCCTTAAAATTC-
129 AAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTT-CCCTATATTCCTTAAAA-TCA
* *
170928 AAATTCCACTATTAAA
192 AAATTCAACCATTAAA
170944 CTTAGTCTTC
Statistics
Matches: 584, Mismatches: 83, Indels: 32
0.84 0.12 0.05
Matches are distributed among these distances:
473 13 0.02
474 132 0.23
475 429 0.73
476 10 0.02
ACGTcount: A:0.31, C:0.17, G:0.13, T:0.38
Consensus pattern (473 bp):
AAAGGCTTTCTTCCCACCAATTTTTATAAAGTCTAAGTTCATGCCTAAAATGTGATAAACGTGGA
TTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCTTATTAAGATAA
ATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTCCCTATATTCCTTAAAATCAAAAT
TCAACCATTAAATATGACAAGCATCGACTCTAGAAACAATCTCAATTCATTTCAAGATTGGGAAC
CAAAAATAAATTCCCTTTATTAGGATACACGACATTGATACTTTGGGGTCGCAACAATAACTTTT
TTTCCACCAGTTTTAATAGAATCAAAGTTTGTCTCTTAAATAAAACAAACATCAATACTAATACT
AATCCTAATTCTTTTCAAGATTAGGCACCATAAATGTAGCCTTCTCATAAAGATACACGATACCA
ACGATTTGTTTTCACAAG
Found at i:173032 original size:29 final size:28
Alignment explanation
Indices: 172960--173036 Score: 91
Period size: 29 Copynumber: 2.7 Consensus size: 28
172950 TACATACTCC
*
172960 TCATTAGGATAAATGATATTGATGATTT
1 TCATTAGGATAAATGATTTTGATGATTT
* * * **
172988 TCTTTTGCATGCATGATTTTGCATGATTT
1 TCATTAGGATAAATGATTTTG-ATGATTT
173017 TCATTAGGATAAATGATTTT
1 TCATTAGGATAAATGATTTT
173037 CTTTTGCACT
Statistics
Matches: 37, Mismatches: 11, Indels: 1
0.76 0.22 0.02
Matches are distributed among these distances:
28 15 0.41
29 22 0.59
ACGTcount: A:0.29, C:0.08, G:0.17, T:0.47
Consensus pattern (28 bp):
TCATTAGGATAAATGATTTTGATGATTT
Found at i:174274 original size:475 final size:475
Alignment explanation
Indices: 173163--186803 Score: 12329
Period size: 475 Copynumber: 28.8 Consensus size: 475
173153 AACAGTCGCA
* * * * * * * * * * * *
173163 ATTCATTTCAAGATTGGAAACCAAGAACACAATCTCTTCACTAAGATACGTGATATTGATGCTAT
1 ATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTTATTAGGATACATGACATTTATGCTTT
* * ** * * *
173228 GGGGTCGCAAGGAAAGCTTTTCTTTTTACCGTTTTTGTTGGAATAAAAGTTTGTCTCTTAAATAA
66 GGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAA
* * *
173293 GACAAACATGAATACTCATACTAATCCCCATTCTATTCAGGATTAGGTACCATAAACTTAGTCTT
131 GACAAACATTAATACTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACTTAGTCTT
** * *
173358 CTCATAAGGATACATAATAATAATGCTTT-GTTTTCGCAAGAAAGGCTTTCTTCCCACCAATTTT
196 CTCATAAGGATACACGATATTAATGCTTTGGTTTT-GCAAGAAAGGCTTTTTTCCCACCAATTTT
** **
173422 TGTAAAGTCTAAGTTCGTGCCT-AAAAATGAC-AATGTGGATTCTAGTAATGATCTTCATTCATT
260 TGTAAAGTCTAAGTTCGTGCCTCAAATGTGACAAACATGGATTCTAGTAATGATCTTCATTCATT
* * * * *
173485 TTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATTG-TATTGATGATATTCTTTT
325 TTGCGATTAGGCACTATAAAAACATTCTTCTCATTAGGATAAA-TGATATTGAAGATTTTCTTTT
* * * * * *
173549 CCATGAAAATCATTTCTTTGCCCTATATTGCTTAAAATCCAAA-TTCAACCATTAAATATAA-CA
389 GCATGAAAATC-TTTTTTTGCCCTATTTTCCTTAAAAT-CAAAGTTCATCCCTTAAATA-AAGCA
* * ** * * ** *
173612 AGCATCGATTCTCATAACAGTGGCA
451 AGCATTGACTCTTGTCATAGTATCC
* * * * * * * ** * *
173637 ACTCATTTCAACATGGGGAACTAAGAACACATTCCCTTCATTATAATACATGATATTGATGCTTT
1 ATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTTATTAGGATACATGACATTTATGCTTT
* * * * *
173702 GGGGTCACAAGGAAAGCATTTT-TTTTCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATA
66 GGTGTCGCAAGAAAAGC-TTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATA
* * * *
173766 AGACAAACATGAATACTCATACTAAT-TCCATTCTTTTTAGGATTAGGCACCATAAACTTAGTCC
130 AGACAAACATTAATACTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACTTAGTCT
* * * ** * * ** * *
173830 TCTCAT-AGAGATACACAATATTGACGCTTTGGTTTCACAATAAAGCCTTTCCTCTCACTAATTT
195 TCTCATAAG-GATACACGATATTAATGCTTTGGTTTTGCAAGAAAGGCTTTTTTCCCACCAATTT
* * * *
173894 TTGTAAAGTCTAAGTTTGTGCCTAAAATGTGACAAATATGGATTCTAGTAACGATCTTCATTCAT
259 TTGTAAAGTCTAAGTTCGTGCCTCAAATGTGACAAACATGGATTCTAGTAATGATCTTCATTCAT
* * *
173959 TTTGCGATTAGGCACTATAAACACATT-TTCCTCATTAGGATAAATGATATCGATGATTTTCTTT
324 TTTGCGATTAGGCACTATAAAAACATTCTT-CTCATTAGGATAAATGATATTGAAGATTTTCTTT
* * * * *
174023 TGCATGAAAATATTTTTTTGCCCTATTTTTCGTAACATCAAAGTTCATCTCTTAAATAAAGCAAG
388 TGCATGAAAATCTTTTTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAAGCAAG
**
174088 CATTGACAGTTGTCATAGTATCC
453 CATTGACTCTTGTCATAGTATCC
* * *
174111 ATTCTTTTCAAGATTGGGAACCAAAAAGACATTCCCTTTATTAGGATAGATGACATTTACGCTTT
1 ATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTTATTAGGATACATGACATTTATGCTTT
* * *
174176 GGTGCCGCAAGAAAAGCTTTTCTTTCAACCGTTTTTGCTAGAATCAAAGTTTGTCTCTTAAATAA
66 GGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAA
* * * *
174241 GATAAACATTAATACTTATACTAATCCCCATTCTTTTAAGGATTAGGCAACATAAACTTAGTCTT
131 GACAAACATTAATACTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACTTAGTCTT
* * * * * *** * *
174306 CTCATAAGGATAGC-TGATACTGACGCTTTGGCTTCAAAAGAAAGGCTTTTTTCCCGCCAATTTC
196 CTCATAAGGATA-CACGATATTAATGCTTTGGTTTTGCAAGAAAGGCTTTTTTCCCACCAATTTT
* * * * *
174370 TGTAAAGTGTTAGTTCGTGCCTTAGATGTGACAAAAATGGATTCTAGTAATGATCTTCATTCATT
260 TGTAAAGTCTAAGTTCGTGCCTCAAATGTGACAAACATGGATTCTAGTAATGATCTTCATTCATT
* * * *
174435 TT-CTGATTAGCCA-TAACAAAAATAGTCTTCTCATTAGGATAAATGATATTGAAGATTTTCTTT
325 TTGC-GATTAGGCACT-ATAAAAACATTCTTCTCATTAGGATAAATGATATTGAAGATTTTCTTT
* * *
174498 TGCATG-AAAT-TTTTTCTTCGCCTTATTTTCCTTAAAATCAAAGTTTATCCTTTAAAT-AAGAC
388 TGCATGAAAATCTTTTT-TT-GCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAAG-C
** *
174560 AAGCA-T--CAATTGTCATAATAGTCTC
450 AAGCATTGACTCTTGTCATAGTA-TC-C
* * * *
174585 AATTATTTTCAAG-TTCGGGAACCAAAAATACA-TCCCTTTCATTAGGATAC-TTAGCATTGATG
1 -ATTCTTTTCAAGATT-GGGAACCAAAAACACATTCCCTTT-ATTAGGATACATGA-CATTTATG
* * *
174647 CTTTGGTGACGCAAGAGAAGCTTTTTTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCT-TTCA
62 CTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTT-A
* * * * *
174711 AATAAGACAAAC-TTGCATAGTCATACTAATCCCCAATCTTTTCAGAATTAGGCATCATAAA-TA
126 AATAAGACAAACATT-AATACTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACT-
* * * * * *
174774 TAGTATTCTCATAAGAATACACGATATTAATGCTTTGGTATTACAAGAAAGGCTTTTTTCTCACT
189 TAGTCTTCTCATAAGGATACACGATATTAATGCTTTGGTTTTGCAAGAAAGGCTTTTTTCCCACC
* * * *
174839 AATTTTTGTGAAGTCAAAGTTCGTGCCTCAAATGAGATAAA-AGTGGATTCTAGTAATGATCTTC
254 AATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGTGACAAACA-TGGATTCTAGTAATGATCTTC
* * *
174903 ATTCATTTTGCGATTAAGCACTATAAACACATTC-TCTTCATTAGGATAAATGAAATTGACA-AT
318 ATTCATTTTGCGATTAGGCACTATAAAAACATTCTTC-TCATTAGGATAAATGATATTGA-AGAT
* * *
174966 TTTCTTTTGCATGGAAATCTTTTCTTTGCCTTATTTT-TTGTAAAATCAAAGTTCATCCCTTAAA
381 TTTCTTTTGCATGAAAATCTTTT-TTTGCCCTATTTTCCT-TAAAATCAAAGTTCATCCCTTAAA
* * *
175030 TAAGGCAAGCATTGACTCTTG-CAATTGTGTCC
444 TAAAGCAAGCATTGACTCTTGTC-ATAGTATCC
* * * *
175062 ATTCTTTTCAGGATTGGGAACCAAAAACACATTCCCTTCATTAGAATACATGACTTTTATGCTTT
1 ATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTTATTAGGATACATGACATTTATGCTTT
* * *
175127 GGTGTTGCAAGAAAAGCTTTT-TTT-CATACGTTTTTTATAGAATCAAAG-TT-TCTCTTAAATA
66 GGTGTCGCAAGAAAAGCTTTTCTTTCCA-CCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATA
* * * * * *
175188 AGACAAACATGAATGCTCGTATTAATCCCCATTCTTTTCAGGAATAGGCACCACAAACTTAGTCT
130 AGACAAACATTAATACTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACTTAGTCT
* * * ** *
175253 TCTCATAAAGATAGACGATATTGATGCTTTGGCTTCAG-AAGAAA-G-TTTTCATCCCACC-ATT
195 TCTCATAAGGATACACGATATTAATGCTTTGG-TTTTGCAAGAAAGGCTTTT-TTCCCACCAATT
* * * * * * * *
175314 TTCTATAAAGTCTTAGTTCGTGCCTTAAATATGACAAACGTGGATTCTAGTAATGACCTCCATTA
258 TT-TGTAAAGTCTAAGTTCGTGCCTCAAATGTGACAAACATGGATTCTAGTAATGATCTTCATTC
* * * * * *
175379 ATTTTGTGATTAGCCA-TGATGAAAACATTCTTCTCATTAGGATAAATGATACTGCAGAATTTCT
322 ATTTTGCGATTAGGCACT-ATAAAAACATTCTTCTCATTAGGATAAATGATATTGAAGATTTTCT
* *
175443 TTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTTATCCTTTAAAT-AAGA
386 TTTGCATGAAAATCTTTT-TTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAAG-
* * * ** *
175507 CAAGCATCGATTCTCGAAATAGTCTCC
449 CAAGCATTGACTCTTGTCATAGTATCC
* * * * * * *
175534 ATTCTTTTGAAGTTTGGGAACCAAAAACGCATTCCCTTCATTAGGATACTTGGCATTGATGCTTT
1 ATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTTATTAGGATACATGACATTTATGCTTT
* ** * * * * *
175599 GGTGCCATAAGAAAAGCTTTTCTTTCTACCATTTTTTATAGAATCAAAGTTTATCTCTGAAATAA
66 GGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAA
* ** * *
175664 GACAAAC-TTGTATTGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACGATAAA-TATAGCC
131 GACAAACATT-AATACTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACT-TAGTC
* *
175727 TTGTCATAAGGATACACGAT-TTCAATGCTTTGATTTTGCAAGAAAGGCTTTTTTCCCACCAATT
194 TTCTCATAAGGATACACGATATT-AATGCTTTGGTTTTGCAAGAAAGGCTTTTTTCCCACCAATT
* * * * * * *
175791 TTTTTAAAGTCAAATTTCGTGCCTCAAATGAGATAAA-AGTGGATTCTAGTAGTGATCTTTATTC
258 TTTGTAAAGTCTAAGTTCGTGCCTCAAATGTGACAAACA-TGGATTCTAGTAATGATCTTCATTC
* * * * * *
175855 ATTTTACAATTAGGCACTGTAAACACATTCTCCTCATTAGGATAAAT-ATATTGACGATTTTCTT
322 ATTTTGCGATTAGGCACTATAAAAACATTCTTCTCATTAGGATAAATGATATTGAAGATTTTCTT
** * * *
175919 TTATAT-AGAAATCTTTTCTTTGCCTTATTTT-TTGTAAAATCAAAGTTCATCCCCT--A-AAA-
387 TTGCATGA-AAATCTTTT-TTTGCCCTATTTTCCT-TAAAATCAAAGTTCATCCCTTAAATAAAG
* *
175978 C-AGCATTGACTCTTGTAATAGTATCT
449 CAAGCATTGACTCTTGTCATAGTATCC
* *
176004 ATTCTTTTAAAGATTGGGAACCAAAAACACATTCCCTTTATTAGGATACATAACATTTATGCTTT
1 ATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTTATTAGGATACATGACATTTATGCTTT
* * * *
176069 GGTGTTGCAAGAAAAGCTTTTCTTTCAACCGTTTTGGATAGAATCAAAGTTTGTCACTTAAATAA
66 GGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAA
* * * *
176134 GACAAAC-TTGAAAACTCAGT-TTAAT-CCC-TTTTTTCTCAGGATTAGGCACCATAAACTTTGT
131 GACAAACATT-AATACTCA-TACTAATCCCCATTCTTT-TCAGGATTAGGCACCATAAACTTAGT
* *
176195 CTTCTCATAAGGATACACGAT-TCTAATGCTTTGTTTTTGCAAGAAAGGATTTCTTT-CCACCAA
193 CTTCTCATAAGGATACACGATAT-TAATGCTTTGGTTTTGCAAGAAAGGCTTT-TTTCCCACCAA
* * * * *
176258 TTTCTATAAAGTCTAAGTTCGTACCTTAAATGTGACAAACGTGGATTCTAGTAATGATCTTCATT
256 TTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGTGACAAACATGGATTCTAGTAATGATCTTCATT
* * * * *
176323 CATTTTGTGATTAGGCACTTTAAAAACATTCTTCTCTTTAGGATAAATGATACTGATGATTTT-T
321 CATTTTGCGATTAGGCACTATAAAAACATTCTTCTCATTAGGATAAATGATATTGAAGATTTTCT
* * * * * * *
176387 TTTGCATGGAAATCTTTCTTTGCCTTATTTTCCTTAAAATTAGAGTTCATCTCTTAAATAAGGCA
386 TTTGCATGAAAATCTTTTTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAAGCA
* *
176452 AGCATTGACTCTTGTAACAGTATCC
451 AGCATTGACTCTTGTCATAGTATCC
* * ** * * *
176477 ATTCTCTTT-AAGATTGGGAATCATAAACACATTTTCTTCATTAGGATATATGACATTTACGCTT
1 ATTCT-TTTCAAGATTGGGAACCAAAAACACATTCCCTTTATTAGGATACATGACATTTATGCTT
* * * * *
176541 TGGTGTCGCAATAAAAGCTTCTCTTTCAATCGTTTTTGATAGAATCAAAGTTTTTCT-TCTAAAT
65 TGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCT-TAAAT
* * * *
176605 AAGACAAACATGAATACTCATACTAATTCCCATTGTTTTTAGGATTAGGCACCATAAACTTAG--
129 AAGACAAACATTAATACTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACTTAGTC
* * * * ** *
176668 ---TCATAAGGATACACGATACTGACGCTTTGGATTCACAAGAAAAGCTTTTTTCCCACCAATTT
194 TTCTCATAAGGATACACGATATTAATGCTTTGGTTTTGCAAGAAAGGCTTTTTTCCCACCAATTT
* * * ** ** * * **
176730 CTATAAACTCTAAGTTCGTGCCTCAAATGTGATTAATGTGGATTCTCGTGATGATCTTCATTTGT
259 TTGTAAAGTCTAAGTTCGTGCCTCAAATGTGACAAACATGGATTCTAGTAATGATCTTCATTCAT
* * *
176795 TTTGCGACTAGCCACTATAAAAACATTCTTCTCGTTAGGATAAATGATATTCG-AG-TCTTT-TT
324 TTTGCGATTAGGCACTATAAAAACATTCTTCTCATTAGGATAAATGATATT-GAAGAT-TTTCTT
* * * * *
176857 TTGCGTGAAAATCCTTTCTTTGACCTATTTTTCTTATAATCAAAGTTCATCCCTTAAAT-AAGAC
387 TTGCATGAAAAT-CTTTTTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAAG-C
* * * * * *
176921 GAGCATCGATTCTCGTAATAGTCTCC
450 AAGCATTGACTCTTGTCATAGTATCC
* ** * * * * * *
176947 ATTCATTTCAAGATTGGGAATGAAAAACACAATCTCTTAATTAGGATACTTGACATTGATGATTT
1 ATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTTATTAGGATACATGACATTTATGCTTT
** * * * *
177012 AATGTCGCAGGAAAAGCTTTTCTTTCCACCGTTTTTAATAGAATAAAAGTTTGTCTCTAAAATAA
66 GGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAA
* * * * *
177077 GACAAAC-TTGAGTAGTCATGCTAATCCCCATTCTTTTTAGGATTAGGCA-TAGTAAA-TATAGT
131 GACAAACATT-AATACTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCA-TAAACT-TAGT
* ** * *
177139 CTTCTCATAAGGATACACGATACTAATGCTTTGGTTACGCAAGAAAGCCTTTTTTCTCACCAATT
193 CTTCTCATAAGGATACACGATATTAATGCTTTGGTTTTGCAAGAAAGGCTTTTTTCCCACCAATT
* * * * * ** *
177204 TTTATATAGTCAAAATTCTTGCCTCAAATGAAACAAA-ATGGATTCTAGTAAAGATCTTCATTCA
258 TTTGTAAAGTCTAAGTTCGTGCCTCAAATGTGACAAACATGGATTCTAGTAATGATCTTCATTCA
* * * * * * *
177268 TTTTGGGATTAGGCACTATCAACACATTCTTTTCATTGGGATAAATGTTATT-AATGATTTTTTT
323 TTTTGCGATTAGGCACTATAAAAACATTCTTCTCATTAGGATAAATGATATTGAA-GATTTTCTT
* * * **
177332 TTGCATGAAAATCTTTTCTTTGCCCTATATTCCTTAAAATCAAATTTCAACCGC-TAAATATGGC
387 TTGCATGAAAATCTTTT-TTTGCCCTATTTTCCTTAAAATCAAAGTTCATCC-CTTAAATAAAGC
* * ** * * *
177396 AAGCATCGATTCTCATAACAGT-TGC
450 AAGCATTGACTCTTGTCATAGTATCC
* * * ** * * * *
177421 ATTTCATTTCAAGATTGGGAACTAAGAATGCATTCCCTTCATAAGGATACATGATATTGATGCTT
1 A-TTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTTATTAGGATACATGACATTTATGCTT
* * * ** *
177486 TGGGGTCGCAAGAAAAACTTTT-TTTTCATAGTTTTTGATAGAATCAAAGCTTGTCTCTTAAATA
65 TGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATA
* * * * *
177550 AGACAAACATGAACACTCATACTAATCCCCACTCTTTTTAGGATTAGGCACCATAAACTTAGCCT
130 AGACAAACATTAATACTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACTTAGTCT
* * * ** * * *
177615 TCTCATAAGGATACATGATACTAACG-TTTTATTTTCGCAAGAAAAGCTTTCTTCCAACCAATTT
195 TCTCATAAGGATACACGATATTAATGCTTTGGTTTT-GCAAGAAAGGCTTTTTTCCCACCAATTT
177679 TTGTAAAGTCTAAGTTCGTGCCTCAAATGTGACAAACATGGATTCTAGTAATGATCTTCATTCAT
259 TTGTAAAGTCTAAGTTCGTGCCTCAAATGTGACAAACATGGATTCTAGTAATGATCTTCATTCAT
* * * *
177744 TTTGTGATTAGGCTCTACAAAAACATTCTTCTTATTAGGATAAATGATATTGAAGATTTTCTTTT
324 TTTGCGATTAGGCACTATAAAAACATTCTTCTCATTAGGATAAATGATATTGAAGATTTTCTTTT
* * * * * *
177809 CCATGGAAATCTTCTCTTTG-CCTAATTTTCCTTAAATTCAAAGTTCATCCTTTAAA-GAAGACA
389 GCATGAAAATCTT-TTTTTGCCCT-ATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAAG-CA
* * * * * *
177872 AGCATCT-ATTCTCGTAACAATCTCC
451 AGCAT-TGACTCTTGTCATAGTATCC
* * * * * * * *
177897 ATTCTTTTCAAGTTTAGGAACCAAAAACACATT-CCTTTCTTTAGGAAACTTGGCGTTGATGCTT
1 ATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTT-ATTAGGATACATGACATTTATGCTT
* * *
177961 TGGTGTCACAAGAAAAGGTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTG--TCTTAAATA
65 TGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATA
* * * * * * *
178024 AGATAAAC-TTGTATAGTCAAACAAATCCCCATTCTTTTCAGGATTAAGCGCCATAAA-TATAGT
130 AGACAAACATT-AATACTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACT-TAGT
* * * *
178087 CTTCTTATAAGGATACACGATATTAATTCTTTGGTTTTGCAAGAAAGCCTTTTTTCTCACCAATT
193 CTTCTCATAAGGATACACGATATTAATGCTTTGGTTTTGCAAGAAAGGCTTTTTTCCCACCAATT
** * * * * * ** **
178152 TTTGTAAAGTGAAAGCTCTTGACTCCAATGAGACAAACATGGATTCTAGTAAAAATCTTTTTTCA
258 TTTGTAAAGTCTAAGTTCGTGCCTCAAATGTGACAAACATGGATTCTAGTAATGATCTTCATTCA
* * * * * *
178217 TTTT-CAAATTAGACACTATAAACACATTCTCCTCATTAAGATAAATCG-TATTG-ACATTTTCC
323 TTTTGC-GATTAGGCACTATAAAAACATTCTTCTCATTAGGATAAAT-GATATTGAAGATTTT-C
* * * * * * *
178279 TTTTGCATGGAAATCATTTCTTTGCCTTATATTCCTTAAAATCAATGTTCATCCCCTAAATAAGG
385 TTTTGCATGAAAATC-TTTTTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAAG
* * * *
178344 TAACCATTGACTCTTGTAACAGTATCC
449 CAAGCATTGACTCTTGTCATAGTATCC
* * * *
178371 ATTCTTTTAAAGAATGGGAACCAAAAATATATTCCCTTCT-TTAGGATACATGACATTTATGCTT
1 ATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTT-TATTAGGATACATGACATTTATGCTT
* * * * *
178435 TGGTGTCGCAAGAAGAGCTTTTCTTTCCACCGATATTGATAGAATCAAAGTTTGTCTTTTAAAAA
65 TGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATA
* * *
178500 AGACAAATATGAATACTCATACTAATCCCCATTCTTTTCAGGATTAGACACCATAAACTTAGTCT
130 AGACAAACATTAATACTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACTTAGTCT
* * * * * *
178565 TCTCATAAGGATACACGATACTGATGCTTTAGTTTTGCAAGAAAGGCTATCTTCCCACCAATTTC
195 TCTCATAAGGATACACGATATTAATGCTTTGGTTTTGCAAGAAAGGCTTTTTTCCCACCAATTTT
* * * * *
178630 TATAAAGTCTAAGTTCGTGCCTCAAATGTAACTAACATGGATTCTAGTGATGATCTTCATTCAAT
260 TGTAAAGTCTAAGTTCGTGCCTCAAATGTGACAAACATGGATTCTAGTAATGATCTTCATTCATT
* * * * * *
178695 TTGTGACTAGCCACAATAAAAACATTCTTCTTATTAGGATAAATGATATTGAAGATTTTTTTTTG
325 TTGCGATTAGGCACTATAAAAACATTCTTCTCATTAGGATAAATGATATTGAAGATTTTCTTTTG
* * * *
178760 AATGAAAATCTTTTCTTTGCCCAATTTTCCTTAAAATCAAAGTTCATCCATTAATTCAAA-CAAG
390 CATGAAAATCTTTT-TTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAAT-AAAGCAAG
* * ** * **
178824 CATCGATTC-TCACAACAGTCCCC
453 CATTGACTCTTGTC-ATAGTATCC
* * * * * * * * * *
178847 ATTC-TTTCAAGATTGGGAACTAAAAACACATCCCCTTTGTTAAGTTACTTGATAATAATGATTT
1 ATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTTATTAGGATACATGACATTTATGCTTT
* * * * * *
178911 AAGGT-T-GCAAGAAAAGCTTTTCTTTACATCGTTTTTGATAGAATCAAAATTTGTCACTAAAAC
66 --GGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAAT
* * * * * *
178974 AAGACAAAC-TTGAATAGTCATGCTAATCCTCATTCTTTTTAGTATTAGGCACTATAAA--TACG
129 AAGACAAACATT-AATACTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACTTA--
* * * * *
179036 GTCTTTTCATAAGGATAAACGATATTAATTCTTTGGCTTTGCAAGAAA-GCTTTTTTTCTCACCA
191 GTCTTCTCATAAGGATACACGATATTAATGCTTTGGTTTTGCAAGAAAGGC-TTTTTTCCCACCA
** * * * * **
179100 ATTTTTGTAAAGTGAAAGTTCTTGCCTCAAATGAGACAAACATTGATTCTAGTAAAGATCTTTTT
255 ATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGTGACAAACATGGATTCTAGTAATGATCTTCAT
* * * * * * * *
179165 TCATTTT-CTAATTCGGCACTACAAACAGATT-TTCCTTATTAGGATAAATGGTATTGACG-TTT
320 TCATTTTGC-GATTAGGCACTATAAAAACATTCTT-CTCATTAGGATAAATGATATTGAAGATTT
* * * * *
179227 ATCTTTTGCATGGAAGTCATTTCTTTGCCCTATATTCCTTAAAATCAAAGTTCATCCCCTAAATA
383 -TCTTTTGCATGAAAATC-TTTTTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATA
* * * *
179292 AGGCAAGCATTGACTCTTATAACAGTATCC
446 AAGCAAGCATTGACTCTTGTCATAGTATCC
* *
179322 ATTCTTTTCAAGATTGGGAACAAAAAACACATTCCCTTCT-TTAGGATACATGACATTTACGCTT
1 ATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTT-TATTAGGATACATGACATTTATGCTT
* * *
179386 TGGTATCGCAAGAAAAGATTTT-TTTCCACC-TATTTTGATAGAATCAAATTTTGTC-CTTTAAA
65 TGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGT-TTTTGATAGAATCAAAGTTTGTCTC-TTAAA
* * ** * *
179448 TAAGACAAACATGAATACTTATTGTAATCCCCATCCTTTTCAGGATTAGGCACCATAAACATAGT
128 TAAGACAAACATTAATACTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACTTAGT
* *** * * * *
179513 CTTCTCATAAGGATACACAACGCTGACGCTTTAGTTTTGCAAGAAAGGCTTTCTTCCCACCAATT
193 CTTCTCATAAGGATACACGATATTAATGCTTTGGTTTTGCAAGAAAGGCTTTTTTCCCACCAATT
* * * * * *
179578 TCTATAAAGTCTAAGTTTGTGCCTCAAATATGACTAACGTGGATTCTAG-AGATGATCTTCATTC
258 TTTGTAAAGTCTAAGTTCGTGCCTCAAATGTGACAAACATGGATTCTAGTA-ATGATCTTCATTC
* * * *
179642 AATTTGTGACTAGCCACTATAAAAACATTCTTCTCATTAGGATAAATGATATTGAAGATTTTCTT
322 ATTTTGCGATTAGGCACTATAAAAACATTCTTCTCATTAGGATAAATGATATTGAAGATTTTCTT
* * * * * * * *
179707 TTGCATGAAAATCTCTTCTTT-CCCTATTTCCCTTAAAATTAAAATTCTTCCGTTAAAT-CAGAT
387 TTGCATGAAAATCT-TTTTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAAG-C
* * ** * * *
179770 AAGCATCGATTCTCATAACAGTCTCC
450 AAGCATTGACTCTTGTCATAGTATCC
* * * * * * ** *
179796 ATTC-TTTAAAGATTAGGAACTAAAAACACATTCCATTTCTTAGGTTAC-TGGTATTGATGCTTT
1 ATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTTATTAGGATACATGACATTTATGCTTT
* * * * *
179859 AAG-GTCACAAGAAAAGCTTTTCTTTCCATCATTTTTGATAGAATCAAAGTTTGTCTCTTAAACA
66 -GGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATA
* * *
179923 AGACAAAC-TTGAAT-CATCATGCTAATCCCCATTCTTTTCAAGATTAGGCACTATAAA-TATAG
130 AGACAAACATT-AATAC-TCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACT-TAG
* * *
179985 TCTTCTCATAAGGATACACGATATTAATTCTTTGGTTTTGCATGAAA-GCTTTTTTTCTCACCAA
192 TCTTCTCATAAGGATACACGATATTAATGCTTTGGTTTTGCAAGAAAGGC-TTTTTTCCCACCAA
** * * ** * * **
180049 TTTTTGTAAAGTGAAAGTTCTTGCCTCAAATGGGATGAACATGGATTCTAGTAAAGATATTTTTT
256 TTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGTGACAAACATGGATTCTAGTAATGATCTTCATT
* * * * * * * * *
180114 CATTTT-CTAATTCGGCGCTATAAACAGATT-TTCCTTATTAGGATAAATGGTATTGACGTTTTT
321 CATTTTGC-GATTAGGCACTATAAAAACATTCTT-CTCATTAGGATAAATGATATTGAAGATTTT
* * * ** * * *
180177 CTTTTGCATGGAAGTCATTTCTTCACCCTATATTCCTTAAAATCAAAGTTCATCCCCTAAATAAG
384 CTTTTGCATGAAAATC-TTTTTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAA
* * *
180242 GCAACCATTGACTCTTGTAACAGTATCC
448 GCAAGCATTGACTCTTGTCATAGTATCC
*
180270 ATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCT-TTAGGATACATGACATTTACGCTT
1 ATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTT-TATTAGGATACATGACATTTATGCTT
* * * * * *
180334 TGGTGTTGCAAGAAAAGCTTTTCTTTCCACCGATTTTCATAGAATCAATGTTTATCTTTTAAATA
65 TGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATA
* * *
180399 AGACAAACATGAATACTCATACTAATCCCCATTCTTTTAAGGTTTAGGCACCATAAACTTAGTCT
130 AGACAAACATTAATACTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACTTAGTCT
* * * * * * *
180464 TTTCACAAGGATACACGATACTGATGCTTTAGTTTTGCAAGAAAGGCTTTCTTCCCACCAATTTC
195 TCTCATAAGGATACACGATATTAATGCTTTGGTTTTGCAAGAAAGGCTTTTTTCCCACCAATTTT
* * * *
180529 TATAAAGTCTAAGTTCGTGCCTCAAATGTGAC-AACAAGGATTCTAGTGATGATCTTCATTCAAT
260 TGTAAAGTCTAAGTTCGTGCCTCAAATGTGACAAACATGGATTCTAGTAATGATCTTCATTCATT
* * * *
180593 TTGTGACTAGCCACTATAAAAACATTCTTCTCATTAGGATAAATGATATTGAAGATTTTTTTTTG
325 TTGCGATTAGGCACTATAAAAACATTCTTCTCATTAGGATAAATGATATTGAAGATTTTCTTTTG
* * * * *
180658 TATGAAAATCTTTTCTTTACCCTATTATCCTTCAAATCAAAGTTCATCTCTTAAAT-AAGACAAG
390 CATGAAAATCTTTT-TTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAAG-CAAG
* * ** * * * *
180722 CATCGATTCTCATAACAATCTCC
453 CATTGACTCTTGTCATAGTATCC
* * * ** ** * * * * * *
180745 ATTC-TTTAAAGATTAGGAACTAAAAATGCGCTCCATTTCTTAGGTTACTTGATATTGATGCCTT
1 ATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTTATTAGGATACATGACATTTATG-CTT
** * * * * * * *
180809 AAG-GCCGCAACAAAAGCTTTTCTTTCCATCATTTTTGATAGAATCAAAGGTTGTCTCTTACACA
65 TGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATA
* * * * *
180873 AGACAAAC-TTGAATAGTCATGCTAATCTCCATTCTTTTCAAGATTAGGCACTATAAA-TATAGT
130 AGACAAACATT-AATACTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACT-TAGT
* * ** * * *
180936 CTTTTCATAAGGATGCTTGATATTAATTCTTTGGTTTTGCATGAAA-GCTTTTTTTCTCACCAAT
193 CTTCTCATAAGGATACACGATATTAATGCTTTGGTTTTGCAAGAAAGGC-TTTTTTCCCACCAAT
** * * * * * **
181000 TTTTGTAAAGTGAAAG-TCTTGCCTCAAATGAGACAAACATAGATTATAGTAAAGATCTTTTTTT
257 TTTTGTAAAGTCTAAGTTCGTGCCTCAAATGTGACAAACATGGATTCTAGTAATGATC-TTCATT
* * * * * * * *
181064 CATTTT-CTAATTAAGTACTATAAACACATT-TTCCTTATTAGGATAAATGGTATTGACGTTTTT
321 CATTTTGC-GATTAGGCACTATAAAAACATTCTT-CTCATTAGGATAAATGATATTGAAGATTTT
* * ** * * *
181127 CTTTTGCATGGAAGTCTTTTCTTCACCCTATATTCCTTAAAATCAAAGTTCATCCCCTAAATAAG
384 CTTTTGCATGAAAATCTTTT-TTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAA
* * *
181192 GCAACCATTGACTCTTGTAACAGTATCC
448 GCAAGCATTGACTCTTGTCATAGTATCC
*
181220 ATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCT-TTAGGATACATGACATTTACGCTT
1 ATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTT-TATTAGGATACATGACATTTATGCTT
* * * * *
181284 TGGTGTTGCAAGAAAAGCTTTTCTTTCCACCGATTTTGATAGAATCAATGTTTATCTTTTAAATA
65 TGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATA
* * * * * *
181349 AGACAAACATGAATACTCATTCTAATCCCCATTCTTCTAAGGTTTAGGCACCATAAACTTAATCT
130 AGACAAACATTAATACTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACTTAGTCT
* * * * * *
181414 TCTCACAAGGATACACGATACTGATGCTTTAGTTTTGCAAGAAAGGCTTTCTTCCCACCAATTTC
195 TCTCATAAGGATACACGATATTAATGCTTTGGTTTTGCAAGAAAGGCTTTTTTCCCACCAATTTT
* * * * *
181479 TATAAAGTCTAAGTTCGTGCCTCAAATGTGACTAACAAGGATTCTAGTGATGATCTTCATTCAAT
260 TGTAAAGTCTAAGTTCGTGCCTCAAATGTGACAAACATGGATTCTAGTAATGATCTTCATTCATT
* * ** ** *
181544 TTGTGACTAACCACTATAAAAACATTCTTCTCATTAGGATAAATGATATAAAAGATTTTTTTTTT
325 TTGCGATTAGGCACTATAAAAACATTCTTCTCATTAGGATAAATGATATTGAAGA--TTTTCTTT
* * *
181609 TGTATG-AAATCTTTTCTTTACCCTATTTTCCTTAAAATCAAAGTTCATCTCTTAAAT-AAGACA
388 TGCATGAAAATCTTTT-TTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAAG-CA
* * ** * * *
181672 AGCATCGATTCTCATAACAGTCTCC
451 AGCATTGACTCTTGTCATAGTATCC
* * * * **** * * * * * *
181697 ATTC-TTTAAAGAATAGGAACTAAAAACGTGCTCCATTTCTTAGGTTACTTGATATTGATGCTTT
1 ATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTTATTAGGATACATGACATTTATGCTTT
* * * * * * * *
181761 AAG-GCCGCAACAAAAGCTTTTCTTTCCATCATTTTTGATAGAATCAAAGGTTGTCTCTTACACA
66 -GGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATA
* * * * *
181825 AGACAAAC-TTGAATAGTCATGCTAATCTCCATTCTTTTCAAGATTAGGCACTATAAA-TATAGT
130 AGACAAACATT-AATACTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACT-TAGT
* * * * *
181888 CTTTTCATAAGGATGCATGATATTAATTCTTTGGTTTTGCAAGAAA-GCTTTTTTTCTCACCAAT
193 CTTCTCATAAGGATACACGATATTAATGCTTTGGTTTTGCAAGAAAGGC-TTTTTTCCCACCAAT
* ** * * * * * **
181952 TTTTGTAATGTGAAAGTTCTTGCCTCAAATGAGACAAACATAGATTATAGTAAAGATCTTTTTTT
257 TTTTGTAAAGTCTAAGTTCGTGCCTCAAATGTGACAAACATGGATTCTAGTAATGATC-TTCATT
* * * * * * * *
182017 CATTTT-CTAATTAAGTACTATAAACACATT-TTCCTTATTAGGATAAATGGTATTGACGTTTTT
321 CATTTTGC-GATTAGGCACTATAAAAACATTCTT-CTCATTAGGATAAATGATATTGAAGATTTT
* * ** * * * * *
182080 CTTTTGCATGGAAGTCTTTTCTTCACCCTATATTCCCTAAAATCAAAGTTTATCCCCTAAATAAG
384 CTTTTGCATGAAAATCTTTT-TTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAA
* * *
182145 GCAAGCATTGACTCTTGTAACATTATCC
448 GCAAGCATTGACTCTTGTCATAGTATCC
* * * * *
182173 ATTCTTTTCAAGATTGAGAACCAAAGACACAGTCCCCTTT-TTAGGATGCATGACATTTACGCTT
1 ATTCTTTTCAAGATTGGGAACCAAAAACACA-TTCCCTTTATTAGGATACATGACATTTATGCTT
* * * * * * * *
182237 TGGTCTCGTAGGAAAAGCTTTTTTTTTCCACCGATTTTGATAGAATCAATGTTTATCTTTTAAAT
65 TGGTGTCGCAAGAAAAGC-TTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAAT
* * *
182302 AAGACAAACATGAATACTCATACTAATCCCTATTCTTTTCAGGTTTAGGCACCATAAACTTAGTC
129 AAGACAAACATTAATACTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACTTAGTC
* * * * * *
182367 TTCTCACAAGGATACACAATACTGATGCTTTAGTTTTGCAAGAAAGGCTTTCTTCCCACCAATTT
194 TTCTCATAAGGATACACGATATTAATGCTTTGGTTTTGCAAGAAAGGCTTTTTTCCCACCAATTT
* * * * *
182432 CTATAAAGTCTAAGTTCGTGCCTCAAATGTGACTAACATGGATTCTAGTGATGATCTTCATTCAA
259 TTGTAAAGTCTAAGTTCGTGCCTCAAATGTGACAAACATGGATTCTAGTAATGATCTTCATTCAT
* * *
182497 TTTGTGACTAGCCACTATAAAAACATTCTTCTCATTAGGATAAATGATATTGAAGATTTT-TTTT
324 TTTGCGATTAGGCACTATAAAAACATTCTTCTCATTAGGATAAATGATATTGAAGATTTTCTTTT
* * * *
182561 GGCCTGAAAATCTTTTCTTT-ACCTATTTTCCTTAAAATCAAAGTTCATCCATTAAGT-AAGACA
389 -GCATGAAAATCTTTT-TTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAAG-CA
** ** *
182624 AGCATTGGTTCTCATAATAGTATCC
451 AGCATTGACTCTTGTCATAGTATCC
* * * * * *
182649 ATTC-TTTCAAGATTGGGAACAAAAAATACATTCCTTTTATTAGGATACTTGATATTAATGCTTT
1 ATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTTATTAGGATACATGACATTTATGCTTT
* ** * * * * *
182713 AAG-GTCAAAAGAAAAGCTTTTATTTCTATCGTTTTTAATAGAATCAAAGTTTGTCTCTTAAACA
66 -GGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATA
* * * * *
182777 AGACAAAC-TTGAAGAGTCATGCTAATCCCCATTCTTTTCAGGTTTAGGCACCATAAACTTACTC
130 AGACAAACATT-AATACTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACTTAGTC
* * * * *
182841 TTCTCACAAGGATACACAATACTGATGCTTTAGTTTTGCAAGAAAGG-TTTTCTTCCCACCAATT
194 TTCTCATAAGGATACACGATATTAATGCTTTGGTTTTGCAAGAAAGGCTTTT-TTCCCACCAATT
* * * * * * * *
182905 TCTATAAAGTCTAAGTTCGTGCCTCAAATGTGACTAACGTGGATTCAAGTGATGATCTTCAATAA
258 TTTGTAAAGTCTAAGTTCGTGCCTCAAATGTGACAAACATGGATTCTAGTAATGATCTTCATTCA
* * * * *
182970 ATTTGTGACTAGCCGCTATAAAAACATTCTTCTCATTCA-GATAAATGATATTGAAGATTTTCTT
323 TTTTGCGATTAGGCACTATAAAAACATTCTTCTCATT-AGGATAAATGATATTGAAGATTTTCTT
* * * *
183034 TTACATGAAAATCTTTTCTTTGCCCTATTTTCCTTAATATCAAAGTTCATCCCATAAAT-AAGAT
387 TTGCATGAAAATCTTTT-TTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAAG-C
* * *** * * *
183098 AAGCATCGATTCGCATAACAGTCTCC
450 AAGCATTGACTCTTGTCATAGTATCC
* * * * * * * *
183124 ATTC--TTCAAAGATTAGGAACTAAAAACACATTCCATTTCTTAGGTTACTTGATATTGATGCTT
1 ATTCTTTTC-AAGATTGGGAACCAAAAACACATTCCCTTTATTAGGATACATGACATTTATGCTT
**
183187 TAAGGCTGT---AAGAAAAGCTTTTCTTTCCATAGTTTTTGATAGAATCAAAGTTTGTCTCTTAA
65 T--GG-TGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAA
* * * ** *
183249 ACAAGACAAAC-TTGAATAGTCATGCTAATCCCCATTCTTTTCAACATTAGGCACTATAAA-TAT
127 ATAAGACAAACATT-AATACTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACT-T
* * * * * *
183312 AGTCTTTTCATAAGGATACGCGATATTAATTCTTTGGTTTTGTAAGAAA-GCTTTTTTCTCGCCA
190 AGTCTTCTCATAAGGATACACGATATTAATGCTTTGGTTTTGCAAGAAAGGCTTTTTTCCCACCA
** * * * **
183376 ATTTTTG-AAATGTGAAAGTTCTTGCCTCAAATGAGACAAACATGGATTCTAGTAAAGATCTTTT
255 ATTTTTGTAAA-GTCTAAGTTCGTGCCTCAAATGTGACAAACATGGATTCTAGTAATGATCTTCA
* * * * * * * *
183440 TTCATTTT-CTAATTAGGCGCTA-AAACACATT-TTCCCTATTAAGAGAAAAGATATTGACA-TT
319 TTCATTTTGC-GATTAGGCACTATAAAAACATTCTTCTC-ATTAGGATAAATGATATTGA-AGAT
* * * ** * *
183501 TTTCTTTTGCATGGAAGTCATTTCTTCACCCTATATTCCCTAAAATCAAAGTTCATTCCC-TAAA
381 TTTCTTTTGCATGAAAATC-TTTTTTTGCCCTATTTTCCTTAAAATCAAAGTTCA-TCCCTTAAA
* *
183565 TAAGGCAAGCATTGACTCTTGTAATAGTATCC
444 TAAAGCAAGCATTGACTCTTGTCATAGTATCC
* *
183597 ATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCT-TTAGAATACATGACATTTACGCTT
1 ATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTT-TATTAGGATACATGACATTTATGCTT
* * * * * *
183661 TAGTCTCGCAAGAAAAGCTTTTCTTTCCACCGATTTTGAGAGAATCAATGTTTATCAT-TTAAAT
65 TGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTC-TCTTAAAT
* * *
183725 AAGACAAACATGAATACTCATACTAATCCCCATTCTTTTCAAGTTTAGGCACCATAAAACTTAGT
129 AAGACAAACATTAATACTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCAT-AAACTTAGT
* * * ** * * **
183790 CTTCTCACAAGGATACATGATACTAATGCTTCAGTTTTGAAAGAAAAGCTTCCTTCCCACCAATT
193 CTTCTCATAAGGATACACGATATTAATGCTTTGGTTTTGCAAGAAAGGCTTTTTTCCCACCAATT
* * * *
183855 TCTATAAAGTCTAAGTTCGTGCCTCAAATGTGACTAACATGGATTCTAGTGATGATCTTCATTCA
258 TTTGTAAAGTCTAAGTTCGTGCCTCAAATGTGACAAACATGGATTCTAGTAATGATCTTCATTCA
* * * * *
183920 ATTTGTGACTAGCCACTATAAAAACATTCTTCTTATTAGGATAAATGATATTGAAGATTTTCTTT
323 TTTTGCGATTAGGCACTATAAAAACATTCTTCTCATTAGGATAAATGATATTGAAGATTTTCTTT
* * *
183985 TGCATGAAAATATTTTCTTTGCCCTATTTTCCTTAAAATCAAAATTCATCCGC-AAAAT-AAGAC
388 TGCATGAAAATCTTTT-TTTGCCCTATTTTCCTTAAAATCAAAGTTCATCC-CTTAAATAAAG-C
* * ** * * *
184048 AAGCATCGATTCTCATAACAGTCTCC
450 AAGCATTGACTCTTGTCATAGTATCC
* * * * * * * *
184074 ATTC-TTTCAAGATTGGGAACTAAAATA-ACATTCCCTTTGTTAGAATACTTTATAATAATGCTT
1 ATTCTTTTCAAGATTGGGAACCAAAA-ACACATTCCCTTTATTAGGATACATGACATTTATGCTT
* * * * * *
184137 TAAG-GTCGCAAGAAAAGCTTTTCTTTTCATCGTTTTTGATAAAATCAAAGTTTGTCTCTAAAAG
65 T-GGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAAT
* * * * * * *
184201 AAGACAAAC-TTGAATAGTCATGCTAATCCTCAATCTTTTTATGATTAGGCACTATAAA-TATAG
129 AAGACAAACATT-AATACTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACT-TAG
* * * *
184264 TCTTCTCATAAGGATACACAATATTAATTCTTTGGTTTTGCAAGAAAGCCTTTTTTCTCACCAAT
192 TCTTCTCATAAGGATACACGATATTAATGCTTTGGTTTTGCAAGAAAGGCTTTTTTCCCACCAAT
* * ** * ** * *
184329 TTTTGCATAGTGAAAGTTCCTGCCTCAAATAAGACATAA-ATGGATTCTAGTAAAGATCCTT-TT
257 TTTTGTAAAGTCTAAGTTCGTGCCTCAAATGTGACA-AACATGGATTCTAGTAATGAT-CTTCAT
* * * * * * * *
184392 TTATTTT-CTGATTAGGCACTATAAATATATT-TTCCTTATTAAGATAAATGGTATTGCCA-TTT
320 TCATTTTGC-GATTAGGCACTATAAAAACATTCTT-CTCATTAGGATAAATGATATTG-AAGATT
* ** ** *
184454 TTCTTTTGCATGGAAATCATTTCCTCACCCTATATTT-CTTAAAATCAAAGTTCATCCCCTAAAT
382 TTCTTTTGCATGAAAATC-TTTTTTTGCCCTAT-TTTCCTTAAAATCAAAGTTCATCCCTTAAAT
* * *
184518 -AAG---G---T-AAT-ATGACA-A-TATCC
445 AAAGCAAGCATTGACTCTTGTCATAGTATCC
* * * *
184538 ATT-TTTTACGACATTGGGAACCAAAAATACATTCCCTTCT-TTAGGATACATGACATTTACGCT
1 ATTCTTTT-CAAGATTGGGAACCAAAAACACATTCCCTT-TATTAGGATACATGACATTTATGCT
* * * *
184601 TTGGTATTGCAAGAAAAGCTTTTCTTTCCACCGATTTTGATAGAATCAAAGTTTGTCTTTTAAAT
64 TTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAAT
* * * * *
184666 AAGA-AAA-ATGTGAATACTTATACTAATCCCTATCCTTTTCAAGATTAGGCACCATAAACTAAG
129 AAGACAAACAT-T-AATACTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACTTAG
* * * * * * * *
184729 TCTTCTCGTAAGGATACATGTTACTAACGCTTTAGTTCTGCAAGAAAGGCTTTCTTCCCACCAAT
192 TCTTCTCATAAGGATACACGATATTAATGCTTTGGTTTTGCAAGAAAGGCTTTTTTCCCACCAAT
* * * * * *
184794 TTCTATAAAGTCTAAGTTCGTGCCTTAAATGTGACTAACATGGATTCTAGTGATGATCTTCACTC
257 TTTTGTAAAGTCTAAGTTCGTGCCTCAAATGTGACAAACATGGATTCTAGTAATGATCTTCATTC
* * *
184859 AATTTT-TGACTAGCCACTATAAAAACATTCTTCTCATTAGGATAAATGATATTGAAGATTTTCT
322 -ATTTTGCGATTAGGCACTATAAAAACATTCTTCTCATTAGGATAAATGATATTGAAGATTTTCT
* * * *
184923 TTTGCATGAAAATCTTTTTTTTGCCCTTTTTTCCATAAAATCATAGTTCATCCATT-AATAAGAG
386 TTTGCATGAAAATC-TTTTTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAA-AG
* * ** * * *
184987 -AAGCATCGATTCTCATAACAGTCTCC
449 CAAGCATTGACTCTTGTCATAGTATCC
* * * * * * *
185013 ATT-TTTTCAAGATTGGAAACTAAAAATAAATTCCCTTTATTAGGATACTTGATATTAATGCTTT
1 ATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTTATTAGGATACATGACATTTATGCTTT
* * * * *
185077 AAG-GTCGCAAGAAAAGCCGTTT-TTTCCATCGTTTTTGATAGAATCAAAGTTTGTCTCTAAAAC
66 -GGTGTCGCAAGAAAAG-CTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAAT
* * * * *
185140 AAGTCAAAC-TTGAATAGTCATGCTAATCCTCATTCTTTTCTA-GATTAGGCACTATAAA-TATA
129 AAGACAAACATT-AATACTCATACTAATCCCCATTCTTTTC-AGGATTAGGCACCATAAACT-TA
* * * * * *
185202 GTCTTCACATAAGGATACACGATATTAATTCTTTGGTTTTGCAAGAAAGACTTTTTTCTCTCTAA
191 GTCTTCTCATAAGGATACACGATATTAATGCTTTGGTTTTGCAAGAAAGGCTTTTTTCCCACCAA
* * ** * * * * * * **
185267 TTTCTGTACAGTGAAAGTTCCTACCTCAAATGAGACAAACATGGATTTTAGTAAAGTTCTTTTTT
256 TTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGTGACAAACATGGATTCTAGTAATGATCTTCATT
* * * * * *
185332 CATTTT-CTAATTAGGCACTATAAATATATT-TTCCTCATTAGGATAAATGGTATTGATGTTTTT
321 CATTTTGC-GATTAGGCACTATAAAAACATTCTT-CTCATTAGGATAAATGATATTGAAGATTTT
* * * *
185395 CTTCTGCATGGAAATCATTTCTTTGCCCTATATTT-TTTAAAATCAAAGTTCATCCCTTAAATAA
384 CTTTTGCATGAAAATC-TTTTTTTGCCCTAT-TTTCCTTAAAATCAAAGTTCATCCCTTAAATAA
* *
185459 GGCAAGCATTGACTCTTGTAATAGTATCC
447 AGCAAGCATTGACTCTTGTCATAGTATCC
* * * **
185488 ATTCTTTACAAGATTCGGAACCAAAAATACA-TCCCTTCT-TTAGGATACATGACATTTACCCTT
1 ATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTT-TATTAGGATACATGACATTTATGCTT
* * * * ** * *
185551 TGGTATCACAGGAAAAGCTTTTCTTTCTACCCATTTTGATAGAATCAAAGTTTGTCTTTTAAAAA
65 TGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATA
** * * * * *
185616 AGACAAACACGAATACTCATACTCATCCGCATTCTTCTCAGGATTAGGCACTATAAA-TATAATC
130 AGACAAACATTAATACTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACT-TAGTC
*** * * * *
185680 TTCTCATAAGGATACTTAATATTAATTCTTTGGTTTTGTAAGAAAGCCTTTTTTCTCACCAATTT
194 TTCTCATAAGGATACACGATATTAATGCTTTGGTTTTGCAAGAAAGGCTTTTTTCCCACCAATTT
* * * ** * *
185745 TTGTGAAGT-GAATGTTCCTGCCTCAAATCAGACAATCATGGATTCT-GCTAAAGATCTTTC-TT
259 TTGTAAAGTCTAA-GTTCGTGCCTCAAATGTGACAAACATGGATTCTAG-TAATGATC-TTCATT
* * * * * *
185807 CATTTT-CTGATTAGGCACTATAAACATATTCTCCTCATTAGTATAAATGGTATTGACA-TTTTT
321 CATTTTGC-GATTAGGCACTATAAAAACATTCTTCTCATTAGGATAAATGATATTGA-AGATTTT
* * * * * *
185870 CTTTTGCATGGAAATCATTTCTTTGCCTTGTATTCCTTAAAATCAAAGTTCATCCCTTAAATAAG
384 CTTTTGCATGAAAATC-TTTTTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAA
185935 GCAAGCATTGACTCTTG-CAATAGTATCC
448 GCAAGCATTGACTCTTGTC-ATAGTATCC
* * *
185963 ATTCTTTTAAAAATTGGGAACCAAAAACATATTCCCTTCT-TTAGGATACATGACATTTATGCTT
1 ATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTT-TATTAGGATACATGACATTTATGCTT
* * * * * * *
186027 TGGTGTAGCAAGAAAAGCTTTTCTTTCCACCGATTTTGGTCGAGTCAAAGTTTATCTTTTAAATA
65 TGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATA
* * *
186092 AGACAAATATGAATACTCATACTAATCCCCATTCTTTTCAGGATTAGACACCATAAACTTAGTCT
130 AGACAAACATTAATACTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACTTAGTCT
* * * * * * *
186157 TCTCATAAGGATACGCAATAGTGATGCTTTAGTTTTGCAAGAAAAGCTTTTTT-CCACCAATTTC
195 TCTCATAAGGATACACGATATTAATGCTTTGGTTTTGCAAGAAAGGCTTTTTTCCCACCAATTTT
* * * * * *
186221 TGTAAAATATAAGTTCGTGCCTCAAATGTAACTAACATGGATTCTAGTGATGATCTTCACTCAAT
260 TGTAAAGTCTAAGTTCGTGCCTCAAATGTGACAAACATGGATTCTAGTAATGATCTTCATTC-AT
* * * * *
186286 TTT-TGACTAGCCACTATAAAAACATTCTTCTCCTTAGAATAAATGATATTGAAGATTTTCTTTT
324 TTTGCGATTAGGCACTATAAAAACATTCTTCTCATTAGGATAAATGATATTGAAGATTTTCTTTT
* * *
186350 GCATGAAAATCTTTTTTTTTGCCCTTTTTTTCCTTAAAATCATAGTTCATCCATTAAATAAGAG-
389 GCATGAAAATC--TTTTTTTGCCC-TATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAA-AGC
* * ** * *
186414 AAGCATCGATTCTCATAATAGTCTCC
450 AAGCATTGACTCTTGTCATAGTATCC
* * * * * *
186440 ATT-TTTTCAAGATTGGGAACTAAAAACAAATTCCTTTTATTAGGATACTTGATATTAATGCTTT
1 ATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTTATTAGGATACATGACATTTATGCTTT
* * * * *
186504 AAG-GTCGCAAGAAAAGCTTTT-TTTCTATCGTTTTTCATAGAATCAAAGTTTGTCTTTTAAATA
66 -GGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATA
** * * * * * *
186567 AGACAAATGTGAATACTTATACAAATCCCTATCCTTTTCAAGATTAGGCACCATAAACTTAGTCT
130 AGACAAACATTAATACTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACTTAGTCT
* * * * * * * *
186632 TCTCGTAAGGATACACGTTACTAACGCTTTAGTTCTGCAAGAAAGGCTTTCTTCCCACCAATTTC
195 TCTCATAAGGATACACGATATTAATGCTTTGGTTTTGCAAGAAAGGCTTTTTTCCCACCAATTTT
* * * * * *
186697 TCTAAAGTCTAAGTTCGTGCCTTAAATGTGACTAACATGGATTCTAGTGACGATCTTCACTCAAT
260 TGTAAAGTCTAAGTTCGTGCCTCAAATGTGACAAACATGGATTCTAGTAATGATCTTCATTC-AT
* * *
186762 TTT-TGACTAGCCACTATAAAAACATTCTTCTCATTAGGATAA
324 TTTGCGATTAGGCACTATAAAAACATTCTTCTCATTAGGATAA
186804 CAATCTCCAT
Statistics
Matches: 10694, Mismatches: 2100, Indels: 744
0.79 0.16 0.05
Matches are distributed among these distances:
464 28 0.00
465 319 0.03
466 12 0.00
467 2 0.00
468 40 0.00
469 359 0.03
470 377 0.04
471 21 0.00
472 307 0.03
473 822 0.08
474 2227 0.21
475 3431 0.32
476 2043 0.19
477 482 0.05
478 213 0.02
479 11 0.00
ACGTcount: A:0.32, C:0.18, G:0.13, T:0.37
Consensus pattern (475 bp):
ATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTTATTAGGATACATGACATTTATGCTTT
GGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAA
GACAAACATTAATACTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACTTAGTCTT
CTCATAAGGATACACGATATTAATGCTTTGGTTTTGCAAGAAAGGCTTTTTTCCCACCAATTTTT
GTAAAGTCTAAGTTCGTGCCTCAAATGTGACAAACATGGATTCTAGTAATGATCTTCATTCATTT
TGCGATTAGGCACTATAAAAACATTCTTCTCATTAGGATAAATGATATTGAAGATTTTCTTTTGC
ATGAAAATCTTTTTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAAGCAAGCAT
TGACTCTTGTCATAGTATCC
Found at i:187152 original size:373 final size:372
Alignment explanation
Indices: 186435--187176 Score: 963
Period size: 373 Copynumber: 2.0 Consensus size: 372
186425 CTCATAATAG
*
186435 TCTCCATTTTTTCAAGATTGGGAACTAAAAACAAATTCCTTTTATTAGGATACTTGATATTAATG
1 TCTCCATTTTTTCAAGATTGGGAACTAAAAACAAATTCCCTTTATTAGGATACTTGATATTAATG
* *
186500 CTTTAAGGTCGCAAGAAAAGCTTTTTTTCTATCGTTTTTCATAGAATCAAAGTTTGTCTTTTAAA
66 CTTTAAGGTCGCAAGAAAAGCTTTTTTTCCATCGTTTTTCATAGAATCAAAGTTTGTCTTTAAAA
* *
186565 TAAGACAAATGTGAATACTTATACAAATCCCTATCCTTTTCAAGATTAGGCACCATAAACTTAGT
131 CAAGACAAATGTGAATACTCATACAAATCCCTATCCTTTTCAAGATTAGGCACCATAAACTTAGT
* * * *
186630 CTTCTCGTAAGGATACACGTTACTAACGCTTTAGTTCTGCAAGAAAGGCTTTCTTCCCACCAATT
196 CTTCACATAAGGATACACGATACTAACGCTTTAGTTCTGCAAGAAAGCCTTTCTTCCCACCAATT
* * * * * * * *
186695 TCTCTAAAGTCTAAGTTCGTGCCTTAAATGTGACTAACATGGATTCTAGTGACGATCTTCACTCA
261 TCTCTAAAGTCAAAGTTCCTACCTCAAATGAGACAAACATGGATTCTAGTAAAGATCTTCACTCA
*
186760 ATTTTTGACTAGCCACTATAAAAACATTCTTC-TCATTAGGATAACAA
326 ATTTTTAACTAGCCACTATAAAAACATT-TTCGTCATTAGGATAACAA
186807 TCTCCATTTTTTCAAGATTGGGAACTAAAAACAAATTCCCTTTATTAGGATACTTGATATTAATG
1 TCTCCATTTTTTCAAGATTGGGAACTAAAAACAAATTCCCTTTATTAGGATACTTGATATTAATG
* *
186872 CTTTAAGGTCGCAGGAAAAGCTTTTTTTTCCATCGTTTTTGATAGAATCAAAGTTTGTCTTTAAA
66 CTTTAAGGTCGCAAGAAAAGC-TTTTTTTCCATCGTTTTTCATAGAATCAAAGTTTGTCTTTAAA
* * *** * * *
186937 ACAAGTCAAACT-TGAATAGTCATGGTAAT-CCTCATTCTTTTCCAGATTAGGCACTATAAA-TA
130 ACAAGACAAA-TGTGAATACTCATACAAATCCCT-ATCCTTTTCAAGATTAGGCACCATAAACT-
* ** * * * * *
186999 TAGTCTTCACATAAGGATACACGATATTAATTCTTTGGTTTTGCAAGAAAGCCTTTTTTCTCACT
192 TAGTCTTCACATAAGGATACACGATACTAACGCTTTAGTTCTGCAAGAAAGCCTTTCTTCCCACC
* * * * * **
187064 AATTTTTGTACAGTGAAAGTTCCTACCTCAAATGAGACAAACATGGATTCTAGTAAAGTTCTTTT
257 AATTTCTCTAAAGTCAAAGTTCCTACCTCAAATGAGACAAACATGGATTCTAGTAAAGATCTTCA
* * * * *
187129 TTC-ATTTTCTAATTAGGCACTATAAATATATTTTCGTCATTAGGATAA
322 CTCAATTTT-TAACTAGCCACTATAAAAACATTTTCGTCATTAGGATAA
187177 ATGGTATTGA
Statistics
Matches: 316, Mismatches: 48, Indels: 11
0.84 0.13 0.03
Matches are distributed among these distances:
372 96 0.30
373 219 0.69
374 1 0.00
ACGTcount: A:0.32, C:0.18, G:0.13, T:0.37
Consensus pattern (372 bp):
TCTCCATTTTTTCAAGATTGGGAACTAAAAACAAATTCCCTTTATTAGGATACTTGATATTAATG
CTTTAAGGTCGCAAGAAAAGCTTTTTTTCCATCGTTTTTCATAGAATCAAAGTTTGTCTTTAAAA
CAAGACAAATGTGAATACTCATACAAATCCCTATCCTTTTCAAGATTAGGCACCATAAACTTAGT
CTTCACATAAGGATACACGATACTAACGCTTTAGTTCTGCAAGAAAGCCTTTCTTCCCACCAATT
TCTCTAAAGTCAAAGTTCCTACCTCAAATGAGACAAACATGGATTCTAGTAAAGATCTTCACTCA
ATTTTTAACTAGCCACTATAAAAACATTTTCGTCATTAGGATAACAA
Found at i:187612 original size:849 final size:848
Alignment explanation
Indices: 185960--187652 Score: 2104
Period size: 849 Copynumber: 2.0 Consensus size: 848
185950 TGCAATAGTA
* *
185960 TCCATTCTTTTAAAAATTGGGAACCAAAAACATATTCCCTTCTTTAGGATACATGACATTTATGC
1 TCCATTCTTTTAAAAATTGGGAACCAAAAACAAATTCCCTTCTTTAGGATACATGACATTAATGC
* * * * *
186025 TTTGGTGTAGCAAGAAAAGCTTTTCTTTCCACCGATTTTGGTCGAGTCAAAGTTTATCTTTTAAA
66 TTTAGTGTAGCAAGAAAAGCTTTTCTTTCCACCGATTTTGATAGAATCAAAGTTTATCTTTAAAA
*
186090 TAAGACAAATATGAATACTCATACTAATCCCCATTCTTTTCAGGATTAGACACCATAAACTTAGT
131 CAAGACAAATATGAATACTCATACTAATCCCCATTCTTTTCAGGATTAGACACCATAAACTTAGT
* * *
186155 CTTCTCATAAGGATACGCAATAGTGATGCTTTAGTTTTGCAAGAAAAGCTTTTTTCCACCAATTT
196 CTTCACATAAGGATACACAATAGTAATGCTTTAGTTTTGCAAGAAAAGCTTTTTTCCACCAATTT
* * * * *
186220 CTGTAAAATATAAGTTCGTGCCTCAAATGTAACTAACATGGATTCTAGTGATGATCTTCACTCAA
261 CTGTAAAATATAAGTTCCTACCTCAAATGTAACAAACATGGATTCTAGTAAAGATCTTCACTCAA
* * *
186285 TTTTTGACTAGCCACTATAAAAACATTCTTCTCCTTAGAATAAATGATATTGAAGATTTTCTTTT
326 TTTTTAACTAGCCACTATAAAAACATTCTTCTCATTAGAATAAATGATATTGAAGATTTTCTTCT
* * *** * *
186350 GCATGAAAATCTTTTTTTTTGCCCTTTTTTTCCTTAAAATCATAGTTCATCCATTAAATAAGAGA
391 GCATGAAAATCTATTTCTTTGCCCTACATTTCCTTAAAATCAAAGTTCATCCACTAAATAAGAGA
* * * *
186415 AGCATCGATTCTCATAATAGTCTCCATTTTTTCAAGATTGGGAACTAAAAACAAATTCCTTTTAT
456 AGCATCGACTCTCATAATAGTCTCCATTTTTACAAGATTGGGAACCAAAAACAAATTCCTTCTAT
* * * * **
186480 TAGGATACTTGATATTAATGCTTTAAGGTCGCAAGAAAAGCTTTTTTTCTATCGTTTTTCATAGA
521 TAGGATACATGACATTAATGCTTT-AGGTCGCAAGAAAAGCTTTTTTTCCACCCATTTTCATAGA
* *** * *
186545 ATCAAAGTTTGTCTTTTAAATAAGACAAATGTGAATACTTATACAAATCCCTATCCTTTTCAAGA
585 ATCAAAGTTTATCTTTTAAATAAGACAAACACGAATACTCATACAAATCCCCATCCTTTTCAAGA
* * **
186610 TTAGGCACCATAAACTTAGTCTTCTCGTAAGGATACACGTTACTAACGCTTTAGTTCTGCAAGAA
650 TTAGGCACCATAAACTTAGTCTTCTCATAAGGATAAACGACACTAACGCTTTAGTTCTGCAAGAA
* *
186675 AGGCTTTCTTCCCACCAATTTCTCTAAAGTCTAAGTTCGTGCCTTAAATGTGACTAACATGGATT
715 AGGCTTTCTTCCCACCAATTTCTATAAAGTCTAAGTTCGTGCCTCAAATGTGACTAACATGGATT
*
186740 CTAGTGACGATCTTCACTCAATTTTTGACTAGCCACTATAAAAACATTCTTCTCATTAGGATAAC
780 CTAGTGACGATCTTCACTCAATTTGTGACTAGCCACTATAAAAACATTCTTCTCATTAGGATAAC
186805 AATC
845 AATC
* * * * *
186809 TCCATT-TTTTCAAGATTGGGAACTAAAAACAAATTCCCTT-TATTAGGATACTTGATATTAATG
1 TCCATTCTTTTAAAAATTGGGAACCAAAAACAAATTCCCTTCT-TTAGGATACATGACATTAATG
* * * * * *
186872 CTTTAAG-GTCGCAGGAAAAGCTTTTTTTTCCATCGTTTTTGATAGAATCAAAGTTTGTCTTTAA
65 CTTT-AGTGTAGCAAGAAAAGCTTTTCTTTCCACCGATTTTGATAGAATCAAAGTTTATCTTTAA
* * ** * * *
186936 AACAAGTCAAACT-TGAATAGTCATGGTAATCCTCATTCTTTTCCA-GATTAGGCACTATAAA-T
129 AACAAGACAAA-TATGAATACTCATACTAATCCCCATTCTTTT-CAGGATTAGACACCATAAACT
* * * *
186998 ATAGTCTTCACATAAGGATACACGATATTAATTCTTTGGTTTTGCAAG-AAAGCCTTTTTTCTCA
192 -TAGTCTTCACATAAGGATACACAATAGTAATGCTTTAGTTTTGCAAGAAAAG-CTTTTTTC-CA
* * * * *
187062 CTAATTTTTGTACAGTGA-AAGTTCCTACCTCAAATG-AGACAAACATGGATTCTAGTAAAGTTC
254 CCAATTTCTGTAAAAT-ATAAGTTCCTACCTCAAATGTA-ACAAACATGGATTCTAGTAAAGATC
*** * * * * * * *
187125 TTTTTTC-ATTTTCTAATTAGGCACTATAAATATATT-TTCGTCATTAGGATAAATGGTATTGAT
317 TTCACTCAATTTT-TAACTAGCCACTATAAAAACATTCTTC-TCATTAGAATAAATGATATTGAA
* * *
187188 GTTTTTCTTCTGCATGGAAATC-ATTTCTTTGCCCTACATTT-CTTAAAATCAAAGTTCATCCCC
380 GATTTTCTTCTGCATGAAAATCTATTTCTTTGCCCTACATTTCCTTAAAATCAAAGTTCATCCAC
* ** * *
187251 TAAATAAG-GCAAGCATTGACTCTTGTAATAGTGTCCATTCTTTACAAGATTGGGAACCAAAAAT
445 TAAATAAGAG-AAGCATCGACTCTCATAATAGTCTCCATT-TTTACAAGATTGGGAACCAAAAAC
* * *
187315 ACATTCCCTTCT-TTAGGATACATGACATTTATGCTTT-GGTATCGCAGGAAAAGCTTTTCTTTC
508 AAATT-CCTTCTATTAGGATACATGACATTAATGCTTTAGG--TCGCAAGAAAAGCTTTT-TTTC
* * * *
187378 CACCCATTTTGATAGAATGAAAGTTTATCTTTTAAATAAGACAGACACGAATACTCATACTAATC
569 CACCCATTTTCATAGAATCAAAGTTTATCTTTTAAATAAGACAAACACGAATACTCATACAAATC
* * * *
187443 CCCATTCTTTTCAGGATTAGGCACCATAAACTTAGTCTTCTTATAAGGATAAACGACACTAATGC
634 CCCATCCTTTTCAAGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATAAACGACACTAACGC
*
187508 TTTAGTTTTGCAAGAAAGGCTTTCTTCCCACCAATTTCTATAAAGTCTAAGTTCGTGCCTCAAAT
699 TTTAGTTCTGCAAGAAAGGCTTTCTTCCCACCAATTTCTATAAAGTCTAAGTTCGTGCCTCAAAT
* * ** * *
187573 GTGACTAACGTGGATTTTAGTGATTATCTTCATTCAATTTGTGACTCGCCACTATAAAAACATTC
764 GTGACTAACATGGATTCTAGTGACGATCTTCACTCAATTTGTGACTAGCCACTATAAAAACATTC
187638 TTCTCATTAGGATAA
829 TTCTCATTAGGATAA
187653 ATGATATTGA
Statistics
Matches: 715, Mismatches: 112, Indels: 34
0.83 0.13 0.04
Matches are distributed among these distances:
846 3 0.00
847 57 0.08
848 281 0.39
849 373 0.52
850 1 0.00
ACGTcount: A:0.32, C:0.18, G:0.13, T:0.37
Consensus pattern (848 bp):
TCCATTCTTTTAAAAATTGGGAACCAAAAACAAATTCCCTTCTTTAGGATACATGACATTAATGC
TTTAGTGTAGCAAGAAAAGCTTTTCTTTCCACCGATTTTGATAGAATCAAAGTTTATCTTTAAAA
CAAGACAAATATGAATACTCATACTAATCCCCATTCTTTTCAGGATTAGACACCATAAACTTAGT
CTTCACATAAGGATACACAATAGTAATGCTTTAGTTTTGCAAGAAAAGCTTTTTTCCACCAATTT
CTGTAAAATATAAGTTCCTACCTCAAATGTAACAAACATGGATTCTAGTAAAGATCTTCACTCAA
TTTTTAACTAGCCACTATAAAAACATTCTTCTCATTAGAATAAATGATATTGAAGATTTTCTTCT
GCATGAAAATCTATTTCTTTGCCCTACATTTCCTTAAAATCAAAGTTCATCCACTAAATAAGAGA
AGCATCGACTCTCATAATAGTCTCCATTTTTACAAGATTGGGAACCAAAAACAAATTCCTTCTAT
TAGGATACATGACATTAATGCTTTAGGTCGCAAGAAAAGCTTTTTTTCCACCCATTTTCATAGAA
TCAAAGTTTATCTTTTAAATAAGACAAACACGAATACTCATACAAATCCCCATCCTTTTCAAGAT
TAGGCACCATAAACTTAGTCTTCTCATAAGGATAAACGACACTAACGCTTTAGTTCTGCAAGAAA
GGCTTTCTTCCCACCAATTTCTATAAAGTCTAAGTTCGTGCCTCAAATGTGACTAACATGGATTC
TAGTGACGATCTTCACTCAATTTGTGACTAGCCACTATAAAAACATTCTTCTCATTAGGATAACA
ATC
Found at i:188792 original size:475 final size:474
Alignment explanation
Indices: 186801--192393 Score: 4797
Period size: 476 Copynumber: 11.9 Consensus size: 474
186791 CTCATTAGGA
* * * * * *
186801 TAACAATCTCCATT-TTTTCAAGATTGGGAACTAAAAACAAATTCCCTTTATTAGGATACTTGAT
1 TAACAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGAC
* * * * *
186865 ATTAATGCTTTAAG-GTCGCAGGAAAAGCTTTTTTTTCCATCGTTTTTGATAGAATCAAAGTTTG
66 ATTTATGCTTT-GGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTG
* * * * * ** *
186929 TCTTTAAAACAAGTCAAACTTGAATAGTCATGGTAAT-CCTCATTCTTTTCCA-GATTAGGCACT
130 TCTTTTAAATAAGACAAACATGAATACTCATACTAATCCCT-ATTCTTTT-CAGGATTAGGCACC
* * * * *
186992 ATAAA-TATAGTCTTCACATAAGGATACACGATATTAATTCTTTGGTTTTGCAAGAAAGCCTTTT
193 ATAAACT-TAGTCTTCTCATAAGGATACACGATACTAATGCTTTGGTTTTGCAAGAAAGGCTTTC
* * * ** * * * *
187056 TTCTCACTAATTTTTGTACAGTGAAAGTTCCTACCTCAAATGAGACAAACATGGATTCTAGTAAA
257 TTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGTGACAAA-ATGGATTCTAGTAAT
* * * * * * *
187121 GTTCTTTTTTCATTTTCTAATTAGGCACTATAAATATATT-TTCGTCATTAGGATAAATGGTATT
321 GATCTTCTTTCATTTTGTGATTAGGCACTATAAAAACATTCTTC-TCATTAGGATAAATGATATT
* * * * *
187185 GATGTTTTTCTTCTGCATGGAAATCATTTCTTTGCCCTACATTT-CTTAAAATCAAAGTTCATCC
385 GATGATTTTCTTTTGCATGAAAATC-TTTTTTTGCCCTA-TTTTCCTTAAAATCAAAGTTCATCC
* * * *
187249 CCTAAATAAGGCAAGCATTGACTCTTG
448 CTTAAATAAGACAAGCATTGATTCTCG
* * * * *
187276 TAATAGTGTCCATTCTTTACAAGATTGGGAACCAAAAATACATTCCCTTCTTTAGGATACATGAC
1 TAACAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGAC
* * ** * *
187341 ATTTATGCTTTGGTATCGCAGGAAAAGCTTTTCTTTCCACCCATTTTGATAGAATGAAAGTTTAT
66 ATTTATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGT
* * *
187406 CTTTTAAATAAGACAGACACGAATACTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATA
131 CTTTTAAATAAGACAAACATGAATACTCATACTAATCCCTATTCTTTTCAGGATTAGGCACCATA
* * * *
187471 AACTTAGTCTTCTTATAAGGATAAACGACACTAATGCTTTAGTTTTGCAAGAAAGGCTTTCTTCC
196 AACTTAGTCTTCTCATAAGGATACACGATACTAATGCTTTGGTTTTGCAAGAAAGGCTTTCTTCC
* * ** * * *
187536 CACCAATTTCTATAAAGTCTAAGTTCGTGCCTCAAATGTGACTAACGTGGATTTTAGTGATTATC
261 CACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGTGAC-AAAATGGATTCTAGTAATGATC
* * * * * *
187601 TTCATTCAATTTGTGACTCGCCACTATAAAAACATTCTTCTCATTAGGATAAATGATATTGAAGA
325 TTCTTTCATTTTGTGATTAGGCACTATAAAAACATTCTTCTCATTAGGATAAATGATATTGATGA
*
187666 TTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTATA
390 TTTTCTTTTGCATGAAAATCTTTT-TTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAA
* * *
187731 TAAGATAAGCATCGATTCTCA
454 TAAGACAAGCATTGATTCTCG
* * * * * * * * *
187752 TAACAGTCTACA-TC-TTTAAAAATTAGGAACTAAAAACAGATTCCATTTC-TTAGGTTACTTGA
1 TAACAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCC-CTTCATTAGGATACATGA
* * *
187814 TATTTATGCTTTAAG-GTCGCAAGAAAAGCTTTTCTTTCCATCGTTTTTGATAGAATCAAAGTTT
65 CATTTATGCTTT-GGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTT
* * * * * * *
187878 GTCTCTTAAACAAGACAAACTTGAATAGTCATGCTAAT-CCTCATTCTTTTCAAGATTAGGCACT
129 GTCTTTTAAATAAGACAAACATGAATACTCATACTAATCCCT-ATTCTTTTCAGGATTAGGCACC
* * **
187942 ATAAA-TATAGTCTTCTCATAAGGATACACGATA-TGATTTCTTCAGTTTTGCAAGAAA-GCTTT
193 ATAAACT-TAGTCTTCTCATAAGGATACACGATACT-AATGCTTTGGTTTTGCAAGAAAGGC-TT
* * ** * **
188004 TTTTCTCACCAATTTTTGTAAAGTGAAAGTTCCTGCCTCAAATAAGACAAACATGGATTCTAGTA
255 TCTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGTGACAAA-ATGGATTCTAGTA
* * * * * * * *
188069 AAG-TTTTTTTTCATTTTCTAATTAGGCACTGTAAACATATT-TTCCTCATTAGGATAAATCG-T
319 ATGATCTTCTTTCATTTTGTGATTAGGCACTATAAAAACATTCTT-CTCATTAGGATAAAT-GAT
** * * * *
188131 ATT-AACATTTTTTTTTGCATGAAAATCGTTTCTTTGCCCTATATTCCCTAAAATCAAAGTTCAT
382 ATTGATGATTTTCTTTTGCATGAAAATC-TTTTTTTGCCCTATTTTCCTTAAAATCAAAGTTCAT
* *
188195 CCCCTAAATAAGGA-AAGCGTTG-TCTCTTC-
446 CCCTTAAATAA-GACAAGCATTGAT-TC-TCG
* *
188224 TAACAGTATCCATTCTTTTTAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGAC
1 TAACAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGAC
* * * ** * *
188289 ATTTACGCTTTGGTGTTGCAAGAAAAGCTTTTCTTTTCACCAATTTTGATAGAATCAATGTTTAT
66 ATTTATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGT
* * *
188354 CTTTTAAATAAGACAAACATGAATACTTATACTAATCCCTATTCTTTTCAGGTTTAGACACCATA
131 CTTTTAAATAAGACAAACATGAATACTCATACTAATCCCTATTCTTTTCAGGATTAGGCACCATA
* * * *
188419 AACTTAGTCTTCTTATAAGGATACACGATACTGATGCTTTGGTTTCGCACGAAAGGCTTTCTTCC
196 AACTTAGTCTTCTCATAAGGATACACGATACTAATGCTTTGGTTTTGCAAGAAAGGCTTTCTTCC
** * * * * * *
188484 CAATAATTTCTATAAACTCTAA-TTCGTGCCTCGAATCTGACAAAATTGGATTCTAGTAATGGTC
261 CACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGTGACAAAA-TGGATTCTAGTAATGATC
* * * *
188548 TTCATTCATTTTGTGATTAGCCAATATAAAAACATTCTTCTCATTAGGATAAATGATATTGACGA
325 TTCTTTCATTTTGTGATTAGGCACTATAAAAACATTCTTCTCATTAGGATAAATGATATTGATGA
* * * * * *
188613 TTTTCTTCTACCTGGAAATCATTTTTTTGCCCTATTTTTCTTAAAATCAAAGTTCATCCATTAAA
390 TTTTCTTTTGCATGAAAATC-TTTTTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAA
* *
188678 TAAGATAAGCAATGATTCTCG
454 TAAGACAAGCATTGATTCTCG
* * * * *
188699 TAACAGTCTCTATTCTTTCCAAGTTTGGGAACCAAAAACACATTCCCTTCATTCGGATACATGGC
1 TAACAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGAC
** * * *
188764 ATCGATGCTTTGGTATCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAACCAAAGTTTAT
66 ATTTATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGT
* * *
188829 CTTTTAGAA-AAGGCAAACATTAATACTCATATTAAT-CCTCATTCTCTTT-AGGATTAGGCA-C
131 CTTTTA-AATAAGACAAACATGAATACTCATACTAATCCCT-ATTCT-TTTCAGGATTAGGCACC
* * *
188890 -----CTTAGTCTTCTCATAAGGATACACGATACTAACGCTTT-GTCTTCGCAAGAAATGCATTT
193 ATAAACTTAGTCTTCTCATAAGGATACACGATACTAATGCTTTGGT-TTTGCAAGAAAGGC-TTT
* ** *
188949 -TTCCCACTAATTTTTGTAAAGTCTAAGTTAATGCCTAAAATGTGAC-AAATGGGGATTCTAGTA
256 CTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGTGACAAAAT--GGATTCTAGTA
* * *
189012 ATGATCTTCTTTCATTTTGTGATTAGCCACTATAAACACATTCTGCTCATTAGGATAAATGATAT
319 ATGATCTTCTTTCATTTTGTGATTAGGCACTATAAAAACATTCTTCTCATTAGGATAAATGATAT
* * * * ** *
189077 TGATGATTTTCTTTTACATGAAAATCTTTTCTTTGTCTTATATTCCTTAAAAGAAAAGTTCATGC
384 TGATGATTTTCTTTTGCATGAAAATCTTTT-TTTGCCCTATTTTCCTTAAAATCAAAGTTCATCC
* * ** *
189142 CATAAATAAGGCAAGCATTGGCTCTTG
448 CTTAAATAAGACAAGCATTGATTCTCG
* * *
189169 TAATAG-CATCCACTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTCCATTAGGATACATGA
1 TAACAGTC-TCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGA
* * * *
189233 CATTTACGCTTTGGTGTTGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAATGTTTG
65 CATTTATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTG
* * * *
189298 TCTTTTAAAAAAGACAAACAT-AATACTCATACTAATCCCCATTCTTTTTAGGATTAGGCACTAT
130 TCTTTTAAATAAGACAAACATGAATACTCATACTAATCCCTATTCTTTTCAGGATTAGGCACCAT
* * * ** *
189362 AAGCTTAGTTTTCTCATAAGGATACATGATACTAACACTTTGGTTTTGCAAGAAAGGCTTTCATC
195 AAACTTAGTCTTCTCATAAGGATACACGATACTAATGCTTTGGTTTTGCAAGAAAGGCTTTCTTC
* * * *
189427 CCACCAATTTTTATAAAGTCTAAGTTTGTGCCTCAAATCTGACAAACGTGGATTCTAGTAATGAT
260 CCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGTGACAAA-ATGGATTCTAGTAATGAT
* * * *
189492 CTTCATTCATTTTGTGATTAGGCACTATCAAAACACTCTTCTCATTAGGATAAATGATATTGAAG
324 CTTCTTTCATTTTGTGATTAGGCACTATAAAAACATTCTTCTCATTAGGATAAATGATATTGATG
* * * *
189557 ATTTTCTTTTACATGGAAATCTTTTCTTTGCCCAATTTTCCTTAAAATTAAAGTTCAT-CCTATA
389 ATTTTCTTTTGCATGAAAATCTTTT-TTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCT-TA
* **
189621 AATATGACAAGC-TTCGATTCTTA
452 AATAAGACAAGCATT-GATTCTCG
* * * * **
189644 TAACAGTCTCCATTCTTCTCAAGTTTGGGAACCAAAAACACATTCCCTTCATTAGTATACTTGGT
1 TAACAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGAC
* * * * **
189709 ATTAATGCATTGGTGTCGCAAGAAAATCTTTT-TTCTCCATCGTTTTTGATAGAATCATTGTTTG
66 ATTTATGCTTTGGTGTCGCAAGAAAAGCTTTTCTT-TCCACCGTTTTTGATAGAATCAAAGTTTG
* * * * * * * * *
189773 TGTCTTAAAAAAGTCAAACTTGTATAGTCATATTAATCCCTATTCTTTTCTA-GATTAAGCACCA
130 TCTTTTAAATAAGACAAACATGAATACTCATACTAATCCCTATTCTTTTC-AGGATTAGGCACCA
* * * * **
189837 TAAACATAGTCTTCTCATAAGGATAAATGATAATAATAATTTGGTTTTGCAAGAAAGGCTTT-TT
194 TAAACTTAGTCTTCTCATAAGGATACACGATACTAATGCTTTGGTTTTGCAAGAAAGGCTTTCTT
* ** *
189901 CCCACCAATTTTTGTAAAGTCAAAGTTCGTGCCTCAAATAAGACAAACATGGATTCTAGTAAAGA
259 CCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGTGACAAA-ATGGATTCTAGTAATGA
* * * *
189966 TCTTCTTTCATTTTGAGATTAGGCACTATAAACACACTCTCCTCATTAGGATAAATGATATTGAT
323 TCTTCTTTCATTTTGTGATTAGGCACTATAAAAACATTCTTCTCATTAGGATAAATGATATTGAT
* *
190031 GATTTTCTTTTGCATGAAAATCTTTTTCTTTTGCCATATTTTTCTTAAAATCAAAGTTCATCCCT
388 GATTTTCTTTTGCATGAAAATC--TTT-TTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCT
** *
190096 TAAATAAGGTAAGCATTGACTC-CTG
450 TAAATAAGACAAGCATTGATTCTC-G
* * * * * *
190121 TAATAGTATCCATTCTTTTCAAGATTGGGAACCAAAACCACATTCCCTTCATTAAGAAACATGCC
1 TAACAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGAC
* *
190186 ATTTATGCTTTGGTGTCGCAAGAAAAGCTTTTAC-TTCAACCGTTTTTGATAGAATCAAAGTATG
66 ATTTATGCTTTGGTGTCGCAAGAAAAGCTTTT-CTTTCCACCGTTTTTGATAGAATCAAAGTTTG
* * * * *
190250 TCTTTTAAATAAGATAGACATGAATGCTCGTACTAATCCCTATTCTTTTTAGGATTAGGCACCAT
130 TCTTTTAAATAAGACAAACATGAATACTCATACTAATCCCTATTCTTTTCAGGATTAGGCACCAT
* * * ** * * * * * *
190315 AAACTTAGTCTTCTCATAAGGCTTTCTTC-CCACCAA---TTT--TTAT-AAAGTTTAAGTTCAT
195 AAACTTAGTCTTCTCATAAGG-ATAC-ACGATACTAATGCTTTGGTTTTGCAAG--AAAG-GCTT
* * ** * ***** * * * *** *
190373 ACCTCAAATCTAACAAACGTAGATTCT-AGTAAT-GAT-CTTC--AT-T--CATTTTGTGATAC-
255 TCTTCCCA-CCAATTTTTGTAAAGTCTAAGT--TCG-TGCCTCAAATGTGACAAAATG-GATTCT
* * * * * * * * *
190429 AATAA-AAACATTCTTCTCA-TTAG-GATAAATG-A-TAT-TAAAGATT-TTCT--TT-GG---C
315 AGTAATGATC-TTCTT-TCATTTTGTGAT-TAGGCACTATAAAAACATTCTTCTCATTAGGATAA
* * ** *
190481 ATG-----GA--A--ATC----G--T----ATC----TTTGCCCTATATTCAATGAAATCCAAA-
377 ATGATATTGATGATTTTCTTTTGCATGAAAATCTTTTTTTGCCCTATTTTCCTTAAAAT-CAAAG
* * * * * *
190522 TTCAACCATTAAGTATGATAAGCATTGATTCTCA
441 TTCATCCCTTAAATAAGACAAGCATTGATTCTCG
* * * * * * * * * * * *
190556 TAATAGTCGCAACTCATTTCAAGAGTAGGAACCAAGACCACATTCCCTTCTTTAGGATACAAGAT
1 TAACAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGAC
* * * *
190621 ATTGATGCTTTGGTATCACAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATTAAAGTTTGT
66 ATTTATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGT
* * * * *
190686 CTCTTAAAAAAGACAAACTTGAATAGTCATACTAAT-CCTCATTCGTTTCAGGATTAGGCACCAT
131 CTTTTAAATAAGACAAACATGAATACTCATACTAATCCCT-ATTCTTTTCAGGATTAGGCACCAT
* * * * * * *
190750 AAA-TATAGTTTTCTCATAAGGATACATGATA-TAAATGCTTTGATTTCGTAAGAAAGCCTTTTT
195 AAACT-TAGTCTTCTCATAAGGATACACGATACT-AATGCTTTGGTTTTGCAAGAAAGGCTTTCT
* * * * *
190813 TCTCACCAA-TTTT-T--A---TAA-----AG--TCAAATGAGACAAACATTGATTCTAGTAAAG
258 TCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGTGACAAA-ATGGATTCTAGTAATG
* * * *
190864 ATCTTCATTCATTTTGTGATTAGGCATTATAAACATATTCTTCTCATTAGGATAAATGATATTGA
322 ATCTTCTTTCATTTTGTGATTAGGCACTATAAAAACATTCTTCTCATTAGGATAAATGATATTGA
* * * * * **
190929 TGATTTTTTTTTGCAAGAAAATCTTTTCTTTGCCCTATATTCCTTAAAATCAAATTTCAACTATT
387 TGATTTTCTTTTGCATGAAAATCTTTT-TTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTT
* * * *
190994 AAATATGGCAAGCATCGA-TCATCA
451 AAATAAGACAAGCATTGATTC-TCG
* * * * * **
191018 TAACAGTC-GCATTTCATTTCAAGATTGGGAACCAAGAACACAATCCCTTAAAAAGGATACATGA
1 TAACAGTCTCCA-TTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGA
* * * * * * **
191082 TATTGATACTTTAGG-GTCACAAGAAAAGGTTTTTCTTTTCACAATTTTTGATAGAATCAAAGTT
65 CATTTATGCTTT-GGTGTCGCAAGAAAA-GCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTT
*
191146 TGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCTCC-ATTCTTTTCAGGATTAGG---
128 TGTCTTTTAAATAAGACAAACATGAATACTCATACTAATC-CCTATTCTTTTCAGGATTAGGCAC
* *
191207 C----ACTTAGTCTTCTCATAAGGATACACAATACTAATGCTTT-GTTTTCGAAAGAAAGGCTTT
192 CATAAACTTAGTCTTCTCATAAGGATACACGATACTAATGCTTTGGTTTT-GCAAGAAAGGCTTT
** * * * * ** *
191267 CTTCTAACCAATTTCTGTAAAGTCTAAGTTCGTACCTTAAATGTGATAATCGTGGTTTCTAGTAA
256 CTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGTGACAA-AATGGATTCTAGTAA
* * * * * *
191332 TGATCTTCATTCATTTTGTGATTAGGCACTATAAACATATTATCCTCATTAGGATTAATGATATT
320 TGATCTTCTTTCATTTTGTGATTAGGCACTATAAAAACATTCTTCTCATTAGGATAAATGATATT
* * * * * * * * *
191397 GATGATTTTCTTTTGCATGGAAATCTTATCTTTGCTCTCTATTCCATGAAATCCAAA-CTCAACC
385 GATGATTTTCTTTTGCATGAAAATCTT-TTTTTGCCCTATTTTCCTTAAAAT-CAAAGTTCATCC
* * * *
191461 ATTAAATAAGGCAAGCATCGATTCTCA
448 CTTAAATAAGACAAGCATTGATTCTCG
* * * * * *** ** * * *
191488 TAACAGTCGCAACTCATTTAAAGATTACAAACCAGGAACACATTCCCTTCATTAGGATAAAAGAT
1 TAACAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGAC
* * * * * *
191553 ATTGATGCTTTAAG-GTCGTAATG-AAAGCTTTTCTTTTCACTGTTATTGATAGAATCAAAGTTT
66 ATTTATGCTTT-GGTGTCGCAA-GAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTT
** * * *
191616 GTCTCCTAAATAAGACAAACATGAATACTAATACTAATCCCCACTCTTTTCAGGATTAGGCACCA
129 GTCTTTTAAATAAGACAAACATGAATACTCATACTAATCCCTATTCTTTTCAGGATTAGGCACCA
* * * * *
191681 TAAACTTAGTCCTCTCATAGGGATACACGATACTAATGCTTTGTTTTTGAAAGAAAGGCTTTGTT
194 TAAACTTAGTCTTCTCATAAGGATACACGATACTAATGCTTTGGTTTTGCAAGAAAGGCTTTCTT
** * * * * * *
191746 CTAACCAATTTCTGTAAAGTCTAAGTTCGTGCCTTAAATATGATAATCATGGTTTCTAGTAATGA
259 CCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGTGACAA-AATGGATTCTAGTAATGA
* * * * * * *
191811 TATTCATTCATTTTGTGATTAGGCACTATAAACATATT-ATCATCGTTAGGATTAATGATATTGA
323 TCTTCTTTCATTTTGTGATTAGGCACTATAAAAACATTCTTC-TCATTAGGATAAATGATATTGA
* * * * * * * * * *
191875 TGATTTTCTTTTGCATGGAAATCTTATCTTTGCCCTCTATTCCATGAAATCCAAGCTCAACCATT
387 TGATTTTCTTTTGCATGAAAATCTT-TTTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTT
* * *
191940 AAATAAGGCAAGCATCGATTCTCA
451 AAATAAGACAAGCATTGATTCTCG
* * * * * ** * * *
191964 TAACAGTCGCAACTCATTTCAAGATTAGGAACCAGGAACACATTCCCTTCATTAGGATAAAAGAT
1 TAACAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGAC
* * * * *
192029 ATTGATGCTTTGAG-GTCGCAACAAAAGCTTTTCTTTTCACTGTTATTGATAGAATCAAAGTTTG
66 ATTTATGCTTTG-GTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTG
** * * *
192093 TCTCCTAAATAAGACAAACATGAATACTAATACTAATCCCCACTCTTTTCAGGATTAGGCACCAT
130 TCTTTTAAATAAGACAAACATGAATACTCATACTAATCCCTATTCTTTTCAGGATTAGGCACCAT
* * * *
192158 AAACTTAGTCTTCTCATAGGGATACACGATACAAACGCTTTGTTTTTGCAAGAAAGGCTTTCTTC
195 AAACTTAGTCTTCTCATAAGGATACACGATACTAATGCTTTGGTTTTGCAAGAAAGGCTTTCTTC
* * *
192223 TCACCAATTTCTGTAAAGTCTAAGTTCGTGCCTCAAATGTGACAAATGTGGATTCTAGTAATGAT
260 CCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGTGACAAA-ATGGATTCTAGTAATGAT
* * * * * * * *
192288 CCTCATTCATTTTGTGATTAGGCACTATAAACATATTCTCCTCATTAGGATTAACGATATTGACG
324 CTTCTTTCATTTTGTGATTAGGCACTATAAAAACATTCTTCTCATTAGGATAAATGATATTGATG
* ** * * *
192353 ATTTTCATTTATATGGAAATCTTATCTTTGCCCTATATTCC
389 ATTTTCTTTTGCATGAAAATCTT-TTTTTGCCCTATTTTCC
192394 ATTAGGATAA
Statistics
Matches: 4211, Mismatches: 713, Indels: 387
0.79 0.13 0.07
Matches are distributed among these distances:
422 2 0.00
424 2 0.00
427 9 0.00
428 14 0.00
429 7 0.00
430 4 0.00
431 5 0.00
432 5 0.00
434 13 0.00
435 219 0.05
436 8 0.00
437 8 0.00
438 6 0.00
439 2 0.00
440 3 0.00
442 3 0.00
443 2 0.00
445 1 0.00
446 1 0.00
447 1 0.00
448 1 0.00
451 1 0.00
452 2 0.00
454 1 0.00
455 3 0.00
456 55 0.01
457 8 0.00
458 1 0.00
460 2 0.00
461 10 0.00
462 116 0.03
463 89 0.02
464 2 0.00
465 4 0.00
467 3 0.00
468 12 0.00
469 199 0.05
470 511 0.12
471 26 0.01
472 95 0.02
473 102 0.02
474 509 0.12
475 758 0.18
476 1123 0.27
477 250 0.06
478 13 0.00
ACGTcount: A:0.32, C:0.18, G:0.13, T:0.36
Consensus pattern (474 bp):
TAACAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGAC
ATTTATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGT
CTTTTAAATAAGACAAACATGAATACTCATACTAATCCCTATTCTTTTCAGGATTAGGCACCATA
AACTTAGTCTTCTCATAAGGATACACGATACTAATGCTTTGGTTTTGCAAGAAAGGCTTTCTTCC
CACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGTGACAAAATGGATTCTAGTAATGATCT
TCTTTCATTTTGTGATTAGGCACTATAAAAACATTCTTCTCATTAGGATAAATGATATTGATGAT
TTTCTTTTGCATGAAAATCTTTTTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATA
AGACAAGCATTGATTCTCG
Found at i:192397 original size:63 final size:63
Alignment explanation
Indices: 192330--192456 Score: 164
Period size: 63 Copynumber: 2.0 Consensus size: 63
192320 ATATTCTCCT
* * * *
192330 CATTAGGATTAACGATATTGACGATTTTCATTTATATGGAAATCTTATCTTTGCCCTATATTC
1 CATTAGGATAAACGATATTGACGATTTTCATTTACATAGAAATCTTATCTTTACCCTATATTC
* * * * * *
192393 CATTAGGATAAATGATATTGGCGATTTTCTTTTGCATAGAAATCTTTTCTTTACCTTATATTC
1 CATTAGGATAAACGATATTGACGATTTTCATTTACATAGAAATCTTATCTTTACCCTATATTC
192456 C
1 C
192457 TTAAAATCAA
Statistics
Matches: 54, Mismatches: 10, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
63 54 1.00
ACGTcount: A:0.28, C:0.16, G:0.13, T:0.44
Consensus pattern (63 bp):
CATTAGGATAAACGATATTGACGATTTTCATTTACATAGAAATCTTATCTTTACCCTATATTC
Found at i:193324 original size:473 final size:470
Alignment explanation
Indices: 192393--193437 Score: 1113
Period size: 473 Copynumber: 2.2 Consensus size: 470
192383 CCCTATATTC
** * *
192393 CATTAGGATAAATGATATTGGCGATTTTCTTTTGCAT-AGAAATCTTTTCTTTACCTTATATTCC
1 CATTAGGATAAATGATATTGATGATTTTCTTTTGCATGA-AAATC-TTTCTTTGCCTTATTTTCC
* * * * * * *
192457 TTAAAATCAAAATTCAACCATTAATTATGACAAGAGTTGATTCCCGTAATAGTCATAATTCATTT
64 TT-AAATCAAAATTCATCC-CTAA-TAAGGCAAGAGTTGACTCCCGTAACAATCATAATTCATTT
* * * * **
192522 CAAGATTGGGAACCAATAACATATTCCCTTCATTAGGATACATGATATTGATGCTTTGAGGCCAC
126 CAAGATTGGGAACCAAAAACATATTACCTTCATTAGGATACAGGACATTGACCCTTTGAGGCCAC
* * * * *
192587 AAAAAAAGCTTTTATTTTCACTAATTTTAATAGAATCAAAATTTATCTCTTAAATAAGACCAACA
191 AAAAAAAGCTTTTAGTGTCACCAATTTTAATAGAAGCAAAAGTTATCTCTTAAATAAGACCAACA
*
192652 TGAATACTCATACTAATCCCCATTTTTCAAGATTAGGCACCATAAACTTAGTCTTCTCATAAAGA
256 TGAATACTCATACTAATCCCCATTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATAAAGA
* * ** **
192717 TACATGATATTAACCCTTTTTTTTTGCAAGAAAGCCTTTCTTCTCACCAATTTCTGTAAAGTCTA
321 TACAGGACATTAACCCTTTGGTTTCACAAGAAAGCCTTTCTTCTCACCAATTTCTGTAAAGTCTA
* * ** * *
192782 TGTTCGTATCTAAAATGTGACAAATGTGGATTCTACTAATGATCTTCATTCATTTTGTGATTAGG
386 AGTTCGTACCTAAAATGTGACAAACATGGATTCTAATAATAATCTTCATTCATTTTGTGATTAGG
*
192847 CACTATAAACATATTCTCCT
451 CACTATAAACACATTCTCCT
** *
192867 TTTTAGGATAAATGATATTGATGATTTT-TTTTTCATGAAAATCTTGTCTTTGCCTTATTTTCCT
1 CATTAGGATAAATGATATTGATGATTTTCTTTTGCATGAAAATCTT-TCTTTGCCTTATTTTCCT
* ** * *
192931 TAAAGTCAAAGTTCATCCCTAATAAGGCAAGCA-TTGACTCTTGTAACAAT-ATCCATTCTTTTC
65 TAAA-TCAAAATTCATCCCTAATAAGGCAAG-AGTTGACTCCCGTAACAATCAT-AATTCATTTC
* *
192994 AAGATTGGGAACCAAAAACATATTACCTTCATTCA-GATACAGGACATTTACCCTTTG-GTGCCG
127 AAGATTGGGAACCAAAAACATATTACCTTCATT-AGGATACAGGACATTGACCCTTTGAG-GCCA
** * * *
193057 CATGAAAAGCTTTT-GTGTCAACCATTTTTCATAGAAGC-AAAGTTAGTCTTTTAAATAAGA-CA
190 CAAAAAAAGCTTTTAGTGTC-ACCAATTTTAATAGAAGCAAAAGTTA-TCTCTTAAATAAGACCA
* ** * *
193119 AGCATGAATAGTTGTACTAATCCCTATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCA
253 A-CATGAATACTCATACTAATCCCCA-T-TTTTCAAGATTAGGCACCATAAACATAGTCTTCTCA
* ** * ** * * *
193184 TGAAGATGTAGGACATTGATGCTTTGGTTTCATAAGAAAGGCTTTCTTC-CTACCAATTTTTGTA
315 TAAAGATACAGGACATTAACCCTTTGGTTTCACAAGAAAGCCTTTCTTCTC-ACCAATTTCTGTA
* * * * * *
193248 AAGTTTAAGTTTGTGCCTCAAGTAG-GGCAAACATGGATTCTAATAATAATCTTCATTCATTTTG
379 AAGTCTAAGTTCGTACCTAAAAT-GTGACAAACATGGATTCTAATAATAATCTTCATTCATTTTG
* *
193312 TGATTTGGCACTATAAACACATTTTCCT
443 TGATTAGGCACTATAAACACATTCTCCT
* * * * *
193340 CATTAGGATAAAGGATATTGATGATTTTCTTTTGCATGGAAAGCATTTTTTTGCCCTATTTTCCT
1 CATTAGGATAAATGATATTGATGATTTTCTTTTGCATGAAAATC-TTTCTTTGCCTTATTTTCCT
193405 TGAAATCAAAATTCATCCCTCATATAAGGCAAG
65 T-AAATCAAAATTCATCCCT-A-ATAAGGCAAG
193438 TGTAGATTCT
Statistics
Matches: 470, Mismatches: 82, Indels: 36
0.80 0.14 0.06
Matches are distributed among these distances:
470 15 0.03
471 137 0.29
472 12 0.03
473 221 0.47
474 69 0.15
475 6 0.01
476 10 0.02
ACGTcount: A:0.32, C:0.18, G:0.13, T:0.37
Consensus pattern (470 bp):
CATTAGGATAAATGATATTGATGATTTTCTTTTGCATGAAAATCTTTCTTTGCCTTATTTTCCTT
AAATCAAAATTCATCCCTAATAAGGCAAGAGTTGACTCCCGTAACAATCATAATTCATTTCAAGA
TTGGGAACCAAAAACATATTACCTTCATTAGGATACAGGACATTGACCCTTTGAGGCCACAAAAA
AAGCTTTTAGTGTCACCAATTTTAATAGAAGCAAAAGTTATCTCTTAAATAAGACCAACATGAAT
ACTCATACTAATCCCCATTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATAAAGATACAG
GACATTAACCCTTTGGTTTCACAAGAAAGCCTTTCTTCTCACCAATTTCTGTAAAGTCTAAGTTC
GTACCTAAAATGTGACAAACATGGATTCTAATAATAATCTTCATTCATTTTGTGATTAGGCACTA
TAAACACATTCTCCT
Found at i:194350 original size:434 final size:434
Alignment explanation
Indices: 193746--194564 Score: 1112
Period size: 434 Copynumber: 1.9 Consensus size: 434
193736 AATGATCTTT
* *
193746 ATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGACAAATGATATTGATGATTT
1 ATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCAATAGGACAAATGATATTGATGATTG
193811 TTTTACCATGGAAATATTTTCTTCGCCCTATTTTCCTTAAAAACAAAGTTCATCCCTTAAATAAG
66 TTTTACCATGGAAATATTTTCTTCGCCCTATTTTCCTTAAAAACAAAGTTCATCCCTTAAATAAG
* *
193876 GTAAGCGTCGACTCTTGTCATAATATCCGTTCTATTCAAGATTAGGAA-CAAAAAGCACATTC-C
131 GTAAGCGTCGACTCTTGTCACAATATCCATTCTATTCAAGATTAGGAATCAAAAA-CACATTCTC
* * * * ** * *
193939 TTTCATTAGGGTACTTGACATTGATGCTTTAATGTTGCAAGAAAAGCTTTTCTTTCTACCGTTTT
195 -TTCATTAGGATACATAACATTGAAGCTTTAATGTCACAAGAAAAGCTTTTCTATCAACCGTTTT
* * * * *
194004 TTATAGAATCAAAGTTTGTCTCTTAAAAAAGATAAATTTGAATAGTCATACTAATCCCCATTCTT
259 TTATAGAATCAAAGTTCGTCCCTCAAAAAAGATAAATATGAATAGTCAAACTAATCCCCATTCTT
** * **
194069 TTCCGGATTAGGCACCATAAAGATAGT-CCTGTCATAAGGATACACGATATTGATGCTTTGGTTA
324 TTCAAGATTAGGCACCAT-AACATAGTAATTG-CATAAGGATACACGATATTGATGCTTTGGTTA
194133 CGTAAGAAAGGTTTTCTTCCTTCCAATTTTTGTAAAGTCTATAAACAC
387 CGTAAGAAAGGTTTTCTTCCTTCCAATTTTTGTAAAGTCTATAAACAC
* * * *
194181 ATTCATTTTGTGATTAGGCACTATAAACACATTTTGCTCAATAGGATAAATGATATTGGTGATTG
1 ATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCAATAGGACAAATGATATTGATGATTG
* * * * *
194246 TTTT-GCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCTCTTAAATACA
66 TTTTACCATGGAAATATTTTCTTCGCCCTATTTTCCTTAAAAACAAAGTTCATCCCTTAAATA-A
* * * * * * * *
194310 -GTAAGCATTC-ATTCTTGT-AGCAGTCTCCATTCTTTTCAAGATTGGGAATCGAAAACGCATTC
130 GGTAAGC-GTCGACTCTTGTCA-CAATATCCATTCTATTCAAGATTAGGAATCAAAAACACATTC
* * * *
194372 TCTTCATTAGGATACATAATATTGAAGCTTTAGTGTCATAAGAAAAGGTTTTCTATCAACCGTTT
193 TCTTCATTAGGATACATAACATTGAAGCTTTAATGTCACAAGAAAAGCTTTTCTATCAACCGTTT
* *
194437 TTTATAGAATCAAAGTTCGTCCCTCAAATAAGATAAATATGAATAGTCAAACTAATCCCTATTCT
258 TTTATAGAATCAAAGTTCGTCCCTCAAAAAAGATAAATATGAATAGTCAAACTAATCCCCATTCT
*
194502 TTTCAAGATTAGGCACCATAACATAGTAATTGCATAAGGATACACGATATTGGTGCTTTGGTT
323 TTTCAAGATTAGGCACCATAACATAGTAATTGCATAAGGATACACGATATTGATGCTTTGGTT
194565 TGGAAACAAA
Statistics
Matches: 332, Mismatches: 46, Indels: 14
0.85 0.12 0.04
Matches are distributed among these distances:
433 38 0.11
434 222 0.67
435 72 0.22
ACGTcount: A:0.32, C:0.17, G:0.14, T:0.37
Consensus pattern (434 bp):
ATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCAATAGGACAAATGATATTGATGATTG
TTTTACCATGGAAATATTTTCTTCGCCCTATTTTCCTTAAAAACAAAGTTCATCCCTTAAATAAG
GTAAGCGTCGACTCTTGTCACAATATCCATTCTATTCAAGATTAGGAATCAAAAACACATTCTCT
TCATTAGGATACATAACATTGAAGCTTTAATGTCACAAGAAAAGCTTTTCTATCAACCGTTTTTT
ATAGAATCAAAGTTCGTCCCTCAAAAAAGATAAATATGAATAGTCAAACTAATCCCCATTCTTTT
CAAGATTAGGCACCATAACATAGTAATTGCATAAGGATACACGATATTGATGCTTTGGTTACGTA
AGAAAGGTTTTCTTCCTTCCAATTTTTGTAAAGTCTATAAACAC
Found at i:195237 original size:474 final size:473
Alignment explanation
Indices: 194180--195423 Score: 1502
Period size: 474 Copynumber: 2.6 Consensus size: 473
194170 TCTATAAACA
* * * *
194180 CATTCATTTTGTGATTAGGCACTATAAACACATTTTGCTCAATAGGATAAATGATATTGGTGA-T
1 CATTCACTTTGTGATTAGGCACTATAAACACATTTTCCTCATTAGGATAAATGATATTGATGATT
*
194244 TGTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCTCTTAAATAC
66 TTTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATC-CTTAAATA-
* ** * * *
194309 A-GTAAGCATTCATTCTTGTAGCAGTCTCCATTCTTTTCAAGATTGGGAATCGAAAACGCA-TTC
129 AGGTAAGCATTGATTCTTGTAATAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTTC
* * * ** * *
194372 TCTTCATTAGGATACATA-ATATTGAAGCTTTAGTGTCATAAGAAAAGGTTTTCTATCAACCGTT
194 -CTTCATTAGGATACA-AGACATTGAAGCTTTGGTGTCACAAGAAAAACTTTTCTTTCTACC-TT
** * * * * *
194436 TTTTATAGAATCAAAGTTCGTCCCTCAAATAAGATAAATATGAATAGTCAAACTAATCCCTATTC
256 TTTTATAGAATCAAAGTTTATCTCTTAAATAAGACAAACATAAATAGTCAAACTAATCCCTATTC
* *
194501 TTTTCAAGATTAGGCACCATAACATAGTAATTGCATAAGGATACACGATATTGGTGCTTTGGTTT
321 TTTTCAAGATTAGGCACCATAACATAGTAATTACATAAGGATACACGATATTGATGCTTTGGTTT
* * ** * *
194566 GGAAACAAAGGCTTTTTTTCCCATTAATTTTTGTATAGTCTAAGTTCGAGCCTCAAATGTGACAA
386 CGAAACAAAGGCTTTTATTCCCACCAATTTTTATATAGTCTAAGTTCGAGCCTCAAATATGACAA
* *
194631 ACATTGATTCGAGTAATGATCTT
451 ACATGGATTCGAGTAATCATCTT
* ** * * *
194654 CAGTCACTTCATGATTAGGCACTATAAACACGTTTTCCTTATTAGGATAAATGATAATGATGATT
1 CATTCACTTTGTGATTAGGCACTATAAACACATTTTCCTCATTAGGATAAATGATATTGATGATT
* * * *
194719 TTTTTTGCTTGAAAATCTTTTCTTTGCCCTATATTCCTTAAAATCAAAATTCATCCTTCAAATAA
66 TTTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCTT-AAATAA
* * *
194784 GGCAAGCATTGATTCTCGTAATAGTCTCCATTGTTTTCAAGATTGGGAACCAAAAACACATTTCC
130 GGTAAGCATTGATTCTTGTAATAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTTCC
* * *
194849 TTTATTGGGATACAAGACATTGACGCTTTGGTGTCACAAGAAAAACATTTT-TTTCTA-CTTTTT
195 TTCATTAGGATACAAGACATTGAAGCTTTGGTGTCACAAGAAAAAC-TTTTCTTTCTACCTTTTT
* * *
194912 TAATAGAATCAAAGTTTTTCTTTTAAATAAGACAAACATAAATAGTCACACTAATCCC-ATTCTT
259 T-ATAGAATCAAAGTTTATCTCTTAAATAAGACAAACATAAATAGTCAAACTAATCCCTATTCTT
* * * * *
194976 TTCAGGATTAGGCACCATAAACTTAGT-CTTCACATAAGGATGCATGATATTGATGCTTTGGTTT
323 TTCAAGATTAGGCACCAT-AACATAGTAATT-ACATAAGGATACACGATATTGATGCTTTGGTTT
* ** * *
195040 CGTATGAAAGGC-TTTATTCCCACCAATTTTTATA-ATGTCTAAGTTCGCGCCTCAAATATGATA
386 CGAAACAAAGGCTTTTATTCCCACCAATTTTTATATA-GTCTAAGTTCGAGCCTCAAATATGACA
*
195103 AACATGGATTCTAGTAATCATCTT
450 AACATGGATTCGAGTAATCATCTT
* * **
195127 CATTCACTTTGGGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATTCTATTGATGATT
1 CATTCACTTTGTGATTAGGCACTATAAACACATTTTCCTCATTAGGATAAATGATATTGATGATT
195192 TTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATA
66 TT-TTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCAT-CCTTAAATA
* * * * * *
195257 AGATAAGCATTGATTCTTGTAATAGTCTCTATTCTTTTCAACATTGGCAACTAAAAACACATTCC
129 AGGTAAGCATTGATTCTTGTAATAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTTC
** * * * * * *
195322 CTTCGA-TAGGATACTTGACATTGATGCTTTGATGTCGCAAGAAAAGCTTTTCTTTCTATCATCT
194 CTTC-ATTAGGATACAAGACATTGAAGCTTTGGTGTCACAAGAAAAACTTTTCTTTCTA-CCTTT
* * *
195386 TTGATTGAATCAAAATTTATCTCTTAAATAAGACAAAC
257 TTTATAGAATCAAAGTTTATCTCTTAAATAAGACAAAC
195424 TGTGAAAGCT
Statistics
Matches: 652, Mismatches: 102, Indels: 31
0.83 0.13 0.04
Matches are distributed among these distances:
472 1 0.00
473 155 0.24
474 302 0.46
475 183 0.28
476 11 0.02
ACGTcount: A:0.32, C:0.18, G:0.14, T:0.37
Consensus pattern (473 bp):
CATTCACTTTGTGATTAGGCACTATAAACACATTTTCCTCATTAGGATAAATGATATTGATGATT
TTTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCTTAAATAAG
GTAAGCATTGATTCTTGTAATAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTTCCT
TCATTAGGATACAAGACATTGAAGCTTTGGTGTCACAAGAAAAACTTTTCTTTCTACCTTTTTTA
TAGAATCAAAGTTTATCTCTTAAATAAGACAAACATAAATAGTCAAACTAATCCCTATTCTTTTC
AAGATTAGGCACCATAACATAGTAATTACATAAGGATACACGATATTGATGCTTTGGTTTCGAAA
CAAAGGCTTTTATTCCCACCAATTTTTATATAGTCTAAGTTCGAGCCTCAAATATGACAAACATG
GATTCGAGTAATCATCTT
Found at i:196205 original size:33 final size:32
Alignment explanation
Indices: 196168--196235 Score: 91
Period size: 33 Copynumber: 2.1 Consensus size: 32
196158 CGTTACAAGC
* **
196168 CAATGTATCGATATATTTTATGGTGTATTGATA
1 CAATGTATCGATACATACTAT-GTGTATTGATA
*
196201 CAATGTATCGATACATACTGTGTGTATTGATA
1 CAATGTATCGATACATACTATGTGTATTGATA
196233 CAA
1 CAA
196236 GTTTGGCTAT
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
32 14 0.45
33 17 0.55
ACGTcount: A:0.32, C:0.10, G:0.18, T:0.40
Consensus pattern (32 bp):
CAATGTATCGATACATACTATGTGTATTGATA
Found at i:204691 original size:31 final size:30
Alignment explanation
Indices: 204646--204703 Score: 82
Period size: 31 Copynumber: 1.9 Consensus size: 30
204636 AAAATCAAAT
*
204646 ACAAAGAGCTTTGAAAATTATAACAACATGA
1 ACAAAGAGCTTTGAAAAATATAA-AACATGA
204677 ACAAA-AGCTCTTGAAAAATATAAAACA
1 ACAAAGAGCT-TTGAAAAATATAAAACA
204704 CTTTGATCTT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
30 8 0.32
31 17 0.68
ACGTcount: A:0.55, C:0.14, G:0.10, T:0.21
Consensus pattern (30 bp):
ACAAAGAGCTTTGAAAAATATAAAACATGA
Found at i:204993 original size:33 final size:32
Alignment explanation
Indices: 204951--205018 Score: 100
Period size: 33 Copynumber: 2.1 Consensus size: 32
204941 CGTTACAAGC
**
204951 CAATGTATCGATACATTTTATGGTGTATCAATA
1 CAATGTATCGATACATACTAT-GTGTATCAATA
*
204984 CAATGTATCGATACATACTATGTGTATCGATA
1 CAATGTATCGATACATACTATGTGTATCAATA
205016 CAA
1 CAA
205019 GTTTGGCTAC
Statistics
Matches: 32, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
32 13 0.41
33 19 0.59
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
Consensus pattern (32 bp):
CAATGTATCGATACATACTATGTGTATCAATA
Found at i:205113 original size:20 final size:20
Alignment explanation
Indices: 205071--205120 Score: 64
Period size: 20 Copynumber: 2.5 Consensus size: 20
205061 TTTTTTTTAA
*
205071 GTATCGATACAATGCAACAT
1 GTATCGATACAATGAAACAT
* **
205091 GTATCGATACAATTAAATGT
1 GTATCGATACAATGAAACAT
205111 GTATCGATAC
1 GTATCGATAC
205121 TTTTCAGGGT
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.38, C:0.16, G:0.16, T:0.30
Consensus pattern (20 bp):
GTATCGATACAATGAAACAT
Found at i:206734 original size:475 final size:476
Alignment explanation
Indices: 205389--209246 Score: 3961
Period size: 474 Copynumber: 8.2 Consensus size: 476
205379 CAAGATCCTA
* * **
205389 ACAAAC-TGGAATAGTCATGCTAATCCCCATTCTTTTCAGGATTAGGCACTATAATTATAGTCTT
1 ACAAACAT-GAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTT
* * * * ** * *
205453 CTC-TAAGGTTACACAATATTAATTCTTTGGTTTCGCAAGAAAGCCTTTTTTCTCACCAATTTTT
65 CTCATAAGGATACACGATATTGATGCTTTGGTTTCATAAGAAAGGCTTTCTTCTCACCAATTTTT
* ** * * * *
205517 ATAAAGGCAAAGTT-GATGCCACAAATGAGACAAACATGGATTCTAGTAAAGATCTTCTTTCATT
130 GTAAACTCTAAGTTCG-TGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATT
* * * * *
205581 TTGTGATTAGGCATTATAAACACATTCTCTTTATTAGGATAAATGGTATTGACGATTTTCTTTTG
194 TTGTGATTAGGCACTATAAACACATTCTCCTAATTAGGATAAATGATATTGATGATTTTCTTTTG
* * * * * **
205646 CATGAAAATCTTTT-TTTTCCCTATATTGCTTAAAATCAAAATTCAACCATTAAATTTGACAAGC
259 CATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAATTCATCCCTTAAATAAGACAAGC
* * * * * * * * *
205710 TTCGATTCTCATAATAGTCGCAATTCATTTCAAGGTTGGGAACCAAGAACACATTCTCTTCATTA
324 ATCGATTCTCATAACAATCTCTATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTA
* * * * * *
205775 AGATACTTGACACTGAGGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCATCGA-TTTTGATAGA
389 GGATACATGACATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCA-CCATTTTTGATAGA
* * *
205839 ATCAAAATATGTCTTTTAAATAAG
453 ATCAAAGTTTGTCTCTTAAATAAG
* *
205863 ACAAACATGAATACTCATACTAATCCCTA-T-TTTT-AGGATTAGGCACCATAAACATAGTCTTC
1 ACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTC
* * * ** * * *
205925 TCATAAAGATACACGATACTAATTATTTTGTTTCATAGGAAAGGCTTTCTTC-CTACCAATTTTC
66 TCATAAGGATACACGATATTGATGCTTTGGTTTCATAAGAAAGGCTTTCTTCTC-ACCAATTTTT
* * * *
205989 GTAAAGTCAAAGTCCGTGCCTCAAATGAAACAAA-A--G----T-G----GATCTTCATTCATTT
130 GTAAACTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTT
* * * * * ** ** *
206042 TGCGATTAGGCATTGTAAACACATTATCTTCCTTAGGATAAATGATATTGACAATTTTCTTTTGT
195 TGTGATTAGGCACTATAAACACATTCTCCTAATTAGGATAAATGATATTGATGATTTTCTTTTGC
* * * * * * ** * * *
206107 ATGGAAATCTTTTTTTTGCCTTTTTTTTTCATAAAATC-ATGTTCATCTCTTAAATAAGGCAAAC
260 ATGAAAATCTTTTCTTTGCC-CTATTTTCCTTAAAATCAAAATTCATCCCTTAAATAAGACAAGC
* * ** * * * * * * *
206171 ATTGACTCTTGTCATAGTATCCATTCTTTTCATGA-TGGGAACCAAAAAACATATTCCCTTCATT
324 ATCGATTCTCATAACAATCTCTATTCTTTTCAAGATTGGGAACC-AAAAACACATTCCCTTCATT
* * * * * * * * *
206235 ATGATACATGACATTAATGCTTTGGTGTCGCAAGAAAAGTTTTTCTTTCTATCGTTTCTGGTAGA
388 AGGATACATGACATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGA
*
206300 ATCAAAGTTTGTCTCATAAATAAG
453 ATCAAAGTTTGTCTCTTAAATAAG
* * * * * * * * *
206324 ACAAACATGAACACTCATACAAATCCCCATTATTTTAAGGTTTAGGAACCATGAATATAGTCTTC
1 ACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTC
* * * * *
206389 TCATAAGGATATAGGATATTGATGCTTTGATTTCATAGGAATGGCTTTCTTCTCACCAATTTTTG
66 TCATAAGGATACACGATATTGATGCTTTGGTTTCATAAGAAAGGCTTTCTTCTCACCAATTTTTG
* * *
206454 TAAACTATAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCAGTCACTTT
131 TAAACTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTT
* **
206519 GGGATTAGGTGCTATAAACACATTCTCCTAATTAGGATAAATGATATTGATGATTTT-TTTTAG-
196 GTGATTAGGCACTATAAACACATTCTCCTAATTAGGATAAATGATATTGATGATTTTCTTTT-GC
* *
206582 GTGAAAATCTTTTCTTTTCCCTATTTTCCTTAAAATCAAAATTCATCCCTTAAATAAGACAAGCA
260 ATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAATTCATCCCTTAAATAAGACAAGCA
* * * * * *
206647 TTGATTCTCATAACGATCTCTATTCCTTTCAAGATTGGGAACAAAAAATAAATTCCCTTCATTAG
325 TCGATTCTCATAACAATCTCTATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAG
* * * * * ** *
206712 AATACATGACATTAATGCTTTGGTGTTAAAAGAAAAGTTTTTCAGTCCACCATTTTTGATAGAGT
390 GATACATGACATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAAT
* *
206777 GAAAGTTTGTCTCTTAAATAGG
455 CAAAGTTTGTCTCTTAAATAAG
* * * *
206799 ACAAACATAAATGGTCATACTAATCCCTATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTT
1 ACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTC
* * *
206864 TCATAAGGATACACGATATTAATTCTTTGG-TTCTATAAGAAAAG-TTCTCTTCCTC-CCAATTT
66 TCATAAGGATACACGATATTGATGCTTTGGTTTC-ATAAGAAAGGCTT-TCTT-CTCACCAATTT
* * ** * * * **
206926 TTGTAAAGTCTAAGTTCGTG-CTGCAAATAAGATGAATATTGATTCTAGTAATCATCTTTTTTCA
128 TTGTAAACTCTAAGTTCGTGCCT-CAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCA
* * * * *
206990 TTTTATGATTAGGTACAATAAACACATTCTCCTAACTAGGATAAATTATATTGATGATTTTCTTT
192 TTTTGTGATTAGGCACTATAAACACATTCTCCTAATTAGGATAAATGATATTGATGATTTTCTTT
* * * * *
207055 TGCATAAAAATCTTTTGTTTGCCTTATTTTCCTTAAAATCAAAATTTATCCTTTAAATAAGACAA
257 TGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAATTCATCCCTTAAATAAGACAA
* * * * * * *
207120 GCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTAGGAACCAAAGACAAATTCCTTTCAT
322 GCATCGATTCTCATAACAATCTCTATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCAT
* * * * * * *
207185 TAGGATACATGTCATTGATGCTTTGGTGTCGCAAAAAAAGATTTTCTTTCAATCGTTTTTGATAG
387 TAGGATACATGACATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCATTTTTGATAG
207250 AATCAAAGTTTGTCT-TCTAAATAAG
452 AATCAAAGTTTGTCTCT-TAAATAAG
* * * * *
207275 ACAAACATAAATAGTCATGCTAATCCCCTTTCTTTTCAGGATTAGGCACCATAAACATATTCTTT
1 ACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTC
* * * *
207340 TCATAAGGATACATGATATTTATGCTTTGGTTTCGTAAGAAACGCTTTCTTC-CTACCAATTTTT
66 TCATAAGGATACACGATATTGATGCTTTGGTTTCATAAGAAAGGCTTTCTTCTC-ACCAATTTTT
* ** * * * * * * * *
207404 GTAATCTCTAAGTTTATGCCTTAAAAGAGATAAACAAGAATTCTAGTAGTGATCTT-AGTCATAT
130 GTAAACTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTT
* * * *
207468 TGTGACTAGGTACTAT-AACTCATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGC
195 TGTGATTAGGCACTATAAACACATTCTCCTAATTAGGATAAATGATATTGATGATTTTCTTTTGC
* * ** *
207532 ATGGAAATCTTTTCTTTGTCCTATTTTCCTTAAAATCAAAATTTGTCCCATAAATAAGACAAGCA
260 ATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAATTCATCCCTTAAATAAGACAAGCA
** * * * * *
207597 TCGATTCTTGTAACAGTCTCTTTTCTTTTCAAGATTGGGAACGAAAAATATATTCCCTTCATTAG
325 TCGATTCTCATAACAATCTCTATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAG
* * * * * *
207662 GATACAAGACATTGATGCTTTGGTGTCACAAGAAAACCTTTACATTCCACCATTTTTTATAGAGT
390 GATACATGACATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAAT
** *
207727 TTAAGTTTGCCTC-TAAATAAG
455 CAAAGTTTGTCTCTTAAATAAG
* * * * * *
207748 GCAAACATGAATATTCATACAAATACCCATTCTTTTCAGGACTAGGCACCATTAACATAGTCTTC
1 ACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTC
* *
207813 TCATAAGGATGCATGATATTGATGCTTTGGTTTCATAAGAAAGGCTTTCTTCTC-CCTAATTTTT
66 TCATAAGGATACACGATATTGATGCTTTGGTTTCATAAGAAAGGCTTTCTTCTCACC-AATTTTT
* * * *** * * *
207877 GTCAAGTCTAAGTTCGTACCTCAAATGAGATGCATATGGACTCTAATAATGATCTTCATTCATTT
130 GTAAACTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTT
* *
207942 TGTGATTAGGCACTATAAACACAATCTCCTCAA-TATGATAAATGATATTGATGATTTT-TTTTG
195 TGTGATTAGGCACTATAAACACATTCTCCT-AATTAGGATAAATGATATTGATGATTTTCTTTTG
* * * * *
208005 CATGAAAATATTTTCTTTGCCCTATTTTCCCTAAAA-CAAAAATTCTTCCCTTAAATATGACAAA
259 CATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATC-AAAATTCATCCCTTAAATAAGACAAG
* * * *
208069 CATCAATTCTCGTAACAATCT-TCATTCTTTTCAAGATTAGGAACCAACAACACATTCCCTTCAT
323 CATCGATTCTCATAACAATCTCT-ATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCAT
* * *
208133 TAGGAT-CATGACATTGATAG-TTTGGAT-TCAAAAGAAAAGCTTTTCTTTCCACCATTATTAAT
387 TAGGATACATGACATTGAT-GCTTTGG-TGTCACAAGAAAAGCTTTTCTTTCCACCATTTTTGAT
208195 AGAATCAAAGTTTGTCTCTTAAATAAG
450 AGAATCAAAGTTTGTCTCTTAAATAAG
* * * * * * ** * *
208222 ACAAACATGAATACTCATCCTAATCCTCATTCTTTTTAGGATTAGGCAGCAAAAACACGGCCATC
1 ACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTC
* * *** * * **
208287 TCATTAGGATACATGATATTGATGCTTTGGTTTTGCAAGAAAGGCTTTTTTCCCATTAATTTTTG
66 TCATAAGGATACACGATATTGATGCTTTGGTTTCATAAGAAAGGCTTTCTTCTCACCAATTTTTG
* * * ** * *
208352 TAAAGTGC-AAGTTCATGCCTCAAATGAAATGAACATGGATTCTAGAAATGTTCTTCATTCATTT
131 TAAACT-CTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTT
* ** * * * *
208416 GGCAATTAGG-GCTATAAACACATTCTCCTCAA-TGGGATAAATAATATTTATGATTTTCTTTTG
195 TGTGATTAGGCACTATAAACACATTCTCCT-AATTAGGATAAATGATATTGATGATTTTCTTTTG
* * * * *
208479 CATGAAAAACTTTTCTTTGCCTTATTTTCCTTAAAATAAAAATTCTTCCCTTAAATAAGACATGC
259 CATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAATTCATCCCTTAAATAAGACAAGC
* * * * *
208544 ATCGATTCCCGTAACAATCTCCATTCTTTTCAAGA-TGAGGAACCAAAAACATATTCCCTTTATT
324 ATCGATTCTCATAACAATCTCTATTCTTTTCAAGATTG-GGAACCAAAAACACATTCCCTTCATT
* * * * *
208608 AGGATACTTGACATTGATGCTTTGGTGTCATAAGGAAAGCTTTTCTTTCCACC-GTTTTGATGGA
388 AGGATACATGACATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGA
*
208672 ATCAAAGTTAGTCTCTTAAATAAG
453 ATCAAAGTTTGTCTCTTAAATAAG
** * *
208696 ACAAACATGAATAGTCATACTAATCCTTATTC-ATTCA-GATTTAGGCACCATAAACATAGTTTT
1 ACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGA-TTAGGCACCATAAACATAGTCTT
* * * * * * *
208759 CTCATAAGGATACCCAATATTGACGCTTTGGTTTCGTGAGAAAGGCTTTCATCCCACCAATTTTT
65 CTCATAAGGATACACGATATTGATGCTTTGGTTTCATAAGAAAGGCTTTCTTCTCACCAATTTTT
208824 GT-AACGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATT
130 GTAAAC-TCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATT
** * * * *
208888 TTGTGAACAAGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTAATGATTTTTTTTTT
194 TTGTGATTAGGCACTATAAACACATTCTCCTAATTAGGATAAATGATATTGATGA-TTTTCTTTT
* * * * *
208953 GCGTGAAAATCTTTT-TAGTGCCCTATTTTTCATAAAATCAAAATTCATCCCTTAAATATGACAA
258 GCATGAAAATCTTTTCT-TTGCCCTATTTTCCTTAAAATCAAAATTCATCCCTTAAATAAGACAA
* * * * * * **
209017 GTAAT-GATTCTAATAACAATCTTTATTCTTTTCAAGATTAGGAACGAACAATGCATTCCCTTCA
322 G-CATCGATTCTCATAACAATCTCTATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCA
* * * *
209081 TTAGGATACATGACATTGATGCTTTGATGTCGCAAGAAAAACTTTTCTTTCAACCATTTTTGATA
386 TTAGGATACATGACATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCATTTTTGATA
* *
209146 AAATCAAAGTTTGTCTCTTTAATAAG
451 GAATCAAAGTTTGTCTCTTAAATAAG
* * * * *
209172 ACAAATATGAATAGTTATCCTAAGCCCTATTCTTTT-AGGATTAGGCACCATAAACATAGTCTTC
1 ACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTC
209236 TCATAAGGATA
66 TCATAAGGATA
209247 AATGATTGTT
Statistics
Matches: 2796, Mismatches: 517, Indels: 140
0.81 0.15 0.04
Matches are distributed among these distances:
460 91 0.03
461 160 0.06
462 13 0.00
463 4 0.00
464 105 0.04
465 3 0.00
467 1 0.00
469 1 0.00
471 30 0.01
472 86 0.03
473 392 0.14
474 793 0.28
475 607 0.22
476 499 0.18
477 11 0.00
ACGTcount: A:0.32, C:0.18, G:0.13, T:0.37
Consensus pattern (476 bp):
ACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTC
TCATAAGGATACACGATATTGATGCTTTGGTTTCATAAGAAAGGCTTTCTTCTCACCAATTTTTG
TAAACTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTT
GTGATTAGGCACTATAAACACATTCTCCTAATTAGGATAAATGATATTGATGATTTTCTTTTGCA
TGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAATTCATCCCTTAAATAAGACAAGCAT
CGATTCTCATAACAATCTCTATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGG
ATACATGACATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATC
AAAGTTTGTCTCTTAAATAAG
Found at i:217704 original size:18 final size:17
Alignment explanation
Indices: 217673--217707 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
217663 TTTGAAAAAG
*
217673 GAAAAAGGGGGAGAGAT
1 GAAAAAGGGAGAGAGAT
217690 GAAAAGAGGGAGAGAGAT
1 GAAAA-AGGGAGAGAGAT
217708 ATTTTGTAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.49, C:0.00, G:0.46, T:0.06
Consensus pattern (17 bp):
GAAAAAGGGAGAGAGAT
Found at i:218468 original size:20 final size:19
Alignment explanation
Indices: 218445--218497 Score: 70
Period size: 19 Copynumber: 2.7 Consensus size: 19
218435 CACACCCAGA
* *
218445 TGTATCGATACTTATTACTT
1 TGTATCGATACATATT-CAT
*
218465 TGTATCGATACATGTTCAT
1 TGTATCGATACATATTCAT
218484 TGTATCGATACATA
1 TGTATCGATACATA
218498 CTAAAATATA
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
19 15 0.52
20 14 0.48
ACGTcount: A:0.28, C:0.15, G:0.13, T:0.43
Consensus pattern (19 bp):
TGTATCGATACATATTCAT
Found at i:218488 original size:19 final size:20
Alignment explanation
Indices: 218445--218516 Score: 74
Period size: 20 Copynumber: 3.6 Consensus size: 20
218435 CACACCCAGA
* *
218445 TGTATCGATACTTATTACTT
1 TGTATCGATACATATTACAT
*
218465 TGTATCGATACATGTT-CAT
1 TGTATCGATACATATTACAT
* * *
218484 TGTATCGATACATACTAAAA
1 TGTATCGATACATATTACAT
*
218504 TATATCGATACAT
1 TGTATCGATACAT
218517 GAAATTGGCA
Statistics
Matches: 43, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
19 16 0.37
20 27 0.63
ACGTcount: A:0.33, C:0.15, G:0.11, T:0.40
Consensus pattern (20 bp):
TGTATCGATACATATTACAT
Found at i:218587 original size:20 final size:20
Alignment explanation
Indices: 218544--218596 Score: 61
Period size: 20 Copynumber: 2.6 Consensus size: 20
218534 AAACTGACAT
* * *
218544 TGTATCGATAGATGAAGGAT
1 TGTATCGATACATGAAGAAA
*
218564 TGTATCGATACATGATGAAA
1 TGTATCGATACATGAAGAAA
*
218584 TGTATTGATACAT
1 TGTATCGATACAT
218597 TGAGCCGAAT
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.36, C:0.08, G:0.23, T:0.34
Consensus pattern (20 bp):
TGTATCGATACATGAAGAAA
Found at i:222553 original size:475 final size:476
Alignment explanation
Indices: 220761--225272 Score: 5126
Period size: 475 Copynumber: 9.5 Consensus size: 476
220751 CATCACATTC
* *
220761 ATTCTCCCCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAAACTATTCTTTGCCTT
1 ATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAAACTATTCTTTGCCCT
* * * * * *
220826 ATTTTCCTTAAAATAAAAATTCTTCCCTTAAATAAGACAAGTATCTATTCTCATAATAGCCTCCA
66 ATTTTCCTTAAAATCAAAATTCATCCCTTAAATAAGACAAGCATCGATTCTCATAACAGTCTCCA
220891 CA-CTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTT
131 -ATCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTT
* * * * *
220955 GGTATCCCAAGAAAAGCTTTTCTTTCCA-TCGTTTTTGATAGAATCAAAGTTTGTCTTTTAAATA
195 GGTGTCGCAAGAAAAGCTTTTCTTTCAACT-GTTTTTGATAGAATCAAAGTTTATCTCTTAAATA
* * * * * **
221019 AGACAAACATGAATAGTCATAGTAATCCCCATTGTTTTTAGGATAAGACGGCATAAACATAGTCT
259 AGACAAACATGAATAGTCATACTAATCCCCATTCTTTTGAGGATTAGGCACCATAAACATAGTCT
* * * * * *
221084 TCTCATAATGATACAAGATATTGACGCTTTGGTTTTGCAAGAAAGGCTTTCTTTCCACTAATTTT
324 TCTCATAAGGATACACGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCACCAATTTT
** * *
221149 TGTAAAGAGTAAGTTCGTGCCTCAAATGAGACAAACAT-AGATTCTAGTAATGAACTTCATTCAT
389 TGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGA-ATTCTAGTAATGATCTTCATTCAC
* *
221213 TTTGTGATTAGGTACTATAAACAA
453 TTTGTGATTAGGCACTATAAACAG
* * * * * *
221237 ATTCTCCTCGTTAGGAGAAATGATACTGATGATTTTCTTTTACAT-GAAAATCTTTTCTTTTCCC
1 ATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAAA-CTATTCTTTGCCC
* * * * * * *
221301 TATTTTCCTTAAAATCAAAGTTCATCTCTTAAATAAGGCAAGCATTGATCCTCGTAACAGTCCCC
65 TATTTTCCTTAAAATCAAAATTCATCCCTTAAATAAGACAAGCATCGATTCTCATAACAGTCTCC
** * * * **
221366 AATCTACTCAAGATTGGGAGCCAAAAACATATTCCTTTCATTAGGATACATGATTTTGACT-CTT
130 AATCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGA-TGCTT
* * * * ** * * *
221430 TGGCGTCACAAGAAAAGCATTGCTTTCAACCATTTTTGATAGAATCACACTTTATCTCTCAAATA
194 TGGTGTCGCAAGAAAAGCTTTTCTTTCAACTGTTTTTGATAGAATCAAAGTTTATCTCTTAAATA
* * * * *
221495 AAACAAACATGAATAGTCATACTAATCGCCATTCACTTT-AGGATTAGGCACCATAAACTTAGTT
259 AGACAAACATGAATAGTCATACTAATCCCCATTC-TTTTGAGGATTAGGCACCATAAACATAGTC
* * ** *
221559 TTCTC-TTAGGAT-CACGATATTAATGCTTTGGTTTCATAAGAAAGGCTTTCTTCCTACCAATTT
323 TTCTCATAAGGATACACGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCACCAATTT
** * *
221622 TTACAAAGTCTAAGTTCGTGCCTCAAATGTGACAAACATCG-ATTCTAGTAATGATCTTTATTCA
388 TTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACAT-GAATTCTAGTAATGATCTTCATTCA
* *
221686 CTTTGTCATTTA-GCACTATAAA-TG
452 CTTTGTGA-TTAGGCACTATAAACAG
* *
221710 CATTCTCCTCATTAGGATAAATGATATTGATGATTTGCTTTTGCATGGAAAACTATTCTTTGCCT
1 -ATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAAACTATTCTTTGCCC
* * * * **
221775 TATTTTCCTTAAAATCAAAATCCATCCCTTAAATAATACATGCACCGATTCTCGCAACAGTCTCC
65 TATTTTCCTTAAAATCAAAATTCATCCCTTAAATAAGACAAGCATCGATTCTCATAACAGTCTCC
*
221840 -ATACTTTTCAAGATT-GGAAGCCAAAAACACATTCCCTTCATTAGGATAGATGACATTGATGCT
130 AAT-CTTTTCAAGATTGGGAA-CCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCT
* * * * * *
221903 TTGGTATCGCAAGAAAAGCTTTTCTTTCCATTGTTTTTGGTAGAATCAAAGTCTGTCTCTTAAAT
193 TTGGTGTCGCAAGAAAAGCTTTTCTTTCAACTGTTTTTGATAGAATCAAAGTTTATCTCTTAAAT
* * ** * * ***
221968 AAGACAAACATAAATAGTTATACTAATTTCCATTCTTTTCAGGATAAGATGCCATAAACATAGTC
258 AAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTGAGGATTAGGCACCATAAACATAGTC
* * * *
222033 TTCTCATAAGGATGCAGGATATTGACGCTTTGGTTTCGCAAGAAAGACTTTCTTCCCACCAATTT
323 TTCTCATAAGGATACACGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCACCAATTT
** * * * *
222098 TTGTAAAGAGTAAGTTCATGCCTCAAATGAGACAAACATGAATTCTAGCACTGAACTTCATTCAC
388 TTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGAATTCTAGTAATGATCTTCATTCAC
222163 TTTGTGATTAGGCACTATAAACAG
453 TTTGTGATTAGGCACTATAAACAG
* * * * *
222187 ATTCTCCTCGTTAGGAGAAATGATATTGAT-ATTTTTTTTTTGCATGGAAATCGT-TTCTTTTCC
1 ATTCTCCTCATTAGGATAAATGATATTGATGA-TTTTCTTTTGCATGGAAAAC-TATTCTTTGCC
* * * * * *
222250 CTATATT-CTTAAAATTCAAAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCGTAATAGTC-
64 CTATTTTCCTTAAAA-TCAAAATTCATCCCTTAAATAAGACAAGCATCGATTCTCATAACAGTCT
** * * * ** *
222313 CCAATCTACTCAAGATTGGGAGCTAAAAACATATTCTTTTCATTAGGATACATGACATGGACT-C
128 CCAATCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGA-TGC
* * * *
222377 TTTGGTGTCACAAGAAAAGCATTACTTTCAACTGTTTTTGATAGAATCACAA-TTTATCTCTCAA
192 TTTGGTGTCGCAAGAAAAGCTTTTCTTTCAACTGTTTTTGATAGAATCA-AAGTTTATCTCTTAA
* *
222441 ATAAGACAAACATGAATAGTCATACTAATCGCCATTCACTTT-AGGATTAGGCACCATAAACATA
256 ATAAGACAAACATGAATAGTCATACTAATCCCCATTC-TTTTGAGGATTAGGCACCATAAACATA
* * * * * *** *
222505 GTTTTCTCTTAAGGATACACGATATTAATGCTTTGGTTTCGTAAGAAAGGCTTTTTTCTTGCTAA
320 GTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCACCAA
* * * * * * *
222570 TTTTTGTAAAGTCCAAGTTCATGCCTCAAATGTGATAAACATGGATTTTAGTATTGATCTTCATT
385 TTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGAATTCTAGTAATGATCTTCATT
* * *
222635 CACTTTGTCATTTGGCATTATAAAC-G
450 CACTTTGTGATTAGGCACTATAAACAG
** *
222661 CATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAAACTATTCTTCACCA
1 -ATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAAACTATTCTTTGCCC
* * * * * *
222726 TATTTTCCTTAAAATCAAAATTCTTCCATCAAATAAGA-AATGCACCGATTCTCTTTACAGTCTC
65 TATTTTCCTTAAAATCAAAATTCATCCCTTAAATAAGACAA-GCATCGATTCTCATAACAGTCTC
* * *
222790 C-ATACTTTTTAATATTGGGAACCAAAAACACACT-CCTTCATTAGGATACATGACATTGATGCT
129 CAAT-CTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCT
* * * * * * * *
222853 TTGGTATCGTAAGAAAAGCTTTTTTTTCAGC--ATTTTGGTAGAATCAAAGTATGTCTCTTAAAT
193 TTGGTGTCGCAAGAAAAGCTTTTCTTTCAACTGTTTTTGATAGAATCAAAGTTTATCTCTTAAAT
* * * * *
222916 AAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTTAGGATAAGACGCCATAAAAATAGTC
258 AAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTGAGGATTAGGCACCATAAACATAGTC
* * * * ** * * *
222981 TTCGCATAAGGATATAGGATATTAATGCTTCAGTTTCACAAGAAAGGCTTTCTTCCTACCAAGTT
323 TTCTCATAAGGATACACGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCACCAATTT
** * *
223046 TTGTAAAGAGTAAGTTCATGCCTCAAATGAGACAAACAT-AGATTCTAGTAATGAACTTCATTCA
388 TTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGA-ATTCTAGTAATGATCTTCATTCA
* * *
223110 TTTTGTGATTAGGCACTACAAATAG
452 CTTTGTGATTAGGCACTATAAACAG
* * * * * * * *
223135 ATTCTCCTCGTTAGGAGAAATGATATTGATAATTTTCTTTCGCATGGAAATCT-TTTTTTTCTCT
1 ATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAAACTATTCTTTGCCCT
* * * * * * * *
223199 ATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGGCAACCATTGATTCTCCTAGCTGTCCCCA
66 ATTTTCCTTAAAATCAAAATTCATCCCTTAAATAAGACAAGCATCGATTCTCATAACAGTCTCCA
** * * * * *
223264 ATCTACTCAAGATTAGGAGCCAAAAACATATTCCTTTCATTAGGAAACATGACATTGACT-CTTT
131 ATCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGA-TGCTTT
* * * *
223328 GGTGTCGCAAGAAAAG-TATTACTTTCAATTGTTTTTGATAGAATCATAGTTTATCTCTCAAATA
195 GGTGTCGCAAGAAAAGCT-TTTCTTTCAACTGTTTTTGATAGAATCAAAGTTTATCTCTTAAATA
* * *
223392 AGAAAAACATGAATAGTCATACTAATCCCGATTCTTTTGAGGATTAGGCACCATAAACATAGCCT
259 AGACAAACATGAATAGTCATACTAATCCCCATTCTTTTGAGGATTAGGCACCATAAACATAGTCT
* * *
223457 TCTTATAAGGATACACGATATTGATGCTTTGGCTTT-GCATGAAAGGCTTTCTTCCTACCAATTT
324 TCTCATAAGGATACACGATATTGATGCTTTGG-TTTCGCAAGAAAGGCTTTCTTCCCACCAATTT
* * * * * *
223521 ATATAAAGTCTAAGTTCATGCCTCAAATGTGACAAACATGGATTCTAGTAATGATCTTTATTCAC
388 TTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGAATTCTAGTAATGATCTTCATTCAC
* *
223586 TTTGTCATTAGGCACTATAAACAA
453 TTTGTGATTAGGCACTATAAACAG
*
223610 ATTCTCCTCAATAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAAACTATT-TTTGCCCT
1 ATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAAACTATTCTTTGCCCT
* ** ** * * *
223674 ATTTTTCTTAAAATCAAAATTTTTCCCTTAAATAAGACGTGCATCGATTCTCGTAACAGACTTCA
66 ATTTTCCTTAAAATCAAAATTCATCCCTTAAATAAGACAAGCATCGATTCTCATAACAGTCTCCA
* * * * *
223739 TTCTTTTCAAGATTAGGAACCAAAAACACATTCTCTTTATTAGGATATATGACATTGATGCTTTG
131 ATCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTG
* * * * *** * * *
223804 GTGTCACAGGAAAAGCTTTTCTTTCGACCGTTTCAAATAAAATCAATGTTTATCCCTTAAATAAG
196 GTGTCGCAAGAAAAGCTTTTCTTTCAACTGTTTTTGATAGAATCAAAGTTTATCTCTTAAATAAG
* * *
223869 ACAAACACGAATAGTCATACTAATCCCTATTCTTTTGAGGATTAGGCACCATAAACATAGCCTTC
261 ACAAACATGAATAGTCATACTAATCCCCATTCTTTTGAGGATTAGGCACCATAAACATAGTCTTC
* * * *
223934 TCATAAGGATACACGATATTAATGCTTTGGTTTCGCATGAAAGGCTTTCTTCCCACCAATTTATA
326 TCATAAGGATACACGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCACCAATTTTTG
* * * * * *
223999 TAAAGTCTAAGTTCGTGCCTCAAAAGTGACAAACGTGGATTCTAGTGATGATCTTCATTCATTTT
391 TAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGAATTCTAGTAATGATCTTCATTCACTTT
* * *
224064 GTGATTAGGCAGTATACACAC
456 GTGATTAGGCACTATAAACAG
* * * *
224085 ATTCTCCTCGTTAAGATAAATGATATTGATGATTTTCTTTTGCATGGAAAAACTTTTCTTTGCCT
1 ATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGG-AAAACTATTCTTTGCCC
* * * * ** * * *
224150 TATTTCCCTTAAAAGCAAAGTTAATCCCAAAAATAAGACAAGCATTGATTCTCACAACAGTCTCT
65 TATTTTCCTTAAAATCAAAATTCATCCCTTAAATAAGACAAGCATCGATTCTCATAACAGTCTCC
* * * * *
224215 ATTTTTTTCAAGATTAGGAACCAAAAACAAATTCCCTTCATTAGGATACATTACATTGATGCTTT
130 AATCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTT
* ** * * ** * *
224280 AGTGTCGTGAGAAAAGCTTTTTTTTCCACCATTTTTGATAGAATCAAAGTCTATCTTTTAAATAA
195 GGTGTCGCAAGAAAAGCTTTTCTTTCAACTGTTTTTGATAGAATCAAAGTTTATCTCTTAAATAA
* * *
224345 GACAAACATGAATAGTTATACTAATCCCCGTTCTTTTGAGTATTAGGCACCATAAACATAGTCTT
260 GACAAACATGAATAGTCATACTAATCCCCATTCTTTTGAGGATTAGGCACCATAAACATAGTCTT
* * *
224410 CTCATAAGGATACACGATATTGATGCTTTGGTTTTGCAAGAAAGGCTTTCTTCCCACCAAATTTC
325 CTCATAAGGATACACGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCACCAATTTTT
* *
224475 GTAAAGTCTAAGTTCGTGCCTTAAATGAGACAAACAT-AGATTCTAGTAAAGATCTTCATTCACT
390 GTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGA-ATTCTAGTAATGATCTTCATTCACT
* *
224539 TTGTCATTAGGCACTATAAACAT
454 TTGTGATTAGGCACTATAAACAG
*
224562 ATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAAACTATTCTTTGCCTT
1 ATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAAACTATTCTTTGCCCT
** * * * * *
224627 ATTTTCCTTAAAATCAAAATTTTTCCCTT-AATAAGATATGCATCGATTCTCATAACGGCCACC-
66 ATTTTCCTTAAAATCAAAATTCATCCCTTAAATAAGACAAGCATCGATTCTCATAACAGTCTCCA
* * * * * * *
224690 ATACTTTTTAGGATTGAGAGCTAAAAACACATTCCCTTCATTAGGATACATTACTTTGATGCTTT
131 AT-CTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTT
* ** * * *
224755 GGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTTATAAAATCAAAGTTTGTCTCTTAAATAA
195 GGTGTCGCAAGAAAAGCTTTTCTTTCAACTGTTTTTGATAGAATCAAAGTTTATCTCTTAAATAA
* * * * * *
224820 GATAAACATGAATAGTCATACTAATCCCCATTCTTATCAAGATTTGGCACCATAAACACAGTCTT
260 GACAAACATGAATAGTCATACTAATCCCCATTCTTTTGAGGATTAGGCACCATAAACATAGTCTT
* * * * * * *
224885 CTCATAAGGATGCAAGATATTGATGCTATGGTTTGGCCACAAAGGCTTT-TTCGCACCAATTTTT
325 CTCATAAGGATACACGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCACCAATTTTT
* * *
224949 GTGAAA-TCTAAGTTCGTGCCTCAAATAAGCCAAACAT-AGATTCTAGTAATGATCTTTATTCAC
390 GT-AAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGA-ATTCTAGTAATGATCTTCATTCAC
* *
225012 TTTGAGATTAGGCACTATAAACAT
453 TTTGTGATTAGGCACTATAAACAG
* * * * *
225036 ATTCTCCTCGTTAGGATAAATGATTTTGATGATTTT-TTTT-CTTGAAAAACTTTTCTTTGCCCT
1 ATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAAACTATTCTTTGCCCT
* * * *
225099 ATTTTCCTTAAAATCAAAATTCATCGCTTAAATATGACAAGCATCGATTTTCATAACAATCTCCA
66 ATTTTCCTTAAAATCAAAATTCATCCCTTAAATAAGACAAGCATCGATTCTCATAACAGTCTCCA
* * * * ** * *
225164 TTATTTTCAAGATTGGGAACTAAGAATGCATTCTCTTCATTAGGATACAAGACATTGATGCTTTG
131 ATCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTG
* * *
225229 GTGTCACAAGAAAAGCTATTCTTTCAGCTGTTTTTGATAGAATC
196 GTGTCGCAAGAAAAGCTTTTCTTTCAACTGTTTTTGATAGAATC
225273 TGACGACAAC
Statistics
Matches: 3374, Mismatches: 603, Indels: 121
0.82 0.15 0.03
Matches are distributed among these distances:
472 127 0.04
473 427 0.13
474 501 0.15
475 1348 0.40
476 566 0.17
477 405 0.12
ACGTcount: A:0.32, C:0.18, G:0.14, T:0.36
Consensus pattern (476 bp):
ATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAAACTATTCTTTGCCCT
ATTTTCCTTAAAATCAAAATTCATCCCTTAAATAAGACAAGCATCGATTCTCATAACAGTCTCCA
ATCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTG
GTGTCGCAAGAAAAGCTTTTCTTTCAACTGTTTTTGATAGAATCAAAGTTTATCTCTTAAATAAG
ACAAACATGAATAGTCATACTAATCCCCATTCTTTTGAGGATTAGGCACCATAAACATAGTCTTC
TCATAAGGATACACGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCACCAATTTTTG
TAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGAATTCTAGTAATGATCTTCATTCACTTT
GTGATTAGGCACTATAAACAG
Found at i:231191 original size:476 final size:476
Alignment explanation
Indices: 229325--235673 Score: 6773
Period size: 476 Copynumber: 13.4 Consensus size: 476
229315 GCCTATTTTC
* * * * * *
229325 CATTCACTTTGTGATTAGGCACTATAAATACATTCTCCTCATTAGAATAAATGACAGTAATGATT
1 CATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATT
* * *
229390 TTCTTTTGCAAGGAAAA-CTTTTCTTTGCCGTATTTTCCTTAAAATCAATATTCATCCCTTAAAT
66 TTCTTTTGC-ATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAATTCATCCCTTAAAT
* ** ** * * ** *
229454 AAGATAAGTGTCTATTCTCATAACAGTCTCTATTCTTTAT-AAGATTAAGAACCATGAACACATT
130 ATGGCAAGCATCGATTCTCATAACAGTCTCCATTCTTT-TCAAGATTTGGAACCAAGAACACATT
* * * * * *
229518 CTCTACATTAGGATACAAGACATTGATGCTTTGGTGTCACAAGAAAACCTTTTTTTTCTACCGTT
194 CTCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTT
* * *
229583 TTTGATATAATCAAAGTTTGTCTCTTAAATACGACAAACATGAATACTCATACTAATCCCCATTC
259 TTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTC
* * ** *
229648 TTTTTAGGATTAGGCACCATACACTTAGTCTTCTCA-ATTG--ACAC--T-CT-A-GC-----TT
324 TTTTCAGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTT
* * *
229700 T-GCATGAAAGGCTTTCTTCCCACC----TTTGTAAAGTCTAAGTTC-TTCCTCAAATGAGACAA
389 TCGCAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGTGACAA
*
229759 ACATGGA-T-TAGTAATTATCTT
454 ACATGGATTCTAGTAATGATCTT
* * *
229780 CATTCATTTTGTGATTA-GCTACTATAAACACATTCTCCACATTAGGATAAATGATATTGATAAC
1 CATTCATTTTGTGATTAGGC-ACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGAT
* * * * *
229844 TTTCTTGTGCATGGAAAA-CTTTTCTTT-ACCT-TATTGCTTAAAATAAAAATTCATCCCTTAAA
65 TTTCTTTTGCAT-GAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAATTCATCCCTTAAA
* * * * ***
229906 TATGACAAGCATCGATTCTCATAATAATCTCCATTCTTTTGAAGATTCATAACCAAGAACACATT
129 TATGGCAAGCATCGATTCTCATAACAGTCTCCATTCTTTTCAAGATTTGGAACCAAGAACACATT
* * * * * **
229971 CTCTTCAATAGGATAAATGACATTGATGCTCTAGTGTCACAAGAAAAGGGTTTCTTTCCACCGTT
194 CTCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTT
* *
230036 TTTGATAGAATAAAAGTTTGTCTCTTAAATAAGACAAACATCAATAGTCATACTAATCCCCATTC
259 TTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTC
* * * * * * *
230101 TTTTCAGGATTAGGCACCAAAAACATAGTATTCTCATTAGGATAGACGATATTCATGCTTTAGTT
324 TTTTCAGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTT
* * * * * *
230166 TTGCAAGAAAGGCTTTC-TCACCACAAAATTTTGTAAAGTCTGAA-TTCGTGCCTCAAATGAGAT
389 TCGCAAGAAAGGCTTTCTTC-CCACCAATTTTTGTAAAGTCT-AAGTTCATGCCTCAAATGTGAC
* *
230229 AAACATGGCTTCTAGTAAAGATCTT
452 AAACATGGATTCTAGTAATGATCTT
* * * * * *
230254 CATTCATTTTGTGATTAGGTACTATAAACACATTCTCGTCATTAAGATATATGATATTGATGGTA
1 CATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATT
* * * * * *
230319 TTATTTTCCTTGGAAATCTTTTGTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATA
66 TTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAATTCATCCCTTAAATA
* * ** * * * * *
230384 AGGCAACCATTTATTCTCATAATAGTGTCCATTCTTTTCAAGA-TTGAAAACCAAAAACAAATT-
131 TGGCAAGCATCGATTCTCATAACAGTCTCCATTCTTTTCAAGATTTG-GAACCAAGAACACATTC
* * *
230447 TCCTTCATTAGGATCCTTGACATTGATGCTTTGGTGTCGC-AGGAAAGCTTTTCTTTCCACCGTT
195 T-CTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTT
* * * *
230511 TTAGATAGAGTCAAAGTTTGTCTCTTAAATAAGACAAACGTGAATACTCATACTAATCCCCATTC
259 TTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTC
* * * * * **
230576 TTTTCAAGG-TTAGGTACCATAAACATCGTCTTCTCATTAGAATACATAATATTGATGCTTTGGT
324 TTTTC-AGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGT
* * * * * * *
230640 TTTGCAAGAAAAGCATTT-TTCCCACCAATTCTTGTAAAGTCTATGTTCGTGCCTCAAATGAGTC
388 TTCGCAAGAAAGGC-TTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGTGAC
*
230704 AAACATGGATTCTAGTAATGATTTT
452 AAACATGGATTCTAGTAATGATCTT
* * *
230729 CATTCATTTTGTGATTAGGCATTATAAACACATTCTCCT-AGTTAAGGA-AAATTATATTGATGG
1 CATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCA-TT-AGGATAAATGATATTGATGA
* * *
230792 TATTCTTTTGCATGAAAATCTTTTCATTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAA
64 TTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAATTCATCCCTTAAA
* * * **
230857 TAGGGTAAGCATCGATTCTCATAACAGTGC-CTATT-TTTTCCAAGATCAGGAACCAAGAACACA
129 TATGGCAAGCATCGATTCTCATAACAGT-CTCCATTCTTTT-CAAGATTTGGAACCAAGAACACA
* * * * *
230920 TTTTATTCACTAGGATACATGACATTGATGATTCGGTGTCGCAAGAAAAGCTTTTCTTTCCACCG
192 TTCTCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCG
* * * * *
230985 TTATTAATAGAATCAAAGTTTGTCTCTTAGATAAGACAAACATAAATAGTCATACTAATCCCTAT
257 TTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCAT
* * * * *
231050 T-TTCTTCAAGATTAGGCACCACAAACTTAGTCTTCTAATAAGGATACATGATATTGATCCTTTG
322 TCTT-TTCAGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATATTGATGCTTTG
* *
231114 GTTTCGTAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGTGA
386 GTTTCGCAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGTGA
*
231179 CAAACATGGATTCTAGT-ATAGGTCTT
451 CAAACATGGATTCTAGTAAT-GATCTT
* * * *
231205 CACTT-ATTTTGTGGTTAGGCACTATAAACATATTCTCCTCATTATGATAAATGTTATTGATG-T
1 CA-TTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGAT
* * * *
231268 TTT-TTTTGCATGAAAATCTTTTATTTGCCTTATTTTCCATAAAGTCAAAATTCATCCCTTAAAT
65 TTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAATTCATCCCTTAAAT
* * * * * * *
231332 TTGACAAGCCTCAATTCTCATAACATTCTCCATTCTTTTCAAGATTAGGAACCAAGAACACAATC
130 ATGGCAAGCATCGATTCTCATAACAGTCTCCATTCTTTTCAAGATTTGGAACCAAGAACACATTC
* * * * ** * *
231397 TCTTCATTAGGATATAGGCCATTGATGCTTTGGGGTCATAAGAAAAGTTTTTCTTCCCACCGTTT
195 TCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTT
* * * * * *
231462 TTTATAAAATCAATGTTTATCTCTTAAATAAGACAAACATGACTAATCATACTAATCCCCATTCT
260 TTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCT
* * * * * * * *
231527 TTTCAGGATTAGGCTCCATAAGCATAGTCTTCTCATTAGGATAGACGATAATGAAGCTTTGGCTT
325 TTTCAGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTT
* * * * * * * ** *
231592 CGGAAGAAAGTG-TTTCTTCTCACCAATTTTTCTAAAGTGTAAGTTTATG-TTAGAAATAAGTCA
390 CGCAAGAAAG-GCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCT-CAAATGTGACA
* *
231655 AACATGGATTCCAGTAATTATCGTT
453 AACATGGATTCTAGTAATGATC-TT
* * *
231680 -ATTCATTTTGTGATTAGGCATTATAAATACATTCTCTTCATTAGGATAAATGATATTGATGATT
1 CATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATT
* * ** *
231744 TTCTTTTACATGAAAATCTTTTCATTGCTTTATTTTCCTTAAAATCAAAGTTCAT-CCTATAAAT
66 TTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAATTCATCCCT-TAAAT
* * * * * * *
231808 AAGACAAGTATCGAATCTCATAACAGTCTCCACTCTTTTCAAGATTGGGAACCAAAAACACATTC
130 ATGGCAAGCATCGATTCTCATAACAGTCTCCATTCTTTTCAAGATTTGGAACCAAGAACACATTC
* *
231873 -CATACATTAGG----AT-ACA-TG--G---T-GT-T-GCAAGAAAAGCTTTTCTTTCCACCATG
195 TC-TTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGT-
* * * *
231923 TTTT-ATAGAATCAAAGTTTGCCTCTTAAATATGACAAACATGAATAATCCA-ACTAATACCCAT
258 TTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGT-CATACTAATCCCCAT
* * * * * *
231986 TCTTTTTAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATAGAAGATATTGACGCTTTGG
322 TCTTTTCAGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATATTGATGCTTTGG
* * * * * * * * ** *
232051 CTTCGGATGAAAGGGTTTCTTCCTACC-ATATTTTGTAAATTATAAGTTCGTGCCTCAAATAAGT
387 TTTCGCAAGAAAGGCTTTCTTCCCACCAAT-TTTTGTAAAGTCTAAGTTCATGCCTCAAATGTGA
* * * *
232115 CAAATAAGGATTTTAGTAAGGATCTT
451 CAAACATGGATTCTAGTAATGATCTT
** * * * * * *
232141 CATTCATTTTGTGACCAGACACTATAAATAGATTCTCCTCTTTAGGATAAATAACATTGATGATT
1 CATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATT
* *
232206 TTCTTTTGCATGAAAAT-TTTTCTTTGCCCTCTTTTCCTTAAAATCAAAGTTCATCCCTTAAATA
66 TTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAATTCATCCCTTAAATA
* * * * * * * *
232270 TGGGAAGCATTGATTCTCGTAACAATCTCTATTATTTTCAAGATTGGGAACCAAAAACACATTTT
131 TGGCAAGCATCGATTCTCATAACAGTCTCCATTCTTTTCAAGATTTGGAACCAAGAACACA--TT
* * * * *
232335 TTGCTTTCATTAGGATACGTGACATTGACT-CTTTGGTGTCGCAAGAAAAG-TAGTTCCTTCAAC
194 CT-C-TTCATTAGGATACATGACATTGA-TGCTTTGGTGTCGCAAGAAAAGCT-TTTCTTTCCAC
* * *
232398 TGTTTTT-AGTAGAATCAAAGTTTGTCTCTTAAATTAGACAAACATGAATAGTCATACCAATCCC
255 CGTTTTTGA-TAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCC
* * * *
232462 CATTCTTTTTAGGATTAGGCACCATAAACTTAGTCTTCTAATAAAGATACATGATATTGATGCTT
319 CATTCTTTTCAGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATATTGATGCTT
* * * * * * * * **
232527 TGGTTTCGTAGGAAAAGCTTTCTTCCCACTAATTTTTGTAATGTCTACGTTCGTGTCTCAAACAT
384 TGGTTTCGCAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGT
* *
232592 GATAAACATGGATTCTAGTAATGATTTT
449 GACAAACATGGATTCTAGTAATGATCTT
* * * * * *
232620 TACTCATTTTTTGATTAGGCACTATATACACATTCTTCTCATTATGATAAATGATATTGATGATT
1 CATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATT
* * * * *
232685 TTCTTTCGCATTG-AAATCTTTTCTTTGCCTTATTTTCCGTAAAATCAAAATTTATCCCTTTAAT
66 TTCTTTTGCA-TGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAATTCATCCCTTAAAT
*
232749 ATGGCAAGCATCGATTCTCATAACAGTC-CTCATTCTTTTCAAGA-TTGAGAACTAAGAACACAT
130 ATGGCAAGCATCGATTCTCATAACAGTCTC-CATTCTTTTCAAGATTTG-GAACCAAGAACACAT
**
232812 TCTCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACTAT
193 TCTCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGT
*
232877 TTTTGATAGAATCAAAGTTTGTCTCTTGAATAAGACAAACATGAATAGTCATACTAATCCCCATT
258 TTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATT
* * * * *
232942 CTTTTCAAGATTAGGCACCATAAACATAGTCTTCCTAAT-AGGATAGACAATATTGATGCTTTGG
323 CTTTTCAGGATTAGGCACCATAAACTTAGTCTT-CTCATAAGGATACACGATATTGATGCTTTGG
* * * *
233006 CCTT-GCAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTATGTTCATGCCTCTATTGTGA
387 -TTTCGCAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGTGA
233070 CAAACATGGATTCTAGTAATGATCTT
451 CAAACATGGATTCTAGTAATGATCTT
* * *
233096 TATTCACTTTGTTATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATT
1 CATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATT
* * *
233161 TTCTTTTGCATTG-AAATCTTTCCTTTGCCCCATTTTCCTTAAAATAAAAATTCATCCCTTAAAT
66 TTCTTTTGCA-TGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAATTCATCCCTTAAAT
* * *
233225 ATGGCAAGCATCGATTCTCATAATAGTCTCCATTCTTTCCAAGATTGTGTG--CCAAAAACACAT
130 ATGGCAAGCATCGATTCTCATAACAGTCTCCATTCTTTTCAAGATT-TG-GAACCAAGAACACAT
* * * * * * *
233288 TCTCTTTATTAGGACACATGGCATTGACGCTTTGGTATTGCAAGAAAAGCTTTTCTTTCCATCGT
193 TCTCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGT
* * * * *
233353 TTTAGATAGAATCAAAGTTTGTCTCTTCAATAAGATAAACGTGAATAGTCATACTAATCCTCATT
258 TTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATT
* *
233418 CTTTTCAGGATTTGGCACCATAAACATT-GTCTTCTCATAAGGATACACGGTATTGATGCTTTGG
323 CTTTTCAGGATTAGGCACCATAAAC-TTAGTCTTCTCATAAGGATACACGATATTGATGCTTTGG
* * *
233482 TTTCGCAAGAAAGG-TTT-TTCCC-CCTTAATTTTTGTAAAGTTTAAGTTCATGCCTCAATTGTA
387 TTTCGCAAGAAAGGCTTTCTTCCCACC--AATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGTG
233544 ACAAACATGGATTCTAGTAATGATCCTT
450 ACAAACATGGATTCTAGTAATGAT-CTT
* * * *
233572 -ATTCACTTTGCGATTTGGCAC-ATAAACACATTCT-CTATATTAGGATAAATGATATTGATGAT
1 CATTCATTTTGTGATTAGGCACTATAAACACATTCTCCT-CATTAGGATAAATGATATTGATGAT
* * * *
233634 TTT-TTTTGCATGGAAATCTTTCCTTTGCCCTATTTTTCTTAAAATAAAAATTCATCCCTTAAAT
65 TTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAATTCATCCCTTAAAT
** * * *
233698 ATAACAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGTGTG--CCAAAAACACGT
130 ATGGCAAGCATCGATTCTCATAACAGTCTCCATTCTTTTCAAGATT-TG-GAACCAAGAACACAT
* * * * * *
233761 TCTTTTAATTAGGATACATGACATTGATGCTTTGGTGTTGCAAGAAAAGCTTTCCTTTCCATCAT
193 TCTCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGT
* * * * * *
233826 TTTTTATAGAATTAAAGTTTGTCTCTCTATA-AAGGCAAACATGAATAGTCACACTAATCTCCAT
258 TTTTGATAGAATCAAAGTTTGTCTCT-TAAATAAGACAAACATGAATAGTCATACTAATCCCCAT
* * * * * * *
233890 TCTTTTCAAGATTAGACACCATAAA-TATTGTCTTATCCTAACGTTACACGATATTGATGCTTTG
322 TCTTTTCAGGATTAGGCACCATAAACT-TAGTCTTCTCATAAGGATACACGATATTGATGCTTTG
* * * ** * * *
233954 GTTTCACAAGAATGGCTTTCTTCCCACCAATTTTTGTAAAGTCTATGTTCACACCTCAATTATAA
386 GTTTCGCAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGTGA
*
234019 CAAACATGGATTATAGTAATGATCTT
451 CAAACATGGATTCTAGTAATGATCTT
* * *
234045 TATTCACTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAAGATAAATGATATTGATGATT
1 CATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATT
** * * * *
234110 TTCTTTTATATGGAAATCTTTACTTTGCCCAATTTTCCTTAAAATCAAAATCCATCCCTTAAATA
66 TTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAATTCATCCCTTAAATA
* * * ** * *
234175 TGGCAAG-AACAATTTCTCATAACAATCTCCATTCTTTTCAAGATTTGGTGCCAAGACCACGTTC
131 TGGCAAGCATCGA-TTCTCATAACAGTCTCCATTCTTTTCAAGATTTGGAACCAAGAACACATTC
** * * * * * *
234239 TCTTTGTTAGGATACATGACATCGATGTTTTGGTGTCGTAATAAAAGCTTTT-TTTCCATCATTT
195 TCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTT
* * * * *
234303 TTGATGGAATCAAAGCTTATCTCTTCAATAAGACAAACATGAATAGTCATACTAATCCCTATTCT
260 TTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCT
* * *
234368 TTTCAGGATTTGGCACTATAAACATT-GTCTTCTCATAAGGATACAAGATATTGATGCTTTGGTT
325 TTTCAGGATTAGGCACCATAAAC-TTAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTT
** * * * * ** *
234432 TTACAAGAAAGGTTTTCTTCTCC-CCAAGTTTTGTAAAATGTAAGTTCATTTCTCAATTGTGACA
389 TCGCAAGAAAGGCTTTCTTC-CCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGTGACA
*
234496 AACATAGATTCTAGTAATGATCTT
453 AACATGGATTCTAGTAATGATCTT
* * * *
234520 CATTTACTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAAGAT-AATGATATTGACGATT
1 CATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATT
* * *
234584 TTCTTTTACATGAAAATCTTTACTTTGCCCAATTTTCCTTAAAATCAAAATTCATCCCTTAAATA
66 TTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAATTCATCCCTTAAATA
* * * ****
234649 TGGCAAGCATTGATTCTCATAGCAGTCTCCATTCTTTTTAAAGATTTTTTGCCAAGAACACATTC
131 TGGCAAGCATCGATTCTCATAACAGTCTCCATTC-TTTTCAAGATTTGGAACCAAGAACACATTC
* * * * * * * * *
234714 TCTTTATTAGGAGACATGGC-GTGATACTTTGGTGTTGTAAGAAAAGCTTTTCTTTCCATCATTT
195 TCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTT
* * * *
234778 TTGATAAAATAAAAGTTTGTAC-CTTCAATCAA-ACAAACATAAATAGTCATACTAATCCCCATT
260 TTGATAGAATCAAAGTTTGT-CTCTTAAAT-AAGACAAACATGAATAGTCATACTAATCCCCATT
* * *
234841 CTTTTCAGGATTAGGCACCATAAACATT-GTTTTCTCGTAAGGATACACGACATTGATGCTTTGG
323 CTTTTCAGGATTAGGCACCATAAAC-TTAGTCTTCTCATAAGGATACACGATATTGATGCTTTGG
* * * * * *
234905 TTTCACAATAAAGGCTTTCTTCCCCCCAATTTTTGTAAAG-CGTAAGTTTATGCCTCAACTGTAA
387 TTTCGCAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTC-TAAGTTCATGCCTCAAATGTGA
234969 CAAACATGGATTCTAGTAATGATCTT
451 CAAACATGGATTCTAGTAATGATCTT
* * * * * *
234995 CATTCACTTTGTTATTAGACACTCTAAACACATTTTCCTCTTTAGGATAAATGATATTGATGATT
1 CATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATT
* * * * * * *
235060 TTTTTTTGCTTGGAAATCTTTTCTTTTCCTCT-TTTCCCTTAAAATAAAAATTCATCCTTTAAAT
66 TTCTTTTGCATGAAAATCTTTTCTTTGCC-CTATTTTCCTTAAAATCAAAATTCATCCCTTAAAT
* * * * * *
235124 ATGACAAGCATTGATTCTCGTAACAGTCTACATTCATTTT-AAGGTTAGGAACCAAGAACACATT
130 ATGGCAAGCATCGATTCTCATAACAGTCTCCATTC-TTTTCAAGATTTGGAACCAAGAACACATT
* * * * * *
235188 CTTTTTATTAAGATAAATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCTATCGTT
194 CTCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTT
* * * * **
235253 TTTGATAGAATCAAAGTTTGTCTATTAAATAAAATAAACATGAATAGTCTTACTAATCTTCATTC
259 TTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTC
* * ** * ** * * *
235318 TTTTCAGGATTAGGTACCATAAGCAAAGACTTCTTGTAAGGATATACGATATTAATGCTTTAGTT
324 TTTTCAGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTT
* * * ** * * *
235383 TCGCAAGAAAGGCTTTCTTCCCACCAATTTTTGCAAAGTTTATGTTTGTACCTTAAATGAGACAA
389 TCGCAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGTGACAA
* *
235448 ACATAGATTCTAGTAATGATATT
454 ACATGGATTCTAGTAATGATCTT
* * * ** *
235471 CATTCGTTTTGTGGTTAGGCACTATAAACACATTCTCCTCATTTGGATAAATGATACGGATAATT
1 CATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATT
* *
235536 TTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCTTTAAATA
66 TTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAATTCATCCCTTAAATA
** * * * * * * *
235601 AAGCAAGCATTGATTCTCGTAACAGTCTCTATTCTTTTTAAAGATTGGGAACCAA-AAAACATTT
131 TGGCAAGCATCGATTCTCATAACAGTCTCCATTC-TTTTCAAGATTTGGAACCAAGAACACATTC
*
235665 TTTTCATTA
195 TCTTCATTA
235674 CAGCACAGGA
Statistics
Matches: 4985, Mismatches: 764, Indels: 269
0.83 0.13 0.04
Matches are distributed among these distances:
452 1 0.00
453 224 0.04
454 6 0.00
455 75 0.02
456 3 0.00
458 1 0.00
459 1 0.00
460 1 0.00
461 96 0.02
462 268 0.05
463 10 0.00
464 1 0.00
465 10 0.00
466 5 0.00
467 18 0.00
468 1 0.00
469 1 0.00
470 5 0.00
471 20 0.00
472 27 0.01
473 301 0.06
474 716 0.14
475 1109 0.22
476 1686 0.34
477 33 0.01
478 15 0.00
479 259 0.05
480 92 0.02
ACGTcount: A:0.31, C:0.18, G:0.13, T:0.37
Consensus pattern (476 bp):
CATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATT
TTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAATTCATCCCTTAAATA
TGGCAAGCATCGATTCTCATAACAGTCTCCATTCTTTTCAAGATTTGGAACCAAGAACACATTCT
CTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTT
TGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTT
TTCAGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTC
GCAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGTGACAAAC
ATGGATTCTAGTAATGATCTT
Found at i:236165 original size:13 final size:13
Alignment explanation
Indices: 236147--236173 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
236137 ACATTATGCT
236147 TTGTATCGATACA
1 TTGTATCGATACA
236160 TTGTATCGATACA
1 TTGTATCGATACA
236173 T
1 T
236174 GCTCATTGTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.30, C:0.15, G:0.15, T:0.41
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:236203 original size:20 final size:19
Alignment explanation
Indices: 236157--236213 Score: 87
Period size: 19 Copynumber: 2.9 Consensus size: 19
236147 TTGTATCGAT
236157 ACATTGTATCGATACATGC
1 ACATTGTATCGATACATGC
* *
236176 TCATTGTATCGATACATGG
1 ACATTGTATCGATACATGC
236195 ACAATTGTATCGATACATG
1 AC-ATTGTATCGATACATG
236214 AGATTGGCAG
Statistics
Matches: 34, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
19 18 0.53
20 16 0.47
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.33
Consensus pattern (19 bp):
ACATTGTATCGATACATGC
Done.