Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold1740
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 654062
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.34
File 3 of 4
Found at i:423358 original size:20 final size:20
Alignment explanation
Indices: 423333--423377 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
423323 TCAATGTATT
* *
423333 GATACTATTCATACTATATC
1 GATACTATTCACAATATATC
*
423353 GATACTATTCACAATGTATC
1 GATACTATTCACAATATATC
423373 GATAC
1 GATAC
423378 ATGAACAGTA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.36, C:0.20, G:0.09, T:0.36
Consensus pattern (20 bp):
GATACTATTCACAATATATC
Found at i:423447 original size:13 final size:13
Alignment explanation
Indices: 423429--423453 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
423419 CTGCCAGTTT
423429 ATGTATCGATACA
1 ATGTATCGATACA
423442 ATGTATCGATAC
1 ATGTATCGATAC
423454 TAAGCAAAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:427324 original size:476 final size:476
Alignment explanation
Indices: 424218--428674 Score: 4624
Period size: 475 Copynumber: 9.4 Consensus size: 476
424208 TTTCTCTAGA
* * * *
424218 CCCTAGTTTCCTGAAAATCAAAGTTCATCCCTTAAATAAGGCAAGCATTGTTTCTTGTAACAGTC
1 CCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCGTAACAGTC
* * * * * * *
424283 TCTATTCTTTTGATGGTTGGGAACCAAAAACTCATTCCTTTCATTAGGACACATGACATTGATGC
66 TCCATTCTTTTCATGATTAGGAACCAAAAACACATTCCTTTCATTAGGATACATGACATTGACGC
* * * * * **
424348 TTTA-GGCCGCAAGAAAAGCTTTTCTTTCAGCTGTTTTTGATAGAATCAAAGTTTATCTCTTGCA
131 TTTAGGGTCGCAAGAAAAGCATTTCTTTCAACTATTTTTGATAGAATCAAAGTTTGTCTCTTAAA
* * * * * * *
424412 TAAGACAAACATGAATAGTTATACTAATCCCTATCCTTTTCAAGTTTAGACAGCATAAACTTAGT
196 TAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACTTAGT
* * * *
424477 CTTCTATTAAGGATACACGATATTGATA-CTTTGGTTTTGTAAGATAGGCTTTGTTCCCACCAAT
261 CTTCTAATAAGGATACACGATATTGA-AGCTTTGGTTTCGTAAGAAAGGCTTTCTTCCCACCAAT
* * * * * * * *
424541 TTTTGTAAAATCTAAGTTCATGCCTCAGTTGGGACAAAAATGGATTCTTGGAACGATTTTCATTC
325 TTTTGTAAAGTCTAAGTTCATGCCTCAATTGTGACAAACATGGATTCTAGTAATGATCTTCATTC
* * * * * *
424606 ATTTTGTAATTAGGCACTATAAACACATTTTCCTCATTAGGATAAATAATATTG-TGATTTTTTT
390 ACTTTGTGATTAGGCACTATAAACACATTCTCCTCAATAGGATAAATGATATTGATGATTTTCTT
*
424670 TTGCGTGGAAATCTTTTCTTTG
455 TTGCATGGAAATCTTTTCTTTG
* * * * * *
424692 CCCTATTTTACTTAAAATTAATGTTCGTCCCATAAATAAGGCAAGCATTGATTCTCGTAATAGTC
1 CCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCGTAACAGTC
* * **
424757 TCCATTATTTTCTTGATT-GAGAACCAAAAATGCATT-CTGTTCATTAGGATACATGACATTGAC
66 TCCATTCTTTTCATGATTAG-GAACCAAAAACACATTCCT-TTCATTAGGATACATGACATTGAC
* * * * * ** * *
424820 GC-ATCGATGTTGCAAGAAAAGCATTTCTTTTAACCGTTTTTTATTGAATCAAAGTTTGTCTCTT
129 GCTTTAG-GGTCGCAAGAAAAGCATTTCTTTCAACTATTTTTGATAGAATCAAAGTTTGTCTCTT
* * ** *
424884 AAATAAGACAAACTTGAATAGTCATACTAATCCCTATTCTTTTC-GAGATTAAACACCTTAAACT
193 AAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAG-GATTAGGCACCATAAACT
* * * * * * *
424948 TAGTTTTCTAATAATGATACACGATAGTGATGTTTTGGTTTCATAAGAAAGGCTTTCTTCCCTCC
257 TAGTCTTCTAATAAGGATACACGATATTGAAGCTTTGGTTTCGTAAGAAAGGCTTTCTTCCCACC
* * * * ** * *
425013 AATTTTTGTAAAGTCGAAATTCATGGCTCGAA-TATGACAAGTATGAATTCTAGTATTGATCTTC
322 AATTTTTGTAAAGTCTAAGTTCATGCCTC-AATTGTGACAAACATGGATTCTAGTAATGATCTTC
** * * * * * * *
425077 ATTCGTTTTGTGATTCGACACAATAAACACATTC-CC-CATATCATGAAAAAGGTTATTGATGA-
386 ATTCACTTTGTGATTAGGCACTATAAACACATTCTCCTCA-AT-AGGATAAATGATATTGATGAT
* *
425139 TTTCTTTTGCATGGACATTTTTTCTTTG
449 TTTCTTTTGCATGGAAATCTTTTCTTTG
* * * ** ** **** * * * *
425167 CCCTTTTTTCCTTAAAATC-AAGTTTGATCCTTTAAATTTGATAAGTGCCGGTTCTTGCAATAGT
1 CCCTATTTTCCTTAAAATCAAAG-TTCATCCCTTAAATAAGGCAAGCATTGATTCTCGTAACAGT
* * * *
425231 CTCCATTCTTTTCAGGATTAGGAACTAGAAACACATTCCTTTCATTAGGATACATGACATTAACG
65 CTCCATTCTTTTCATGATTAGGAACCAAAAACACATTCCTTTCATTAGGATACATGACATTGACG
** * * * * * * *
425296 CTTTAGTATCGTAAGAAAAGCTTTTCTTTCCACAATTTTTCATAAAATAAAAGTTTGTCTCTTAA
130 CTTTAGGGTCGCAAGAAAAGCATTTCTTTCAACTATTTTTGATAGAATCAAAGTTTGTCTCTTAA
* * * * * **
425361 CTAAGATAAACGTGCATAGTCATACTAATCCCCATTCTTTTCAGGATTTGGCACTGTAAACTTAG
195 ATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACTTAG
* * * *
425426 TCTTCTAATAAGGATACATGATATTGAAGCATTGGTTTTGTAAGAAAGGTTTTCTTCCCACCAAT
260 TCTTCTAATAAGGATACACGATATTGAAGCTTTGGTTTCGTAAGAAAGGCTTTCTTCCCACCAAT
* * ***
425491 TTTTGTAAAGCCTAAATTCATGCCTCAATTGTGACAAACATGGATTCTAGTCGCGATCTTCATTC
325 TTTTGTAAAGTCTAAGTTCATGCCTCAATTGTGACAAACATGGATTCTAGTAATGATCTTCATTC
* * * * *
425556 ACTTTATGATTAGGCACTATAAATATATTCTCCTCATTAGGATAAATGATATTGATGATTTTGTT
390 ACTTTGTGATTAGGCACTATAAACACATTCTCCTCAATAGGATAAATGATATTGATGATTTTCTT
425621 TTGCATGGAAATCTTTTCTTTG
455 TTGCATGGAAATCTTTTCTTTG
* * ** *
425643 CCCTATTTTCCTTAAAATAAAAGTTCATCCCTTAAATAAGGCAAGCATTGTTTCTTTTAACAATC
1 CCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCGTAACAGTC
* * * ** * *
425708 TCCATTCTTTTCATGGTTGGGAACCCAAAACTTATTCCTTTCATTAGCACACATGACATTGACGC
66 TCCATTCTTTTCATGATTAGGAACCAAAAACACATTCCTTTCATTAGGATACATGACATTGACGC
* * * * * ** * * *
425773 TTTAGGCT-GTAAGAAAAGCTTTTCCTTCAGCCGTTTTTGATAGAATCAAAGTTTATCCCTTACA
131 TTTAGGGTCGCAAGAAAAGCATTTCTTTCAACTATTTTTGATAGAATCAAAGTTTGTCTCTTAAA
* * * * * *
425837 TAAGACAAACATAAATAGTTATACTAATCCCTATCCTTTTCAAGTTTAGGCACCATAAACTTAGT
196 TAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACTTAGT
* * * * * * *
425902 CTTCTATTAAGGATACACGATATTGATGCTTTGGTTTTGTAAGATAGCCTTTCCTCCGACCAA-T
261 CTTCTAATAAGGATACACGATATTGAAGCTTTGGTTTCGTAAGAAAGGCTTTCTTCCCACCAATT
* * * * *
425966 TTTGTAAAGTGTAAGTTCGTGCCTCAATTAG-GACAAACATGGATTCTTGTAACGATTTTCATTC
326 TTTGTAAAGTCTAAGTTCATGCCTCAATT-GTGACAAACATGGATTCTAGTAATGATCTTCATTC
* * * * *
426030 ATTTTGTGATTAGGCACTATAAACACATTTTCCTTAATAGGATAAATGATATTGGTGATTTTTTT
390 ACTTTGTGATTAGGCACTATAAACACATTCTCCTCAATAGGATAAATGATATTGATGATTTTCTT
* *
426095 TTGCGTGGAAATGTTTTCTTTG
455 TTGCATGGAAATCTTTTCTTTG
* * * * * * *
426117 CCTTATTTTACATAAAATTAATGTTCATCCCTTAAATAAGGCAGGCATTGATTCTCATAACAGTC
1 CCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCGTAACAGTC
* ** *
426182 TCCATTCTTTTCATGATTGGGAACCAAAAATGCATTCTTTTCATTAGGATACATGACATTGACGC
66 TCCATTCTTTTCATGATTAGGAACCAAAAACACATTCCTTTCATTAGGATACATGACATTGACGC
* * ** * * * *
426247 -ATCGGTGTTACAAGAAAAGCATTTCTATGAACTATTTTTGATAGAGTCAAAGTTTGTCTCGTAA
131 TTTAGG-GTCGCAAGAAAAGCATTTCTTTCAACTATTTTTGATAGAATCAAAGTTTGTCTCTTAA
* * *
426311 ATAAGACAAACACGAATAGTCATACTAATCCCCATTCTTTTCAAGATTAAGCACCATAAACTTAG
195 ATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACTTAG
* * * * *
426376 CCTTCTAATAATGATACACGATATTTGATGCTTTGGTTTCGTAAGAAAGGCTTTCTTCCCCCCTA
260 TCTTCTAATAAGGATACACGATA-TTGAAGCTTTGGTTTCGTAAGAAAGGCTTTCTTCCCACCAA
* * * * *
426441 TTTTTGTAAAGTCTAAGTTCATGCCTCGAGTGAGACAAACATGAATTCTAGTATTGATCTTCATT
324 TTTTTGTAAAGTCTAAGTTCATGCCTCAATTGTGACAAACATGGATTCTAGTAATGATCTTCATT
* * ** * * * *
426506 CATTTTGTGATTCGGCAGAATAAACACATTC-CC-CATATCATGAAAAAGGCTATTGATGA-TTT
389 CACTTTGTGATTAGGCACTATAAACACATTCTCCTCA-AT-AGGATAAATGATATTGATGATTTT
* *
426568 CTTTTGCATGGACATTTTTTCTTTG
452 CTTTTGCATGGAAATCTTTTCTTTG
* * ** * * * * * * *
426593 CCCTTTTTTCC-T----T-AAA-TTCATCCTTTAAATTTGACAAGCGTCGGTTCTCATAATAGTT
1 CCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCGTAACAGTC
* * * * * * *
426651 TCTATTCTTTTCAGGATTAGGAACTAGAAACACATTCTTTTCATTAGGATACACGACATTAACGC
66 TCCATTCTTTTCATGATTAGGAACCAAAAACACATTCCTTTCATTAGGATACATGACATTGACGC
* * * * *
426716 TTTAGTGTCACAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAA
131 TTTAGGGTCGCAAGAAAAGCATTTCTTTCAACTATTTTTGATAGAATCAAAGTTTGTCTCTTAAA
* * * *
426781 TAAGATAAACAAGAATAATCATACTAATCCCCATTCTTTTCAGGATTTGGCACCATAAACTTAGT
196 TAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACTTAGT
* *
426846 CTTTTAATAAGGATACACGATATTGAAGCATTGGTTTCGTAAGAAAGGCTTTCTTCCCACCAATT
261 CTTCTAATAAGGATACACGATATTGAAGCTTTGGTTTCGTAAGAAAGGCTTTCTTCCCACCAATT
* * * * **
426911 TTTGTAAAGCCTAAATTCATGCCTCAATTGTGAGAAATATGGATTCTAGTCGTGATCTTCATTCA
326 TTTGTAAAGTCTAAGTTCATGCCTCAATTGTGACAAACATGGATTCTAGTAATGATCTTCATTCA
* * **
426976 CTTTGTGATTAGGCACTATAAACATATTCTCCTCAGTAGGACGAATGATATTGATGATTTTCTTT
391 CTTTGTGATTAGGCACTATAAACACATTCTCCTCAATAGGATAAATGATATTGATGATTTTCTTT
*
427041 TGCAAT-GAAATATTTTCTTTG
456 TGC-ATGGAAATCTTTTCTTTG
* * * *
427062 CCCCATTTTCCTTAAAATTCAAAGTTCAACACTTAAATAAGGCAAGCATTGATTCCCGTAACAGT
1 CCCTATTTTCCTTAAAA-TCAAAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCGTAACAGT
* * * * *
427127 CTCCATTCTTTTCATGATTAGGAACTAGAAACACATTCCTTTCACTAGGATGCATGA-ATTAACG
65 CTCCATTCTTTTCATGATTAGGAACCAAAAACACATTCCTTTCATTAGGATACATGACATTGACG
* ** * *
427191 CTTTAGGGTCACAAGAAAAGCATTTCTTTCGGCTATTTTTTATAGAATCAAAGTTTATCTCTTAA
130 CTTTAGGGTCGCAAGAAAAGCATTTCTTTCAACTATTTTTGATAGAATCAAAGTTTGTCTCTTAA
* * * * *
427256 ATAAGACAAATATGAATAGTCATACTAATCCCCATTCATTTCAGGATTAGGCATCGTAAACATAG
195 ATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACTTAG
* ** *
427321 TCTTCTATTAAGGATACACGATATTGAAGCAATGGTTTCGTAAGAAAGGCTTTCTTTCCACCAAT
260 TCTTCTAATAAGGATACACGATATTGAAGCTTTGGTTTCGTAAGAAAGGCTTTCTTCCCACCAAT
** * * * *
427386 TTTTGTAAAGTCTAAGTTTGTCCCTCATTTGTGACAAACATTGATTCTAGTAACGATCTTCATTC
325 TTTTGTAAAGTCTAAGTTCATGCCTCAATTGTGACAAACATGGATTCTAGTAATGATCTTCATTC
* * **
427451 ACTTTGTGATTAGGCACTATAAACATATTTTCCTCGTTAGGATAAATGATATTGATGATTTTCTT
390 ACTTTGTGATTAGGCACTATAAACACATTCTCCTCAATAGGATAAATGATATTGATGATTTTCTT
427516 TTGCATGGAAATCTTTTCTTTG
455 TTGCATGGAAATCTTTTCTTTG
* * * * *
427538 CCCTATTTTTCATAAAATCAAAGTTCATCCCTTCAATAAGGCAAGCAATGATTCTCGTAACAGCC
1 CCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCGTAACAGTC
* * * * * * * * *
427603 TCTATCCATTTCATGGTTGGGAACCAAAAACTCATT-TTTCTCGTTAGGATACATGACATTGACA
66 TCCATTCTTTTCATGATTAGGAACCAAAAACACATTCCTT-TCATTAGGATACATGACATTGACG
** * * * * *
427667 CAAT-GATGTCGTAAGAAAAGCATTTCTTTCAA-TAGTTTTTCATAGAATCAAAATTTGTCCCTT
130 CTTTAG-GGTCGCAAGAAAAGCATTTCTTTCAACTA-TTTTTGATAGAATCAAAGTTTGTCTCTT
* * * * * *
427730 AAATAAGACAAACATGAATAGTCATACTAATCTCCTTTTTTTTCAAGG-TTACGCGCCATAAACC
193 AAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTC-AGGATTAGGCACCATAAACT
* * * * * * *
427794 TAGTCTTCTCATAAGCATACACGATACTGATGTTTTGGTTTCATAATAAAGGCTTTCTTCCCACC
257 TAGTCTTCTAATAAGGATACACGATATTGAAGCTTTGGTTTCGTAAGAAAGGCTTTCTTCCCACC
* * * * * ** * * *
427859 AATTTTTATAAAGTTTAAGTTCGTGCCTTAATTGTAACAAATGTCGATTCTAGTAATAAACTTCA
322 AATTTTTGTAAAGTCTAAGTTCATGCCTCAATTGTGACAAACATGGATTCTAGTAATGATCTTCA
* ** * * * *
427924 TTCACTTTGTGGTTTTGCACTATAAACACATTCTCCACATTAGGATAAATGATATCGATTATTTT
387 TTCACTTTGTGATTAGGCACTATAAACACATTCTCCTCAATAGGATAAATGATATTGATGATTTT
** * *
427989 CTACTGCATGAAAATCATTTT-TAT-
452 CTTTTGCATGGAAATC-TTTTCTTTG
* * * *
428013 CCCTATTTTCCTTAAAATCAAAATTCATCCCTTAAATAAGGCAAGCATT-ATTCCCATAACAATC
1 CCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCGTAACAGTC
* * * *
428077 TCCATTGC-TTTAAAGATTAGGAACCAGAAACACATTCCTTTCATTAGGATACTTGACATTGACG
66 TCCATT-CTTTTCATGATTAGGAACCAAAAACACATTCCTTTCATTAGGATACATGACATTGACG
** * * *
428141 CTTTAATGT-GTAAGAAAAGCATTTCTTTCAACCATTTTTGGTAGAATCAAAGTTTGTCTCTTAA
130 CTTTAGGGTCGCAAGAAAAGCATTTCTTTCAACTATTTTTGATAGAATCAAAGTTTGTCTCTTAA
* * ** * *
428205 ATAAGACAAACATAAATAGTCATATTAATCCCCATTCTTTTCAATATTAGGCATCATAAACATAG
195 ATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACTTAG
* * * * *
428270 TCTTCTAATAAGGACACACGATATTGAAGCTTTGGTTTCGTAAGAAAGGCTCTCTTCCTACAAAA
260 TCTTCTAATAAGGATACACGATATTGAAGCTTTGGTTTCGTAAGAAAGGCTTTCTTCCCACCAAT
* * * ** * *
428335 TTCTG-ACAGTCTATGTTCGCGCCTCATTTGTGACAAACATGGTTTCT-G----G----T-ATTC
325 TTTTGTAAAGTCTAAGTTCATGCCTCAATTGTGACAAACATGGATTCTAGTAATGATCTTCATTC
* * * * *
428389 ATTTTGTGATTAGGCACTGTAAACATATTCTTCTCAGTAGGATAAATGATATTGATGATTTTCTT
390 ACTTTGTGATTAGGCACTATAAACACATTCTCCTCAATAGGATAAATGATATTGATGATTTTCTT
428454 TTGCATGGAAATCTTTTTCTTTG
455 TTGCATGGAAATC-TTTTCTTTG
* * * * * * *
428477 CCCTATTTTCCTTAAAATCAAAGTTTA-CCCTTTAAATAAGGCAAGTAGTAATTCTCATAATAAT
1 CCCTATTTTCCTTAAAATCAAAGTTCATCCC-TTAAATAAGGCAAGCATTGATTCTCGTAACAGT
* * *
428541 CTCCATTCTTTTCATGATCT-CGAACCAAAAACACATTCCTTTCAATAGGATACATGACATTGAT
65 CTCCATTCTTTTCATGAT-TAGGAACCAAAAACACATTCCTTTCATTAGGATACATGACATTGAC
* * * * *
428605 GCTTT-GGTTTTGCAAGAAAAGCATTTCTTTGAACTGTTATTGATAGAATCAAAGTTTGTCTCTT
129 GCTTTAGG-GTCGCAAGAAAAGCATTTCTTTCAACTATTTTTGATAGAATCAAAGTTTGTCTCTT
428669 AAATAA
193 AAATAA
428675 TACTGTCGCA
Statistics
Matches: 3280, Mismatches: 642, Indels: 130
0.81 0.16 0.03
Matches are distributed among these distances:
462 72 0.02
463 6 0.00
464 42 0.01
465 71 0.02
466 54 0.02
468 133 0.04
469 252 0.08
470 9 0.00
471 2 0.00
472 32 0.01
473 165 0.05
474 423 0.13
475 1011 0.31
476 822 0.25
477 186 0.06
ACGTcount: A:0.31, C:0.18, G:0.14, T:0.37
Consensus pattern (476 bp):
CCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCGTAACAGTC
TCCATTCTTTTCATGATTAGGAACCAAAAACACATTCCTTTCATTAGGATACATGACATTGACGC
TTTAGGGTCGCAAGAAAAGCATTTCTTTCAACTATTTTTGATAGAATCAAAGTTTGTCTCTTAAA
TAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACTTAGT
CTTCTAATAAGGATACACGATATTGAAGCTTTGGTTTCGTAAGAAAGGCTTTCTTCCCACCAATT
TTTGTAAAGTCTAAGTTCATGCCTCAATTGTGACAAACATGGATTCTAGTAATGATCTTCATTCA
CTTTGTGATTAGGCACTATAAACACATTCTCCTCAATAGGATAAATGATATTGATGATTTTCTTT
TGCATGGAAATCTTTTCTTTG
Found at i:431930 original size:21 final size:21
Alignment explanation
Indices: 431890--431930 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
431880 GTCAACCTTG
*
431890 TGTATTGATACCAATAGTATA
1 TGTATTGATACCAACAGTATA
431911 TGTATTGATA-CAACACGTAT
1 TGTATTGATACCAACA-GTAT
431931 TTTTACTTAG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 4 0.22
21 14 0.78
ACGTcount: A:0.37, C:0.12, G:0.15, T:0.37
Consensus pattern (21 bp):
TGTATTGATACCAACAGTATA
Found at i:435555 original size:476 final size:473
Alignment explanation
Indices: 433549--436730 Score: 3381
Period size: 476 Copynumber: 6.7 Consensus size: 473
433539 GTCTGTAAAT
* * * * *
433549 ACAAATATGAATAGTCATACTAATCCCCATTATTTTCAAGATTAGGCACCATAAACTTAGTTTTT
1 ACAAACATGAATAGTCATACTAATCTCCATTATTTTCAGGATTA-GCACCATAAACTTAGTCTTC
* * * * *
433614 TAATAAGGATACATGATATTGAGGCAATGGTTTCCTAAGAAAGGCTTTCTTCCCATCAATTTTTG
65 TAATAAGGATACACGATATTGATGCATTGGTTTCATAAGAAAGGCTTTCTTCCCACCAATTTTTG
* * * * * *
433679 TGAAGTCTAAGTTCATGCCTCATTTATGACAAACATGGATTTTAGTAATGATCTTTATTCACTTT
130 TAAAGTCTAAGTTCGTGCCTCAATTGTGACAAACATGGATTCTAGTAATGATCTTCATTCACTTT
* * * * *
433744 GTGATTAGGCACTATAAGCATATGCTCGTCTTTAGGATAAACGATATTGATGATTTTCTTTTGCA
195 GTGATTAGGCACTATAAACATATTCTCCTCATTAGGATAAATGATATTGATGATTTT-TTTTGCA
* *
433809 TGAAAATCTTTTCTTTGCCCTATTTTTCTTTAAATCAAAGTTCATCCCTTAAATAAGGCAAGCAT
259 TGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGGCAAGCAT
*** * *
433874 TGATTCTTGTAACAGCCTCTATTCATTTCATGATTAGGAACCAAAAATACATTCCTTTCGTTAGG
324 TGATTCCCATAACAGCCTCTATTCATTTCATGATT-GGAACCAAAAACACATTCCTTTCATTAGG
* * * * *
433939 ATACATGACATTAACGTAATAGTGTTGCAAGAAAAGCATTTCTTTCAATCGTTTTTGATAAAATC
388 ATACATGACATTGACGCAATGGTGTCGCAAGAAAAGCATTTCTTTCAATCGTTTTTGATAGAATC
*
434004 AAAGTTTATCTCTTAAATAAG
453 AAAGTTTGTCTCTTAAATAAG
* * * **
434025 ACAAACATGAATAGTCATACTAATCACCATTCTTTTTAACATTAAGCACCATAAACTTAGTCTTC
1 ACAAACATGAATAGTCATACTAATCTCCATTATTTTCAGGATT-AGCACCATAAACTTAGTCTTC
* * *
434090 TAA-AATGG-TACACGATATTGATGCTTTGGTTTCATAAGAAAGGCTTTTTTCCCTCCAATTTTT
65 TAATAA-GGATACACGATATTGATGCATTGGTTTCATAAGAAAGGCTTTCTTCCCACCAATTTTT
* * * * * * *
434153 GTAAAGTCTAAGTTCATACCTCGAA-TGAGACAAAAATGAATTCTAGTATTGATCTTCATTCATT
129 GTAAAGTCTAAGTTCGTGCCTC-AATTGTGACAAACATGGATTCTAGTAATGATCTTCATTCACT
* * * * * * ** *
434217 TTGTGATTAGGCACAATAAAGACATTC-CC-CATATCATGATAAAGGTTATTGACAATTTCTTTT
193 TTGTGATTAGGCACTATAAACATATTCTCCTCAT-T-AGGATAAATGATATTGATGATTTTTTTT
* * * * * * **
434280 GCATGGACATTTTTTCTTTGCCCTTTTTTCCTTAAAATCAAATTTCATCCTTTAAATTTGGCAAG
256 GCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGGCAAG
* * * * * * * * *
434345 CATCGATTCTCGTAATAGTCTCTATTCTTTTCAGGATTAGGAACCAAAAATACATTCCTTTTATT
321 CATTGATTCCCATAACAGCCTCTATTCATTTCATGATT-GGAACCAAAAACACATTCCTTTCATT
* * ** * * * * * *
434410 AGGATACTTGACATTGAGGCTTTAGTGTCACAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGA
385 AGGATACATGACATTGACGCAATGGTGTCGCAAGAAAAGCATTTCTTTCAATCGTTTTTGATAGA
434475 ATCAAAGTTTGTCTCTTAAATAAG
450 ATCAAAGTTTGTCTCTTAAATAAG
* * * * * * * *
434499 ATAAACATGAATAGTTATTCCAATCCCCATTCTTTTCAAGATTAGAAACCATAAACTTAGTCTTC
1 ACAAACATGAATAGTCATACTAATCTCCATTATTTTCAGGATTAG-CACCATAAACTTAGTCTTC
* * * **
434564 TAATAAGGATGCACGATATTGAAGCATTGGTTTCATAAGATAGGCTTTCTTCCCACCCTTTTTTG
65 TAATAAGGATACACGATATTGATGCATTGGTTTCATAAGAAAGGCTTTCTTCCCACCAATTTTTG
* * * * *
434629 TAAAGCCTAAATTCATTCCTCAATTGTGACAAACATGGATTCTAGTCATGATCTTCATTCACTTT
130 TAAAGTCTAAGTTCGTGCCTCAATTGTGACAAACATGGATTCTAGTAATGATCTTCATTCACTTT
* *
434694 GTGATTAGGCACTATAAACATATTCTCCTTAGTAGGATAAATGATATTGATGATTTTCTTTTGCA
195 GTGATTAGGCACTATAAACATATTCTCCTCATTAGGATAAATGATATTGATGATTTT-TTTTGC-
* * *
434759 ATG-AAATCTTTTCTTTGCCCTATTTTACTTAAAATTTAAAGTTCAACCCTTAAATAAGGCAAGC
258 ATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAA-TCAAAGTTCATCCCTTAAATAAGGCAAGC
* * * * *
434823 ATTGATTCCCATAACAGTCTCCATT-TTTATCATGATTGGGAACCAGAAACACATTTCTTTCATT
322 ATTGATTCCCATAACAGCCTCTATTCATT-TCATGATT-GGAACCAAAAACACATTCCTTTCATT
* ** * * * *** * *
434887 AGGATACATGAAATTGACGCTTTGGGGTCACAA-AATAAGCATCTCTTTTGGTTGTTTTTTATAG
385 AGGATACATGACATTGACGCAATGGTGTCGCAAGAA-AAGCATTTCTTTCAATCGTTTTTGATAG
*
434951 AATTAACA-TTTGTCTCTTAAATAAG
449 AATCAA-AGTTTGTCTCTTAAATAAG
* * * *
434976 ATAAACATTAGTAGTCATACTAATC-CCTATTCATTTT-AGGATTAGGCACCATAAA-TATAGTT
1 ACAAACATGAATAGTCATACTAATCTCC-ATT-ATTTTCAGGATTA-GCACCATAAACT-TAGTC
* * * * * *
435038 TTCAAATAAGGATACACGATATTGAAGCAATGGTTTCATAAGAAAAGTTTTTTTCCCACCAATTT
62 TTCTAATAAGGATACACGATATTGATGCATTGGTTTCATAAGAAAGGCTTTCTTCCCACCAATTT
* * * * * * *
435103 TTATTAAGTCTAAGTTTGTGCCTCATTTGTGACAAACATGGATTCTAATAATCACCTTCATTCAC
127 TTGTAAAGTCTAAGTTCGTGCCTCAATTGTGACAAACATGGATTCTAGTAATGATCTTCATTCAC
* *
435168 TTTGTGATTAGGCACTATAAATATATTCTCCTCATTAAGATAAATGATATTGATGATTTTTTTCT
192 TTTGTGATTAGGCACTATAAACATATTCTCCTCATTAGGATAAATGATATTGATGATTTTTTT-T
* * *
435233 GCATGAAAATATTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCAACCCTGAAATAAGGCAAG
256 GCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGGCAAG
* *
435298 CATTGATTCCCATAACAGCCTCTATTCATTTCATGATTGGAAACCAAAAACACATTTCTTTCGTT
321 CATTGATTCCCATAACAGCCTCTATTCATTTCATGATTGG-AACCAAAAACACATTCCTTTCATT
* * * *
435363 AGGATACATGACATTGACAG-AATGGTGGCGCCAGAAAAGCATTTCTTTCAATTGTTTTTCATAG
385 AGGATACATGACATTGAC-GCAATGGTGTCGCAAGAAAAGCATTTCTTTCAATCGTTTTTGATAG
435427 AATCAAAGTTTGTCTCTTAAATAAG
449 AATCAAAGTTTGTCTCTTAAATAAG
* * * * *
435452 ACAAACATGAATAATCATTCTAATGTCCATTATCTTT-AGGATTATGCACTATAAACCTAGTCTT
1 ACAAACATGAATAGTCATACTAATCTCCATTAT-TTTCAGGATTA-GCACCATAAACTTAGTCTT
* * * ** * * *
435516 CTCATAAGCATGCACGATATTGATGTTTTGATCTCATAAGAGAA-GCTTTCTTTCCACCAATTTT
64 CTAATAAGGATACACGATATTGATGCATTGGTTTCATAAGA-AAGGCTTTCTTCCCACCAATTTT
* * * * * *
435580 TATAAAGTCTAGGTTTGTGCCTTAATTGTGAC-AACTATGGATTCTAGAAATGAACTTCATTCAC
128 TGTAAAGTCTAAGTTCGTGCCTCAATTGTGACAAAC-ATGGATTCTAGTAATGATCTTCATTCAC
** * * * * * **
435644 TTTGCAATTTA-GCACTCTAAACACATTTTCCTCATTAGGATAGATGATATCGATGATTTTCTAC
192 TTTGTGA-TTAGGCACTATAAACATATTCTCCTCATTAGGATAAATGATATTGATGATTTT-TTT
* * * * * * *
435708 TGCATGAAAATCGTTTCTATGCGCTATTTTCCTTAAAATCAAAGTTTATTCTTTAAATAAGGTAA
255 TGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGGCAA
* * * * * * * *
435773 GCATTAATTTTCGA-AACAGTCTCTATTCTTTTCATGATCCGGAACTC-AAAACACATCCCTTCC
320 GCATTGA-TTCCCATAACAGCCTCTATTCATTTCATGAT-TGGAAC-CAAAAACACATTCCTTTC
* * * * ** *
435836 AATAGGATACTTGACATTTATGCTTTGGTGTCGCAAGAAAAGCATTTCTTTCAGTCGTTTTTGAT
382 ATTAGGATACATGACATTGACGCAATGGTGTCGCAAGAAAAGCATTTCTTTCAATCGTTTTTGAT
* * *
435901 AGAATCAGAGTTTGTTTCTCAAATAAG
447 AGAATCAAAGTTTGTCTCTTAAATAAG
* * * * *
435928 ACAAACATAAATAGTCATACTAATC-CCTATTCTTTACAGGATTAG--GCATAAACTTAGTCTTT
1 ACAAACATGAATAGTCATACTAATCTCC-ATTATTTTCAGGATTAGCACCATAAACTTAGTCTTC
* * * *
435990 TAATAAGGATACACGATATTGAGGCAATGCTTTCCTAAGAAAGGCTTTCTTCCCACCAATTTTTG
65 TAATAAGGATACACGATATTGATGCATTGGTTTCATAAGAAAGGCTTTCTTCCCACCAATTTTTG
* * * *
436055 TAAAGTCTAAGTTTGTGCCTCATTTGTGACAAACATAGATTCTAGTAATGATCTTCATTTACTTT
130 TAAAGTCTAAGTTCGTGCCTCAATTGTGACAAACATGGATTCTAGTAATGATCTTCATTCACTTT
* * * * ** *
436120 GTGATTAGGTATTATAAACATATTCTCGTCTTTAGGATAAACAATATTGATGATTTTCTTTTACA
195 GTGATTAGGCACTATAAACATATTCTCCTCATTAGGATAAATGATATTGATGATTTT-TTTTGCA
* * * * * * *
436185 TTAAAATCTTTTCTTTACCCTACTATCCTTTAAATCAAAGTTCATCCCCTAAATAAGGTAAGCAT
259 TGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGGCAAGCAT
* * * * * * *
436250 TGATTCTCATAAAAGCCTTTATTCATTTCTTGATTGGGAACTAAAAACACATTCATTTCGTTAGG
324 TGATTCCCATAACAGCCTCTATTCATTTCATGATT-GGAACCAAAAACACATTCCTTTCATTAGG
* ** *
436315 ATACATGGCATTGACATAATGGTGTCGCAAGAAAAGCATTTCTTTCAA-CGTTTTTCATAGAATC
388 ATACATGACATTGACGCAATGGTGTCGCAAGAAAAGCATTTCTTTCAATCGTTTTTGATAGAATC
* *
436379 AAAGTTTGTCTCTTTAATGAG
453 AAAGTTTGTCTCTTAAATAAG
* * * *
436400 ATAAACATGAATAGTCATACTAATCTCCATTCTTTTCAGGATTACGAACCATAAACTGAGTCTTC
1 ACAAACATGAATAGTCATACTAATCTCCATTATTTTCAGGATTA-GCACCATAAACTTAGTCTTC
* * ** * * * *
436465 TCATAAGGATACATGATATTGATGTTTTGGCTTCGTAAGAAAGGCTTTCTTCCTAACAATTTTTG
65 TAATAAGGATACACGATATTGATGCATTGGTTTCATAAGAAAGGCTTTCTTCCCACCAATTTTTG
* * * * * * *
436530 CAAAGTCTAAGTTCGTACCTCAATTGCGATAAACATGGATTCTAGTAATGAACTTTATTCATTTT
130 TAAAGTCTAAGTTCGTGCCTCAATTGTGACAAACATGGATTCTAGTAATGATCTTCATTCACTTT
* * * *
436595 GTGATTTGGCACTATAAACATATTCTTCTCATTAGGATAAATGATATTGTTGATTTTTTACTT-A
195 GTGATTAGGCACTATAAACATATTCTCCTCATTAGGATAAATGATATTGATGATTTTTT--TTGC
* * *
436659 ATGAAAATCGTTTCTATGCCCTATTTTCCTGAAAATCGAAA-TTCATCCCTTAAATAAGGCAAGC
258 ATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATC-AAAGTTCATCCCTTAAATAAGGCAAGC
436723 ATTGATTC
322 ATTGATTC
436731 TTATAACCGT
Statistics
Matches: 2241, Mismatches: 411, Indels: 109
0.81 0.15 0.04
Matches are distributed among these distances:
472 77 0.03
473 304 0.14
474 259 0.12
475 525 0.23
476 666 0.30
477 404 0.18
478 6 0.00
ACGTcount: A:0.32, C:0.17, G:0.13, T:0.37
Consensus pattern (473 bp):
ACAAACATGAATAGTCATACTAATCTCCATTATTTTCAGGATTAGCACCATAAACTTAGTCTTCT
AATAAGGATACACGATATTGATGCATTGGTTTCATAAGAAAGGCTTTCTTCCCACCAATTTTTGT
AAAGTCTAAGTTCGTGCCTCAATTGTGACAAACATGGATTCTAGTAATGATCTTCATTCACTTTG
TGATTAGGCACTATAAACATATTCTCCTCATTAGGATAAATGATATTGATGATTTTTTTTGCATG
AAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGGCAAGCATTG
ATTCCCATAACAGCCTCTATTCATTTCATGATTGGAACCAAAAACACATTCCTTTCATTAGGATA
CATGACATTGACGCAATGGTGTCGCAAGAAAAGCATTTCTTTCAATCGTTTTTGATAGAATCAAA
GTTTGTCTCTTAAATAAG
Found at i:437230 original size:34 final size:34
Alignment explanation
Indices: 437192--437262 Score: 97
Period size: 34 Copynumber: 2.1 Consensus size: 34
437182 AAACAAGTAT
** *
437192 AAAAGAGCTTTCAAAAAATAACAACAATGAAAGC
1 AAAAGAGCTTGAAAAAAATAACAACAATGAAAAC
**
437226 AAAAGCTCTTGAAAAAAATAACAACAATGAAAAC
1 AAAAGAGCTTGAAAAAAATAACAACAATGAAAAC
437260 AAA
1 AAA
437263 TTAAACTTTG
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
34 32 1.00
ACGTcount: A:0.62, C:0.14, G:0.10, T:0.14
Consensus pattern (34 bp):
AAAAGAGCTTGAAAAAAATAACAACAATGAAAAC
Found at i:444851 original size:13 final size:13
Alignment explanation
Indices: 444833--444857 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
444823 CATAAAATGT
444833 TGTATCGATACAA
1 TGTATCGATACAA
444846 TGTATCGATACA
1 TGTATCGATACA
444858 TATTTTTTTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:444942 original size:13 final size:13
Alignment explanation
Indices: 444924--444948 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
444914 ATTACTCACA
444924 TGTATCGATACAT
1 TGTATCGATACAT
444937 TGTATCGATACA
1 TGTATCGATACA
444949 CTGATCTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:445085 original size:52 final size:52
Alignment explanation
Indices: 444957--445077 Score: 217
Period size: 52 Copynumber: 2.3 Consensus size: 52
444947 CACTGATCTT
444957 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACATGATAAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACATGATAAAA
*
445009 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACT-ATTAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACA-TGATAAAA
445061 TGTATCGATACATGCAG
1 TGTATCGATACATGCAG
445078 ATAAATTTTC
Statistics
Matches: 67, Mismatches: 1, Indels: 2
0.96 0.01 0.03
Matches are distributed among these distances:
52 66 0.99
53 1 0.01
ACGTcount: A:0.35, C:0.18, G:0.19, T:0.28
Consensus pattern (52 bp):
TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACATGATAAAA
Found at i:445977 original size:20 final size:21
Alignment explanation
Indices: 445936--445977 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
445926 TAAACCATGA
**
445936 TTCATGCATTTTGAGCTATGT
1 TTCATGCATTTACAGCTATGT
445957 TTCATGCATTTACAG-TATGT
1 TTCATGCATTTACAGCTATGT
445977 T
1 T
445978 CAGCACCTCC
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
20 6 0.32
21 13 0.68
ACGTcount: A:0.21, C:0.14, G:0.17, T:0.48
Consensus pattern (21 bp):
TTCATGCATTTACAGCTATGT
Found at i:449963 original size:13 final size:13
Alignment explanation
Indices: 449947--449989 Score: 59
Period size: 13 Copynumber: 3.3 Consensus size: 13
449937 ACAATTCATC
*
449947 ATGTATCGATATA
1 ATGTATCGATACA
449960 ATGTATCGATACA
1 ATGTATCGATACA
* *
449973 TTGTATCAATACA
1 ATGTATCGATACA
449986 ATGT
1 ATGT
449990 CTTACGTATC
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
13 26 1.00
ACGTcount: A:0.37, C:0.12, G:0.14, T:0.37
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:451555 original size:19 final size:20
Alignment explanation
Indices: 451512--451561 Score: 68
Period size: 20 Copynumber: 2.5 Consensus size: 20
451502 CATATCCAGA
*
451512 TGTATCGATACATTATGATT
1 TGTATCGATACATTATCATT
451532 TGTATCGATACATGT-TCA-T
1 TGTATCGATACAT-TATCATT
451551 TGTATCGATAC
1 TGTATCGATAC
451562 GTACTTAATT
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
19 12 0.43
20 15 0.54
21 1 0.04
ACGTcount: A:0.28, C:0.14, G:0.16, T:0.42
Consensus pattern (20 bp):
TGTATCGATACATTATCATT
Found at i:451574 original size:20 final size:19
Alignment explanation
Indices: 451512--451580 Score: 59
Period size: 20 Copynumber: 3.5 Consensus size: 19
451502 CATATCCAGA
*
451512 TGTATCGATACAT-TATGATT
1 TGTATCGATACATCT-T-AAT
* *
451532 TGTATCGATACATGTTCAT
1 TGTATCGATACATCTTAAT
*
451551 TGTATCGATACGTACTTAAT
1 TGTATCGATACAT-CTTAAT
*
451571 TGTATTGATA
1 TGTATCGATA
451581 TATGAAACTG
Statistics
Matches: 41, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
19 13 0.32
20 27 0.66
21 1 0.02
ACGTcount: A:0.29, C:0.12, G:0.16, T:0.43
Consensus pattern (19 bp):
TGTATCGATACATCTTAAT
Found at i:451651 original size:13 final size:13
Alignment explanation
Indices: 451633--451658 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
451623 CATGGGACAA
451633 TGTATCAATACAT
1 TGTATCAATACAT
451646 TGTATCAATACAT
1 TGTATCAATACAT
451659 GAAGAATTGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.08, T:0.38
Consensus pattern (13 bp):
TGTATCAATACAT
Found at i:461784 original size:12 final size:12
Alignment explanation
Indices: 461767--461793 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
461757 GAAAAGCTTC
461767 TTTATCCACCAT
1 TTTATCCACCAT
461779 TTTATCCACCAT
1 TTTATCCACCAT
461791 TTT
1 TTT
461794 TGATAGAATC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.22, C:0.30, G:0.00, T:0.48
Consensus pattern (12 bp):
TTTATCCACCAT
Found at i:462400 original size:476 final size:475
Alignment explanation
Indices: 461100--463734 Score: 2727
Period size: 476 Copynumber: 5.6 Consensus size: 475
461090 TGAGCTCACG
* * * *
461100 TAAATGATATTCATGATTTTCTTTTGAATGGAAATCTTTTCTTTGCCCTATTTTTCTTAAAATCA
1 TAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATTA
* * * * *
461165 AAGTTTATCCCTTAAATAAGGCAAGCATTAATACTCGTAACAGTCTCCATTCTTTTCATGATTAG
66 AAGTTCATCCCTTAAATAAAGCAAGCATTGATTCTCATAACAGTCTCCATTCTTTTCATGATTAG
* * * *
461230 GAACCAAAAACACATTCCTTTTAATAGGATACATGACATTGATGCTTTGGAGTCACAAGAAAAGC
131 GAACCAAAAACACATTCCTTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGC
* * *
461295 ATTTCTTTCAACCCTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAAAAACATGAACAGTC
196 ATTTCTTTCAACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTC
*
461360 ATACTAAT-CCCATTCTTTTT--AGAATTAGGCACCATAAACTATTTCTTCTAATAAGGATACAC
261 ATACTAATCCCCATT-TTTTTCAAG-ATTAGGCACCATAAACTA-GTCTTCTAATAAGGATACAC
* * *
461422 GATATTGATGCTTTGGTTTCATAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTC
323 GATATTGAAGCATTGGTTTCGTAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTC
* * * **
461487 ATGTCTCAA--ATGAGGCAAACATGAATTCTAGTAATGACCTTCATTCATTTTGTGATTAGATAC
388 ATGCCTCAATTATGA--CAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCAC
* * *
461550 TATAAACACATGCTCCTTATTACGA
451 TATAAACACATTCTCCTCATTAGGA
* * * * * *
461575 TAAATGTTATTAATGATTTTGTTTTGCTTGG-AAT-TTTT-TTTACCATATTTTCCTTAAAA-T-
1 TAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATTA
* * * * * * *
461635 CA-TTCATCCCATAAATTTGAA--AAGCATCGATTCTCGTAATAGTCTCCATTCTTTTCAGGATT
66 AAGTTCATCCCTTAAA--TAAAGCAAGCATTGATTCTCATAACAGTCTCCATTCTTTTCATGATT
* * * * **
461697 AGGAACCAAGAACACATTCTCTTT-AGTAGGACACATGACAATGATGCTTCAGTGTCGCAAGAAA
129 AGGAACCAAAAACACATTC-CTTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAA
* * *
461761 AGCTTCTTTATCCACCATTTTATCCACCATTTTTGATAGAATC-AAGTTTGTCTCTTAAATCAGA
193 AG---CATT-T----C---TT-TCAACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGA
* * * * *
461825 CAAACCTGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGACACCATAAACTTAGCCTTCT
246 CAAACATGAATAGTCATACTAATCCCCATTTTTTTCAAGATTAGGCACCATAAAC-TAGTCTTCT
* * *
461890 AATAAGGATACACGTTATTGAAGCATTGGTTTCGTAACAAAGGCGTTT-TTCCTACCAATTTTTG
310 AATAAGGATACACGATATTGAAGCATTGGTTTCGTAAGAAAGGC-TTTCTTCCCACCAATTTTTG
* * * * **
461954 TAAAGCCTAAGTTCATGCCTTAATTATGACCAACATGGATTCTAATAATGATCTTCATTCAGCTT
374 TAAAGTCTAAGTTCATGCCTCAATTATGACAAACATGGATTCTAGTAATGATCTTCATTCATTTT
* * *
462019 GTAATTAGGCACTATAAACATATTCTCCTCTTTAGGA
439 GTGATTAGGCACTATAAACACATTCTCCTCATTAGGA
* *
462056 TAAATGGTATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCATATTTTCCTTAAAATTA
1 TAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATTA
* * * *
462121 AAGTTCATCCCTTAAAAAAAGCAAGCATTGATTCTCATAACAGTCCCCATTCTTTTCATCATTGG
66 AAGTTCATCCCTTAAATAAAGCAAGCATTGATTCTCATAACAGTCTCCATTCTTTTCATGATTAG
* * **
462186 GAACCAAAAACACATTCCTTTCATTAGGATACATGACATTGACGCTTTGGTGTTGCAAGAAAAAT
131 GAACCAAAAACACATTCCTTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGC
* * * * *
462251 ATTT-TGTTCAACCATTTTTAATAGAATCAAAGTTTATCTCTTACATAAAACAAACATGAATAAT
196 ATTTCT-TTCAACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGT
** *
462315 CATACTAATCCTAATTTTTTTCAAGATTAGGCACCATAAACTTAGTTTTCTAATAAGGATACACG
260 CATACTAATCCCCATTTTTTTCAAGATTAGGCACCATAAAC-TAGTCTTCTAATAAGGATACACG
* * * * *
462380 ATATTGAAGCATTAGTTTCGTAAGAAAGGCTTTATTCCTAGCAATTTTTGTAAAGCCTAAGTTCA
324 ATATTGAAGCATTGGTTTCGTAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCA
* * * * * *
462445 TACCTCAATTGTGACAAACATGGATTCTAGTAATGATCTTCATTTATTTTATGATTTGGCACAAT
389 TGCCTCAATTATGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTAT
* * *
462510 AAAGACAATCTCCTCATTAAGA
454 AAACACATTCTCCTCATTAGGA
* * ** * * *
462532 TAAATGATACTGAAGATTTTCTTTTGTGTTGAAATCTTCTCTTTGCCCTAGTTTCCTTAAAATTA
1 TAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATTA
* * * * * * *
462597 AAGTTGATCTCTTAAATAAGGCAAGCACTGATTCTCATAACAATCTCCATTCTTTTCATTATTGG
66 AAGTTCATCCCTTAAATAAAGCAAGCATTGATTCTCATAACAGTCTCCATTCTTTTCATGATTAG
* **
462662 GAACCAAAAACACATTCCTTTCATTAGGATACATGGCATTGACACTTTGAG-GTCGCAAGAAAAG
131 GAACCAAAAACACATTCCTTTCATTAGGATACATGACATTGATGCTTTG-GTGTCGCAAGAAAAG
* * * * *
462726 CATTTCTTTCATCTATTTTTGATAGAATCAAAGTTTGTCTTTTAAATAAGACAAACAAGAATAGC
195 CATTTCTTTCAACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGT
* *** *
462791 CATACTAATCCCTATCCCTTTCAA-ATTTATGCA-C-----C-A------T-A-AAGGATACACG
260 CATACTAATCCCCATTTTTTTCAAGA-TTAGGCACCATAAACTAGTCTTCTAATAAGGATACACG
* * * *
462840 ATATT-AATGCTTTGGTTTTGTAAGAAAGGCTTTTTTCCCATCC-TTTTTTGTAAAGTCTAAGTT
324 ATATTGAA-GCATTGGTTTCGTAAGAAAGGCTTTCTTCCCA-CCAATTTTTGTAAAGTCTAAGTT
* * * * * * * **
462903 CGTGCCTCAACTAGGGCAAACATAGATTCTAGTAATGACCTTCACTCATTTTGTGATTAGATACT
387 CATGCCTCAATTATGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACT
* *
462968 TTAAACACATTCTCCTGATTAGGA
452 ATAAACACATTCTCCTCATTAGGA
* ** * * * *
462992 TAAATGATATT-AGTGATTTTTTTTTGCATAAAAATCTTTTCTTTACCTTATTTTGCTGAAAATT
1 TAAATGATATTGA-TGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATT
* * * * * * *
463056 AAAGATCATCCCTTAAATAAGGCCATCATTGTTTCTCATAATAGTTTCCATTCTTTTCATGATTC
65 AAAGTTCATCCCTTAAATAAAGCAAGCATTGATTCTCATAACAGTCTCCATTCTTTTCATGATT-
* * * *
463121 A--AAGCAAAAAACACATTCCTTTCATTAGCATACATGACATTGATGCATTGGTGTTGCAAGAAA
129 AGGAA-CCAAAAACACATTCCTTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAA
*
463184 AGTATTTCTTTCAACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATA
193 AGCATTTCTTTCAACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATA
* * ** * * *
463249 GTCATACTAATCCCCA-TTCTTTCAAGGGTTAGGCATAATAAACATAATCTTCTCAT-ATGACTA
258 GTCATACTAATCCCCATTTTTTTCAA-GATTAGGCACCATAAAC-TAGTCTTCTAATAAGGA-TA
* * * * * * * * * * * *
463312 CATGATGTTGATGCTTTGATTTTGCAAGTAAGGGTTTCTT-CCACCAATTTTTGGAAAATCTAAC
320 CACGATATTGAAGCATTGGTTTCGTAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAG
* * * *
463376 TTCGTGCCTCAATTTTGACAAACATGGATTCTATTAATGATCTTCATTCATTTTTTGATTAGGCA
385 TTCATGCCTCAATTATGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCA
* *
463441 CTATAAACATATTCTCCCCATTAGGA
450 CTATAAACACATTCTCCTCATTAGGA
* * * * * * * * * *
463467 TAAAAGATATGGCTAATTTTCTTTGGCATGTAAACCATTTCTTTGCCCTATTTTCATTAAAATCA
1 TAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATTA
* * * * * * *
463532 AAGTTCATCCCTTAAATAAAGTAAGCATTGATTCT-AGTGATAGTCTCCAATATTTTAATGGTTA
66 AAGTTCATCCCTTAAATAAAGCAAGCATTGATTCTCA-TAACAGTCTCCATTCTTTTCATGATTA
* * *
463596 GGAACCAGAAACACATTCTTTTCA-TAGGATACATGACATTGATGCTTT-GTGGTCACAAG-AAA
130 GGAACCAAAAACACATTCCTTTCATTAGGATACATGACATTGATGCTTTGGT-GTCGCAAGAAAA
* * *
463658 GCCATTTCTTTCAAACC-TTTTTGATAGAATCAAAGTTTGTCTTTTAAACAAGACAAACCTGAAT
194 G-CATTTCTTTC-AACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAAT
463722 AGTCATACTAATC
257 AGTCATACTAATC
463735 TAAAAGTTTA
Statistics
Matches: 1787, Mismatches: 302, Indels: 143
0.80 0.14 0.06
Matches are distributed among these distances:
459 13 0.01
460 362 0.20
461 2 0.00
462 1 0.00
466 1 0.00
468 2 0.00
469 100 0.06
470 6 0.00
471 2 0.00
472 21 0.01
473 11 0.01
474 102 0.06
475 266 0.15
476 497 0.28
477 4 0.00
480 46 0.03
481 205 0.11
482 9 0.01
483 9 0.01
484 22 0.01
485 3 0.00
486 5 0.00
487 98 0.05
ACGTcount: A:0.33, C:0.18, G:0.13, T:0.37
Consensus pattern (475 bp):
TAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATTA
AAGTTCATCCCTTAAATAAAGCAAGCATTGATTCTCATAACAGTCTCCATTCTTTTCATGATTAG
GAACCAAAAACACATTCCTTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGC
ATTTCTTTCAACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTC
ATACTAATCCCCATTTTTTTCAAGATTAGGCACCATAAACTAGTCTTCTAATAAGGATACACGAT
ATTGAAGCATTGGTTTCGTAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCATG
CCTCAATTATGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAA
ACACATTCTCCTCATTAGGA
Found at i:463113 original size:936 final size:933
Alignment explanation
Indices: 461100--463734 Score: 2801
Period size: 936 Copynumber: 2.8 Consensus size: 933
461090 TGAGCTCACG
* * * *
461100 TAAATGATATTCA-TGATTTTCTTTTGAATGGAAATCTTTTCTTTGCCCTATTTTTCTTAAAATC
1 TAAATGATATT-AGTGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCATATTTTCCTTAAAATT
* * * *
461164 AAAGTTTATCCCTTAAATAAGGCAAGCATTAATACTCGTAACAGTCTCCATTCTTTTCATGATTA
65 AAAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCATAACAGTCTCCATTCTTTTCATGATT-
* * * **
461229 GGAACCAAAAACACATTCCTTTTAATAGGATACATGACATTGATGCTTTGGAGTCACAAGAAAAG
129 GGAACCAAAAACACATTCCTTTCATTAGGATACATGACATTGATGCTTTGGTGTTGCAAGAAAAG
* * *
461294 CATTTCTTTCAACCCTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAA-AAACATGAACAG
194 TATTTCTTTCAACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAA-AACAAACATGAATAG
*
461358 TCATACTAATCCCATTCTTTTT--AGAATTAGGCACCATAAACTATTTCTTCTAATAAGGATACA
258 TCATACTAATCCCATT-TTTTTCAAG-ATTAGGCACCATAAACTAATT-TTCTAATAAGGATACA
* *
461421 CGATATTGATGCTTTGGTTTCATAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTT
320 CGATATTGATGC-TTAGTTTCGTAAGAAAGGCTTTCTT-CCACCAATTTTTGTAAAGTCTAAGTT
* * * * * * * **
461486 CATGTCTCAAATGAGGCAAACATGAATTCTAGTAATGACCTTCATTCATTTTGTGATTAGATACT
383 CATGCCTCAATTGTGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTATGATTAGGCACT
* * * * * * * *
461551 ATAAACAC-ATGCTCCTTATTACGATAAATGTTATTAATGATTTTGTTTTGCTTGGAAT-TTTTT
448 ATAAACACAAT-CTCCTCATTAAGATAAATGATATGAA-GATTTTCTTTTGGTTGAAATCTTTCT
* * * * ** * *
461614 TTACCATATTTTCCTTAAAA-T-CA-TTCATCCCATAAATTTGAAAAGCATCGATTCTCGTAATA
511 TTGCCCTATTTTCCTTAAAATTAAAGTTCATCCCTTAAATAAGGAAAGCAT-GATTCTCATAATA
* * * *
461676 GTCTCCATTCTTTTCAGGATTAGGAACCAAGAACACATTCTCTTT-AGTAGGACACATGACAATG
575 GTCTCCATTCTTTTCATGATTAGGAACCAAAAACACATTC-CTTTCA-TAGGATACATGACATTG
* * *
461740 ATGC-TTCAGTGTCGCAAGAAAAGCTTCTTTATCCACCATTTTATCCACCATTTTTGATAGAATC
638 ATGCTTTGAG-GTCGCAAGAAAAGC--CATT-T----C---TT-T-CATCATTTTTGATAGAATC
* * * * *
461804 -AAGTTTGTCTCTTAAATCAGACAAACCTGAATAGTCATACTAATCCCCATTCTTTTCAGGATTA
690 AAAGTTTGTCTTTTAAATAAGACAAACCTGAATAGTCATACTAATCCCCATCCCTTTCAGAATT-
* *
461868 GACACCATAAACTTAGCCTTCTAATAAGGATACACGTTATTGAAGCATTGGTTTCGTAACAAAGG
754 ------ATAAAC-TAGCC-TATAATAAGGATACACGATATTGAAGCATTGGTTTCGTAACAAAGG
* * * * * *
461933 CGTTTTTCCTACCAATTTTTGTAAAGCCTAAGTTCATGCCTTAATTATGACCAACATGGATTCTA
811 CGTTTTTCCCACCAATTTTTGTAAAGCCTAAGTTCATGCCTCAACTAGGACAAACATAGATTCTA
* * * * *
461998 ATAATGATCTTCATTCAGCTTGTAATTAGGCACTATAAACATATTCTCCTCTTTAGGA
876 ATAATGACCTTCACTCAGCTTGTAATTAGACACTATAAACACATTCTCCTCATTAGGA
*
462056 TAAATGGTATT-GATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCATATTTTCCTTAAAATT
1 TAAATGATATTAG-TGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCATATTTTCCTTAAAATT
* * * *
462120 AAAGTTCATCCCTTAAAAAAAGCAAGCATTGATTCTCATAACAGTCCCCATTCTTTTCATCATTG
65 AAAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCATAACAGTCTCCATTCTTTTCATGATT-
* *
462185 GGAACCAAAAACACATTCCTTTCATTAGGATACATGACATTGACGCTTTGGTGTTGCAAGAAAAA
129 GGAACCAAAAACACATTCCTTTCATTAGGATACATGACATTGATGCTTTGGTGTTGCAAGAAAAG
* * * *
462250 TATTT-TGTTCAACCATTTTTAATAGAATCAAAGTTTATCTCTTACATAAAACAAACATGAATAA
194 TATTTCT-TTCAACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAAACAAACATGAATAG
* *
462314 TCATACTAATCCTAATTTTTTTCAAGATTAGGCACCATAAACTTAGTTTTCTAATAAGGATACAC
258 TCATACTAATCC-CATTTTTTTCAAGATTAGGCACCATAAAC-TAATTTTCTAATAAGGATACAC
* * * *
462379 GATATTGAAGCATTAGTTTCGTAAGAAAGGCTTTATTCCTAGCAATTTTTGTAAAGCCTAAGTTC
321 GATATTGATGC-TTAGTTTCGTAAGAAAGGCTTTCTTCC-ACCAATTTTTGTAAAGTCTAAGTTC
* * * *
462444 ATACCTCAATTGTGACAAACATGGATTCTAGTAATGATCTTCATTTATTTTATGATTTGGCACAA
384 ATGCCTCAATTGTGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTATGATTAGGCACTA
*
462509 TAAAGACAATCTCCTCATTAAGATAAATGATACTGAAGATTTTCTTTTGTGTTGAAATCTTCTCT
449 TAAACACAATCTCCTCATTAAGATAAATGATA-TGAAGATTTTCTTTTG-GTTGAAATCTT-TCT
* * * * *
462574 TTGCCCTAGTTTCCTTAAAATTAAAGTTGATCTCTTAAATAAGGCAAGCACTGATTCTCATAACA
511 TTGCCCTATTTTCCTTAAAATTAAAGTTCATCCCTTAAATAAGGAAAGCA-TGATTCTCATAATA
* * * *
462639 ATCTCCATTCTTTTCATTATTGGGAACCAAAAACACATTCCTTTCATTAGGATACATGGCATTGA
575 GTCTCCATTCTTTTCATGATTAGGAACCAAAAACACATTCCTTTCA-TAGGATACATGACATTGA
**
462704 CACTTTGAGGTCGCAAGAAAAG-CATTTCTTTCATCTATTTTTGATAGAATCAAAGTTTGTCTTT
639 TGCTTTGAGGTCGCAAGAAAAGCCATTTCTTTCATC-ATTTTTGATAGAATCAAAGTTTGTCTTT
** * * **
462768 TAAATAAGACAAACAAGAATAGCCATACTAATCCCTATCCCTTTCA-AATT-TATGC-A-CC-AT
703 TAAATAAGACAAACCTGAATAGTCATACTAATCCCCATCCCTTTCAGAATTATAAACTAGCCTAT
* * * * *
462828 -A-AAGGATACACGATATT-AATGCTTTGGTTTTGTAAGAAAGGCTTTTTTCCCATCC-TTTTTT
768 AATAAGGATACACGATATTGAA-GCATTGGTTTCGTAACAAAGGCGTTTTTCCCA-CCAATTTTT
* * * * **
462889 GTAAAGTCTAAGTTCGTGCCTCAACTAGGGCAAACATAGATTCTAGTAATGACCTTCACTCATTT
831 GTAAAGCCTAAGTTCATGCCTCAACTAGGACAAACATAGATTCTAATAATGACCTTCACTCAGCT
* * * *
462954 TGTGATTAGATACTTTAAACACATTCTCCTGATTAGGA
896 TGTAATTAGACACTATAAACACATTCTCCTCATTAGGA
* ** * * * *
462992 TAAATGATATTAGTGATTTTTTTTTGCATAAAAATCTTTTCTTTACCTTATTTTGCTGAAAATTA
1 TAAATGATATTAGTGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCATATTTTCCTTAAAATTA
* * * * * * **
463057 AAGATCATCCCTTAAATAAGGCCATCATTGTTTCTCATAATAGTTTCCATTCTTTTCATGATTCA
66 AAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCATAACAGTCTCCATTCTTTTCATGATTGG
* * *
463122 AAGCAAAAAACACATTCCTTTCATTAGCATACATGACATTGATGCATTGGTGTTGCAAGAAAAGT
131 AA-CCAAAAACACATTCCTTTCATTAGGATACATGACATTGATGCTTTGGTGTTGCAAGAAAAGT
*
463187 ATTTCTTTCAACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTC
195 ATTTCTTTCAACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAAACAAACATGAATAGTC
* * ** * * * *
463252 ATACTAATCCCCA-TTCTTTCAAGGGTTAGGCATAATAAACATAATCTTCTCAT-ATGACTACAT
260 ATACTAAT-CCCATTTTTTTCAA-GATTAGGCACCATAAAC-TAATTTTCTAATAAGGA-TACAC
* * * * * * * * * *
463315 GATGTTGATGCTTTGATTTTGCAAGTAAGGGTTTCTTCCACCAATTTTTGGAAAATCTAACTTCG
321 GATATTGATGCTTAG-TTTCGTAAGAAAGGCTTTCTTCCACCAATTTTTGTAAAGTCTAAGTTCA
* * *
463380 TGCCTCAATTTTGACAAACATGGATTCTATTAATGATCTTCATTCATTTTTTGATTAGGCACTAT
385 TGCCTCAATTGTGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTATGATTAGGCACTAT
* * * * * * * *
463445 AAACATATTCTCCCCATTAGGATAAAAGATATGGCTA-ATTTTC-TTTGGCATGTAAACCATTTC
450 AAACACAATCTCCTCATTAAGATAAATGATAT-G-AAGATTTTCTTTTGG-TTG-AAATC-TTTC
* * * * *
463508 TTTGCCCTATTTTCATTAAAATCAAAGTTCATCCCTTAAATAAAGTAAGCATTGATTCT-AGTGA
510 TTTGCCCTATTTTCCTTAAAATTAAAGTTCATCCCTTAAATAAGGAAAGCA-TGATTCTCA-TAA
* * * * * *
463572 TAGTCTCCAATATTTTAATGGTTAGGAACCAGAAACACATTCTTTTCATAGGATACATGACATTG
573 TAGTCTCCATTCTTTTCATGATTAGGAACCAAAAACACATTCCTTTCATAGGATACATGACATTG
* * * *
463637 ATGCTTTGTGGTCACAAG-AAAGCCATTTCTTTCAAACCTTTTTGATAGAATCAAAGTTTGTCTT
638 ATGCTTTGAGGTCGCAAGAAAAGCCATTTCTTTC-ATCATTTTTGATAGAATCAAAGTTTGTCTT
*
463701 TTAAACAAGACAAACCTGAATAGTCATACTAATC
702 TTAAATAAGACAAACCTGAATAGTCATACTAATC
463735 TAAAAGTTTA
Statistics
Matches: 1414, Mismatches: 226, Indels: 100
0.81 0.13 0.06
Matches are distributed among these distances:
933 5 0.00
934 104 0.07
935 227 0.16
936 419 0.30
937 7 0.00
938 1 0.00
940 2 0.00
941 1 0.00
943 3 0.00
950 3 0.00
951 19 0.01
952 52 0.04
955 4 0.00
956 242 0.17
957 179 0.13
958 17 0.01
959 3 0.00
960 22 0.02
961 1 0.00
962 5 0.00
963 93 0.07
964 5 0.00
ACGTcount: A:0.33, C:0.18, G:0.13, T:0.37
Consensus pattern (933 bp):
TAAATGATATTAGTGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCATATTTTCCTTAAAATTA
AAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCATAACAGTCTCCATTCTTTTCATGATTGG
AACCAAAAACACATTCCTTTCATTAGGATACATGACATTGATGCTTTGGTGTTGCAAGAAAAGTA
TTTCTTTCAACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAAACAAACATGAATAGTCA
TACTAATCCCATTTTTTTCAAGATTAGGCACCATAAACTAATTTTCTAATAAGGATACACGATAT
TGATGCTTAGTTTCGTAAGAAAGGCTTTCTTCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTC
AATTGTGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTATGATTAGGCACTATAAACAC
AATCTCCTCATTAAGATAAATGATATGAAGATTTTCTTTTGGTTGAAATCTTTCTTTGCCCTATT
TTCCTTAAAATTAAAGTTCATCCCTTAAATAAGGAAAGCATGATTCTCATAATAGTCTCCATTCT
TTTCATGATTAGGAACCAAAAACACATTCCTTTCATAGGATACATGACATTGATGCTTTGAGGTC
GCAAGAAAAGCCATTTCTTTCATCATTTTTGATAGAATCAAAGTTTGTCTTTTAAATAAGACAAA
CCTGAATAGTCATACTAATCCCCATCCCTTTCAGAATTATAAACTAGCCTATAATAAGGATACAC
GATATTGAAGCATTGGTTTCGTAACAAAGGCGTTTTTCCCACCAATTTTTGTAAAGCCTAAGTTC
ATGCCTCAACTAGGACAAACATAGATTCTAATAATGACCTTCACTCAGCTTGTAATTAGACACTA
TAAACACATTCTCCTCATTAGGA
Found at i:464540 original size:32 final size:33
Alignment explanation
Indices: 464477--464544 Score: 102
Period size: 33 Copynumber: 2.1 Consensus size: 33
464467 CGTTACAAGC
**
464477 CAATGTATTGATACATTTTATGGTGTATCGATA
1 CAATGTATTGATACATACTATGGTGTATCGATA
*
464510 CAATGTATTGATACATACTGT-GTGTATCGATA
1 CAATGTATTGATACATACTATGGTGTATCGATA
464542 CAA
1 CAA
464545 GTTTGGCTAC
Statistics
Matches: 32, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
32 14 0.44
33 18 0.56
ACGTcount: A:0.32, C:0.12, G:0.18, T:0.38
Consensus pattern (33 bp):
CAATGTATTGATACATACTATGGTGTATCGATA
Found at i:467087 original size:13 final size:13
Alignment explanation
Indices: 467069--467094 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
467059 ATAATCCCCC
467069 TGTATCGATACAA
1 TGTATCGATACAA
467082 TGTATCGATACAA
1 TGTATCGATACAA
467095 AGAATGTTGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:471151 original size:15 final size:16
Alignment explanation
Indices: 471131--471163 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
471121 CAATCTTTTG
471131 TTCAAT-ATTTTCAAT
1 TTCAATAATTTTCAAT
*
471146 TTCAATAATTTTTAAT
1 TTCAATAATTTTCAAT
471162 TT
1 TT
471164 ATTATCTTCA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 6 0.38
16 10 0.62
ACGTcount: A:0.33, C:0.09, G:0.00, T:0.58
Consensus pattern (16 bp):
TTCAATAATTTTCAAT
Found at i:473230 original size:13 final size:13
Alignment explanation
Indices: 473212--473237 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
473202 ACATTTATGG
473212 TGTATCGATACAA
1 TGTATCGATACAA
473225 TGTATCGATACAA
1 TGTATCGATACAA
473238 ACTGTGTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:473247 original size:32 final size:31
Alignment explanation
Indices: 473190--473257 Score: 84
Period size: 32 Copynumber: 2.1 Consensus size: 31
473180 CGTTACAAGC
*
473190 CAATGTATCGATACATTTATGGTGTATCGATA
1 CAATGTATCGATACA-TAATGGTGTATCGATA
*
473222 CAATGTATCGATACA-AACTGTGTGTATTGATA
1 CAATGTATCGATACATAA-TG-GTGTATCGATA
473254 CAAT
1 CAAT
473258 TTTGGCTACT
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
30 1 0.03
31 2 0.06
32 29 0.91
ACGTcount: A:0.34, C:0.13, G:0.18, T:0.35
Consensus pattern (31 bp):
CAATGTATCGATACATAATGGTGTATCGATA
Found at i:474543 original size:477 final size:474
Alignment explanation
Indices: 473634--476306 Score: 3121
Period size: 477 Copynumber: 5.6 Consensus size: 474
473624 CCTAACATAC
* * *
473634 TCCCCATTCTTTTCAAGATTTGGCAACATAAACTTAGTCTTCTCATAACGA-TACTTGATATTGA
1 TCCCCATTC-TTTCAAGATTTGGCACCATAAACATAGTCTTCTCATAA-GACTACATGATATTGA
* * * *
473698 TGCTTTGGTTTCATAAGAAAGGCTTTTTTCTCACCAATTTTTATAAAGTCTAAGTTCAT-GCCTC
64 TGCTTTGGTTTCACAAGAAAGGCTTTTTTC-CATCAATTTTTGTAAAGTCTAACTTC-TCGCCTC
* * * *
473762 ATTTGTGATAAATATGGATTCTAGTAATGATCTTCATTCATTTTCTGATTAGGCAGTATAAACAC
127 AATTGTGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTCTGATTAGGCACTATAAACAC
** * * * * * **
473827 ATTCTCCTTATTAGGATAAATGATATTAATGATTTTCTTTTGAATGGAAAACTTTTTTTTGCATT
192 ATTCTCCTTATTAGGATAAACAATATTGATGATTTTCGTTTGCATGGAAATCTTTTCTTTGCCCT
* * * * *
473892 ATTTTCCTTAAAATTAAAGTTCATCCCTTAAATAAGGCAAGAATTGATTCTCTTAATAGTGTCCA
257 ATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCATAACAGTCTCCA
* * * ** *
473957 TTCTTTTCATGATTGGGAACCAAAAACACATTCC-TTCCATTAAGATACATGACATTGACACATT
322 TTCCTTTCATGATTGGGAACCAAAAACACATTCCATT-CAATAGGATACATGACATTGATGCTTT
* * **
474021 GGTGTCGCAAGAAAAGCATTTTTTTTCAACCATTTTTGGTAGAATCAAAGTTTGTCTCTTAAATA
386 GGTGTCGCAAGAAAAGCA-TTTCTTTCAACCATTTTTGATAGAATCAGTGTTTGTCTCTTAAATA
* *
474086 AGACAAACAAGAATAGTCCTACTAA
450 AGACAAACATGAATAGTCATACTAA
* * * ** * *
474111 TCCCGATTATTTTCGAGATTTGGCATTATAAACTTAGTCTTCTCATAAGGA-TACACGATATTGA
1 TCCCCATT-CTTTCAAGATTTGGCACCATAAACATAGTCTTCTCATAA-GACTACATGATATTGA
* *
474175 TGCATTT-GTTTCACAAGAAAGGGTTTATTTCGATCAATTTTTGTAAAGTCT-A-TGTCTGCGCC
64 TGC-TTTGGTTTCACAAGAAAGGCTTT-TTTCCATCAATTTTTGTAAAGTCTAACT-TCT-CGCC
* * * * *
474237 TTAATTGTGGCAAACATGGATTGTAATAATGATCTTCATTCATTTTCTGATTAGGCACTACAAAC
125 TCAATTGTGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTCTGATTAGGCACTATAAAC
* ***
474302 ACATTCTCCTTTTTAGGATAAACAATATTGATGATTTTCAAGTGCATGGAAATCTTTTCTTTGCC
190 ACATTCTCCTTATTAGGATAAACAATATTGATGATTTTCGTTTGCATGGAAATCTTTTCTTTGCC
*
474367 CTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCATAACAGCCTC
255 CTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCATAACAGTCTC
*
474432 CATTCCTTTCATGATTGGGAACCAAAAACACATTCCATTCAATAGGATTCATGACATTGATGCTT
320 CATTCCTTTCATGATTGGGAACCAAAAACACATTCCATTCAATAGGATACATGACATTGATGCTT
* ** *
474497 TGGAAGTCGCAAGAAAAGCATTTCCATCAACTATTTTTGATAGAATCAGTGTTTGTCTCTTAAAT
385 TGG-TGTCGCAAGAAAAGCATTTCTTTCAACCATTTTTGATAGAATCAGTGTTTGTCTCTTAAAT
474562 AAGACAAACATGAATAGTCATACTAA
449 AAGACAAACATGAATAGTCATACTAA
* *
474588 TCCCCATTCTTTCAAAGATTAGGCACCATAAACATAGTCTTCTCATAAGACTACATGATGTTGAT
1 TCCCCATTCTTTC-AAGATTTGGCACCATAAACATAGTCTTCTCATAAGACTACATGATATTGAT
* ** * *
474653 GCTTTGATTTTGCATGTAAA-GCTTTGCTTCCATCAATTTTTGTAAAGTCTAACTTCAT-GCCTC
65 GCTTTGGTTTCACAAG-AAAGGCTTT-TTTCCATCAATTTTTGTAAAGTCTAACTTC-TCGCCTC
* * * *
474716 AATTGTGACAAACATGGATTCTAGTAATGATCTTCATTCTTTTTGTGAATAGGCACTATAAACAT
127 AATTGTGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTCTGATTAGGCACTATAAACAC
* * * * * * *
474781 ATTCTACC-CATTAGGATAAAAAATATGGCTAATTTTC-TTTAGCATGTAAATCGTTTCTTTGCC
192 ATTCT-CCTTATTAGGATAAACAATATTGATGATTTTCGTTT-GCATGGAAATCTTTTCTTTGCC
* *
474844 CTATTTT--TTATAAATCAAAGTTCATCCCTTAAATGAA-GCAAGCATTAATTCTCGTAACAGTC
255 CTATTTTCCTTA-AAATCAAAGTTCATCCCTTAAAT-AAGGCAAGCATTGATTCTCATAACAGTC
*** ** * * * * * * * * *
474906 TCTGCTATTTTAATGGTTAGGAACTAGAAACACACTCCTTTCAATAGGATACATGACATTAACGC
318 TCCATTCCTTTCATGATTGGGAACCAAAAACACATTCCATTCAATAGGATACATGACATTGATGC
* * * * * **
474971 TTTGGGGTCACAAGAAAACCATTTCTTTTAACCCTTTTTGATAGAATCAAAGTTTGTCTCTTAAA
383 TTTGGTGTCGCAAGAAAAGCATTTCTTTCAACCATTTTTGATAGAATCAGTGTTTGTCTCTTAAA
*
475036 TAAGACAAACCTGAATAGTCATACTAA
448 TAAGACAAACATGAATAGTCATACTAA
* * * * *
475063 TCCCTATTCTTTTCAAGATTTTGCACCAAAAACTTAGTCTTCTCATAACGA-TAC-TCCATATTG
1 TCCCCATTC-TTTCAAGATTTGGCACCATAAACATAGTCTTCTCATAA-GACTACAT-GATATTG
* * * * *
475126 ATGCTTTGGTTCCATAAGAAAGGCTTTCTTCCCA-CTAATTTTTGAAAAGTCTAAGTTCAT-GCC
63 ATGCTTTGGTTTCACAAGAAAGGCTTT-TTTCCATC-AATTTTTGTAAAGTCTAACTTC-TCGCC
* * * * *
475189 TCATTTCTGACAAACATGGATTCTAGTAATTATCTTCATTCGTTTTCTGATTAGAG-ACCATAAA
125 TCAATTGTGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTCTGATTAG-GCACTATAAA
* * *
475253 CACATTCTCCTTATTAGGATAAATGAA-ATTGATCATTTTC-TCTTG-ATTGGAAATCTTTTCAT
189 CACATTCTCCTTATTAGGATAAA-CAATATTGATGATTTTCGT-TTGCA-TGGAAATCTTTTCTT
** * * *
475315 TGCGTTATTTTCCTTAAAATTAAAGTTCATCCGTTAGATAAGGCAAGCATTGATTCTCATAACAG
251 TGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCATAACAG
* * *
475380 TGTCCATTCCTTTCATGATTGGAAACCAAAAACACATTCCATTCAATAGGATAGATGACATTGAT
316 TCTCCATTCCTTTCATGATTGGGAACCAAAAACACATTCCATTCAATAGGATACATGACATTGAT
*
475445 GCTTTGGTGTCGCAAGAAAAGCATTTCTTTCAACCGTTTTTGATAGAATCAGTGTTTGTCTCTTA
381 GCTTTGGTGTCGCAAGAAAAGCATTTCTTTCAACCATTTTTGATAGAATCAGTGTTTGTCTCTTA
475510 AATAAGACAAACATGAATAGTCATACTAA
446 AATAAGACAAACATGAATAGTCATACTAA
* * * * * *
475539 TCCCCATTCTTTCAAGGATTAGGCACTATAAGCATAGTCTTGTCATAAGACTACATGTTGTTGAT
1 TCCCCATTCTTTCAA-GATTTGGCACCATAAACATAGTCTTCTCATAAGACTACATGATATTGAT
** * * *
475604 GCTTTGGTTTTGCAAGTAAGGCTTTTCTTCCACCAATTTTTGTAAAGTCTAACTTCGT-GCCTTA
65 GCTTTGGTTTCACAAGAAAGGCTTTT-TTCCATCAATTTTTGTAAAGTCTAACTTC-TCGCCTCA
* * * * * * *
475668 ATTGTGACAAATATGGATTGTAATGATGATCTTCATTCATTTTTTAACTTAGGCACTACAAACAC
128 ATTGTGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTCTGA-TTAGGCACTATAAACAC
* * * * * *
475733 ATTCTCCTTTTTAGGATAAACGATATTGATGATTTTTGTTTGCCTAGAAATCATTTCTTTGCCCT
192 ATTCTCCTTATTAGGATAAACAATATTGATGATTTTCGTTTGCATGGAAATCTTTTCTTTGCCCT
*
475798 ATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGGCAAGCATTGATGCTCATAACAGTCTCCA
257 ATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCATAACAGTCTCCA
*
475863 TTCCTTTCATGATTGGGAACCAAAAACACATTCCATTCAATAGGATACTTGACATTGATGCTTTG
322 TTCCTTTCATGATTGGGAACCAAAAACACATTCCATTCAATAGGATACATGACATTGATGCTTTG
* *
475928 GTGTCGCAAGAAAAGCATTTCTTTCAACCGTTTTTGATAGAATCAGTGTTTGCCTCTTAAATAAG
387 GTGTCGCAAGAAAAGCATTTCTTTCAACCATTTTTGATAGAATCAGTGTTTGTCTCTTAAATAAG
*
475993 ACAAACATGAATATTCATACTAA
452 ACAAACATGAATAGTCATACTAA
* * * *
476016 TCCCCATTCTTTCAAGGTTTAGGCACCATAAACATAGCCTTCTCATAAAACTACATGATGTTGAT
1 TCCCCATTCTTTCAAGATTT-GGCACCATAAACATAGTCTTCTCATAAGACTACATGATATTGAT
* ** * * * *
476081 GCTTTGATTTTGCATGTAAGGCTTTCCTCCCATCAATTTTTGTAAAGTCTAACTTCGT-GCCTCA
65 GCTTTGGTTTCACAAGAAAGGCTTT-TTTCCATCAATTTTTGTAAAGTCTAACTTC-TCGCCTCA
* * *
476145 ATTGTGACAAACATGGATTCTAGTAACGATTTTCATTCATTTTGTGATTAGGCACTATAAACACA
128 ATTGTGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTCTGATTAGGCACTATAAACACA
* * * * *
476210 TTCTTCTCATTAGGAT----AA-A-TGAT-A--TT-GATTGCATGTAAATCTTTTCCTTG-CCTA
193 TTCTCCTTATTAGGATAAACAATATTGATGATTTTCGTTTGCATGGAAATCTTTTCTTTGCCCTA
* * *
476264 GTTTTCGTTAAAATCAAAGTTCATCCCTTAACTATGGCAAGCA
258 -TTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGGCAAGCA
476307 AGAATTCTCG
Statistics
Matches: 1873, Mismatches: 278, Indels: 101
0.83 0.12 0.04
Matches are distributed among these distances:
465 4 0.00
466 57 0.03
467 2 0.00
469 1 0.00
470 4 0.00
471 1 0.00
472 1 0.00
474 8 0.00
475 290 0.15
476 463 0.25
477 1007 0.54
478 33 0.02
479 2 0.00
ACGTcount: A:0.31, C:0.18, G:0.14, T:0.37
Consensus pattern (474 bp):
TCCCCATTCTTTCAAGATTTGGCACCATAAACATAGTCTTCTCATAAGACTACATGATATTGATG
CTTTGGTTTCACAAGAAAGGCTTTTTTCCATCAATTTTTGTAAAGTCTAACTTCTCGCCTCAATT
GTGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTCTGATTAGGCACTATAAACACATTC
TCCTTATTAGGATAAACAATATTGATGATTTTCGTTTGCATGGAAATCTTTTCTTTGCCCTATTT
TCCTTAAAATCAAAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCATAACAGTCTCCATTCC
TTTCATGATTGGGAACCAAAAACACATTCCATTCAATAGGATACATGACATTGATGCTTTGGTGT
CGCAAGAAAAGCATTTCTTTCAACCATTTTTGATAGAATCAGTGTTTGTCTCTTAAATAAGACAA
ACATGAATAGTCATACTAA
Found at i:476031 original size:952 final size:946
Alignment explanation
Indices: 473634--476306 Score: 3311
Period size: 952 Copynumber: 2.8 Consensus size: 946
473624 CCTAACATAC
* * * *
473634 TCCCCATTCTTTTCAAGATTTGGCAACATAAACTTAGTCTTCTCATAACGA-TACTTGATATTGA
1 TCCCCATTC-TTTCAAGATTAGGC-ACATAAACATAGTCTTCTCATAA-GACTACATGATGTTGA
*** * * *
473698 TGCTTTGGTTTCATAAGAAAGGCTTTT-TTCTCACCAATTTTTATAAAGTCTAAGTTCATGCCTC
63 TGCTTTGGTTTTGCAAGTAAGGCTTTTCTTC-CACCAATTTTTGTAAAGTCTAACTTCATGCCTC
* * * * *
473762 ATTTGTGATAAATATGGATTCTAGTAATGATCTTCATTCATTTTCTGATTAGGCAGTATAAACAC
127 AATTGTGACAAATATGGATTCTAGTAATGATCTTCATTCATTTTTTAATTAGGCACTATAAACAC
* * * * * * **
473827 ATTCTCCTTATTAGGATAAATGATATTAATGATTTTCTTTTGAATGGAAAACTTTTTTTTGCATT
192 ATTCTCCTTATTAGGATAAAAGATATTGATGATTTTCTTTTGCAT-GAAATCATTTCTTTGCCCT
* * * * *
473892 ATTTTCCTTAAAATTAAAGTTCATCCCTTAAATAAGGCAAGAATTGATTCTCTTAATAGTGTCCA
256 ATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCATAACAGTCTCCA
* * * *
473957 TTCTTTTCATGATTGGGAACCAAAAACACATTCCTTCCATTAAGATACATGACATTGACACATTG
321 TTCTTTTCATGATTGGGAACCAAAAACACATTCCTT-CAATAGGATACATGACATTGACGCTTTG
* *
474022 GTGTCGCAAGAAAAGCATTTTTTTTCAACCATTTTTGGTAGAATCAAAGTTTGTCTCTTAAATAA
385 GTGTCGCAAGAAAAGCA-TTTCTTTCAACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAA
* * * * * **
474087 GACAAACAAGAATAGTCCTACTAATCCCGATTATTTTCGAGATTTGGCATTATAAACTTAGTCTT
449 GACAAACATGAATAGTCATACTAATCCCCATT-CTTTCAAGATTTGGCACCATAAACTTAGTCTT
* * * * * * * *
474152 CTCATAAGGATACACGATATTGATGCATTT-GTTTCACAAGAAAGGGTTTATTTCGATCAATTTT
513 CTCATAA-GATACTCCATATTGATGC-TTTGGTTCCATAAGAAAGGCTTTCTTCCCATCAATTTT
* * * * *
474216 TGTAAAGTCTATG-TCTGCGCCTTAATTGTGGCAAACATGGATTGTAATAATGATCTTCATTCAT
576 TGTAAAGTCTAAGTTCT--GCCTCAATTGTGACAAACATGGATTCTAGTAATGATCTTCATTCAT
* * * *
474280 TTTCTGATTAGGCACTACAAACACATTCTCCTTTTTAGGATAAA-CAATATTGATGATTTTCAAG
639 TTTCTGATTAGGCACTATAAACACATTCTCCTTATTAGGATAAATGAA-ATTGATCATTTTCAAG
*
474344 TGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGGCAA
703 TGCATGGAAATCTTTTCATTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGGCAA
*
474409 GCATTGATTCTCATAACAGCCTCCATTCCTTTCATGATTGGGAACCAAAAACACATTCCATTCAA
768 GCATTGATTCTCATAACAGCCTCCATTCCTTTCATGATTGGAAACCAAAAACACATTCCATTCAA
* *
474474 TAGGATTCATGACATTGATGCTTTGGAAGTCGCAAGAAAAGCATTTCCATCAACTATTTTTGATA
833 TAGGATACATGACATTGATGCTTTGGAAGTCGCAAGAAAAGCATTTCCATCAACCATTTTTGATA
474539 GAATCAGTGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAA
898 GAATCAGTGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAA
474588 TCCCCATTCTTTCAAAGATTAGGCACCATAAACATAGTCTTCTCATAAGACTACATGATGTTGAT
1 TCCCCATTCTTTC-AAGATTAGGCA-CATAAACATAGTCTTCTCATAAGACTACATGATGTTGAT
* * * * *
474653 GCTTTGATTTTGCATGTAAAGCTTTGCTTCCATCAATTTTTGTAAAGTCTAACTTCATGCCTCAA
64 GCTTTGGTTTTGCAAGTAAGGCTTTTCTTCCACCAATTTTTGTAAAGTCTAACTTCATGCCTCAA
* *
474718 TTGTGACAAACATGGATTCTAGTAATGATCTTCATTC-TTTTTGTGAA-TAGGCACTATAAACAT
129 TTGTGACAAATATGGATTCTAGTAATGATCTTCATTCATTTTT-T-AATTAGGCACTATAAACAC
* * * * * * *
474781 ATTCTACC-CATTAGGATAAAAAATATGGCTAATTTTCTTTAGCATGTAAATCGTTTCTTTGCCC
192 ATTCT-CCTTATTAGGATAAAAGATATTGATGATTTTCTTTTGCATG-AAATCATTTCTTTGCCC
* *
474845 TATTTT--TTATAAATCAAAGTTCATCCCTTAAATGAA-GCAAGCATTAATTCTCGTAACAGTCT
255 TATTTTCCTTA-AAATCAAAGTTCATCCCTTAAAT-AAGGCAAGCATTGATTCTCATAACAGTCT
*** * * * * * * * *
474907 CTGCTATTTTAATGGTTAGGAACTAGAAACACACTCCTTTCAATAGGATACATGACATTAACGCT
318 CCATTCTTTTCATGATTGGGAACCAAAAACACATTCC-TTCAATAGGATACATGACATTGACGCT
* * * * *
474972 TTGGGGTCACAAGAAAACCATTTCTTTTAACCCTTTTTGATAGAATCAAAGTTTGTCTCTTAAAT
382 TTGGTGTCGCAAGAAAAGCATTTCTTTCAACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAAT
* * * *
475037 AAGACAAACCTGAATAGTCATACTAATCCCTATTCTTTTCAAGATTTTGCACCAAAAACTTAGTC
447 AAGACAAACATGAATAGTCATACTAATCCCCATTC-TTTCAAGATTTGGCACCATAAACTTAGTC
475102 TTCTCATAACGATACTCCATATTGATGCTTTGGTTCCATAAGAAAGGCTTTCTTCCCA-CTAATT
511 TTCTCATAA-GATACTCCATATTGATGCTTTGGTTCCATAAGAAAGGCTTTCTTCCCATC-AATT
* * * * *
475166 TTTGAAAAGTCTAAGTTCATGCCTCATTTCTGACAAACATGGATTCTAGTAATTATCTTCATTCG
574 TTTGTAAAGTCTAAGTTC-TGCCTCAATTGTGACAAACATGGATTCTAGTAATGATCTTCATTCA
* **
475231 TTTTCTGATTAGAG-ACCATAAACACATTCTCCTTATTAGGATAAATGAAATTGATCATTTTCTC
638 TTTTCTGATTAG-GCACTATAAACACATTCTCCTTATTAGGATAAATGAAATTGATCATTTTCAA
* ** * * *
475295 TTG-ATTGGAAATCTTTTCATTGCGTTATTTTCCTTAAAATTAAAGTTCATCCGTTAGATAAGGC
702 GTGCA-TGGAAATCTTTTCATTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGGC
**
475359 AAGCATTGATTCTCATAACAGTGTCCATTCCTTTCATGATTGGAAACCAAAAACACATTCCATTC
766 AAGCATTGATTCTCATAACAGCCTCCATTCCTTTCATGATTGGAAACCAAAAACACATTCCATTC
* * ** *
475424 AATAGGATAGATGACATTGATGCTTTGG-TGTCGCAAGAAAAGCATTTCTTTCAACCGTTTTTGA
831 AATAGGATACATGACATTGATGCTTTGGAAGTCGCAAGAAAAGCATTTCCATCAACCATTTTTGA
475488 TAGAATCAGTGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAA
896 TAGAATCAGTGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAA
* * *
475539 TCCCCATTCTTTCAAGGATTAGGCACTATAAGCATAGTCTTGTCATAAGACTACATGTTGTTGAT
1 TCCCCATTCTTTCAA-GATTAGGCAC-ATAAACATAGTCTTCTCATAAGACTACATGATGTTGAT
* *
475604 GCTTTGGTTTTGCAAGTAAGGCTTTTCTTCCACCAATTTTTGTAAAGTCTAACTTCGTGCCTTAA
64 GCTTTGGTTTTGCAAGTAAGGCTTTTCTTCCACCAATTTTTGTAAAGTCTAACTTCATGCCTCAA
* * * *
475669 TTGTGACAAATATGGATTGTAATGATGATCTTCATTCATTTTTTAACTTAGGCACTACAAACACA
129 TTGTGACAAATATGGATTCTAGTAATGATCTTCATTCATTTTTTAA-TTAGGCACTATAAACACA
* * *
475734 TTCTCCTTTTTAGGATAAACGATATTGATGATTTT-TGTTTGCCTAGAAATCATTTCTTTGCCCT
193 TTCTCCTTATTAGGATAAAAGATATTGATGATTTTCT-TTTGCAT-GAAATCATTTCTTTGCCCT
*
475798 ATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGGCAAGCATTGATGCTCATAACAGTCTCCA
256 ATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCATAACAGTCTCCA
* * *
475863 TTCCTTTCATGATTGGGAACCAAAAACACATTCCATTCAATAGGATACTTGACATTGATGCTTTG
321 TTCTTTTCATGATTGGGAACCAAAAACACATTCC-TTCAATAGGATACATGACATTGACGCTTTG
* ** *
475928 GTGTCGCAAGAAAAGCATTTCTTTCAACCGTTTTTGATAGAATCAGTGTTTGCCTCTTAAATAAG
385 GTGTCGCAAGAAAAGCATTTCTTTCAACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAG
* * * *
475993 ACAAACATGAATATTCATACTAATCCCCATTCTTTCAAGGTTTAGGCACCATAAACATAGCCTTC
450 ACAAACATGAATAGTCATACTAATCCCCATTCTTTCAAGATTT-GGCACCATAAACTTAGTCTTC
* * * * *
476058 TCATAA-A-ACTACATGATGTTGATGCTTTGATTTTGCAT--GTAAGGCTTTCCTCCCATCAATT
514 TCATAAGATACTCCAT-A--TTGATGCTTTG--GTTCCATAAGAAAGGCTTTCTTCCCATCAATT
* * *
476119 TTTGTAAAGTCTAACTTCGTGCCTCAATTGTGACAAACATGGATTCTAGTAACGATTTTCATTCA
574 TTTGTAAAGTCTAAGTTC-TGCCTCAATTGTGACAAACATGGATTCTAGTAATGATCTTCATTCA
* * * *
476184 TTTTGTGATTAGGCACTATAAACACATTCTTCTCATTAGGATAAATGATATTG---A---T----
638 TTTTCTGATTAGGCACTATAAACACATTCTCCTTATTAGGATAAATGAAATTGATCATTTTCAAG
* * * * *
476239 TGCATGTAAATCTTTTCCTTG-CCTAGTTTTCGTTAAAATCAAAGTTCATCCCTTAACTATGGCA
703 TGCATGGAAATCTTTTCATTGCCCTA-TTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGGCA
476303 AGCA
767 AGCA
476307 AGAATTCTCG
Statistics
Matches: 1473, Mismatches: 206, Indels: 91
0.83 0.12 0.05
Matches are distributed among these distances:
942 2 0.00
943 53 0.04
944 1 0.00
947 1 0.00
950 12 0.01
951 241 0.16
952 477 0.32
953 465 0.32
954 210 0.14
955 11 0.01
ACGTcount: A:0.31, C:0.18, G:0.14, T:0.37
Consensus pattern (946 bp):
TCCCCATTCTTTCAAGATTAGGCACATAAACATAGTCTTCTCATAAGACTACATGATGTTGATGC
TTTGGTTTTGCAAGTAAGGCTTTTCTTCCACCAATTTTTGTAAAGTCTAACTTCATGCCTCAATT
GTGACAAATATGGATTCTAGTAATGATCTTCATTCATTTTTTAATTAGGCACTATAAACACATTC
TCCTTATTAGGATAAAAGATATTGATGATTTTCTTTTGCATGAAATCATTTCTTTGCCCTATTTT
CCTTAAAATCAAAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCATAACAGTCTCCATTCTT
TTCATGATTGGGAACCAAAAACACATTCCTTCAATAGGATACATGACATTGACGCTTTGGTGTCG
CAAGAAAAGCATTTCTTTCAACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAAC
ATGAATAGTCATACTAATCCCCATTCTTTCAAGATTTGGCACCATAAACTTAGTCTTCTCATAAG
ATACTCCATATTGATGCTTTGGTTCCATAAGAAAGGCTTTCTTCCCATCAATTTTTGTAAAGTCT
AAGTTCTGCCTCAATTGTGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTCTGATTAGG
CACTATAAACACATTCTCCTTATTAGGATAAATGAAATTGATCATTTTCAAGTGCATGGAAATCT
TTTCATTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCA
TAACAGCCTCCATTCCTTTCATGATTGGAAACCAAAAACACATTCCATTCAATAGGATACATGAC
ATTGATGCTTTGGAAGTCGCAAGAAAAGCATTTCCATCAACCATTTTTGATAGAATCAGTGTTTG
TCTCTTAAATAAGACAAACATGAATAGTCATACTAA
Found at i:476049 original size:159 final size:159
Alignment explanation
Indices: 475404--476049 Score: 348
Period size: 159 Copynumber: 4.1 Consensus size: 159
475394 ATGATTGGAA
*
475404 ACCAAAAACACATTCCATTCAATAGGATAGATGACATTGATGCTTTGGTGTCGCAAGAAAAGCAT
1 ACCAAAAACACATTCCATTCAATAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCAT
* *
475469 TTCTTTCAACCGTTTTTGATAGAATCAGTGTTTGTCTCTTAAATAAGACAAACATGAATAGTCAT
66 TTCTTTCAACCGTTTTTGATAGAATCAGTGTTTG-CCCTTAAATAAGACAAACATGAATATTCAT
475534 -ACTAATCCCCATTCTTTCAAGGATTAGGC
130 AACTAATCCCCATTCTTTCAAGGATTAGGC
* * * * * * * *** * * * *
475563 ACTATAAGCATAGT-CTTGTC-ATAAGACTACATGTTGTTGATGCTTTGGTTTTGCAAGTAAGGC
1 ACCAAAAACACATTCCAT-TCAATAGGA-TACATGACATTGATGCTTTGGTGTCGCAAGAAAAGC
* * * * * * ** * *
475626 TTTTC-TTCCACCAATTTTTG-TA-AAGTCTAACT-TCGTG-CCTTAATTGTGACAAATATGGAT
64 ATTTCTTTCAACC-GTTTTTGATAGAA-TC--AGTGT-TTGCCCTTAAATAAGACAAACATGAAT
* * * ** * *
475686 -TGTAATGA-TGATCTTCATTCATTTTTTAA--CTTAGGC
124 AT-TCATAACTAATCCCCATTC---TTTCAAGGATTAGGC
* * * ** * * * * * * * *
475722 ACTACAAACACATTCTCCTT-TTTAGGATAAACGATATTGATGATTT-TTGTTTGCCTAG-AAAT
1 ACCAAAAACACATTC-CATTCAATAGGATACATGACATTGATGCTTTGGTG-TCG-CAAGAAAAG
** * ** * *
475784 CATTTCTTTGC--CC-TATTTTCCTTAAAATCAAAGTTCAT-CCCTTAAATAAGGCAAGCATTG-
63 CATTTCTTT-CAACCGT-TTTT-GATAGAATCAGTGTT--TGCCCTTAAATAAGACAAACA-TGA
** * * * * *
475844 ATGCTCATAAC-AGTCTCCATTCCTTTC-ATGATTGGGA
122 ATATTCATAACTAATCCCCATT-CTTTCAAGGATTAGGC
*
475881 ACCAAAAACACATTCCATTCAATAGGATACTTGACATTGATGCTTTGGTGTCGCAAGAAAAGCAT
1 ACCAAAAACACATTCCATTCAATAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCAT
475946 TTCTTTCAACCGTTTTTGATAGAATCAGTGTTTGCCTCTTAAATAAGACAAACATGAATATTCAT
66 TTCTTTCAACCGTTTTTGATAGAATCAGTGTTTGCC-CTTAAATAAGACAAACATGAATATTCAT
*
476011 -ACTAATCCCCATTCTTTCAAGGTTTAGGC
130 AACTAATCCCCATTCTTTCAAGGATTAGGC
*
476040 ACCATAAACA
1 ACCAAAAACA
476050 TAGCCTTCTC
Statistics
Matches: 342, Mismatches: 101, Indels: 88
0.64 0.19 0.17
Matches are distributed among these distances:
157 5 0.01
158 73 0.21
159 198 0.58
160 52 0.15
161 14 0.04
ACGTcount: A:0.31, C:0.19, G:0.15, T:0.35
Consensus pattern (159 bp):
ACCAAAAACACATTCCATTCAATAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCAT
TTCTTTCAACCGTTTTTGATAGAATCAGTGTTTGCCCTTAAATAAGACAAACATGAATATTCATA
ACTAATCCCCATTCTTTCAAGGATTAGGC
Found at i:476456 original size:22 final size:21
Alignment explanation
Indices: 476431--476472 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
476421 ATCTCTTAAA
476431 TAAGACAAAAATGTTTTCAAGT
1 TAAG-CAAAAATGTTTTCAAGT
* *
476453 TAAGTATAAATGTTTTCAAG
1 TAAGCAAAAATGTTTTCAAG
476473 GCTTAATATG
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 14 0.78
22 4 0.22
ACGTcount: A:0.43, C:0.07, G:0.14, T:0.36
Consensus pattern (21 bp):
TAAGCAAAAATGTTTTCAAGT
Found at i:476723 original size:13 final size:13
Alignment explanation
Indices: 476705--476729 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
476695 ACACACAGTA
476705 TGTATCGATACAT
1 TGTATCGATACAT
476718 TGTATCGATACA
1 TGTATCGATACA
476730 CCATAAAATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:476726 original size:32 final size:33
Alignment explanation
Indices: 476685--476752 Score: 102
Period size: 33 Copynumber: 2.1 Consensus size: 33
476675 GTAGCCAAAC
**
476685 TTGTATCGATACA-CACAGTATGTATCGATACA
1 TTGTATCGATACACCACAAAATGTATCGATACA
*
476717 TTGTATCGATACACCATAAAATGTATCGATACA
1 TTGTATCGATACACCACAAAATGTATCGATACA
476750 TTG
1 TTG
476753 GCTTGTAACG
Statistics
Matches: 32, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
32 13 0.41
33 19 0.59
ACGTcount: A:0.35, C:0.18, G:0.15, T:0.32
Consensus pattern (33 bp):
TTGTATCGATACACCACAAAATGTATCGATACA
Found at i:481891 original size:20 final size:20
Alignment explanation
Indices: 481866--481930 Score: 81
Period size: 20 Copynumber: 3.6 Consensus size: 20
481856 ATCGGTACAA
481866 TGTATCGATACACAAAAAAT
1 TGTATCGATACACAAAAAAT
481886 TGTATCGAT--AC----AA-
1 TGTATCGATACACAAAAAAT
481899 TGTATCGATACACAAAAAAT
1 TGTATCGATACACAAAAAAT
481919 TGTATCGATACA
1 TGTATCGATACA
481931 TTGGCTTGTA
Statistics
Matches: 38, Mismatches: 0, Indels: 14
0.73 0.00 0.27
Matches are distributed among these distances:
13 9 0.24
14 2 0.05
15 2 0.05
18 2 0.05
19 2 0.05
20 21 0.55
ACGTcount: A:0.45, C:0.15, G:0.12, T:0.28
Consensus pattern (20 bp):
TGTATCGATACACAAAAAAT
Found at i:481898 original size:33 final size:33
Alignment explanation
Indices: 481834--481930 Score: 151
Period size: 33 Copynumber: 3.0 Consensus size: 33
481824 TAGCCAAACT
* ** *
481834 TGTATCGATACACCAAGTA-TGTATCGGTACAA
1 TGTATCGATACACAAAAAATTGTATCGATACAA
481866 TGTATCGATACACAAAAAATTGTATCGATACAA
1 TGTATCGATACACAAAAAATTGTATCGATACAA
481899 TGTATCGATACACAAAAAATTGTATCGATACA
1 TGTATCGATACACAAAAAATTGTATCGATACA
481931 TTGGCTTGTA
Statistics
Matches: 60, Mismatches: 4, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
32 16 0.27
33 44 0.73
ACGTcount: A:0.41, C:0.16, G:0.14, T:0.28
Consensus pattern (33 bp):
TGTATCGATACACAAAAAATTGTATCGATACAA
Found at i:481904 original size:13 final size:13
Alignment explanation
Indices: 481886--481910 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
481876 CACAAAAAAT
481886 TGTATCGATACAA
1 TGTATCGATACAA
481899 TGTATCGATACA
1 TGTATCGATACA
481911 CAAAAAATTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:484163 original size:21 final size:21
Alignment explanation
Indices: 484130--484174 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
484120 TTGCAAGTTG
*
484130 AAATAAAGAAGTTGGCTAATGA
1 AAATAAAGAAGTTAGCTAA-GA
*
484152 AAATAATG-AGTTAGCTAAGA
1 AAATAAAGAAGTTAGCTAAGA
484172 AAA
1 AAA
484175 ATGAAAACTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 5 0.24
21 9 0.43
22 7 0.33
ACGTcount: A:0.53, C:0.04, G:0.20, T:0.22
Consensus pattern (21 bp):
AAATAAAGAAGTTAGCTAAGA
Found at i:485997 original size:15 final size:15
Alignment explanation
Indices: 485977--486007 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
485967 TAAAAATGTC
*
485977 CAAAATGAGGAAGCT
1 CAAAATGAAGAAGCT
485992 CAAAATGAAGAAGCT
1 CAAAATGAAGAAGCT
486007 C
1 C
486008 CATAAGAAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.48, C:0.16, G:0.23, T:0.13
Consensus pattern (15 bp):
CAAAATGAAGAAGCT
Found at i:488095 original size:13 final size:13
Alignment explanation
Indices: 488077--488115 Score: 60
Period size: 13 Copynumber: 3.0 Consensus size: 13
488067 ACATTTTTCT
488077 TTGTATCGATACA
1 TTGTATCGATACA
*
488090 TTGTATCGATACG
1 TTGTATCGATACA
*
488103 TTATATCGATACA
1 TTGTATCGATACA
488116 GAGTGATTAT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
13 23 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:488279 original size:20 final size:20
Alignment explanation
Indices: 488236--488281 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 20
488226 AAATCTTTTG
488236 CAAAATACTTGTTTTTCACTT
1 CAAAATACTTGTTTTTCAC-T
*
488257 CAAATTACTTCGTTTTTCA-T
1 CAAAATACTT-GTTTTTCACT
488277 CAAAA
1 CAAAA
488282 CCAGCATCAA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
20 5 0.23
21 9 0.41
22 8 0.36
ACGTcount: A:0.33, C:0.20, G:0.04, T:0.43
Consensus pattern (20 bp):
CAAAATACTTGTTTTTCACT
Found at i:492897 original size:13 final size:13
Alignment explanation
Indices: 492879--492903 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
492869 CAGCATTCTT
492879 TGTATCGATACAC
1 TGTATCGATACAC
492892 TGTATCGATACA
1 TGTATCGATACA
492904 GGGGGATTAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.20, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAC
Found at i:495352 original size:18 final size:19
Alignment explanation
Indices: 495310--495353 Score: 54
Period size: 20 Copynumber: 2.3 Consensus size: 19
495300 TCAAAACCCT
*
495310 AAAAAGTATCGATACACATT
1 AAAAAGTATCGATA-ACATG
*
495330 TAAAAGTATCGAT-ACATG
1 AAAAAGTATCGATAACATG
495348 AAAAAG
1 AAAAAG
495354 ATGTATCGAT
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
18 9 0.43
20 12 0.57
ACGTcount: A:0.52, C:0.11, G:0.14, T:0.23
Consensus pattern (19 bp):
AAAAAGTATCGATAACATG
Found at i:495461 original size:33 final size:32
Alignment explanation
Indices: 495398--495465 Score: 91
Period size: 33 Copynumber: 2.1 Consensus size: 32
495388 GTAGCCAAAC
** *
495398 TTGTATCGATACACACAGTATGTATTGATACA
1 TTGTATCGATACACACAAAATGTATCGATACA
*
495430 TTGTATCGATACACCATAAAATGTATCGATACA
1 TTGTATCGATACA-CACAAAATGTATCGATACA
495463 TTG
1 TTG
495466 GCTTGTAACG
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
32 13 0.42
33 18 0.58
ACGTcount: A:0.35, C:0.16, G:0.15, T:0.34
Consensus pattern (32 bp):
TTGTATCGATACACACAAAATGTATCGATACA
Found at i:496760 original size:475 final size:472
Alignment explanation
Indices: 495744--497556 Score: 2132
Period size: 475 Copynumber: 3.8 Consensus size: 472
495734 AAGAGTTTAG
* * * * * * *
495744 TGCCTCAACTGGGGCAAACATGGATTCTAGTAATGACCTTCATTCATTTTGTGATTAGGCATTTT
1 TGCCTCAATTGTGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTCTGATTAGGCACTAT
*
495809 AAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTCCTTTTGCATGGAAATCTTTTCTT
66 AAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCAT-GAAATCTTTTCTT
* * * * * * ** * * *
495874 TACCATATTTTACTGAAAGTTAAAGTTCATCCCTTAAGTAAGGCAAATATTGATTGTCGTAATAG
130 TACCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCATAACAG
* * * * * *
495939 TCT-TCATTTTTTTCATGATTTGGAACAAAAAACTCCTTCCTTCCATTAGCATACATGACATTGA
195 TCTCT-ATTCTTTTCATGATTGGGAACCAAAAACACATTCCTTCCATTAGGATACATGACATTGA
* *
496003 TGCATTGGTGTCGCAAGAAAAGTATTTCTTTTAACCATTTTTGATAGAATCAAAGTTTGTCTCTT
259 TGCATTGGTGTCGCAAGAAAAGCATTTCTTTCAACCATTTTTGATAGAATCAAAGTTTGTCTCTT
* * *
496068 AAATAAGAGAAACATGAATAGTCATACTAATCCC-TACTCTTTCAAGGATTGGGCACCATAAACA
324 AAATAAGACAAACATGAATAGTCATACTAATCCCGT--TCTTTCAAGGATTTGGCACCATAAACT
* * *
496132 TAGTCTTCTCATAAGACTACATGATGTTGATGCTTTGATT-TTGCAAGTAAGGCTTTCCTTCCAC
387 TAGTCTTCTCATAAGA-TACATGATATTGATGCTTTGATTCTT--AAGAAAGGCTTTACTTCCAC
* * **
496196 CAATTTTGGTAAAGTCTAACTTTG
449 CAATTTTTGTAAAGTCTAAGTTCA
* * * *
496220 TGCATCAATTGTGACAAACAAGGATTCTTGTAATGATCTTCATTCATTTTGTGATTAGGCACTAT
1 TGCCTCAATTGTGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTCTGATTAGGCACTAT
* ** * * * *
496285 AAACATC-TTCTCGC-CATTACGATAAAACATATTGATAATTTTCTTTAGCATGTAAACCGTTTC
66 AAACA-CATTCTC-CTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATG-AAATCTTTTC
* * * *
496348 TTTACCCGATTTTCGTTAAAATCAAAGTTTATCCCTTAAATAAAGCAAGCATTGATTCTCATAAC
128 TTTACCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCATAAC
* * * * * * * * * * * *
496413 AATCTCTACTATTTTAATGGTTAGGAACTAGAAACACATTGCTTTCATTAGGATATATGACATTA
193 AGTCTCTATTCTTTTCATGATTGGGAACCAAAAACACATTCCTTCCATTAGGATACATGACATTG
* * * * * *
496478 ATGCTTTGGGGTCGCAAGAAAAGCATTTATTTCAACCCTTTTTAATAGAATCAAAGTTTATCTCT
258 ATGCATTGGTGTCGCAAGAAAAGCATTTCTTTCAACCATTTTTGATAGAATCAAAGTTTGTCTCT
* * *
496543 TAAATAAGACAAACCTGAATAGTCATACTAATCCCGTTCTTTCCACGATTTGGCACCATAAACTT
323 TAAATAAGACAAACATGAATAGTCATACTAATCCCGTTCTTTCAAGGATTTGGCACCATAAACTT
* *
496608 AGTCTTCTCATAACGATACATGATATTGATGCTTTGGCTTCTTAAGAAAGGCCTT-CTTCCCACC
388 AGTCTTCTCATAA-GATACATGATATTGATGCTTT-GATTCTTAAGAAAGGCTTTACTT-CCACC
496672 AATTTTTGTAAAGTCTAAGTTCA
450 AATTTTTGTAAAGTCTAAGTTCA
** * *
496695 TGCCTCGTTTGTGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTCTAATTAGACACTAT
1 TGCCTCAATTGTGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTCTGATTAGGCACTAT
* * * * * * * *
496760 AAACATATTCTCCTTAGTAGGATAAATGATATTGATGATATTCTTTTGAATAGAATTCTTTTGTA
66 AAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCAT-GAAATCTTTTCTT
* * * *
496825 TGCCTTATTTTCCTTAAAATTAAAGTTCATCCCTTAAATATGGCAAGCATTGATTCTCATAACAG
130 TACCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCATAACAG
* *
496890 TCTTTATTCTTTTCATGATTGGGAACCAAAAACACATTCCTTCCATTAGGATACATGACATTGAC
195 TCTCTATTCTTTTCATGATTGGGAACCAAAAACACATTCCTTCCATTAGGATACATGACATTGAT
* *
496955 ACATTGGTGTCGCAAGAAAAGCATTTCTTTCAACCATTTTTGATAAAATCAAAGTTTGTCTCTTA
260 GCATTGGTGTCGCAAGAAAAGCATTTCTTTCAACCATTTTTGATAGAATCAAAGTTTGTCTCTTA
* * ** * **
497020 AATAAGACAAATAAGAATAGTCATACTAATCTTGATTATTTTC-AGGATTTGGCATTATAAACTT
325 AATAAGACAAACATGAATAGTCATACTAATCCCG-TT-CTTTCAAGGATTTGGCACCATAAACTT
* * * * * * *
497084 AGTCTTCTCATAAGGATGCACGATATTGATGATTTTGTTTCGTAA-AAAGGGTTTAATTCCACCA
388 AGTCTTCTCATAA-GATACATGATATTGATG-CTTTGATTCTTAAGAAAGGCTTTACTTCCACCA
* ** *
497148 ATATTTGTAAAGAGTATGTTCA
451 ATTTTTGTAAAGTCTAAGTTCA
* * * * * * * *
497170 CGCCTCAATTGTTACAAACATAGATTGTAATAACGATCTTTATTCATTTTCTGATTAGGCACTAC
1 TGCCTCAATTGTGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTCTGATTAGGCACTAT
* * * *
497235 AAACACATTCTCTTTATTAGGATACATGATATTGATGATTTTTTTTTGCATGAAAATCTTTTCTT
66 AAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATG-AAATCTTTTCTT
* *
497300 TGCCCTATTTTCCTTAGAATCAAAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCATAACAG
130 TACCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCATAACAG
* * *
497365 TCTCTATTCCTTTCATGATTGGGAACCAAAAGCACATTCCATT-CAATAGGATACATGACATTGA
195 TCTCTATTCTTTTCATGATTGGGAACCAAAAACACATTCC-TTCCATTAGGATACATGACATTGA
* * * * * *
497429 TTCTTTGGTTTTGTAAGAAAAGCATTTCTTTCAACCATTTTTGATAGAATCAATGTTTGTCTCTT
259 TGCATTGGTGTCGCAAGAAAAGCATTTCTTTCAACCATTTTTGATAGAATCAAAGTTTGTCTCTT
* *
497494 AAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTCAAGGATTAGGCACCATAAAC
324 AAATAAGACAAACATGAATAGTCATACTAAT-CCCGTTCTTTCAAGGATTTGGCACCATAAAC
497557 ATGGATTCTA
Statistics
Matches: 1126, Mismatches: 191, Indels: 41
0.83 0.14 0.03
Matches are distributed among these distances:
474 9 0.01
475 745 0.66
476 359 0.32
477 13 0.01
ACGTcount: A:0.32, C:0.18, G:0.14, T:0.37
Consensus pattern (472 bp):
TGCCTCAATTGTGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTCTGATTAGGCACTAT
AAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGAAATCTTTTCTTT
ACCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCATAACAGT
CTCTATTCTTTTCATGATTGGGAACCAAAAACACATTCCTTCCATTAGGATACATGACATTGATG
CATTGGTGTCGCAAGAAAAGCATTTCTTTCAACCATTTTTGATAGAATCAAAGTTTGTCTCTTAA
ATAAGACAAACATGAATAGTCATACTAATCCCGTTCTTTCAAGGATTTGGCACCATAAACTTAGT
CTTCTCATAAGATACATGATATTGATGCTTTGATTCTTAAGAAAGGCTTTACTTCCACCAATTTT
TGTAAAGTCTAAGTTCA
Found at i:497898 original size:368 final size:368
Alignment explanation
Indices: 497251--497917 Score: 948
Period size: 368 Copynumber: 1.8 Consensus size: 368
497241 ATTCTCTTTA
* ** *
497251 TTAGGATACATGATATTGATGATTTTTTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTA
1 TTAGGATAAATGATATTGATGATTTTCCTTTGCAGGAAAATCTTTTCTTTGCCCTATTTTCCTTA
* *
497316 GAATCAAAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCATAACAGTCTCTATTCCTTTCAT
66 AAATCAAAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCATAACAGTCTCCATTCCTTTCAT
* * *** * **
497381 GATTGGGAACCAAAAGCACATTCCATTCAATAGGATACATGACATTGATTCTTTGGTTTTGTAAG
131 GATTGGGAACCAAAAGCAAATTCCATTCAATAGGATACATGACAATGACGATTTGATGCTGTAAG
* * * * *
497446 AAAAGCATTTCTTTCAACCATTTTTGATAGAATCAATGTTTGTCTCTTAAATAAGACAAACATGA
196 AAAAGCATTTCTTTCAACCATTTTTAACAAAATCAAAGTTTGTCTCTTAAATAAGACAAAAATGA
*
497511 ATAGTCATACTAATCCCCATTC-TTTCAAGGATTAGGCACCATAAACATGGATTCTAGTAATGAT
261 ATAATCATACTAATCCCCATTCTTTTC-AGGATTAGGCACCATAAACATGGATTCTAGTAATGAT
497575 CTTCATTAATGTTGTGATTAGGTACTATAAACACGTTATTATCG
325 CTTCATTAATGTTGTGATTAGGTACTATAAACACGTTATTATCG
* *
497619 TTAGGATAAATGATATTGATGATTTTCCTTTGCAGGTAAATCTTTTCTTTG-CCTAGTTTTCGTT
1 TTAGGATAAATGATATTGATGATTTTCCTTTGCAGGAAAATCTTTTCTTTGCCCTA-TTTTCCTT
* * **
497683 AAAATCAAAGTTCATCCCTTAACTAAGGCAAGCA-TGAATTCTTATAACAGTCTCCATTTTTTTC
65 AAAATCAAAGTTCATCCCTTAAATAAGGCAAGCATTG-ATTCTCATAACAGTCTCCATTCCTTTC
* * *
497747 GTGATTGGGAACCAAAATCAAATTCC-TTCCATTAGGATACATGACAATGACGATTTGATGCTGT
129 ATGATTGGGAACCAAAAGCAAATTCCATT-CAATAGGATACATGACAATGACGATTTGATGCTGT
* ***
497811 AAGAAAAGTATTTCTTTCAATTGTTTTTAACAAAATCAAAGTTTGT-TGCTTAAATAAGACAAAA
193 AAGAAAAGCATTTCTTTCAACCATTTTTAACAAAATCAAAGTTTGTCT-CTTAAATAAGACAAAA
*
497875 ATGAATAATCTTACTAATCCCCATTCTTTTCAGGATTAGGCAC
257 ATGAATAATCATACTAATCCCCATTCTTTTCAGGATTAGGCAC
497918 TGTAAACTTA
Statistics
Matches: 260, Mismatches: 34, Indels: 10
0.86 0.11 0.03
Matches are distributed among these distances:
367 9 0.03
368 247 0.95
369 4 0.02
ACGTcount: A:0.32, C:0.17, G:0.14, T:0.37
Consensus pattern (368 bp):
TTAGGATAAATGATATTGATGATTTTCCTTTGCAGGAAAATCTTTTCTTTGCCCTATTTTCCTTA
AAATCAAAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCATAACAGTCTCCATTCCTTTCAT
GATTGGGAACCAAAAGCAAATTCCATTCAATAGGATACATGACAATGACGATTTGATGCTGTAAG
AAAAGCATTTCTTTCAACCATTTTTAACAAAATCAAAGTTTGTCTCTTAAATAAGACAAAAATGA
ATAATCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATGGATTCTAGTAATGATC
TTCATTAATGTTGTGATTAGGTACTATAAACACGTTATTATCG
Found at i:498369 original size:844 final size:841
Alignment explanation
Indices: 496710--498402 Score: 2190
Period size: 844 Copynumber: 2.0 Consensus size: 841
496700 CGTTTGTGAC
* * * *
496710 AAACATGGATTCTAGTAATGATCTTCATTCATTTTCTAATTAGACACTATAAACATATTCTCCTT
1 AAACATGGATTCTAGTAATGATCTTCATTAATGTTCTAATTAGACACTATAAACATATTATCCGT
* *
496775 AGTAGGATAAATGATATTGATGATATTCTTTTGAATAGAATTCTTTTGTATGCCTTATTTTCCTT
66 A-TAGGATAAATGATATTGATGATATTCCTTTGAATAGAATTCTTTTCTATGCCTTATTTTCCTT
* * **
496840 AAAATTAAAGTTCATCCCTTAAATATGGCAAGCATTGATTCTCATAACAGTCTTTATTCTTTTCA
130 AAAATCAAAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCATAACAGTCTCCATTCTTTTCA
* * *
496905 TGATTGGGAACCAAAAACACATTCCTTCCATTAGGATACATGACATTGACACATTGGTGTCGCAA
195 TGATTGGGAACCAAAAACAAATTCCTTCCATTAGGATACATGACAATGACACATTGATGTCGCAA
* *
496970 GAAAAGCATTTCTTTCAACCATTTTTGATAAAATCAAAGTTTGTCTCTTAAATAAGACAAATAAG
260 GAAAAGCATTTCTTTCAACCATTTTTAACAAAATCAAAGTTTGTCTCTTAAATAAGACAAATAAG
* *** * * *
497035 AATAGTCATACTAATCTTGATTATTTTCAGGATTTGGCATTATAAACTTAGTCTTCTCATAAGGA
325 AATAATCATACTAATCCCCATTATTTTCAGGATTAGGCACTATAAACTTAGTCTTCTAATAAGGA
* * * * * *
497100 TGCACGATATTGATGATTTTGTTTCGTAAAAAGGGTTTAATTCCACCAATATTTGTAAAGAGTAT
390 TACACGATATTGAAGATTTGGTTTCGTAAAAAGGGTTT-ATCCCACCAATATTTGTAAAGACTAA
* * * * **
497165 GTTCACGCCTCAATTGTTACAAACATAGATTGTAATAACGATCTTTATTCATTTTCTGATTAGGC
454 GGTCACGCCTCAATTATGACAAACATAGATTGTAATAACGATCTTCATTCACCTTCTGATTAGGC
* * * * *
497230 ACTACAAACACATTCTCTTTATTAGGATACATGATATTGATGATTTTTTTTTGCATGAAAATCTT
519 ACTACAAACACATTCTCCTCATTAGGATAAATGATATTAATGATTTTCTTTTGCATGAAAATCTT
497295 TTCTTTGCCCTATTTTCCTTAGAATCAAAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCAT
584 TTCTTTGCCCTATTTTCCTTAGAATCAAAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCAT
* *
497360 AACAGTCTCTATTCCTTTCATGATTGGGAACCAAAAGCACATTCCATTCAATAGGATACATGACA
649 AACAGTCTCCATTCCTTTCATGATTGGGAACCAAAAACACATTCCATTCAATAGGATACATGACA
** * * *** * *
497425 TTGATTCTTTGGTTTTGTAAGAAAAGCATTTCTTTCAACCATTTTTGATAGAATCAATGTTTGTC
714 TTGACGCTTTGATGTCACAAGAAAAACATTTCTTTCAACCATTTTTGATAGAATCAAAGTTTGTC
* *
497490 TCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTC-TTTCAAGGATTAGGCACCAT
779 TCTTAAATAAGACAAACATGAATAGCCAAACTAATCCCCATTCTTTTC-AGGATTAGGCACCAT
* * **
497553 AAACATGGATTCTAGTAATGATCTTCATTAATGTTGTGATTAGGTACTATAAACACGTTATTAT-
1 AAACATGGATTCTAGTAATGATCTTCATTAATGTTCTAATTAGACACTATAAACA---TATTATC
* * *
497617 CGT-TAGGATAAATGATATTGATGATTTTCCTTTGCAGGTA-AA-TCTTTTCTTTGCC-TAGTTT
63 CGTATAGGATAAATGATATTGATGATATTCCTTTG-A-ATAGAATTCTTTTCTATGCCTTA-TTT
* * * *
497678 TCGTTAAAATCAAAGTTCATCCCTTAACTAAGGCAAGCA-TGAATTCTTATAACAGTCTCCATTT
125 TCCTTAAAATCAAAGTTCATCCCTTAAATAAGGCAAGCATTG-ATTCTCATAACAGTCTCCATTC
* * *
497742 TTTTCGTGATTGGGAACCAAAATCAAATTCCTTCCATTAGGATACATGACAATGACGA-TTTGAT
189 TTTTCATGATTGGGAACCAAAAACAAATTCCTTCCATTAGGATACATGACAATGAC-ACATTGAT
* * ***
497806 G-CTGTAAGAAAAGTATTTCTTTCAATTGTTTTTAACAAAATCAAAGTTTGT-TGCTTAAATAAG
253 GTC-GCAAGAAAAGCATTTCTTTCAACCATTTTTAACAAAATCAAAGTTTGTCT-CTTAAATAAG
* * *
497869 ACAAA-AATGAATAATCTTACTAATCCCCATTCTTTTCAGGATTAGGCACTGTAAACTTAGTCTT
316 ACAAATAA-GAATAATCATACTAATCCCCATTATTTTCAGGATTAGGCACTATAAACTTAGTCTT
* * *
497933 TTAATAAGGATACATGATATTGAAGCA-TTGGTTTCGTAAGAAAGGCGTTCT-TCCCACCAATTT
380 CTAATAAGGATACACGATATTGAAG-ATTTGGTTTCGTAA-AAAGG-GTT-TATCCCACCAATAT
* * ** * * * *
497996 TTGTAAAGCCTAAGGTCATGCCTCAATTATGACAAATGTGGATTCG-AGTAATGATCTTCATTTA
441 TTGTAAAGACTAAGGTCACGCCTCAATTATGACAAACATAGATT-GTAATAACGATCTTCATTCA
* * * * *
498060 CCTTGTGATTAGGCACTATAAACATATTCTCCTCATTAGGATAAATGGTGTTAATGATTTTCTTT
505 CCTTCTGATTAGGCACTACAAACACATTCTCCTCATTAGGATAAATGATATTAATGATTTTCTTT
* * *
498125 TGCATGGAAATCTTTTCTTTGCCTTATTTTCCTTAGAATTAAAGTTCATCCCTTAAATAAGGCAA
570 TGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAGAATCAAAGTTCATCCCTTAAATAAGGCAA
* * *
498190 GCATTGATTCTCATAACAGTCTCCATTCTTTTCATGATTGGGAACCAAAAACACATTCCTTTCAT
635 GCATTGATTCTCATAACAGTCTCCATTCCTTTCATGATTGGGAACCAAAAACACATTCCATTCAA
* * *
498255 TTGGATACATGACATTGACGCTTTGATGTCACAAGAAAAATATTTCTTTCATCCATTTTTGATAG
700 TAGGATACATGACATTGACGCTTTGATGTCACAAGAAAAACATTTCTTTCAACCATTTTTGATAG
* * * *
498320 AATCAAAGTTTTTCTCTTACATAAGATAAACATGAATAGCCAAACTAATCTCCATTCTTTTCAGG
765 AATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGCCAAACTAATCCCCATTCTTTTCAGG
498385 ATTAGGCACCAT
830 ATTAGGCACCAT
498397 AAACAT
1 AAACAT
498403 AGCCTTCTAA
Statistics
Matches: 730, Mismatches: 103, Indels: 33
0.84 0.12 0.04
Matches are distributed among these distances:
842 8 0.01
843 336 0.46
844 368 0.50
845 12 0.02
846 6 0.01
ACGTcount: A:0.32, C:0.17, G:0.14, T:0.37
Consensus pattern (841 bp):
AAACATGGATTCTAGTAATGATCTTCATTAATGTTCTAATTAGACACTATAAACATATTATCCGT
ATAGGATAAATGATATTGATGATATTCCTTTGAATAGAATTCTTTTCTATGCCTTATTTTCCTTA
AAATCAAAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCATAACAGTCTCCATTCTTTTCAT
GATTGGGAACCAAAAACAAATTCCTTCCATTAGGATACATGACAATGACACATTGATGTCGCAAG
AAAAGCATTTCTTTCAACCATTTTTAACAAAATCAAAGTTTGTCTCTTAAATAAGACAAATAAGA
ATAATCATACTAATCCCCATTATTTTCAGGATTAGGCACTATAAACTTAGTCTTCTAATAAGGAT
ACACGATATTGAAGATTTGGTTTCGTAAAAAGGGTTTATCCCACCAATATTTGTAAAGACTAAGG
TCACGCCTCAATTATGACAAACATAGATTGTAATAACGATCTTCATTCACCTTCTGATTAGGCAC
TACAAACACATTCTCCTCATTAGGATAAATGATATTAATGATTTTCTTTTGCATGAAAATCTTTT
CTTTGCCCTATTTTCCTTAGAATCAAAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCATAA
CAGTCTCCATTCCTTTCATGATTGGGAACCAAAAACACATTCCATTCAATAGGATACATGACATT
GACGCTTTGATGTCACAAGAAAAACATTTCTTTCAACCATTTTTGATAGAATCAAAGTTTGTCTC
TTAAATAAGACAAACATGAATAGCCAAACTAATCCCCATTCTTTTCAGGATTAGGCACCAT
Found at i:498450 original size:476 final size:476
Alignment explanation
Indices: 497553--498892 Score: 1742
Period size: 476 Copynumber: 2.8 Consensus size: 476
497543 TAGGCACCAT
* * * * *
497553 AAACATGGATTCTAGTAATGATCTTCATTAATGTTGTGATTAGGTACTATAAACACGTTATTATC
1 AAACATGGATTCTAGTAATGATCTTCATTAATCTTGTGATTAGGCACTATAAACACATTCTCATC
* *
497618 GTTAGGATAAATGATATTGATGATTTTCCTTTGCA-GGTAAATCTTTTCTTTGCCTAGTTTTCGT
66 ATTAGGATAAATGATATTGATGATTTTCCTTTGCATGG-AAATCTTTTCTTTGCCTACTTTTCGT
* *
497682 TAAAATCAAAGTTCATCCCTTAACTAAGGCAAGCATGAATTCTTATAACAGTCTCCATTTTTTTC
130 TAAAATCAAAGTTCATCCCTTAACTAAGGCAAGCATGAATTCTCATAACAGTCTCCATTCTTTTC
* * * * * *
497747 GTGATTGGGAACCAAAATCAAATTCCTTCCATTAGGATACATGACAATGACGATTTGATG-CTGT
195 ATGATTGGGAACCAAAAACACATTCCTTCCATTAGGATACATGACATTGACGCTTTGATGTC-GC
** * * *
497811 AAGAAAAGTATTTCTTTCAAT-TGTTTTTAACAAAATCAAAGTTTGTT-GCTTAAATAAGACAAA
259 AAGAAAAGTATTTCTTTC-ATCCATTTTTGATAAAATCAAAGTTT-TTCTCTTAAATAAGACAAA
* * * * *
497874 AATGAATAATCTTACTAATCCCCATTCTTTTCAGGATTAGGCACTGTAAACTTAGTCTTTTAATA
322 AATGAATAGTCATACTAATCTCCATTCTTTTCAGGATTAGGCACTATAAACTTAGTCTTCTAATA
* * *
497939 AGGATACATGATATTGAAGCATTGGTTTCGTAAGAAAGGCGTTCTTCCCACCAATTTTTGTAAAG
387 AGGATACAGGATATTGAAGCATTGGCTTCGTAAGAAAGGCGTTCTTCCCACCAACTTTTGTAAAG
498004 CCTAAGGTCATGCCTCAATTATGAC
452 CCTAAGGTCATGCCTCAATTATGAC
** * * * * *
498029 AAATGTGGATTCGAGTAATGATCTTCATTTACCTTGTGATTAGGCACTATAAACATATTCTCCTC
1 AAACATGGATTCTAGTAATGATCTTCATTAATCTTGTGATTAGGCACTATAAACACATTCTCATC
* * * * *
498094 ATTAGGATAAATGGTGTTAATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCTTA-TTTTCCT
66 ATTAGGATAAATGATATTGATGATTTTCCTTTGCATGGAAATCTTTTCTTTGCC-TACTTTTCGT
* * *
498158 TAGAATTAAAGTTCATCCCTTAAATAAGGCAAGCATTG-ATTCTCATAACAGTCTCCATTCTTTT
130 TAAAATCAAAGTTCATCCCTTAACTAAGGCAAGCA-TGAATTCTCATAACAGTCTCCATTCTTTT
* * *
498222 CATGATTGGGAACCAAAAACACATTCCTTTCATTTGGATACATGACATTGACGCTTTGATGTCAC
194 CATGATTGGGAACCAAAAACACATTCCTTCCATTAGGATACATGACATTGACGCTTTGATGTCGC
* * * * *
498287 AAGAAAAATATTTCTTTCATCCATTTTTGATAGAATCAAAGTTTTTCTCTTACATAAGATAAACA
259 AAGAAAAGTATTTCTTTCATCCATTTTTGATAAAATCAAAGTTTTTCTCTTAAATAAGACAAAAA
* * * * * *
498352 TGAATAGCCAAACTAATCTCCATTCTTTTCAGGATTAGGCACCATAAACATAGCCTTCTAATATG
324 TGAATAGTCATACTAATCTCCATTCTTTTCAGGATTAGGCACTATAAACTTAGTCTTCTAATAAG
* *
498417 GATATAGGATATTGAAGCATTGGCTTCGTAAGAAAGGCTTTCTTCCCACCAACTTTTGTAAAGCC
389 GATACAGGATATTGAAGCATTGGCTTCGTAAGAAAGGCGTTCTTCCCACCAACTTTTGTAAAGCC
* * *
498482 TAAGTTCATGCCTCCATTGTGAC
454 TAAGGTCATGCCTCAATTATGAC
* * * * *
498505 AAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATGAACACAATCTCTTC
1 AAACATGGATTCTAGTAATGATCTTCATTAATCTTGTGATTAGGCACTATAAACACATTCTCATC
* * *
498570 ATTAGGATAAAAGATATTGGTGATTTTCCTTTGCATGTAAATCTTTTCTTTGCCTACTTTTCGTT
66 ATTAGGATAAATGATATTGATGATTTTCCTTTGCATGGAAATCTTTTCTTTGCCTACTTTTCGTT
* * *
498635 AAAATCAAAGTTCATCCCTTAACTATGGCAAGCATGAATTCTCATAATAGTCTCTATTCTTTTCA
131 AAAATCAAAGTTCATCCCTTAACTAAGGCAAGCATGAATTCTCATAACAGTCTCCATTCTTTTCA
* * * *
498700 TGATTGGGAACCAAAGACACGTTCCTTCCATTAGGATACATGACATTGACACATTCG-TGTCGCA
196 TGATTGGGAACCAAAAACACATTCCTTCCATTAGGATACATGACATTGACGC-TTTGATGTCGCA
* * * * * * * *
498764 AGAAAAGCAATTATTTCAACCATTTTTGCTAAAATTAAAGTTTATCTCTTAAATAAGACAAGTAA
260 AGAAAAGTATTTCTTTCATCCATTTTTGATAAAATCAAAGTTTTTCTCTTAAATAAGACAA-AAA
* * * * *
498829 -GAATAGTCATACTAATCTCGATTATTTTAAGGATTTGGCACTATAAACTTAGTCTTCTCATAAG
324 TGAATAGTCATACTAATCTCCATTCTTTTCAGGATTAGGCACTATAAACTTAGTCTTCTAATAAG
498893 CATGAATTCT
Statistics
Matches: 738, Mismatches: 116, Indels: 20
0.84 0.13 0.02
Matches are distributed among these distances:
475 8 0.01
476 719 0.97
477 11 0.01
ACGTcount: A:0.32, C:0.17, G:0.14, T:0.36
Consensus pattern (476 bp):
AAACATGGATTCTAGTAATGATCTTCATTAATCTTGTGATTAGGCACTATAAACACATTCTCATC
ATTAGGATAAATGATATTGATGATTTTCCTTTGCATGGAAATCTTTTCTTTGCCTACTTTTCGTT
AAAATCAAAGTTCATCCCTTAACTAAGGCAAGCATGAATTCTCATAACAGTCTCCATTCTTTTCA
TGATTGGGAACCAAAAACACATTCCTTCCATTAGGATACATGACATTGACGCTTTGATGTCGCAA
GAAAAGTATTTCTTTCATCCATTTTTGATAAAATCAAAGTTTTTCTCTTAAATAAGACAAAAATG
AATAGTCATACTAATCTCCATTCTTTTCAGGATTAGGCACTATAAACTTAGTCTTCTAATAAGGA
TACAGGATATTGAAGCATTGGCTTCGTAAGAAAGGCGTTCTTCCCACCAACTTTTGTAAAGCCTA
AGGTCATGCCTCAATTATGAC
Found at i:499061 original size:226 final size:226
Alignment explanation
Indices: 498664--499118 Score: 529
Period size: 226 Copynumber: 2.0 Consensus size: 226
498654 TAACTATGGC
* * ** * **
498664 AAGCATGAATTCTCATAATAGTCTCTATTCTTTTCATGATTGGGAACCAAAGACACGTTCCTTCC
1 AAGCATGAATTCTCATAACAGTCTCCACCCTTTTCATGATTGCGAACCAAAGACAAATTCCTTCC
* * *
498729 ATTAGGATACATGACATTGACACATTCGTGTCGCAAGAAAAGCAATTATTTCAACCATTTTTGCT
66 ATTAGGATACATGACATTAACACATTCGTGTCGCAAGAAAAACAATTATTTCAACCATTTTTGAT
* ** * *
498794 AAAATTAAAGTTTATCTCTTAAATAAGACAAGTAAGAATAGTCATACTAATCTCGATTATTTTAA
131 AAAATCAAAGTTTATCTCTTAAATAAGACAAACAAGAATAGTCATACTAATCCCCATTATTTTAA
* * * *
498859 GGATTTGGCACTATAAACTTAGTCTTCTCAT
196 GGATTAGGCACCATAAACTTAGCCTTCTAAT
** *
498890 AAGCATGAATTCTTGTAACAGTCTCCACCCTTTTCATGATTGCGAACCAAA-ATCAAATTCCTTT
1 AAGCATGAATTCTCATAACAGTCTCCACCCTTTTCATGATTGCGAACCAAAGA-CAAATTCCTTC
* * * * * * *
498954 CATTTGGATACATGACATTAACGC-TTTGATGTCAG-AAGAAAAATATTTCTTTCATCCATTTTT
65 CATTAGGATACATGACATTAACACATTCG-TGTC-GCAAGAAAAACAATTATTTCAACCATTTTT
* * * * * *
499017 GATAGAATCAAAGTTTTTCTCTTACATAAGATAAACATGAATAGTCATACTAATCCCCATTCTTT
128 GATAAAATCAAAGTTTATCTCTTAAATAAGACAAACAAGAATAGTCATACTAATCCCCATTATTT
**
499082 TCGGGATTAGGCACCATAAACTTAGCCTTCTAAT
193 TAAGGATTAGGCACCATAAACTTAGCCTTCTAAT
499116 AAG
1 AAG
499119 GATACACGAT
Statistics
Matches: 189, Mismatches: 37, Indels: 6
0.81 0.16 0.03
Matches are distributed among these distances:
225 4 0.02
226 184 0.97
227 1 0.01
ACGTcount: A:0.34, C:0.19, G:0.13, T:0.35
Consensus pattern (226 bp):
AAGCATGAATTCTCATAACAGTCTCCACCCTTTTCATGATTGCGAACCAAAGACAAATTCCTTCC
ATTAGGATACATGACATTAACACATTCGTGTCGCAAGAAAAACAATTATTTCAACCATTTTTGAT
AAAATCAAAGTTTATCTCTTAAATAAGACAAACAAGAATAGTCATACTAATCCCCATTATTTTAA
GGATTAGGCACCATAAACTTAGCCTTCTAAT
Found at i:500065 original size:476 final size:474
Alignment explanation
Indices: 498905--506858 Score: 8663
Period size: 476 Copynumber: 16.8 Consensus size: 474
498895 TGAATTCTTG
** * * * *
498905 TAACAGTCTCCACCCTTTTCATGATTGCGAACCAAAATCAAATTCCTTTCATTTGGATACATGAC
1 TAACAGTCTCCATTCTTTTCATGATTGGGAACCAAAAACACATTCCTTTCATTAGGATACATGAC
* * * * *
498970 ATTAACGCTTTGATGTCAG-AAGAAAAATATTTCTTTCATCCATTTTTGATAGAATCAAAGTTTT
66 ATTGACGCTTTGGTGTC-GCAAGAAAAGTATTTCTTTCAACCATTTTTGATAGAATCAAAGTTTG
* * *
499034 TCTCTTACATAAGATAAACATGAATAGTCATACTAATCCCCATTCTTTTCGGGATTAGGCACCAT
130 TCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTC-TTTCAGGATTAGGCACCAT
* * * * * *
499099 AAACTTAGCCTTCTAATAAGGATACACGATATTGAAGCATTGGCTTCATAAGAAAGGCTTTCTTC
194 AAACTTAGTCTTCTCATAAAGATACACGATATTGATGCATTGGTTTCGTAAGAAAGGCTTTCTTC
* * *
499164 CCACCAACTTTTGTAAAGCCTAAGTTCATGCCTCAATTGTGACAAACATGGATTCTAGTAATGAT
259 CCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAATTGTGACAAACATGGATTCTAGTAATGAT
* * * *
499229 CTTCATTCATTTTGTGATTAGGCACTATGAACACATTCTCCTCATTAGGATAAAGGATATTTAGG
324 CTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCT-ATTAGGATAAATGATATTGATG
* * * ** * * *
499294 ATTTTCCTTTGCATGTAAATCTTTTTTTTTTTTCCTAGTTTTCGTTAAAATCAAAGTTCAGCGCT
388 ATTTTCTTTTGCATGGAAATC--TTTTCTTTGCCCTA-TTTTCCTTAAAATCAAAGTTCATCCCT
*
499359 TAACTAAGGCAAGCA-TGAATTCT-A
450 TAAATAAGGCAAGCATTG-ATTCTCA
* * *
499383 GTAATAGTCTCCATTCTTTTCA-GAATTGGGAACCAAAAACACGTTCCTTCCATTAGGATACATG
1 -TAACAGTCTCCATTCTTTTCATG-ATTGGGAACCAAAAACACATTCCTTTCATTAGGATACATG
* * * ** * * * ** * *
499447 GCATTGACACATTCATGTCGCAAGAAAAGCAATTATTTTGACCATTTTTGATAAAATTAAAGTTT
64 ACATTGACGCTTTGGTGTCGCAAGAAAAGTATTTCTTTCAACCATTTTTGATAGAATCAAAGTTT
** * * * * * * * *
499512 GTCTCTTAAATAAGACAAGTAAGAATAGCCATACAAATCTCGATTATTTTCAGGATTTGGCACTA
129 GTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATT-CTTTCAGGATTAGGCACCA
* *
499577 TAAACTTAGTCTTCTCATAAAGATACACGATATTGATGCTTTTGTTTCGTAAGAAAAGG-TTTCT
193 TAAACTTAGTCTTCTCATAAAGATACACGATATTGATGCATTGGTTTCGTAAG-AAAGGCTTTCT
* * * * * * * *
499641 TTCCACCAATTTTTGAAAAGTCTATGTTCGTCCCTTAATTATGACAAACATGGATTGC-AATAAA
257 TCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAATTGTGACAAACATGGATT-CTAGTAAT
* * * *
499705 GATCTTCATTCATTTTCTGATGAGGCACTACAAGCACATTCTCCGTATTAGGATAAACT-ATATT
321 GATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCC-TATTAGGATAAA-TGATATT
* *
499769 GATGATTTTTTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAGAATCAAAGTTCATCCC
384 GATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCC
*
499834 TTAAATAAGGTAAGCATTGATTCTCA
449 TTAAATAAGGCAAGCATTGATTCTCA
* * *
499860 TAACAGTCTCCATTCTTTTCATGATTGGGAACCAAAAACACGTTCCATTCAATAGGATACATGAC
1 TAACAGTCTCCATTCTTTTCATGATTGGGAACCAAAAACACATTCCTTTCATTAGGATACATGAC
* * * * * *
499925 ATTGATGCTTTGGTGTTGCAAGAAAAGCATTTCTTTGAACCGTTTTTGATAGAATCAATGTTTGT
66 ATTGACGCTTTGGTGTCGCAAGAAAAGTATTTCTTTCAACCATTTTTGATAGAATCAAAGTTTGT
*
499990 CTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTCCAAGGATTAGGCACCATA
131 CTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTC-AGGATTAGGCACCATA
* * * * * *
500055 AACATAGTCTTCTCAT-AAGACTACAGGATGTTGATGC-TCTGATTT-TTCAA-ATAAGGCTATC
195 AACTTAGTCTTCTCATAAAGA-TACACGATATTGATGCAT-TGGTTTCGT-AAGA-AAGGCT-TT
* *
500116 CTT-CCACCAATTTTTGTAAAGTCTAACTTCGTGCCT-AATTTGTGACAAACATGGATTCTAGAA
255 CTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAA-TTGTGACAAACATGGATTCTAGTA
* *
500179 ATGATCTTCATTCATTTTGTGATTATGCACTATAAACACATTCTCCTCATTAGGATAAAGGATAT
319 ATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCT-ATTAGGATAAATGATAT
* * * * *
500244 TGGTGATTTTCCTTTGCATGTAAATCTTTTCTTTG-CCTAGCTTTCGTTAAAATCAAAGTTCATC
383 TGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTA-TTTTCCTTAAAATCAAAGTTCATC
* *
500308 CCTTAACTAAGGCAAGCA-TGAATTCTCG
447 CCTTAAATAAGGCAAGCATTG-ATTCTCA
*
500336 TAACAGTCTCCATTCTTTTCATGATTGGGAACCAAAATA-AAATTCCTTTCATTAGGATACATGA
1 TAACAGTCTCCATTCTTTTCATGATTGGGAACCAAAA-ACACATTCCTTTCATTAGGATACATGA
* * * * * * * *
500400 TGA-TGACGATTTGATGTTGCAAGAAAAGTATTTCTTTCAATCGTTTTTAACAGAATCAAAGTTT
65 -CATTGACGCTTTGGTGTCGCAAGAAAAGTATTTCTTTCAACCATTTTTGATAGAATCAAAGTTT
* * * * *
500464 GTCGCTTAAATAAGACAAAAATGAATAATCTTACTAATCCCTATTCTTTTCAGGATTAGGCACCA
129 GTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTC-TTTCAGGATTAGGCACCA
* * * * *
500529 CAAACTTAGTCTTCTAATAAGGATACATGATATTGAAGCATTGGTTTCGTAAGAAAGGCGTTT-T
193 TAAACTTAGTCTTCTCATAAAGATACACGATATTGATGCATTGGTTTCGTAAGAAAGGC-TTTCT
* * ** *
500593 TCCCACCAATTTTTGTAAAGTCTAAGGTCAG-GCCTCAATTATGACAAATGTGGATTCGAGTAAT
257 TCCCACCAATTTTTGTAAAGTCTAAGTTC-GTGCCTCAATTGTGACAAACATGGATTCTAGTAAT
** * * * * *
500657 GATCTTCATTCACCTTGTGATTAGG--C---AAACATATTCTGCTCATTAAGATAAATGGTGTT-
321 GATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCT-ATTAGGATAAATGATATTG
* *
500716 ATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAGAATTAAAGTTCATCCCT
385 ATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCT
* *
500781 TCAATAAGGCAAGCATTGATTCTCG
450 TAAATAAGGCAAGCATTGATTCTCA
500806 TAACAGTCTCCATTCTTTTCATGATTGGGAACCAAAAACACATTCCTTTCATTAGGATACATGAC
1 TAACAGTCTCCATTCTTTTCATGATTGGGAACCAAAAACACATTCCTTTCATTAGGATACATGAC
* * * *
500871 CTTGACGCTTTGATGTCGCAAGAAAAATATTTCTTTCATCCATTTTTGAT-GCAATCAAAGTTTG
66 ATTGACGCTTTGGTGTCGCAAGAAAAGTATTTCTTTCAACCATTTTTGATAG-AATCAAAGTTTG
* * * * * *
500935 TCTCTTACATAAGATAAACATGAATAATCATACTAATCCCTACTCTTTTTAGGATTAGGCACCAT
130 TCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTC-TTTCAGGATTAGGCACCAT
* * * * * * *
501000 AAACTTAGCCTTCTTAT-AAGTATACACGATATTAAAGCGTTGGTTTTGTAGGAAAGGCTTTCTT
194 AAACTTAGTCTTCTCATAAAG-ATACACGATATTGATGCATTGGTTTCGTAAGAAAGGCTTTCTT
* * *
501064 CCCACCAACTTTTGTAAAGCCTAAGTTCGTGCCTCAATTGTGAAAAACATGGATTCTAGTAATGA
258 CCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAATTGTGACAAACATGGATTCTAGTAATGA
* * * *
501129 TCTTCATTCATTTTGAGATTATGCACTAGAAACACATTCTCCTCATTAGGATAAAGGATATTGAT
323 TCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCT-ATTAGGATAAATGATATTGAT
* * * * *
501194 GATTTTCCTTTGCATGTAAATCTTTTCTTTG-CCTAGCTTTCGTTAAAATCAATGTTCATCCCTT
387 GATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTA-TTTTCCTTAAAATCAAAGTTCATCCCTT
*
501258 AACTAAGGCAAGCA-TGAATTCTCA
451 AAATAAGGCAAGCATTG-ATTCTCA
* * * * * ** *
501282 TAATAGTCTCCATTCTTTTCATGATTAGGAACCAGAATCATATTTTTTTCGTTAGGATACATGAC
1 TAACAGTCTCCATTCTTTTCATGATTGGGAACCAAAAACACATTCCTTTCATTAGGATACATGAC
* * * * *** * * * *
501347 GA-TGACGATTTGATGCCGCAAGAAAAATATTTCTTTCAATTGTTTTTAACAGAATCAAATTTTA
66 -ATTGACGCTTTGGTGTCGCAAGAAAAGTATTTCTTTCAACCATTTTTGATAGAATCAAAGTTTG
* * * * * * *** * *
501411 TTTCTTAAATAAGACAAAAATGAAGAATCTTTCTAATCTATATTCTTTTCAGGATTTGGCACCAC
130 TCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTC-TTTCAGGATTAGGCACCAT
* * * * * *
501476 AAACTTAGTCTTTTAATAAGGATACATGATATTGAAGCATTGGTTTCGTAAGAAAGGCATTCTTC
194 AAACTTAGTCTTCTCATAAAGATACACGATATTGATGCATTGGTTTCGTAAGAAAGGCTTTCTTC
* ** * * * * *
501541 CCACTAATTTTTCAAAAGCCTAAATTCGTGCCTCAATTGCGACAAACATGGGTTCTAGTAATAAT
259 CCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAATTGTGACAAACATGGATTCTAGTAATGAT
501606 CTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTTATTAGGATAAATGATATTGATG
324 CTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCC-TATTAGGATAAATGATATTGATG
* * *
501671 ATTTTCTTTTGAATGGAAATCTTTTCTTTGCCTTATTTTCCTTAAAATTAAAGTTCATCCCTTAA
388 ATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAA
501736 ATAAGGCAAGCATTGATTCTCA
453 ATAAGGCAAGCATTGATTCTCA
* * *
501758 TAACAGTCTCTATTCTTGTCATGATTTGGAACCAAAAACACATTCCTTTCATTAGGATACATGAC
1 TAACAGTCTCCATTCTTTTCATGATTGGGAACCAAAAACACATTCCTTTCATTAGGATACATGAC
* * ** * * *
501823 ATTGACACATTACTGTCGCAAGAAAAGCATTTCTTTCAACCATTTTTGGTAAAATCAAAGTTTGT
66 ATTGACGCTTTGGTGTCGCAAGAAAAGTATTTCTTTCAACCATTTTTGATAGAATCAAAGTTTGT
* * * * * * *
501888 CTCTGAAATAAGACAAACAAGAATAGTCATATTAATCCCGATTATTTTTCAGGATTTGGCACTAT
131 CTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCA-T-TCTTTCAGGATTAGGCACCAT
* * * * * * *
501953 AAACTTGGTCTTCTCATAAGGATACACGATA-TGATGCTTTTGTTTCATAAGAAAGGGTTTCTTT
194 AAACTTAGTCTTCTCATAAAGATACACGATATTGATGCATTGGTTTCGTAAGAAAGGCTTTCTTC
* * * * * * *
502017 CCACCAATTTTTGTAAAGTCTATGTTTGCGCCTTAATTGTGACAAACATGGATTGTAATAACGAT
259 CCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAATTGTGACAAACATGGATTCTAGTAATGAT
* * **
502082 CTTCATTCATTTTCTGA-TATGGCACTACAAACACATTCTCCTTATTAGGATAAATGATATTTTT
324 CTTCATTCATTTTGTGATTA-GGCACTATAAACACATTCTCC-TATTAGGATAAATGATATTGAT
* * * * * *
502146 GATTTTTTTTTGCATGGAAATCTTTTGTTTGCCCTATTTTCCTTAGAATGAATGTCCATCCCTTA
387 GATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTA
*
502211 AATAAGGCAAGCATTGACTCTCA
452 AATAAGGCAAGCATTGATTCTCA
* ** * * *
502234 TAACAGTCTCCATTCCTTTCACAATTGGGAACCAAAAACACATTCCATTCAATAGGATACAAGAC
1 TAACAGTCTCCATTCTTTTCATGATTGGGAACCAAAAACACATTCCTTTCATTAGGATACATGAC
* * * * * ** * *
502299 ATTGATGCTTTGGTGTTGCAAGCAAAGCATTTTTTTTCAACTGTTTTTGATAGAATCAATGCTTG
66 ATTGACGCTTTGGTGTCGCAAGAAAAGTA-TTTCTTTCAACCATTTTTGATAGAATCAAAGTTTG
* *
502364 TCTCTTAAATAAGAAAAACATGAATAGTCA-ACTAATCCCCATTCTTTCAAGGTTTAGGCACCAT
130 TCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTC-AGGATTAGGCACCAT
* * * * * * * * * ** * *
502428 AAACATAGTCTTCACAT-AAGACTAGATGATGTTGATTCTTTGATTTCGCAATTAAGGCTATCCT
194 AAACTTAGTCTTCTCATAAAGA-TACACGATATTGATGCATTGGTTTCGTAAGAAAGGCTTTCTT
* * * * * *
502492 CCCACCAATCTTTGCAAAGTCAAACTTCATGCCT-AATTTGTGGCAAACATGGATTCTAGTAATG
258 CCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAA-TTGTGACAAACATGGATTCTAGTAATG
* *
502556 ATCTTCATTCATTTTGTGATTAGGCACTGTAAACACATTTTTTCC--TTAGGATAAATGATATTG
322 ATCTTCATTCATTTTGTGATTAGGCACTATAAACACA--TTCTCCTATTAGGATAAATGATATTG
* *
502619 ATGATTTTCCTTTGCA-GGTAAATCTTTTCTTTG-CCTAGTTTTCGTTAAAATCAAAGTTCATCC
385 ATGATTTTCTTTTGCATGG-AAATCTTTTCTTTGCCCTA-TTTTCCTTAAAATCAAAGTTCATCC
*
502682 CTTAACTAAGGCAAGCA-TGAATTCTCA
448 CTTAAATAAGGCAAGCATTG-ATTCTCA
* * * *
502709 TAATAGTCTCCATTCTTTTCATGATTGGGAACCAAAATCAAATTCCTTCCATTAGGATACATGAC
1 TAACAGTCTCCATTCTTTTCATGATTGGGAACCAAAAACACATTCCTTTCATTAGGATACATGAC
* * * * ** * *
502774 AATGATGATTTGATG-CTGCAAGAAAAGTATTTCTTTCAGTCATTTTTAACAGAATCAAAGTTTG
66 ATTGACGCTTTGGTGTC-GCAAGAAAAGTATTTCTTTCAACCATTTTTGATAGAATCAAAGTTTG
* * *
502838 T-TGCTTAAATAAGACAAAAATGAATAATCTTACTAATCCCCATTCTTTTCAGGATTAGGCACCA
130 TCT-CTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTC-TTTCAGGATTAGGCACCA
* * * * * * ** *
502902 CAAATTTAGTCTTCTAATTAGGATACACGATATTGAGGCATTGGTTTCACAAGAAAGGCATTCTT
193 TAAACTTAGTCTTCTCATAAAGATACACGATATTGATGCATTGGTTTCGTAAGAAAGGCTTTCTT
* * **
502967 CCCACCAATTTTTGTAAAGCCTAAGGTT-GTGCCTCAATTATGACAAATGTGGATTCCT-GTAAT
258 CCCACCAATTTTTGTAAAGTCTAA-GTTCGTGCCTCAATTGTGACAAACATGGATT-CTAGTAAT
* ** * *
503030 GGTCTTCATTCACCTTGTGATTAGGCACTATAAACATATTCTCCTTATTAGGATAAATGGTATTG
321 GATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCC-TATTAGGATAAATGATATTG
* * * * *
503095 ATGATTTTTTTTTGCATAGAAATATTTTCTTTGCCATATTTTCCTTAAAATTAAAGTTCATCCCT
385 ATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCT
* *
503160 TAAATAAAGCAAGCATTGATTATCA
450 TAAATAAGGCAAGCATTGATTCTCA
* * *
503185 TAACAGTCTCCATTCTTTTCATGATTGAGAACTAAAAACACATTCCTTTCATTAGGATACATGGC
1 TAACAGTCTCCATTCTTTTCATGATTGGGAACCAAAAACACATTCCTTTCATTAGGATACATGAC
* * * *
503250 ATTAACGCTTTGGTGTCGAAAGAAAAATATTTCTTTCAACCATTTTTGATAGAATCAAAGTCTGT
66 ATTGACGCTTTGGTGTCGCAAGAAAAGTATTTCTTTCAACCATTTTTGATAGAATCAAAGTTTGT
* * * * * * * *
503315 CTCTCACATAAGACAAACATGAATAATCATAATAATCCCTATTCTTTTTAGGATTTGGCACCAAA
131 CTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTC-TTTCAGGATTAGGCACCATA
* * * *
503380 AACTTAGTCTTCTAATAAGGATACACGATATTGAAGCATTGGTTTCGTAAGAATGGCTTTCTTCC
195 AACTTAGTCTTCTCATAAAGATACACGATATTGATGCATTGGTTTCGTAAGAAAGGCTTTCTTCC
*
503445 CACCAATTTTTGTAAAGCCTAAGTTCGTGCCTCAATTGTGACAAACATGGATTCTAGTAATGATC
260 CACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAATTGTGACAAACATGGATTCTAGTAATGATC
* * * * *
503510 TTCATCCATTTTGTGAATAGGCACTGTAAACACATTCTTCTCATTAGGTTAAATGATATTGATGA
325 TTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCT-ATTAGGATAAATGATATTGATGA
* * * *
503575 TTTTCCTTTGCATGTAAATCCTTTCTTTG-CCTAGTTTTCATTTAAAATCAAAGTTCATCCCTTA
389 TTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTA-TTTTC-CTTAAAATCAAAGTTCATCCCTTA
* * *
503639 ACTAAGGCAAGCA-AGAATTCTCG
452 AATAAGGCAAGCATTG-ATTCTCA
* * * ** * * ** * * * *
503662 TAACAGCCTCCATTATTTTCAAGGCTGGGAACTAGAATTATATTCCTTTCATTGGGATATACGAC
1 TAACAGTCTCCATTCTTTTCATGATTGGGAACCAAAAACACATTCCTTTCATTAGGATACATGAC
* ** * * * * **
503727 AATGACAATTTGATGTCGCAAGAAAAGTATTTCTTTCAATCGTTTTTAACGGAATCAAAGTTTGT
66 ATTGACGCTTTGGTGTCGCAAGAAAAGTATTTCTTTCAACCATTTTTGATAGAATCAAAGTTTGT
* * * * * *
503792 CTCTTAAATAAGACAAAAATGAATAATCTTACTAATCCCCATTCTTTTTAGGACTAGGCACCACA
131 CTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTC-TTTCAGGATTAGGCACCATA
* * * * * *
503857 AACTTAGTCTTCTAATTAGGATACACGACATTGAAGCATTGGTTTCGTAAGAAAGGCGTTCTTCC
195 AACTTAGTCTTCTCATAAAGATACACGATATTGATGCATTGGTTTCGTAAGAAAGGCTTTCTTCC
* * * * * * *
503922 CACCAATTTTTATAAAGCCTATGTTCATGACTCAATTATGACAAATATGGATTCTAGTAATGATC
260 CACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAATTGTGACAAACATGGATTCTAGTAATGATC
*** * * * * * *
503987 TTCATTCACCATGTGATTAGGCACTATAAACATATTCCCCTTATTAAGATAAATGGTATTTAAGA
325 TTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCC-TATTAGGATAAATGATATTGATGA
* *
504052 TTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATTAAAGTTCATCCTTTAAA
389 TTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAA
*
504117 TAAGGTAAGCATTGATTCTCA
454 TAAGGCAAGCATTGATTCTCA
*
504138 TAACAGTCTCCATTCTTTTCGTGATTGGGAACCAAAAACACATTCCTTTCATTAGGATACATGAC
1 TAACAGTCTCCATTCTTTTCATGATTGGGAACCAAAAACACATTCCTTTCATTAGGATACATGAC
* * *
504203 ATTGACGCTTTGGTGTCGCAAGAAAAATATTTCTTTCAACCATTTTTGATAGAACCAAAATTTGT
66 ATTGACGCTTTGGTGTCGCAAGAAAAGTATTTCTTTCAACCATTTTTGATAGAATCAAAGTTTGT
* * * * *
504268 CTCTTACATAAGATAAACATGAATAATCATACTAATCCCCATATTTTTCAGGATTAAGCACCATA
131 CTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCAT-TCTTTCAGGATTAGGCACCATA
* * * * * *
504333 AACTTTGTCTTCTAATAAGGATGCACGATATTGAAGCATTGGTTTCGTAAG-AATGCTTTCTTCC
195 AACTTAGTCTTCTCATAAAGATACACGATATTGATGCATTGGTTTCGTAAGAAAGGCTTTCTTCC
* * * *
504397 CACCAATTTTTGTAAAGCCTAAGTTCATGCCTCAATTATGGCAAACATGGATTCTAGTAATGATC
260 CACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAATTGTGACAAACATGGATTCTAGTAATGATC
* * *
504462 TTCAATCATTTTGTGATTAGGCACTATAAATACATTCTCCTCATTAGGATAAATGATATTGATAA
325 TTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCT-ATTAGGATAAATGATATTGATGA
* * * * * * * *
504527 TTTTCTTTTGAATTGAAATCGTTTCCTTGCCCTATTTTCCTTAAAATAAAAGTTAATCCTTTAGA
389 TTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAA
* *
504592 TAAGGCAAGCATTGATTCCCC
454 TAAGGCAAGCATTGATTCTCA
* * * * **
504613 TAACAATCTCCTTTCTTTTCATTATTGGGAACCAAAAACACATTCCATTCATTAGGATACATGGT
1 TAACAGTCTCCATTCTTTTCATGATTGGGAACCAAAAACACATTCCTTTCATTAGGATACATGAC
* * * * * * *
504678 ATTGACACTTTAGG-GTCGCAAGAAAAGCATCTCTTTTATCCATTTTTTTATAGAGTCAAAGTTT
66 ATTGACGCTTT-GGTGTCGCAAGAAAAGTATTTCTTTCAACCA-TTTTTGATAGAATCAAAGTTT
* * ** *
504742 GTCTCTTAAATAAGACAAACATGAATAGCCAT-CTAATCCCTAACCCTTTCA-AATT--------
129 GTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCC-CATTCTTTCAGGATTAGGCACCA
* * * * * *
504797 T--A--T-G-C-AC-CATAAAGGATACACGATATTAATGCTTTGGTTTCATAAGAAAAGTTTTCT
193 TAAACTTAGTCTTCTCATAAA-GATACACGATATTGATGCATTGGTTTCGTAAGAAAGGCTTTCT
* * * * * *
504854 TCCCATCAATTTTTATAAAGTCTAAGTTCGTACCTCAATTG-GATAAGCATGGATTCTAGTACTG
257 TCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAATTGTGACAAACATGGATTCTAGTAATG
* * * * * * * * * *
504918 ACCTTCACTCATTCTGTGACTAGGCACTTTAAACACATTCTCTTTAGTAGGAAAAATGACATTGG
322 ATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTC-CTATTAGGATAAATGATATTGA
* * * * *
504983 TGATTTTCTTTTGCATGGAAATCTTTTCTTTACCTTATTTTACTAAAAATTAAAGTTCATCCCTT
386 TGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTT
505048 AAATAAGGCAAGCATTGATTCTCA
451 AAATAAGGCAAGCATTGATTCTCA
* * * * *
505072 TAACAGTCT--ACTCTTTTCATGATTCGAAACCAAAAACACATTCCTTTCATTAGCATACACGAC
1 TAACAGTCTCCATTCTTTTCATGATTGGGAACCAAAAACACATTCCTTTCATTAGGATACATGAC
* ** * *
505135 ATTGATGCACTGGTGCCGCAAG-AAAGTATTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGT
66 ATTGACGCTTTGGTGTCGCAAGAAAAGTATTTCTTTCAACCATTTTTGATAGAATCAAAGTTTGT
* * * * *
505199 CTCCTAAATAAGACAAACTTGAATAGTCCTACTAATCCCTATTCTTTCAAGGATTAGGCGCCATA
131 CTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTC-AGGATTAGGCACCATA
* * * * * * * *
505264 AACATAGTCTTCTTAT-AAGACTACATGTTGTTGATGCTTTGGTTTTGTAAGTAAGGCTTTCCTT
195 AACTTAGTCTTCTCATAAAGA-TACACGATATTGATGCATTGGTTTCGTAAGAAAGGCTTT-CTT
** * * * * *
505328 -TGACCAAATTTTGTAAAGTCTAACTTTGTGCCTTAATTGTGACAAATATGGATTCTAGTAATGA
258 CCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAATTGTGACAAACATGGATTCTAGTAATGA
* * * *
505392 TCCTCATTTATTTTGTGATTAGGCACTATAAACATATTCTCCTCATTAGGATAAAAGATATTGAT
323 TCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCT-ATTAGGATAAATGATATTGAT
* * * * * * * *
505457 AATTTTCTTTAGCATGTAAA-CTGTTTCCTTGCCTTATTTTCTTTAAAATTAAAGTCCATCCCTT
387 GATTTTCTTTTGCATGGAAATCT-TTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTT
505521 AAATAAGGCAAGCATTGATTCTCA
451 AAATAAGGCAAGCATTGATTCTCA
* * * ** *
505545 TAACAGTCTCCACTATTTTAATGGCTAGGAACCAAAAACACATTCCTTTCATTAGGATACATGAC
1 TAACAGTCTCCATTCTTTTCATGATTGGGAACCAAAAACACATTCCTTTCATTAGGATACATGAC
* * *
505610 ATTGACGCTTTGGGGTCGCAAG-AAAGCATTTCTTTTAA-CACTTTTTGATAGAATCAAAGTTTG
66 ATTGACGCTTTGGTGTCGCAAGAAAAGTATTTCTTTCAACCA-TTTTTGATAGAATCAAAGTTTG
* * * * * * *
505673 CCTCTTATATAAGACAAACTTGAATA-TCAATACTTATCCCTATTCTTTTCAAGATTTGGCACCA
130 TCTCTTAAATAAGACAAACATGAATAGTC-ATACTAATCCCCATTC-TTTCAGGATTAGGCACCA
* *
505737 TAAACTTAGTCTTCTCATAACA-ATACATGATATTGATGCTTTGGTTTCGTAAGAAAGGCTTTCT
193 TAAACTTAGTCTTCTCATAA-AGATACACGATATTGATGCATTGGTTTCGTAAGAAAGGCTTTCT
* * * *
505801 TCCCACCAATTTTAGTAAAGTCTAAGTTCGTGCCTCATTTATGACAAACATGGATTTTAGTAATG
257 TCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAATTGTGACAAACATGGATTCTAGTAATG
* * * *
505866 ATCTTCATTCATTTTCTGATTAGGCACTATAAATACATTCTTCTTTTCAGGATAAATGATATTGA
322 ATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTATT-AGGATAAATGATATTGA
* * * * * * * *
505931 TGACTTTCTTTTGAATGGAAATTTTTTCTTTACCTTATTTTCGC-T-AAATTAATGTCCATCCCT
386 TGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTC-CTTAAAATCAAAGTTCATCCCT
* * *
505994 TAAATAATGTAAACATTGATTCT-A
450 TAAATAAGGCAAGCATTGATTCTCA
* *
506018 GTAACAGTCTCTATTTTTTTCATGATTGGGAACCAAAAACACATTCCTTTCATTAGGATACATGA
1 -TAACAGTCTCCATTCTTTTCATGATTGGGAACCAAAAACACATTCCTTTCATTAGGATACATGA
* ** * *
506083 CATTGACACAATGGTGTCGGAAGAAAAGCATTTCTTTCAACCATTTTTGATAGAATCAAAGTTTG
65 CATTGACGCTTTGGTGTCGCAAGAAAAGTATTTCTTTCAACCATTTTTGATAGAATCAAAGTTTG
* * ** * * * *
506148 TCTCTTAAATAAGACAAACAAGAATAGTGATACTAATCCTGATTATTTTCAGGATTTGGCGCTAT
130 TCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATT-CTTTCAGGATTAGGCACCAT
* * * * * *
506213 AAACTTAGTCTTCCCATAAAGATACATGATATTGATGCTTTTGTTTCGTGAGAAAAGGGTTTCTT
194 AAACTTAGTCTTCTCATAAAGATACACGATATTGATGCATTGGTTTCGTAAG-AAAGGCTTTCTT
* * * *
506278 TCCACCAATTTTTGTAAAGTCTATGTTCGTGCCTCATTTGTGACAAACATGGATTCTAATAATGA
258 CCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAATTGTGACAAACATGGATTCTAGTAATGA
* * ** * *
506343 TCTTCATTCATTTTCTAATTAGGCTTTATCAGCACATTCTCCTTATTAGGATAAATGATATTGAT
323 TCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCC-TATTAGGATAAATGATATTGAT
* * *
506408 GATTTTCTTTTGCGTGGAAATCTTTTCTTTACCCTATTTCCCTTAAAATCAAAGTTCATCCCTTA
387 GATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTA
* *
506473 GATAAGGCAAGCATCGATTCTCA
452 AATAAGGCAAGCATTGATTCTCA
* * * * * *
506496 TAATAGTCTCCATTCCTGTCATGATTGGGAACCAAAAACATATTCCATTCAATAGGATACATGAC
1 TAACAGTCTCCATTCTTTTCATGATTGGGAACCAAAAACACATTCCTTTCATTAGGATACATGAC
* * * ** * *
506561 ATTGATGCTTTGGTGTCGCACGAAAAGCATTTCTTTCAACTGTTTTTGATAGAATCAATGTTTTT
66 ATTGACGCTTTGGTGTCGCAAGAAAAGTATTTCTTTCAACCATTTTTGATAGAATCAAAGTTTGT
* * * *
506626 CTCTTAAATAAGACAAATATGAATGGTCATCCTAATCCCCATTCTTTCAAGGATTCGGCACCATA
131 CTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTC-AGGATTAGGCACCATA
* * * * * * * * * ** *
506691 AACATAGTCTTCTCA-AAAAACTGCATGATGTGGATGCTTTGATTTCGCAAGTGAGGCTTTCCTC
195 AACTTAGTCTTCTCATAAAGA-TACACGATATTGATGCATTGGTTTCGTAAGAAAGGCTTTCTTC
** * * *
506755 CTGCCAATTTTTGTAAAGTCTAACTTCGTACCTCAATTGTGATAAACATGGATTCTAGTAATGAT
259 CCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAATTGTGACAAACATGGATTCTAGTAATGAT
* *
506820 CTTCGTTAATTTTGTGATTAGGCACTATAAACACATTCT
324 CTTCATTCATTTTGTGATTAGGCACTATAAACACATTCT
506859 TCTTGTTAGG
Statistics
Matches: 6247, Mismatches: 1075, Indels: 309
0.82 0.14 0.04
Matches are distributed among these distances:
455 53 0.01
456 25 0.00
457 61 0.01
458 4 0.00
459 181 0.03
460 45 0.01
461 1 0.00
462 1 0.00
464 1 0.00
465 1 0.00
466 1 0.00
467 1 0.00
469 9 0.00
470 367 0.06
471 36 0.01
472 67 0.01
473 166 0.03
474 193 0.03
475 1187 0.19
476 2713 0.43
477 786 0.13
478 14 0.00
479 327 0.05
480 7 0.00
ACGTcount: A:0.31, C:0.18, G:0.14, T:0.36
Consensus pattern (474 bp):
TAACAGTCTCCATTCTTTTCATGATTGGGAACCAAAAACACATTCCTTTCATTAGGATACATGAC
ATTGACGCTTTGGTGTCGCAAGAAAAGTATTTCTTTCAACCATTTTTGATAGAATCAAAGTTTGT
CTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTCAGGATTAGGCACCATAA
ACTTAGTCTTCTCATAAAGATACACGATATTGATGCATTGGTTTCGTAAGAAAGGCTTTCTTCCC
ACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAATTGTGACAAACATGGATTCTAGTAATGATCT
TCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTATTAGGATAAATGATATTGATGATT
TTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATA
AGGCAAGCATTGATTCTCA
Found at i:507301 original size:13 final size:13
Alignment explanation
Indices: 507280--507310 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
507270 CGATACATAG
*
507280 TACAATGTATCGA
1 TACATTGTATCGA
507293 TACATTGTATCGA
1 TACATTGTATCGA
507306 TACAT
1 TACAT
507311 GAAGAAATGT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.35, C:0.16, G:0.13, T:0.35
Consensus pattern (13 bp):
TACATTGTATCGA
Found at i:510212 original size:19 final size:18
Alignment explanation
Indices: 510188--510253 Score: 70
Period size: 19 Copynumber: 3.8 Consensus size: 18
510178 ACAATTTGTC
510188 CATGTATCGATACAACGAA
1 CATGTATCGATACAAC-AA
510207 CATGTATCGAT---AC-A
1 CATGTATCGATACAACAA
510221 -ATGTATCGATACAAACCAA
1 CATGTATCGATAC-AA-CAA
510240 CATGTATCGATACA
1 CATGTATCGATACA
510254 TCTAGGTGTG
Statistics
Matches: 40, Mismatches: 0, Indels: 14
0.74 0.00 0.26
Matches are distributed among these distances:
13 10 0.25
14 1 0.03
16 2 0.05
17 1 0.03
18 1 0.03
19 13 0.32
20 12 0.30
ACGTcount: A:0.41, C:0.21, G:0.14, T:0.24
Consensus pattern (18 bp):
CATGTATCGATACAACAA
Found at i:510226 original size:13 final size:13
Alignment explanation
Indices: 510208--510234 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
510198 TACAACGAAC
510208 ATGTATCGATACA
1 ATGTATCGATACA
510221 ATGTATCGATACA
1 ATGTATCGATACA
510234 A
1 A
510235 ACCAACATGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.41, C:0.15, G:0.15, T:0.30
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:510247 original size:33 final size:32
Alignment explanation
Indices: 510189--510253 Score: 112
Period size: 33 Copynumber: 2.0 Consensus size: 32
510179 CAATTTGTCC
*
510189 ATGTATCGATACAACGAACATGTATCGATACA
1 ATGTATCGATACAACCAACATGTATCGATACA
510221 ATGTATCGATACAAACCAACATGTATCGATACA
1 ATGTATCGATAC-AACCAACATGTATCGATACA
510254 TCTAGGTGTG
Statistics
Matches: 31, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
32 12 0.39
33 19 0.61
ACGTcount: A:0.42, C:0.20, G:0.14, T:0.25
Consensus pattern (32 bp):
ATGTATCGATACAACCAACATGTATCGATACA
Found at i:510769 original size:16 final size:16
Alignment explanation
Indices: 510748--510792 Score: 65
Period size: 15 Copynumber: 2.8 Consensus size: 16
510738 GTTTTCATTT
510748 TTCTCCCCTTAAAAAA
1 TTCTCCCCTTAAAAAA
*
510764 TTCT-CCCTTTAAAAA
1 TTCTCCCCTTAAAAAA
510779 TTCTCCCCCTTAAA
1 TTCT-CCCCTTAAA
510793 CGATTATCTC
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
15 14 0.56
16 4 0.16
17 7 0.28
ACGTcount: A:0.31, C:0.33, G:0.00, T:0.36
Consensus pattern (16 bp):
TTCTCCCCTTAAAAAA
Found at i:510827 original size:22 final size:20
Alignment explanation
Indices: 510778--510831 Score: 74
Period size: 19 Copynumber: 2.6 Consensus size: 20
510768 CCCTTTAAAA
*
510778 ATTCTCCCCCTTAAACGATT
1 ATTCTCCCCCTTAAACAATT
510798 A-TCTCCCCCTTAAACAATT
1 ATTCTCCCCCTTAAACAATT
510817 ATCTTCTCCCCCTTA
1 A--TTCTCCCCCTTA
510832 TGTAAAAATT
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
19 18 0.60
20 1 0.03
22 11 0.37
ACGTcount: A:0.24, C:0.39, G:0.02, T:0.35
Consensus pattern (20 bp):
ATTCTCCCCCTTAAACAATT
Found at i:518408 original size:33 final size:33
Alignment explanation
Indices: 518370--518440 Score: 92
Period size: 33 Copynumber: 2.2 Consensus size: 33
518360 GTTACAAGCT
518370 ATGTATCGATACATT-T-CTTCATGTATCGATACA
1 ATGTATCGATACATTGTAC--CATGTATCGATACA
*
518403 ATGTATCGGTACATTGTACCATGTATCGATACA
1 ATGTATCGATACATTGTACCATGTATCGATACA
*
518436 TTGTA
1 ATGTA
518441 CCATGTATCG
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
33 32 0.94
34 1 0.03
35 1 0.03
ACGTcount: A:0.30, C:0.17, G:0.15, T:0.38
Consensus pattern (33 bp):
ATGTATCGATACATTGTACCATGTATCGATACA
Found at i:518428 original size:20 final size:20
Alignment explanation
Indices: 518403--518455 Score: 97
Period size: 20 Copynumber: 2.6 Consensus size: 20
518393 TATCGATACA
*
518403 ATGTATCGGTACATTGTACC
1 ATGTATCGATACATTGTACC
518423 ATGTATCGATACATTGTACC
1 ATGTATCGATACATTGTACC
518443 ATGTATCGATACA
1 ATGTATCGATACA
518456 AATAGTGATA
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 32 1.00
ACGTcount: A:0.30, C:0.19, G:0.17, T:0.34
Consensus pattern (20 bp):
ATGTATCGATACATTGTACC
Found at i:518530 original size:19 final size:20
Alignment explanation
Indices: 518485--518538 Score: 74
Period size: 19 Copynumber: 2.7 Consensus size: 20
518475 CTGCCAGTTT
**
518485 CATGTATCGATACAATTTGTC
1 CATGTATCGATACAA-TTGAA
518506 CATGTATCGATACAA-TGAA
1 CATGTATCGATACAATTGAA
518525 CATGTATCGATACA
1 CATGTATCGATACA
518539 GTGTATCGAT
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
19 16 0.52
21 15 0.48
ACGTcount: A:0.35, C:0.19, G:0.15, T:0.31
Consensus pattern (20 bp):
CATGTATCGATACAATTGAA
Found at i:518545 original size:13 final size:13
Alignment explanation
Indices: 518527--518551 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
518517 ACAATGAACA
518527 TGTATCGATACAG
1 TGTATCGATACAG
518540 TGTATCGATACA
1 TGTATCGATACA
518552 AAGCAGCATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.20, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAG
Found at i:518549 original size:32 final size:33
Alignment explanation
Indices: 518508--518571 Score: 94
Period size: 32 Copynumber: 2.0 Consensus size: 33
518498 AATTTGTCCA
* *
518508 TGTATCGATACAATG-AACATGTATCGATACAG
1 TGTATCGATACAAAGCAACATGTATCAATACAG
*
518540 TGTATCGATACAAAGCAGCATGTATCAATACA
1 TGTATCGATACAAAGCAACATGTATCAATACA
518572 TCTAGGTGTG
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
32 14 0.50
33 14 0.50
ACGTcount: A:0.39, C:0.17, G:0.17, T:0.27
Consensus pattern (33 bp):
TGTATCGATACAAAGCAACATGTATCAATACAG
Found at i:522322 original size:13 final size:13
Alignment explanation
Indices: 522304--522332 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
522294 ACAACATTCC
522304 TTGTATCGATACA
1 TTGTATCGATACA
522317 TTGTATCGATACA
1 TTGTATCGATACA
522330 TTG
1 TTG
522333 GGTACTATTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.28, C:0.14, G:0.17, T:0.41
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:524230 original size:42 final size:40
Alignment explanation
Indices: 524170--524257 Score: 106
Period size: 39 Copynumber: 2.1 Consensus size: 40
524160 TGAAAATAAA
* * *
524170 TTTTTACATAAGGGGGAGAAGATAATTGTTTAAGGGGGAGATT
1 TTTTTACATAA---GGAGGAGATAATCGTTTAAGGGGGAGAAT
*
524213 TTTTTATA-AAGGAGGAGATAATCGTTTAAGGGGGAGAAT
1 TTTTTACATAAGGAGGAGATAATCGTTTAAGGGGGAGAAT
524252 TTTTTA
1 TTTTTA
524258 AAGAAAAAAA
Statistics
Matches: 41, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
39 32 0.78
42 2 0.05
43 7 0.17
ACGTcount: A:0.33, C:0.02, G:0.30, T:0.35
Consensus pattern (40 bp):
TTTTTACATAAGGAGGAGATAATCGTTTAAGGGGGAGAAT
Found at i:524248 original size:19 final size:19
Alignment explanation
Indices: 524189--524249 Score: 61
Period size: 19 Copynumber: 3.2 Consensus size: 19
524179 AAGGGGGAGA
524189 AGATAATTGTTTAAGGGGG
1 AGATAATTGTTTAAGGGGG
* * *
524208 AGAT-TTTTTTATAAAGGAGG
1 AGATAATTGTT-T-AAGGGGG
*
524228 AGATAATCGTTTAAGGGGG
1 AGATAATTGTTTAAGGGGG
524247 AGA
1 AGA
524250 ATTTTTTAAA
Statistics
Matches: 32, Mismatches: 7, Indels: 6
0.71 0.16 0.13
Matches are distributed among these distances:
18 4 0.12
19 14 0.44
20 11 0.34
21 3 0.09
ACGTcount: A:0.34, C:0.02, G:0.33, T:0.31
Consensus pattern (19 bp):
AGATAATTGTTTAAGGGGG
Found at i:524827 original size:33 final size:32
Alignment explanation
Indices: 524785--524849 Score: 94
Period size: 33 Copynumber: 2.0 Consensus size: 32
524775 ACACACCCAG
*
524785 ATGTATCGATACATGCTGCTTTGTATCAATACA
1 ATGTATCGATACATG-TGCATTGTATCAATACA
* *
524818 ATGTATCGATACATGTTCATTGTATCGATACA
1 ATGTATCGATACATGTGCATTGTATCAATACA
524850 TGAACAAATT
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
32 14 0.48
33 15 0.52
ACGTcount: A:0.31, C:0.17, G:0.15, T:0.37
Consensus pattern (32 bp):
ATGTATCGATACATGTGCATTGTATCAATACA
Found at i:524862 original size:21 final size:19
Alignment explanation
Indices: 524819--524874 Score: 67
Period size: 21 Copynumber: 2.8 Consensus size: 19
524809 ATCAATACAA
**
524819 TGTATCGATACATGTTCAT
1 TGTATCGATACATGAACAT
524838 TGTATCGATACATGAACAAAT
1 TGTATCGATACATGAAC--AT
*
524859 TGTATTGATACATGAA
1 TGTATCGATACATGAA
524875 ACTGGCAATA
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
19 15 0.47
21 17 0.53
ACGTcount: A:0.36, C:0.12, G:0.16, T:0.36
Consensus pattern (19 bp):
TGTATCGATACATGAACAT
Found at i:526603 original size:476 final size:475
Alignment explanation
Indices: 525671--531971 Score: 6728
Period size: 476 Copynumber: 13.3 Consensus size: 475
525661 GCTTTCACTT
* * *
525671 CTCATTAGGATAAATGATATTGATGATTTGCCTTTGCAAGTAAATCTTTTCTTTGCCTAGTTTTC
1 CTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGTAAATCTTTTCTTTGCCTA-TTTTC
* * *
525736 GTTAAAATCAAAGTTCATCCCTT-AACAAGGCAAGCA-TGAATTCTCGTAACAGTCTCCATTCTT
65 CTTAAAATCAAAGTTCATCCCTTAAATAAGGCAAGCATTG-ATTCTCATAACAGTCTCCATTCTT
* * * * * * * * * ** *
525799 TTCATGACTAGGATCCAGAATCATATTCCATTCATTTGGATACAAGACAATGACGCTTTAATGCC
129 TTCATGATTGGGAACCAAAAACATATTCCTTTCATTAGGATACATGACATTGACGCTTTGGTGTC
* * ** * * *
525864 ACAAGAAAAGTATTTCTTTCAATGATTTTTGATAGAATCAAAGTTTGTCTCTCAAATAGGATAAA
194 GCAAGAAAAGCATTTCTTTCAACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAA
* *
525929 CCTGAATA-TCAATACCT-ATCCCCATTCTTTTCAA-GATTTGGCACCATAAA-ATTAGTCTTCT
259 CATGAATAGTC-ATA-CTAATCCCCATTCTTTTCAAGGATTAGGCACCATAAACA-TAGTCTTCT
* * * * ** **
525990 CATAACGATACATGATATTGATGCTTTGGTTTCATTAGAAAATGG-TTTCTTTTCACCAATTTTT
321 TA-AAAGATACACGATATTGATGCTTTGATTTCACAAG-AAA-GGCTTTCTTCCCACCAATTTTT
* * * * *
526054 GTAAAGTCTATGTTCATGCCTCATTTGTGACAAGCATGGATTCTAATAATGATCTTCATTCATTT
383 GTAAAGTCTAAGTTCGTGCCTCAATTGTGACAAACATGGATTCTAGTAATGATCTTCATTCATTT
* * * * *
526119 TTTGATTAGGCTCTACAAACAAATTCCC
448 TGTGATTAGGCACTATAAACACATTCTC
* * * *
526147 CTTATTAGGATAAATGATATTGA-GTATTTTCTTTTGCATGGAAATCTTTTCTTTATCCAATTTT
1 CTCATTAGGATAAATGATATTGATG-ATTTTCTTTTGCATGTAAATCTTTTCTTT-GCCTATTTT
* * * *
526211 CCTTAAAAACAAAGTACATCCCTTAAATAAGGCAAGCATTGATTCTCATAACAGTCGCCATTCCT
64 CCTTAAAATCAAAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCATAACAGTCTCCATTCTT
* * * * *
526276 TTCATGATTGGGAACCAAAAGCATATTCCATTCAATAGGATACATGACATTGATGCTTTGGTGTT
129 TTCATGATTGGGAACCAAAAACATATTCCTTTCATTAGGATACATGACATTGACGCTTTGGTGTC
* * * * * *
526341 GCACGAAACGCATTTCTTTCAACCATTTTTGATAGAATCAACGGTTGTCTCTTAAATAATACATA
194 GCAAGAAAAGCATTTCTTTCAACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAA
* * *
526406 CATGAATAGTCATACTAATCCCTA-TCCTTTCAAGGATTAGGCACCGTAAACATAGTCTTCTTAA
259 CATGAATAGTCATACTAATCCCCATTCTTTTCAAGGATTAGGCACCATAAACATAGTCTTCTTAA
* * * * ** ** * *
526470 AAAACTGCATGATGTTGATGCTTTGATTTTGCAAGTGAGGCTTTCCTCCCACCAATTTTTCTAAA
324 AAGA-TACACGATATTGATGCTTTGATTTCACAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAA
* * * ** * *
526535 GTCTAACTTCGTACCTTAATTGTGACAGGCATGGATTCTAGTAATGATCTTCGTTCGTTTTGTGA
388 GTCTAAGTTCGTGCCTCAATTGTGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGA
*
526600 TTAGGCACTATAAACACATTCTT
453 TTAGGCACTATAAACACATTCTC
* * *
526623 CTCATTAGGATAAATGATATTGATGATTTTCCTTTACATGTAAATCGTTTCTTTGCCTAGTTTTC
1 CTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGTAAATCTTTTCTTTGCCTA-TTTTC
* * * *
526688 GTTAAAATCAAAGTTCATCCCTTAACTAAGGCAAGCA-TGAATTCTCGTAATAGTCTCCATTCTT
65 CTTAAAATCAAAGTTCATCCCTTAAATAAGGCAAGCATTG-ATTCTCATAACAGTCTCCATTCTT
* * * * * * * * *
526752 TTCATGATTGGGATCCAGAACCATATTCCTTTCATTGGGATACAAGACAATGACACTTTGATGCC
129 TTCATGATTGGGAACCAAAAACATATTCCTTTCATTAGGATACATGACATTGACGCTTTGGTGTC
** * * * * * *
526817 ATAAGAAAAGTATTTCTTTTAATCATTTTTGATAGAATCAAAGTTTATCTCTTAAATAGGATAAA
194 GCAAGAAAAGCATTTCTTTCAACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAA
* * * *
526882 CCTGAATAG-CAATACTTATCCCCATTCTTTTCAA-GATTTGGCACCACAAA-ATTAGTCTTCTC
259 CATGAATAGTC-ATACTAATCCCCATTCTTTTCAAGGATTAGGCACCATAAACA-TAGTCTTCT-
* *
526944 ATAACA-ATACACGATATTGATGCTTTGGTTTCATC-AGAAAGGCTTTCTTCCCACCAATTTTTG
321 -TAAAAGATACACGATATTGATGCTTTGATTTCA-CAAGAAAGGCTTTCTTCCCACCAATTTTTG
* *
527007 TAAAGTCTAAGTTCGTGCCTCATTTGTGACAAACATGGATTCTAATAATGATCTTCATTCATTTT
384 TAAAGTCTAAGTTCGTGCCTCAATTGTGACAAACATGGATTCTAGTAATGATCTTCATTCATTTT
* *
527072 CTGATTAGGCCCTATAAACACATTCTC
449 GTGATTAGGCACTATAAACACATTCTC
* * * * *
527099 CTTATTAGGATAAATGATATTAATGATTTTCTTTTGAATGGAAATATTTTCTTTGCCTTATTTTC
1 CTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGTAAATCTTTTCTTTGCC-TATTTTC
* * * *
527164 CTTAAAATTAAAGTTTATCCCTTAAATAAGGCAAACATGGATTCTCATAACAGTCTCCATTCTTT
65 CTTAAAATCAAAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCATAACAGTCTCCATTCTTT
* * * * *
527229 TCATGATTGGGAACCAAAAACACATTCCTTTTATTAGGATACATGACATTGACACATTCGTGTCG
130 TCATGATTGGGAACCAAAAACATATTCCTTTCATTAGGATACATGACATTGACGCTTTGGTGTCG
* *
527294 CAAGAAAAGCATTTCTTTCAACCGTTTTTGATAGAATCAAAG-TTGTTCTCCTAAATAAGACAAA
195 CAAGAAAAGCATTTCTTTCAACCATTTTTGATAGAATCAAAGTTTG-TCTCTTAAATAAGACAAA
* * * * * * ** * *
527358 GAAGAATAGTCATACAAATCCCGATTATTTTC-AGGATTTGGCATGATAAACTTAGTCTTCTCAT
259 CATGAATAGTCATACTAATCCCCATTCTTTTCAAGGATTAGGCACCATAAACATAGTCTTCTTA-
* * * *** * *
527422 AAAGATACGCGATATTTATGTTTTTG-TTTTGTAAGAAAATGG-TTTTTTTCCACCAATTTTTGT
323 AAAGATACACGATATTGATG-CTTTGATTTCACAAG-AAA-GGCTTTCTTCCCACCAATTTTTGT
* *** * * * **
527485 AAAGTCTATGTTCACACCTCATTTGTAACAAACATGGATTCTAATAATGATCTTCATTCATTTCC
385 AAAGTCTAAGTTCGTGCCTCAATTGTGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTG
* * *
527550 TAATTAGGCTCTACAAACACATTCTC
450 TGATTAGGCACTATAAACACATTCTC
* * * * * *
527576 CTTATTAGGATAAACGAAATTCATGATTTTCTTTTGCATATAAATCTTTTCTTTACCCTATTTTC
1 CTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGTAAATCTTTTCTTT-GCCTATTTTC
* *
527641 CTTAAAATCAAAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCATAACAGTCTCTATTCCTT
65 CTTAAAATCAAAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCATAACAGTCTCCATTCTTT
* * * * *
527706 TCATGATTGGGAACCAAAAGCATACTCCATTCAATAGGATACATGACATTGATGCTTTGGTGTCG
130 TCATGATTGGGAACCAAAAACATATTCCTTTCATTAGGATACATGACATTGACGCTTTGGTGTCG
* *
527771 CACGAAAAGCATTTCTTTCAACCATTTTTGATAGAATCAACGTTTGTCTCTTAAATAAGACAAAC
195 CAAGAAAAGCATTTCTTTCAACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAAC
* *
527836 ATGAATAGTCATACTAATCCCTATTC-TTTCAAGGATTAGGCACCATAAACATAGTCTTCTCAAA
260 ATGAATAGTCATACTAATCCCCATTCTTTTCAAGGATTAGGCACCATAAACATAGTCTTCTTAAA
* * * * * * *
527900 AAACTGCATGATGTTGATGCTTTGATTTCACAAGTAAGGCTTTCCTCCCACCAATTTTTGTGAAG
325 AGA-TACACGATATTGATGCTTTGATTTCACAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAG
* * * * * * *
527965 TCTAACTTTGTACCTCAACTGTGACAAACATAGATTCTAGTAATGATCTTCGTTTATTTTGTGAT
389 TCTAAGTTCGTGCCTCAATTGTGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGAT
* *
528030 TAGGCACTATAAACACATTTTT
454 TAGGCACTATAAACACATTCTC
* * * * * *
528052 CTCATTAGGGTAAATGATATTGATGATTTTCATCTACATGTAAATCTTTTCTTTGCTTAGTGTTC
1 CTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGTAAATCTTTTCTTTGCCTA-TTTTC
* * * * *
528117 GTTAAAATCAAAGTTCAACCCTTAACTAAGGCAAGCATGGATTCTCGTAACAGTCTCCATTCTTT
65 CTTAAAATCAAAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCATAACAGTCTCCATTCTTT
* * * * * * ** *
528182 TCATGATTGGGATCGAGAATCATATTCCTTTCATTAGGATATAAT-ACAATGACGCTTTAATGCC
130 TCATGATTGGGAACCAAAAACATATTCCTTTCATTAGGATA-CATGACATTGACGCTTTGGTGTC
* ** * * * * *
528246 ACAAGAAAATTATTTCTTTCAATCATTTATGGTAGAATCAAAGTTTGCCTCTTAAA-AAGGATAA
194 GCAAGAAAAGCATTTCTTTCAACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAA-GACAA
* * * *
528310 ACCTGAATAG-CAATACTTATCCCCATTCTTTTCAA-GATTTGGCACCATAAA-ATTAGTCCTCT
258 ACATGAATAGTC-ATACTAATCCCCATTCTTTTCAAGGATTAGGCACCATAAACA-TAGTCTTCT
* * *
528372 TATAACGATACACGATATTGATGCTTTGGTTTCATAAGAAAGGCTTT-TTCCCACCAATTTTTGT
321 TA-AAAGATACACGATATTGATGCTTTGATTTCACAAGAAAGGCTTTCTTCCCACCAATTTTTGT
* * * * **
528436 AAAGTCTGAGTTCGTGCCTCATTTGTGATAAACATGGATTC---TAATGATCTTCGTTCACCTTG
385 AAAGTCTAAGTTCGTGCCTCAATTGTGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTG
* *
528498 TGATTAGGCACTATAAACATATCCTC
450 TGATTAGGCACTATAAACACATTCTC
* * * *
528524 CTCATTAGGATAAATGGTATTGATGATTTTCTTTTGCGTGAAAATCTTTTTCTTTGCCCTGTTTT
1 CTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGTAAATC-TTTTCTTTG-CCTATTTT
* *
528589 TCTTAAAATTAAAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCATAACAGTCTCCATTCTT
64 CCTTAAAATCAAAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCATAACAGTCTCCATTCTT
* * *
528654 TTCATGATTGGGAACCAAAAAC-TCATTCTTTTCGTTAGGATACATGACATTGACGCTTTGATGT
129 TTCATGATTGGGAACCAAAAACAT-ATTCCTTTCATTAGGATACATGACATTGACGCTTTGGTGT
** * * * *
528718 CGCAAGAAAAATATTTCTTTCAACCATTTTTTATAAAATCAAAGTTTATCTCTTACATAAGACAA
193 CGCAAGAAAAGCATTTCTTTCAACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAA
* * * *
528783 ACATGAATAATCATACTAATCCCCATTCTTTTC-AGCATTCGACACCATAAAC-TCAGTCTT-TT
258 ACATGAATAGTCATACTAATCCCCATTCTTTTCAAGGATTAGGCACCATAAACAT-AGTCTTCTT
* * * * ** **
528845 GTAAGGATACACGATATTGAAGCATT-AGTTTCGTAAGAAAGGCTTTCTTCATACCAATTTTTGT
322 -AAAAGATACACGATATTGATGCTTTGA-TTTCACAAGAAAGGCTTTCTTCCCACCAATTTTTGT
* * * *
528909 AAAGCCTAAGTTCGTGCCTCAATTGTGAAAAACATAGATTCTAGTAACGATCTTCATTCATTTTG
385 AAAGTCTAAGTTCGTGCCTCAATTGTGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTG
* * * *
528974 TGATTAGGTACGATAAACACAATCCC
450 TGATTAGGCACTATAAACACATTCTC
* * * * * * *
529000 CTCATTACGATAAATGATATTGATGATTTTTTTTTGTATTTATATCTTTTTTTTGCCCTATTTTT
1 CTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGTAAATCTTTTCTTTG-CCTATTTTC
* * * * *
529065 CTTAAAATCAAAGTTGATCCCTTAAATAAGGCAAGCATTGATTCTCGTAGCAATCTCAATTCTTT
65 CTTAAAATCAAAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCATAACAGTCTCCATTCTTT
* * * ** *
529130 TCATTATTGGGAACCAAAAACACATTCCTTTCATTAGGATACATGGCATTGACATTTTGGGGTCG
130 TCATGATTGGGAACCAAAAACATATTCCTTTCATTAGGATACATGACATTGACGCTTTGGTGTCG
* * * *
529195 CAAGAAAAGCATTTCTTTCATCCATTTTTGATAGAATCAAAGTTTATCTCTTAAATGAGATAAAC
195 CAAGAAAAGCATTTCTTTCAACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAAC
* * * * * * *
529260 CTGAATAGCCATACGAATCCCTATCCTTTTC-A-GATTTATGCACCATAAACTTAGTCTTC-TAA
260 ATGAATAGTCATACTAATCCCCATTCTTTTCAAGGA-TTAGGCACCATAAACATAGTCTTCTTAA
* * * *
529322 TAAGGATACACGATATT-ATTGCTTTGGTTTCATAAGAAAGGCTTTCTTCCCATCAATTTTTATA
324 -AA-GATACACGATATTGA-TGCTTTGATTTCACAAGAAAGGCTTTCTTCCCACCAATTTTTGTA
* * *
529386 AAGTCTAAGTTCGTGCCTCTACTG-GTACAAACATGGATTCTAGTAATGACCTTCATTCATTTTG
386 AAGTCTAAGTTCGTGCCTCAATTGTG-ACAAACATGGATTCTAGTAATGATCTTCATTCATTTTG
*
529450 TGATTAGGCACTTTAAACACATTCTC
450 TGATTAGGCACTATAAACACATTCTC
* * * *
529476 CTCATTAGAATAAATGA-ATTGGTGA-TTT-TTTTGCATGGAAATCTTTTCTTTGCCTTATTTTA
1 CTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGTAAATCTTTTCTTTGCC-TATTTTC
* * * ** *
529538 CTGAAAATTAATGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCATAATTGTCTCTATTCTTT
65 CTTAAAATCAAAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCATAACAGTCTCCATTCTTT
* * * * * * *
529603 TCATGATTCGGAACCAAAAACACATTCCTTTCATCAGCATACATGACATTGATGCATTGGTGTTG
130 TCATGATTGGGAACCAAAAACATATTCCTTTCATTAGGATACATGACATTGACGCTTTGGTGTCG
*
529668 C-----AAG-A--------AACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAAC
195 CAAGAAAAGCATTTCTTTCAACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAAC
* * *
529719 ATGAAGAGTCATACTAACCCCCATTC-TTTCAAGGATTAGGCACCATAAACATAGTCTTCTCT-T
260 ATGAATAGTCATACTAATCCCCATTCTTTTCAAGGATTAGGCACCATAAACATAGTCTTCT-TAA
* * * * * * *
529782 AAGTCTACATGATGTTGATGCTTTGATTTCGCAAGTAAGGCTTTCCTCCCACCAATTTTTGCAAA
324 AAG-ATACACGATATTGATGCTTTGATTTCACAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAA
* *
529847 GTCTAACTTCGTGCCTTAATTGTGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGA
388 GTCTAAGTTCGTGCCTCAATTGTGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGA
* * *
529912 TTAGGCACCATAAACATATTCTT
453 TTAGGCACTATAAACACATTCTC
529935 CTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGTAAATCTTTTCTTTGCCTAGTTTTC
1 CTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGTAAATCTTTTCTTTGCCTA-TTTTC
* * * *
530000 GTTAAAATCAAAGTTCATCCCTTAACTAAGGCAAGCA-GGAATTCTCGTAACAGTCTCCATTCTT
65 CTTAAAATCAAAGTTCATCCCTTAAATAAGGCAAGCATTG-ATTCTCATAACAGTCTCCATTCTT
* * * * * * *
530064 TTCATGATTGAGAACCAAAATCATATTCCTTTTATTAGGACACATGACAATGAGGCTTTGATG-C
129 TTCATGATTGGGAACCAAAAACATATTCCTTTCATTAGGATACATGACATTGACGCTTTGGTGTC
* * *
530128 TGCAAGAAAAGTATTTCTTTCAATCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAA
194 -GCAAGAAAAGCATTTCTTTCAACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAA
* * * * * *
530193 AAATTAATAATCTTACTAATCCCCATTCTTTTC-AGGATTAGGCACCACAAACTTAGTCTT-TTA
258 ACATGAATAGTCATACTAATCCCCATTCTTTTCAAGGATTAGGCACCATAAACATAGTCTTCTTA
* * * * * * *
530256 ATAAGGATACACGATATTAAAGCATTGGTTTCATAAGAAAAGCTTTCTTCCCACCAATTTTTATA
323 A-AA-GATACACGATATTGATGCTTTGATTTCACAAGAAAGGCTTTCTTCCCACCAATTTTTGTA
* * * * * *
530321 AAGCCTAAGTTCGTGCCTTAATTGTGAGAAACAAGGATTCTAGCAATGATTTTCATTCATTTTGT
386 AAGTCTAAGTTCGTGCCTCAATTGTGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGT
* *
530386 GATTAGGCATTATAATCACATTCTC
451 GATTAGGCACTATAAACACATTCTC
* *
530411 CTCATTAGGATAAATGATATTGATAATTTTCTTTTGCATGTAAATCTTTTCTTTGCCCTATTTTG
1 CTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGTAAATCTTTTCTTTG-CCTATTTTC
* *
530476 CTTAAAATCAAAGTTCATCCCTGAAATAAGGCAAGCATTGATTCTCATAGCAGTCTCCATTCTTT
65 CTTAAAATCAAAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCATAACAGTCTCCATTCTTT
* * * * * * * *
530541 TCATGATTGGGAACTAGAAGCACATTCATTTCATTAAGATATATGACATTGACGCTTTGGGGTCG
130 TCATGATTGGGAACCAAAAACATATTCCTTTCATTAGGATACATGACATTGACGCTTTGGTGTCG
* *
530606 CAAGAAAAGCATTTCTTTCAGCCATTTTTGATAGAATCGAAGTTTGTCTCTTAAATAAGACAAAC
195 CAAGAAAAGCATTTCTTTCAACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAAC
*
530671 ATGAATAGTCATACTAAT--CC---CTATTC-----TT-----CC-----C--A-------T-AA
260 ATGAATAGTCATACTAATCCCCATTCTTTTCAAGGATTAGGCACCATAAACATAGTCTTCTTAAA
* ** ** * * * * * * **
530706 AGATATACGATGCTGACACTTTGGTTTCATAAGAAAAGCTTTCTTCCCTCAAATTCTGCTAAAGT
325 AGATACACGATATTGATGCTTTGATTTCACAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGT
* * * **
530771 CTAAGTCCATGCCTCAATTGTGAC-AACAT-GACTTTTAGTAATGATCTTCATTCGCTTTGTGAT
390 CTAAGTTCGTGCCTCAATTGTGACAAACATGGA-TTCTAGTAATGATCTTCATTCATTTTGTGAT
*** *
530834 TTCTCACTATAAGCACATTCTC
454 TAGGCACTATAAACACATTCTC
* * *
530856 CTCATTAGGATAAAAGATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTCGCCTGATTTTC
1 CTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGTAAATCTTTTCTTTGCCT-ATTTTC
* * *
530921 CTTAAAATTAAAGTGT-ATCCCTTACATGAGGCAAGCATTGATTCTCATAACAGTCTCCATTCTT
65 CTTAAAATCAAAGT-TCATCCCTTAAATAAGGCAAGCATTGATTCTCATAACAGTCTCCATTCTT
* * * * * ** * * *
530985 TTCATAATT-GGAACCAAAAACACATTCTTTTCAATAGGATAGACAACATTGACACATTGGTGCC
129 TTCATGATTGGGAACCAAAAACATATTCCTTTCATTAGGATACATGACATTGACGCTTTGGTGTC
* * * * *
531049 GCAAGAACAGCATTTCTTTCAACCGTTTTTGATAGAATCAATGTTTGCCTCTTAAATAGGACAAA
194 GCAAGAAAAGCATTTCTTTCAACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAA
* * * * * *
531114 CATGAATAGTCATACT-AGCCCCTATTCTCTTCGA-GAATAGGCACCATAAACTTAGTTTTC-TA
259 CATGAATAGTCATACTAATCCCC-ATTCTTTTCAAGGATTAGGCACCATAAACATAGTCTTCTTA
** *
531176 ATAAGGATACACGATATTGATGCTTTCG-TTTCGTAAGAAAGGCTTTTTTCCCACCAATTTTTGT
323 A-AA-GATACACGATATTGATGCTTT-GATTTCACAAGAAAGGCTTTCTTCCCACCAATTTTTG-
* * * * *
531240 TAAAGTCTAAGTTCATGCCTTAATTATGACAAACAAGGGTTCTAGTAATGATCTTCATTCATTTT
384 TAAAGTCTAAGTTCGTGCCTCAATTGTGACAAACATGGATTCTAGTAATGATCTTCATTCATTTT
* ** *
531305 GTGATTAGGGAGAACAAACACATTCTC
449 GTGATTAGGCACTATAAACACATTCTC
* ** * * *
531332 CTTATTAACATAAATTATAGTGATGATTTTCTTTTGCATAG-AAATCTTTTCGTTGCCCTATTTT
1 CTCATTAGGATAAATGATATTGATGATTTTCTTTTGCAT-GTAAATCTTTTCTTTG-CCTATTTT
* * * * * * *
531396 CCTTAAAATTAAAGTTCATCCCCTAAATAAGGCAAGCATTAATTCTCGTAATAATCACCATTC-T
64 CCTTAAAATCAAAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCATAACAGTCTCCATTCTT
* * * * *
531460 TTCATGATTGGGAACCAAAAACACATTCCTTTCGTTAGGATACATGGCATTGACACATTGGTGTC
129 TTCATGATTGGGAACCAAAAACATATTCCTTTCATTAGGATACATGACATTGACGCTTTGGTGTC
* * * * * *
531525 GCAAGAAAAACATTTCTTTCAACCGTTTTTGATTGAATTAAAGTTTGTCTCTTAAAGAAAACAAA
194 GCAAGAAAAGCATTTCTTTCAACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAA
* * **
531590 CATGAATAGTCATACTAATCCCCATTCTTTTC-AGGAATAGGCACCATAAACTTAGTCTTCCCAT
259 CATGAATAGTCATACTAATCCCCATTCTTTTCAAGGATTAGGCACCATAAACATAGTCTTCTTA-
* * * *
531654 AAGGATATACGATATTGATGCTTTGGTTTCATAAGAAAGGCTTTCTTCCCACCAA-TTTTGTAAA
323 AAAGATACACGATATTGATGCTTTGATTTCACAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAA
* * * * *
531718 GTCTAAGTTCGTGTCTCATTTGGGACAAACATGGGTTCTAGTAATGATCTTCATTTATTTTGTGA
388 GTCTAAGTTCGTGCCTCAATTGTGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGA
** *
531783 TTAGGCGGTACAAACACATTCTC
453 TTAGGCACTATAAACACATTCTC
* * *
531806 CTTATTAGGATAAATTATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCTTATTTTC
1 CTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGTAAATCTTTTCTTTGCC-TATTTTC
* * * *
531871 CTTAAAATTAAAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCGTAATAGTCACCATT-TTT
65 CTTAAAATCAAAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCATAACAGTCTCCATTCTTT
**
531935 TCATGATTAAGAACCAAAAACATATTCCTTTCATTAG
130 TCATGATTGGGAACCAAAAACATATTCCTTTCATTAG
531972 AATATGCCAT
Statistics
Matches: 4863, Mismatches: 809, Indels: 308
0.81 0.14 0.05
Matches are distributed among these distances:
443 1 0.00
444 121 0.02
445 170 0.03
446 72 0.01
447 2 0.00
448 1 0.00
449 6 0.00
453 1 0.00
455 1 0.00
457 1 0.00
458 7 0.00
459 226 0.05
460 11 0.00
461 7 0.00
462 136 0.03
463 1 0.00
465 1 0.00
467 6 0.00
468 4 0.00
471 6 0.00
472 127 0.03
473 407 0.08
474 287 0.06
475 361 0.07
476 2235 0.46
477 648 0.13
478 17 0.00
ACGTcount: A:0.31, C:0.19, G:0.14, T:0.37
Consensus pattern (475 bp):
CTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGTAAATCTTTTCTTTGCCTATTTTCC
TTAAAATCAAAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCATAACAGTCTCCATTCTTTT
CATGATTGGGAACCAAAAACATATTCCTTTCATTAGGATACATGACATTGACGCTTTGGTGTCGC
AAGAAAAGCATTTCTTTCAACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACA
TGAATAGTCATACTAATCCCCATTCTTTTCAAGGATTAGGCACCATAAACATAGTCTTCTTAAAA
GATACACGATATTGATGCTTTGATTTCACAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTC
TAAGTTCGTGCCTCAATTGTGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTA
GGCACTATAAACACATTCTC
Found at i:532943 original size:476 final size:476
Alignment explanation
Indices: 532038--533125 Score: 1481
Period size: 476 Copynumber: 2.3 Consensus size: 476
532028 TTCTTTTCAA
* * *
532038 GATATTTAAGCATTGGTTTCATAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGCTTAAGTTC
1 GATATTAAAGCATTGGTTTCATAAGAAAGGCTTTCTTCCTACCAATTTTTGTAAAGCCTAAGTTC
* * * *
532103 ATACCTCAATTGTGACAAACACGGATTCTAGTAATGATCTTCATTCATTTTATGATTAGGGACTA
66 ATGCTTCAATTGTGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTATGATTAGGCACTA
* * * * * *
532168 TAAACATATTCTCGTCATTAGGATAAATGATATTGATGTTTTTCTTTTGCATGGAAATCTTTACG
131 TAAACATACTCTCCTCATTAGGATAAATGATATTCAAGTTTTTCTTTTACATGGAAATCTTTACA
* *
532233 TTGCCCTATTTTCCTTAAAATTAAAGTTCATCCCTTAAACAAAGCAAGCATTGATTCTCATATCA
196 TTGCCCTATTTTCCTTAAAATTAAAGCTCATCCCTTAAACAAAGCAAGCATTGATTCTCATAACA
* *
532298 GTCTCTATTCTTTTCATGATTGGGAACCAAAAACACAGCCATTTCATTAGGATACATGACATTGA
261 GTCTCCATTCTTTTCATGATTGAGAACCAAAAACACAGCCATTTCATTAGGATACATGACATTGA
* * *
532363 CACTTTGGTGTCAGAAGAAAAGCATTTCTTTCTATCGTTTTTTATAGAATCAAAGTTTAACACTA
326 CACTTTGGTGTCAGAAGAAAAGCATTTCTTTCTACCATTTTTGATAGAATCAAAGTTTAACACTA
* *
532428 AAATAAGACAAACATGAATAGTGATACTAATCTCTATTCTTTTCAAGATTAGGCACCATAAACTT
391 AAATAAGACAAACATGAATAATGATACTAATCCCTATTCTTTTCAAGATTAGGCACCATAAACTT
*
532493 AGTCTTCTAATATGGATACAT
456 AGTCTTCTAATAAGGATACAT
* *
532514 GATATTAAAGCATTGGTTTCGTGAGAAAGGCTTTCTTCCTACCAATTTTTGTAAAGCCTAAGTTC
1 GATATTAAAGCATTGGTTTCATAAGAAAGGCTTTCTTCCTACCAATTTTTGTAAAGCCTAAGTTC
* * * * * *
532579 ATGGTTCAACTGTGACAAAGATGGATTCTAGTAATGATCTTCATTCATTTTGTGACTAGGCACTC
66 ATGCTTCAATTGTGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTATGATTAGGCACTA
*
532644 TAAACATACTCTCCTCATTAGGATAAATGATATTCAAGTTTTTCTTTTACATGGAAATCTTTTCA
131 TAAACATACTCTCCTCATTAGGATAAATGATATTCAAGTTTTTCTTTTACATGGAAATCTTTACA
* * * **
532709 TTGCCCTATTTTCCTTAAAATTAAAGCTCATCGCTTAAATAAGGCAAGCATTGATTCTTGTAACA
196 TTGCCCTATTTTCCTTAAAATTAAAGCTCATCCCTTAAACAAAGCAAGCATTGATTCTCATAACA
* * *
532774 GTCTCCATT-TTTTCCATGATTGAGCACCGAAAACACATTCC-TTTCATTAGGATACATGACATT
261 GTCTCCATTCTTTT-CATGATTGAGAACCAAAAACACA-GCCATTTCATTAGGATACATGACATT
* * * **
532837 GACGCTTTGGTG-CCGCAAGAAAAGCATTTCTTT-TAACCATTTTTGATTGAATCAAAGTTTGTC
324 GACACTTTGGTGTCAG-AAGAAAAGCATTTCTTTCT-ACCATTTTTGATAGAATCAAAGTTTAAC
* *
532900 TCTTAAATAAGACAAACATGAATAAAT-ATACTAATCCCTATTCTTTTCAAGATTAGGCACCATA
387 ACTAAAATAAGACAAACATGAAT-AATGATACTAATCCCTATTCTTTTCAAGATTAGGCACCATA
*
532964 AACTTAGTCTTCTCATAAGGATACAT
451 AACTTAGTCTTCTAATAAGGATACAT
* * * * * * * * **
532990 GATATTGATGC-TCTAGCTTCCTAAGAAAGGCTTT-TTTCTCACCAATTTCTATAAAATCTAAGT
1 GATATTAAAGCAT-TGGTTTCATAAGAAAGGCTTTCTTCCT-ACCAATTTTTGTAAAGCCTAAGT
* * * *
533053 TCGTGCCTT-AATTGGGACAAACATGGATTCTAGTAATGAACTTCATTCATTTTCTGATTAGGCA
64 TCATG-CTTCAATTGTGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTATGATTAGGCA
*
533117 CTACAAACA
128 CTATAAACA
533126 CATTCTCTTT
Statistics
Matches: 535, Mismatches: 69, Indels: 16
0.86 0.11 0.03
Matches are distributed among these distances:
475 12 0.02
476 517 0.97
477 6 0.01
ACGTcount: A:0.32, C:0.18, G:0.14, T:0.36
Consensus pattern (476 bp):
GATATTAAAGCATTGGTTTCATAAGAAAGGCTTTCTTCCTACCAATTTTTGTAAAGCCTAAGTTC
ATGCTTCAATTGTGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTATGATTAGGCACTA
TAAACATACTCTCCTCATTAGGATAAATGATATTCAAGTTTTTCTTTTACATGGAAATCTTTACA
TTGCCCTATTTTCCTTAAAATTAAAGCTCATCCCTTAAACAAAGCAAGCATTGATTCTCATAACA
GTCTCCATTCTTTTCATGATTGAGAACCAAAAACACAGCCATTTCATTAGGATACATGACATTGA
CACTTTGGTGTCAGAAGAAAAGCATTTCTTTCTACCATTTTTGATAGAATCAAAGTTTAACACTA
AAATAAGACAAACATGAATAATGATACTAATCCCTATTCTTTTCAAGATTAGGCACCATAAACTT
AGTCTTCTAATAAGGATACAT
Found at i:534287 original size:105 final size:104
Alignment explanation
Indices: 534159--534501 Score: 279
Period size: 105 Copynumber: 3.3 Consensus size: 104
534149 CCGATGAAAT
* * *
534159 AACGAGGTTGGAGTATCCTCGATTGTGAAAAATTGGTATTTTTGGAAATAAAATCGGAATTGGAG
1 AACGGGGTTGGAGTATCCCCGATTGTGAAAAATTGGTATTTTTGGAAATAAAATCGGAGTTGGAG
*
534224 TATCCCCGATTAAAGGAGAAATTGGTGTTGTGAAAATAA
66 TATCCCCGATTAAAGGAGAAATTGGTGTTCTGAAAATAA
* * * * * *
534263 AACCGGGGTTGGAGTATCCCCGATTATGAAAAATCGATA-TTTTGAAAATAAAGTCGGGGTTGGA
1 AA-CGGGGTTGGAGTATCCCCGATTGTGAAAAATTGGTATTTTTGGAAATAAAATCGGAGTTGGA
* * * * * ** *
534327 GTATCCCCTCAGAAATAACGG-G--GTTGGAGTATCCCCGATGAT-T
65 GTAT-CCC-C-G-ATTAAAGGAGAAATTGGTGT-T--CTGAAAATAA
*
534370 AACGGGGTTGGAGTGTCCCCGATTGTGAAGAAATTGATGT-TTTTTGGAAATAAAATCGGAGTTG
1 AACGGGGTTGGAGTATCCCCGATTGTGAA-AAATTG--GTATTTTTGGAAATAAAATCGGAGTTG
* ** * *
534434 GAGTATCCCCGATTATA-GA-AAATTAATGTTTTGAAAGTAA
63 GAGTATCCCCGATTAAAGGAGAAATTGGTGTTCTGAAAATAA
* * *
534474 AATCGGAGTTGGAATATCCTCGATTGTG
1 AA-CGGGGTTGGAGTATCCCCGATTGTG
534502 GAGAATTGAG
Statistics
Matches: 180, Mismatches: 42, Indels: 33
0.71 0.16 0.13
Matches are distributed among these distances:
103 3 0.02
104 30 0.17
105 65 0.36
106 32 0.18
107 10 0.06
108 13 0.07
109 27 0.15
ACGTcount: A:0.32, C:0.12, G:0.27, T:0.29
Consensus pattern (104 bp):
AACGGGGTTGGAGTATCCCCGATTGTGAAAAATTGGTATTTTTGGAAATAAAATCGGAGTTGGAG
TATCCCCGATTAAAGGAGAAATTGGTGTTCTGAAAATAA
Found at i:534324 original size:51 final size:51
Alignment explanation
Indices: 534164--534334 Score: 198
Period size: 51 Copynumber: 3.3 Consensus size: 51
534154 GAAATAACGA
* * *
534164 GGTTGGAGTATCCTCGATTGTGAAAAATTGGTATTTTTGGAAATAAAATCGG
1 GGTTGGAGTATCCCCGATTATGAAAAATTGGTA-TTTTGAAAATAAAATCGG
** * * * * *
534216 AATTGGAGTATCCCCGATTAAAGGAGAAATTGGTGTTGTGAAAATAAAACCGG
1 GGTTGGAGTATCCCCGATT--ATGAAAAATTGGTATTTTGAAAATAAAATCGG
* * *
534269 GGTTGGAGTATCCCCGATTATGAAAAATCGATATTTTGAAAATAAAGTCGG
1 GGTTGGAGTATCCCCGATTATGAAAAATTGGTATTTTGAAAATAAAATCGG
534320 GGTTGGAGTATCCCC
1 GGTTGGAGTATCCCC
534335 TCAGAAATAA
Statistics
Matches: 97, Mismatches: 20, Indels: 5
0.80 0.16 0.04
Matches are distributed among these distances:
51 39 0.40
52 16 0.16
53 32 0.33
54 10 0.10
ACGTcount: A:0.33, C:0.12, G:0.26, T:0.29
Consensus pattern (51 bp):
GGTTGGAGTATCCCCGATTATGAAAAATTGGTATTTTGAAAATAAAATCGG
Found at i:534380 original size:27 final size:28
Alignment explanation
Indices: 534317--534392 Score: 102
Period size: 27 Copynumber: 2.8 Consensus size: 28
534307 AAAATAAAGT
*
534317 CGGGGTTGGAGTATCCCCTCA-GAAATAA
1 CGGGGTTGGAGTATCCCC-GATGAAATAA
*
534345 CGGGGTTGGAGTATCCCCGATG-ATTAA
1 CGGGGTTGGAGTATCCCCGATGAAATAA
*
534372 CGGGGTTGGAGTGTCCCCGAT
1 CGGGGTTGGAGTATCCCCGAT
534393 TGTGAAGAAA
Statistics
Matches: 44, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
27 25 0.57
28 19 0.43
ACGTcount: A:0.21, C:0.21, G:0.34, T:0.24
Consensus pattern (28 bp):
CGGGGTTGGAGTATCCCCGATGAAATAA
Found at i:534443 original size:54 final size:51
Alignment explanation
Indices: 534376--534510 Score: 150
Period size: 51 Copynumber: 2.6 Consensus size: 51
534366 GATTAACGGG
*
534376 GTTGGAGTGTCCCCGATTGTGAAGAAATTGATGTTTTTTGGAAA-TAAAATCGGA
1 GTTGGAGTATCCCCGATTGTG-AGAAATTGATG--TTTT-GAAAGTAAAATCGGA
* *
534430 GTTGGAGTATCCCCGATTAT-AGAAAATTAATGTTTTGAAAGTAAAATCGGA
1 GTTGGAGTATCCCCGATTGTGAG-AAATTGATGTTTTGAAAGTAAAATCGGA
* *
534481 GTTGGAATATCCTCGATTGTG-GAGAATTGA
1 GTTGGAGTATCCCCGATTGTGAGA-AATTGA
534511 GCAACTCAAC
Statistics
Matches: 70, Mismatches: 7, Indels: 11
0.80 0.08 0.12
Matches are distributed among these distances:
50 5 0.07
51 37 0.53
52 2 0.03
53 8 0.11
54 18 0.26
ACGTcount: A:0.32, C:0.10, G:0.26, T:0.33
Consensus pattern (51 bp):
GTTGGAGTATCCCCGATTGTGAGAAATTGATGTTTTGAAAGTAAAATCGGA
Found at i:536896 original size:33 final size:33
Alignment explanation
Indices: 536838--536904 Score: 89
Period size: 33 Copynumber: 2.0 Consensus size: 33
536828 AAAATTTCCA
*** *
536838 AATGTATCGATACAAAGATCCATGTATTGATAC
1 AATGTATCGATACAAAGAAAAATGTATCGATAC
*
536871 AATGTATCGATACACAGAAAAATGTATCGATAC
1 AATGTATCGATACAAAGAAAAATGTATCGATAC
536904 A
1 A
536905 TTTCCTTGGC
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
33 29 1.00
ACGTcount: A:0.43, C:0.15, G:0.15, T:0.27
Consensus pattern (33 bp):
AATGTATCGATACAAAGAAAAATGTATCGATAC
Found at i:536948 original size:19 final size:18
Alignment explanation
Indices: 536924--536991 Score: 83
Period size: 19 Copynumber: 3.9 Consensus size: 18
536914 CAGTAGCTAA
536924 TTATGTATCGATACAATAC
1 TTATGTATCGATACAA-AC
536943 TTATGTATCGATAC--A-
1 TTATGTATCGATACAAAC
536958 -T-TGTATCGATACAAAAC
1 TTATGTATCGATAC-AAAC
536975 TTATGTATCGATACAAA
1 TTATGTATCGATACAAA
536992 TTGTTGAATT
Statistics
Matches: 43, Mismatches: 0, Indels: 13
0.77 0.00 0.23
Matches are distributed among these distances:
13 11 0.26
14 1 0.02
16 2 0.05
18 4 0.09
19 25 0.58
ACGTcount: A:0.38, C:0.15, G:0.12, T:0.35
Consensus pattern (18 bp):
TTATGTATCGATACAAAC
Found at i:536964 original size:13 final size:13
Alignment explanation
Indices: 536946--536970 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
536936 ACAATACTTA
536946 TGTATCGATACAT
1 TGTATCGATACAT
536959 TGTATCGATACA
1 TGTATCGATACA
536971 AAACTTATGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:536968 original size:32 final size:32
Alignment explanation
Indices: 536927--536989 Score: 117
Period size: 32 Copynumber: 2.0 Consensus size: 32
536917 TAGCTAATTA
*
536927 TGTATCGATACAATACTTATGTATCGATACAT
1 TGTATCGATACAAAACTTATGTATCGATACAT
536959 TGTATCGATACAAAACTTATGTATCGATACA
1 TGTATCGATACAAAACTTATGTATCGATACA
536990 AATTGTTGAA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.37, C:0.16, G:0.13, T:0.35
Consensus pattern (32 bp):
TGTATCGATACAAAACTTATGTATCGATACAT
Found at i:537053 original size:21 final size:21
Alignment explanation
Indices: 537027--537103 Score: 102
Period size: 21 Copynumber: 3.7 Consensus size: 21
537017 GTTGGGACCC
**
537027 TGTATCGATACATTTGTA-GGA
1 TGTATCGATACA-TTGTACAAA
**
537048 TGTATCGATACATTCCACAAA
1 TGTATCGATACATTGTACAAA
537069 TGTATCGATACATTGTACAAA
1 TGTATCGATACATTGTACAAA
537090 TGTATCGATACATT
1 TGTATCGATACATT
537104 TAAATTTTTT
Statistics
Matches: 49, Mismatches: 6, Indels: 2
0.86 0.11 0.04
Matches are distributed among these distances:
20 3 0.06
21 46 0.94
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.35
Consensus pattern (21 bp):
TGTATCGATACATTGTACAAA
Found at i:537138 original size:17 final size:17
Alignment explanation
Indices: 537102--537137 Score: 65
Period size: 16 Copynumber: 2.2 Consensus size: 17
537092 TATCGATACA
537102 TTTAAATTTTTTTTTTT
1 TTTAAATTTTTTTTTTT
537119 TTT-AATTTTTTTTTTT
1 TTTAAATTTTTTTTTTT
537135 TTT
1 TTT
537138 TCAAACACTT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
16 16 0.84
17 3 0.16
ACGTcount: A:0.14, C:0.00, G:0.00, T:0.86
Consensus pattern (17 bp):
TTTAAATTTTTTTTTTT
Found at i:537784 original size:55 final size:55
Alignment explanation
Indices: 537700--538282 Score: 853
Period size: 55 Copynumber: 10.6 Consensus size: 55
537690 ATAAATTGTA
* * * * * *
537700 TCCTGCTCATTGAGGAGTAAAAAGTGCCACCAACTCGTGTGGGCTTTGAA-AGGCG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTT-AAGAGGTG
* *
537755 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCCACTTGTGTGGGCTTTGAA-AAGTG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTT-AAGAGGTG
* *
537810 TCCTGCTCTTTGGGGAATGAAAGGTGCCACCAACTTGTGTGGGCTTTAAGAGGTG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAGAGGTG
*
537865 TCCTGCTCTTTGAGGACTGGAAA-ATGCCACCAACTTGTGTGGGCTTTGAA-AGGTG
1 TCCTGCTCTTTGAGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTT-AAGAGGTG
* *
537920 TCCTGTTCTTTGAGGACTGGAAA-ATGCCACCAACTTGTGTGGGCTTTGAA-AGGTG
1 TCCTGCTCTTTGAGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTT-AAGAGGTG
537975 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAGAGGTG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAGAGGTG
*
538030 TCCTGCTCTTTGGGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAGAGGTG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAGAGGTG
538085 TCCTGCTCTTTGAGGACTGGACAA--TGCCACCAACTTGTGTGGGCTTTGAA-AGGTG
1 TCCTGCTCTTTGAGGACT-GA-AAGGTGCCACCAACTTGTGTGGGCTTT-AAGAGGTG
538140 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAGAGGTG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAGAGGTG
*
538195 TCCTGCTCTTTGGGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAGAGGTG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAGAGGTG
* *
538250 TCCTGCTCGTTGAGGACTGGAAA-ATGCCACCAA
1 TCCTGCTCTTTGAGGACT-GAAAGGTGCCACCAA
538283 TATTTTCAGG
Statistics
Matches: 492, Mismatches: 24, Indels: 24
0.91 0.04 0.04
Matches are distributed among these distances:
53 2 0.00
54 12 0.02
55 462 0.94
56 14 0.03
57 2 0.00
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.28
Consensus pattern (55 bp):
TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAGAGGTG
Found at i:539223 original size:322 final size:317
Alignment explanation
Indices: 538652--539258 Score: 810
Period size: 322 Copynumber: 1.9 Consensus size: 317
538642 ATACATGACA
* *
538652 TTGACGCTTTGGCGTCGCAAGAAAAGCATTTTTTTCAGCCATTTTTGATAGAATCAAAGTTTGTC
1 TTGACGCTTTGGCGTCACAAGAAAAGCATTTCTTTCAGCCATTTTTGATAGAATCAAAGTTTGTC
* * * * * *
538717 TCTTAAATAAGAAAAACAAGAAGAGTCATACTGATCCCTATTATTTTCAGGATTAGGCACCATAA
66 CCTTAAATAAGAAAAACAAGAAGAGTCAGACTAATCCCCATTATTTTCAAGAATAGGCACCATAA
* *
538782 ACTTAGTCTTCACATAAGGATACACGATACTGGCGCTTTGGCTTTACAAGAAAGGCGTTTTTCCC
131 ACTTAGTCTTCACATAAGGATACACGATACTGACGCTTTGGCTTTACAAGAAAGGCGTTTTTCCA
* * * *
538847 ACCTATTTCTATAAAGTCTAAGTTCGTGCCTCAATTGGGACAAACATAGATTCTAGTAATGATAT
196 ACCAATTTCTATAAAGTCTAACTTCGTACCTCAATTGGGAAAAACATAGATTCTAGTAATGATAT
*
538912 TCATTCATTTTCTGATTAGGCACTACAAATACATTCTCCTTATTAGGATACAGGATG
261 TCACTCATTTTCTGATTAGGCACTACAAATACATTCTCCTTATTAGGATACAGGATG
* *
538969 TTGACGCTTTGGGGTCACAAGAAAAGCATTTCTTTCA-CTCGTTTTTGATAGAATCAAAGTTTGT
1 TTGACGCTTTGGCGTCACAAGAAAAGCATTTCTTTCAGC-CATTTTTGATAGAATCAAAGTTTGT
* * * *
539033 CCCTTAAATAAGACAAACATGAATAGTCAGACTAATCCCCATTCTTTTCAACAATAGAATAGGCA
65 CCCTTAAATAAGAAAAACAAGAAGAGTCAGACTAATCCCCATTATTTT---C-A-AGAATAGGCA
* * *
539098 CCA-ACAACTTAGTTTTCTA-ATAAGGATACACGATATTGACGCTTTGG-TTTCATAAGAAAGGC
125 CCATA-AACTTAGTCTTC-ACATAAGGATACACGATACTGACGCTTTGGCTTT-ACAAGAAAGGC
* * * * *
539160 -TTTCTTCCAATCAATTTTTGTAAAGTCTAACTTCGTATCTCAATTGGGAAAAACATGGATTCTA
187 GTTT-TTCCAACCAATTTCTATAAAGTCTAACTTCGTACCTCAATTGGGAAAAACATAGATTCTA
* *
539224 GTAATGATCTTCACTCATTTTGTGATTAGGCACTA
251 GTAATGATATTCACTCATTTTCTGATTAGGCACTA
539259 TAAACATACT
Statistics
Matches: 249, Mismatches: 31, Indels: 15
0.84 0.11 0.05
Matches are distributed among these distances:
316 1 0.00
317 98 0.39
320 1 0.00
321 8 0.03
322 140 0.56
323 1 0.00
ACGTcount: A:0.32, C:0.18, G:0.16, T:0.33
Consensus pattern (317 bp):
TTGACGCTTTGGCGTCACAAGAAAAGCATTTCTTTCAGCCATTTTTGATAGAATCAAAGTTTGTC
CCTTAAATAAGAAAAACAAGAAGAGTCAGACTAATCCCCATTATTTTCAAGAATAGGCACCATAA
ACTTAGTCTTCACATAAGGATACACGATACTGACGCTTTGGCTTTACAAGAAAGGCGTTTTTCCA
ACCAATTTCTATAAAGTCTAACTTCGTACCTCAATTGGGAAAAACATAGATTCTAGTAATGATAT
TCACTCATTTTCTGATTAGGCACTACAAATACATTCTCCTTATTAGGATACAGGATG
Found at i:539374 original size:322 final size:322
Alignment explanation
Indices: 538770--539374 Score: 666
Period size: 322 Copynumber: 1.9 Consensus size: 322
538760 TTTTCAGGAT
*
538770 TAGGCACCATAAACTTAGTCTTCACATAAGGATACACGATACTGGCGCTTTGGCTTTACAAGAAA
1 TAGGCACCATAAACTTAGTCTTCACATAAGGATACACGATACTGACGCTTTGGCTTTACAAGAAA
* * * * *
538835 GGCGTTTTTCCCACCTATTTCTATAAAGTCTAAGTTCGTGCCTCAATTGGGACAAACATAGATTC
66 GGCGTTTTTCCAACCAATTTCTATAAAGTCTAACTTCGTACCTCAATTGGGAAAAACATAGATTC
* * * *
538900 TAGTAATGATATTCATTCATTTTCTGATTAGGCACTACAAATACATTCTCCTTATTAGGATACAG
131 TAGTAATGATATTCACTCATTTTCTGATTAGGCACTACAAATACATACTCCTTATTAGGATAAAA
* * * * * * * *
538965 GATGTTGACGCTTTGGGGTCACAAGAAAAGCATTTCTTTCACTCGTTTTTGATAGAATCAAAGTT
196 GATATTGACGATTTGCGGTCACAAGAAAAGCATTTCTTTCACTCATCTTTCATAAAATAAAAGTT
** *
539030 TGTCCCTTAAATAAGACAAACATGAATAGTCAGACTAATCCCCATTCTTTTCAACAATAGAA
261 CATCCCTTAAAAAAGACAAACATGAATAGTCAGACTAATCCCCATTCTTTTCAACAATAGAA
* * *
539092 TAGGCACCA-ACAACTTAGTTTTCTA-ATAAGGATACACGATATTGACGCTTTGG-TTTCATAAG
1 TAGGCACCATA-AACTTAGTCTTC-ACATAAGGATACACGATACTGACGCTTTGGCTTT-ACAAG
* * * * *
539154 AAAGGC-TTTCTTCCAATCAATTTTTGTAAAGTCTAACTTCGTATCTCAATTGGGAAAAACATGG
63 AAAGGCGTTT-TTCCAACCAATTTCTATAAAGTCTAACTTCGTACCTCAATTGGGAAAAACATAG
* * * * * *
539218 ATTCTAGTAATGATCTTCACTCATTTTGTGATTAGGCACTA-TAA-ACATACTCTTTGCTTTGGG
127 ATTCTAGTAATGATATTCACTCATTTTCTGATTAGGCACTACAAATACATACTCCTT--ATTAGG
* ** * ** * * * *
539281 ATAAAAGATATTGACGATTTTCTTTTACGTGAAAATCTTTTCTTTGCCCT-ATCTTTCTTAAAAT
190 ATAAAAGATATTGACGATTTGCGGTCACAAGAAAAGCATTTCTTT-CACTCATCTTTCATAAAAT
** *
539345 AAAAGTTCATCTTTTAAAAAAGGCAAACAT
254 AAAAGTTCATCCCTTAAAAAAGACAAACAT
539375 TGATTCTCGT
Statistics
Matches: 228, Mismatches: 48, Indels: 14
0.79 0.17 0.05
Matches are distributed among these distances:
320 9 0.04
321 9 0.04
322 206 0.90
323 4 0.02
ACGTcount: A:0.32, C:0.18, G:0.15, T:0.35
Consensus pattern (322 bp):
TAGGCACCATAAACTTAGTCTTCACATAAGGATACACGATACTGACGCTTTGGCTTTACAAGAAA
GGCGTTTTTCCAACCAATTTCTATAAAGTCTAACTTCGTACCTCAATTGGGAAAAACATAGATTC
TAGTAATGATATTCACTCATTTTCTGATTAGGCACTACAAATACATACTCCTTATTAGGATAAAA
GATATTGACGATTTGCGGTCACAAGAAAAGCATTTCTTTCACTCATCTTTCATAAAATAAAAGTT
CATCCCTTAAAAAAGACAAACATGAATAGTCAGACTAATCCCCATTCTTTTCAACAATAGAA
Found at i:539901 original size:476 final size:477
Alignment explanation
Indices: 538953--541795 Score: 2966
Period size: 476 Copynumber: 5.9 Consensus size: 477
538943 CATTCTCCTT
* ** * * *
538953 ATTAGGATACAGGATGTTGACGCTTTGGGGTCACAAGAAAAGCATTTCTTTC-ACTCGTTTTTGA
1 ATTAGGATACATGACATTGACGCTTTAGTGTCGCAAGAAAAGCATTTCTTTCAACTCGTTTTTGA
* *
539017 TAGAATCAAAGTTTGTCCCTTAAATAAGACAAACATGAATAGTCAGACTAATCCCCATTCTTTTC
66 TAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTT-
* * * * *
539082 AACAATAGAATAGGCACCA-ACAACTTAGTTTTCTAATAAGGATACACGATATTGACGCTTTGGT
130 --C--TGGATTAGGCACCATA-AACTTAGTCTCCTAATAAGGATACACGATATTGATGCTTTGGT
* * * * ** * *
539146 TTCATAAGAAAGGCTTTCTTCCAATCAATTTTTGTAAAGTCTAACTTCGTATCTCAATTGGGAAA
190 TTCATAAGAAAGGCTTTCTTCCCACCAATTTTTATAAAGTCTAAGTTCGTGCCTCAATTGTGACA
* * *
539211 AACATGGATTCTAGTAATGATCTTCACTCATTTTGTGATTAGGCACTATAAACATACTCT-TTGC
255 AACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACATATTCTCCT-C
* * * * * *
539275 TTTGGGATAAAAGATATTGACGATTTTCTTTTACGTGAAAATCTTTTCTTTGCCCTATCTTT-CT
319 ATTAGGATAAATGATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTAT-TTTCCT
* ** * * * *
539339 TAAAATAAAAGTTCATCTTTTAAAAAAGGCAAACATTGATTCTCGTAATAGTCTCCATTCTTTTC
383 TAAAATTAAAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCGTAACAGTCTCCATTTTTTTC
**
539404 ATGACCGGGAACCAAAAAACACATTCCTTTC
448 ATGATTGGGAACC-AAAAACACATTCCTTTC
* * * * *
539435 ATTAGGATAAATGACATTGATGCTTTAGTGTCACAA-AAAGGCATTTCTTTCAACT-GTTTTTTA
1 ATTAGGATACATGACATTGACGCTTTAGTGTCGCAAGAAAAGCATTTCTTTCAACTCGTTTTTGA
** * * *
539498 TAGAATCAAAGTTTGTCAGTTAAATAAGACAAACATGAATAGTCATACAAATCCCCAATATTTTC
66 TAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTC
* * * * * * *
539563 TGGATTAGACACCAAAAACTTAGTCTCCTAATAGGGATACATGATATTGAAGCATTGGTTTTGA-
131 TGGATTAGGCACCATAAACTTAGTCTCCTAATAAGGATACACGATATTGATGCTTTGG-TTTCAT
* * *
539627 AAGAAAGGCTTTCTTCCCACCAATTTTTATAAAGCCTAAGTTCGTGCCTCAACTATGACAAACAT
195 AAGAAAGGCTTTCTTCCCACCAATTTTTATAAAGTCTAAGTTCGTGCCTCAATTGTGACAAACAT
539692 GGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACATATTCTCCTCATTAGG
260 GGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACATATTCTCCTCATTAGG
* * * *
539757 ATAAATGATATTGATGTTTTTTTTTTTGCATGGAAATCTTTT-TGTTGCCCAATTTTCCTTAAAA
325 ATAAATGATATTGATG-ATTTTCTTTTGCATGAAAATCTTTTCT-TTGCCCTATTTTCCTTAAAA
* *
539821 TTAAGGTTTATCCCTTAAATAAGGCAAGCATTGATTCTCGTAACAGTCTCCATTTTTTTCATGAT
388 TTAAAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCGTAACAGTCTCCATTTTTTTCATGAT
*
539886 TGGGAACCGAAAACACATT-CTTCTC
453 TGGGAACCAAAAACACATTCCTT-TC
* * * * * *
539911 ATTAGGATACAAGGCATTGACG-ATTGGGGTCGCAAGAAAAGCATTTCTTTCAGC-CGTTTTTGA
1 ATTAGGATACATGACATTGACGCTTTAGTGTCGCAAGAAAAGCATTTCTTTCAACTCGTTTTTGA
* *
539974 TAGAATCAAAGTTTGTCTCTTAAATAAGACAAGCATGAATAGTCATACTAATCCCCATTTTTTTC
66 TAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTT-
* * * * *
540039 CAGAGTAGACAAGCATGAATA-GCACCAGAAACTTGGTTTTCTAATAAGGATACATGATATTGAT
130 C----T-G----G-AT---TAGGCACCATAAACTTAGTCTCCTAATAAGGATACACGATATTGAT
* * **
540103 GCTTTGGTTTCGTAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTATCTCAA
182 GCTTTGGTTTCATAAGAAAGGCTTTCTTCCCACCAATTTTTATAAAGTCTAAGTTCGTGCCTCAA
** * * * * * * **
540168 TTAAGACAAATATGGACTCTGGTAATGATCTTCACTCATTTTGTGATGAGGCAGTACCAACATAT
247 TTGTGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACATAT
* * ** * * *
540233 TCTCCTTATTAGGATAAACT-ATATTGGTGATTCCCTTTTGCATCAAAATCTTTTCTTTGCCTTG
312 TCTCCTCATTAGGATAAA-TGATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTA
** * *
540297 TTTTTTTTAAAATTAAAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCATAACAGTCACCA-
376 TTTTCCTTAAAATTAAAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCGTAACAGTCTCCAT
* * * *
540361 TTATTTGATGATTGGGAACCCAAAACATATTCCTTTC
441 TTTTTTCATGATTGGGAACCAAAAACACATTCCTTTC
* * * * * ** ** *
540398 ATTAGGAGACATGACATTGACACATTAATGTTGCAAGAAAAGCATTTCTTTCTGCTATTTTTTAT
1 ATTAGGATACATGACATTGACGCTTTAGTGTCGCAAGAAAAGCATTTCTTTCAACTCGTTTTT-G
* * * *
540463 ATAGAATCAAAGTTTGTCTCTCAAATAAGACAAACCTGAATAGCCATACTAATCCCTATTCTTTT
65 ATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTT
* * * * * * * *
540528 CAGTATTAGGCACCATAAACTTAGTCTTCTACTAAGGATACACGATATTTAAGCCTTGGCTTCAT
130 CTGGATTAGGCACCATAAACTTAGTCTCCTAATAAGGATACACGATATTGATGCTTTGGTTTCAT
* *
540593 AAGAAATGCTTTCTTCCCACCAATTTTTATAAAG-CATAAGTTCGTGCCTCAAATGTGACAAACA
195 AAGAAAGGCTTTCTTCCCACCAATTTTTATAAAGTC-TAAGTTCGTGCCTCAATTGTGACAAACA
* * * * *
540657 TGGATTCTAGTAATAATCTTCTTTCATTTTGTGACTAGGCACGATAAACATATTCTCCTCATTAA
259 TGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACATATTCTCCTCATTAG
* * ** * **** **
540722 GATAAATGATATTGAAGTTTTTCTTTTGCGCGAAAAATCTTTTCGTTATTGTATTTT-CTTAATT
324 GATAAATGATATTGATGATTTTCTTTTGCATG-AAAATCTTTTCTTTGCCCTATTTTCCTTAAAA
** * * * *
540786 TTAAAGTTCAAGCCTTAAATAAGGCAAGCATTGATTCTTGTAACAATCTGCATTTTTTTCAAGAT
388 TTAAAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCGTAACAGTCTCCATTTTTTTCATGAT
* * *
540851 TTGGCACCAAAAACGCATTCCTTTC
453 TGGGAACCAAAAACACATTCCTTTC
* * * * * *
540876 ATTAGGATACATGACATTGATGCTTTTGTGCCGCAAGAAAAGCATTTATTTGAA-TCATTTTTGA
1 ATTAGGATACATGACATTGACGCTTTAGTGTCGCAAGAAAAGCATTTCTTTCAACTCGTTTTTGA
* * * ** *
540940 TTGAATCAAAGTTTGTCTTTTAAATAAGACAAACATGAATATTCATACTAATCCTTAGTCTTTT-
66 TAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTC
* * * ** *
541004 TAGGATTAGGCACCATAAACTTAGTCTTCC-AATAAGGATGCACGATAATGATGCTTCGACTTCG
131 T-GGATTAGGCACCATAAACTTAGTC-TCCTAATAAGGATACACGATATTGATGCTTTGGTTTCA
* * * * * * * * * **
541068 CAAGAAAGGCTTTTTTCCCACC-GTTTTCGATAAAGACTATGTTCATGCCTCAAATGGGGTAAAC
194 TAAGAAAGGCTTTCTTCCCACCAATTTT-TATAAAGTCTAAGTTCGTGCCTCAATTGTGACAAAC
* * * * * * *
541132 ATGGATTCTAGCAATGATCTTCATTCTTTTTTTGATTAGGTACTACAAACACATTCTCCTTATTA
258 ATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACATATTCTCCTCATTA
* * * *
541197 GGATAAATGACATTGATGATTTTCTTTTGCATGAAAGTTTTTTCTTTGCCCTATTTTCCTAAAAA
323 GGATAAATGATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAA
* * *
541262 TTAAAGTTCATTCCTTAAATAAGGCAATCATTGATTCTCGTAACAGTCTCCATTATTTTCATGAT
388 TTAAAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCGTAACAGTCTCCATTTTTTTCATGAT
* *
541327 TAGG-AGCAAGAAACACATTCCTTTC
453 TGGGAACCAA-AAACACATTCCTTTC
*
541352 ATTAGGATACATGACATTGACGCTTTGGTGTCGCAAGAAAAGCATTTCTTTCAAC-CGTTTTTGA
1 ATTAGGATACATGACATTGACGCTTTAGTGTCGCAAGAAAAGCATTTCTTTCAACTCGTTTTTGA
* * *
541416 TTGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATATTCATACTAATCCCCATTATTTTC
66 TAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTC
* * * * * * * * * * *
541481 AGGAATAAGTACCGTAAACTTACTCTTCCT-ACAAGGA-ATAGGATATTGATGCGTTAGTTTCAT
131 TGGATTAGGCACCATAAACTTAGTC-TCCTAATAAGGATACACGATATTGATGCTTTGGTTTCAT
* * * * * *
541544 AAGAAAGGCTTTCTTCCCTCAAATTTTGT-TAAAGTTTATGTTCGTGCCTTAATTGTGATAAACA
195 AAGAAAGGCTTTCTTCCCACCAATTTT-TATAAAGTCTAAGTTCGTGCCTCAATTGTGACAAACA
* ** ** *** * * *
541608 TGGATTTTAGTAAAAATCTTCATTCGCTTTGTGATTACTTACTGTAAACACATTCTCCTCCTTAG
259 TGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACATATTCTCCTCATTAG
* * * * *
541673 GATAAAAGATATT-ATTGATTTTCTTTTGCTTGAAAATCTTTTCTTTGCCTTATTTCCCCTAAAA
324 GATAAATGATATTGA-TGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAA
* ** * *
541737 TCAAAGTTCATCCCTTAAATAAGGTGAGCATTGATTCTCGTAACAATCTCCATTCTTTT
388 TTAAAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCGTAACAGTCTCCATTTTTTT
541796 GATAGAATCA
Statistics
Matches: 1954, Mismatches: 360, Indels: 101
0.81 0.15 0.04
Matches are distributed among these distances:
474 1 0.00
475 255 0.13
476 752 0.38
477 336 0.17
478 90 0.05
479 2 0.00
481 80 0.04
482 33 0.02
484 1 0.00
486 1 0.00
487 49 0.03
488 115 0.06
489 177 0.09
490 62 0.03
ACGTcount: A:0.31, C:0.18, G:0.14, T:0.36
Consensus pattern (477 bp):
ATTAGGATACATGACATTGACGCTTTAGTGTCGCAAGAAAAGCATTTCTTTCAACTCGTTTTTGA
TAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTC
TGGATTAGGCACCATAAACTTAGTCTCCTAATAAGGATACACGATATTGATGCTTTGGTTTCATA
AGAAAGGCTTTCTTCCCACCAATTTTTATAAAGTCTAAGTTCGTGCCTCAATTGTGACAAACATG
GATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACATATTCTCCTCATTAGGA
TAAATGATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATTA
AAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCGTAACAGTCTCCATTTTTTTCATGATTGG
GAACCAAAAACACATTCCTTTC
Found at i:542127 original size:382 final size:382
Alignment explanation
Indices: 541410--542177 Score: 905
Period size: 382 Copynumber: 2.0 Consensus size: 382
541400 TTTCAACCGT
* * *
541410 TTTTGATTGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATATTCATACTAATCCCCATT
1 TTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATAAATAGTCATACTAATCCCCATT
* * * * * * *
541475 ATTTTCAGGAATAAGTACCGTAAACTTACTCTTCCTACAAGGAATAGGATATTGATGCGTTAGTT
66 ATTTTCAAGAATAAGCACCATAAACTTACTCTTCCTACAAGGAACACGATAATGAAGCGTTAGTT
* *** * * * * * *
541540 TCATAAGAAAGGCTTTCTTCCCTCAAATTTTGTTAAAGTTTATGTTCGTGCCTTAATTGTGATAA
131 TCATAAGAAAGGCTTTCTTCCCTCAAATTTTGGTAAACCCTAAGCTCGTCCCTCAAATGTGACAA
* * ** * *
541605 ACATGGATTTTAGTAAAAATCTTCATTCGCTTTGTGATTACTTACTGTAAACACATTCTCCTCCT
196 ACATGGATTCTAGTAAAAATCTTCATTCACTTTGTGATTACGCACTATAAACACATTCTCCTCAT
* * * *
541670 TAGGATAAAAGATATTATTGATTTTCTTTTGCTTGAAAATCTTTTCTTTGCCTTATTTCCCCTAA
261 TAGGATAAAAGATATTATAGATTTTCTTTTGCGTGAAAATCTTTTCGTTGCCGTATTTCCCCTAA
**
541735 AATCAAAGTTCATCCCTTAAATAAGGTGAGCATTGATTCTCGTAACAATCTCCATTC
326 AATCAAAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCGTAACAATCTCCATTC
* * *
541792 TTTTGATAGAATCAAGGTTTGTCTCTTAAATAAGACAAACCTAAATAGTCATACTAATCCTCATT
1 TTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATAAATAGTCATACTAATCCCCATT
* ** * * * *
541857 CTTTTCAAGTTTAGGCACCATAAACTTAGTCTT-CTAATAAGGATACACGATAATGAAGCGTTGG
66 ATTTTCAAGAATAAGCACCATAAACTTACTCTTCCT-ACAAGGA-ACACGATAATGAAGCGTTAG
* *
541921 TTTCATCAGAAAGGCTTTCTT-CCTACCAATTTTGGTAAACCCTAAGCTCGTCCCTCAAATGTGA
129 TTTCATAAGAAAGGCTTTCTTCCCT-CAAATTTTGGTAAACCCTAAGCTCGTCCCTCAAATGTGA
** * * * *
541985 CAAACATGGATTCTAGTAATGATTTTCATTCATTTTGTGATTAGGCACTATAAACATATTCTCCT
193 CAAACATGGATTCTAGTAAAAATCTTCATTCACTTTGTGATTACGCACTATAAACACATTCTCCT
* * * * *
542050 TATTAGGATACATGATATTGA-AG-TTTTTTTTTGCGTGAAAATCTTTTCGTTGCCGTATTTTCC
258 CATTAGGATAAAAGATATT-ATAGATTTTCTTTTGCGTGAAAATCTTTTCGTTGCCGTATTTCCC
* * * * * * * *
542113 TTAAAGTTAAAGTTCATGCCTTAAATAAGGCAAGCATTGGTTCTTGTAACAGTCTCCATTT
322 CTAAAATCAAAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCGTAACAATCTCCATTC
542174 TTTT
1 TTTT
542178 TCATGATTTG
Statistics
Matches: 319, Mismatches: 63, Indels: 8
0.82 0.16 0.02
Matches are distributed among these distances:
381 2 0.01
382 183 0.57
383 133 0.42
384 1 0.00
ACGTcount: A:0.30, C:0.18, G:0.14, T:0.38
Consensus pattern (382 bp):
TTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATAAATAGTCATACTAATCCCCATT
ATTTTCAAGAATAAGCACCATAAACTTACTCTTCCTACAAGGAACACGATAATGAAGCGTTAGTT
TCATAAGAAAGGCTTTCTTCCCTCAAATTTTGGTAAACCCTAAGCTCGTCCCTCAAATGTGACAA
ACATGGATTCTAGTAAAAATCTTCATTCACTTTGTGATTACGCACTATAAACACATTCTCCTCAT
TAGGATAAAAGATATTATAGATTTTCTTTTGCGTGAAAATCTTTTCGTTGCCGTATTTCCCCTAA
AATCAAAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCGTAACAATCTCCATTC
Found at i:542663 original size:13 final size:13
Alignment explanation
Indices: 542645--542674 Score: 60
Period size: 13 Copynumber: 2.3 Consensus size: 13
542635 ATACATGGTT
542645 CATTGTATCGATA
1 CATTGTATCGATA
542658 CATTGTATCGATA
1 CATTGTATCGATA
542671 CATT
1 CATT
542675 CTGGGTTTAC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.30, C:0.17, G:0.13, T:0.40
Consensus pattern (13 bp):
CATTGTATCGATA
Found at i:542719 original size:20 final size:20
Alignment explanation
Indices: 542694--542743 Score: 57
Period size: 20 Copynumber: 2.5 Consensus size: 20
542684 CCTAGATGTG
*
542694 TCGATACATT-TTGCATTATA
1 TCGATACATTGCT-CATTATA
* *
542714 TCGATATATTGCTCATTGTA
1 TCGATACATTGCTCATTATA
542734 TCGATACATT
1 TCGATACATT
542744 CAGGCATTTT
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
20 24 0.96
21 1 0.04
ACGTcount: A:0.28, C:0.16, G:0.12, T:0.44
Consensus pattern (20 bp):
TCGATACATTGCTCATTATA
Found at i:545157 original size:50 final size:51
Alignment explanation
Indices: 545030--545169 Score: 165
Period size: 50 Copynumber: 2.7 Consensus size: 51
545020 TCCCGGTTCC
** * * *
545030 ATTTCCAAAACATCAATTTTTCTTAATCGGGGATACTCCAACTTTCTATTTT
1 ATTTCCAAAACATCAATTTTTCACAAT-AGGGATACTCCAACTTCCGATTTT
* * * *
545082 ATTTCTAAAGCATCGATTTTCCACAATAGGGATACTCCAAC-TCCGATTTT
1 ATTTCCAAAACATCAATTTTTCACAATAGGGATACTCCAACTTCCGATTTT
*
545132 ATTTCCAAAACACCAATTTTTCACAATTAGGGATACTC
1 ATTTCCAAAACATCAATTTTTCACAA-TAGGGATACTC
545170 TAACCCCATT
Statistics
Matches: 73, Mismatches: 14, Indels: 3
0.81 0.16 0.03
Matches are distributed among these distances:
50 28 0.38
51 24 0.33
52 21 0.29
ACGTcount: A:0.31, C:0.23, G:0.09, T:0.36
Consensus pattern (51 bp):
ATTTCCAAAACATCAATTTTTCACAATAGGGATACTCCAACTTCCGATTTT
Found at i:545201 original size:79 final size:78
Alignment explanation
Indices: 545110--545299 Score: 182
Period size: 79 Copynumber: 2.4 Consensus size: 78
545100 TTCCACAATA
* * *
545110 GGGATACTCCAACTCCGATTTTATTTCCAAAACACCAATTTTTCACAATTAGGGATACTCTAACC
1 GGGATACTCCAAC-CCGATTTTATTTCCAAAACACCAATTTCTCACAATCAGGGATACTCCAACC
545175 CCATTATTTCTGAG
65 CCATTATTTCTGAG
* ** * * *** * * *
545189 GGGATACTCCAACCCTGACTTTAAATCTAAAATATTGATTTCTCATAATCGGGGATACTCCAACT
1 GGGATACTCCAACCC-GATTTTATTTCCAAAACACCAATTTCTCACAATCAGGGATACTCCAACC
* *
545254 CCATTATTTTTGCG
65 CCATTATTTCTGAG
* * *
545268 GGGATAATCCAACCCCAATTTTATTTTCAAAA
1 GGGATACTCCAA-CCCGATTTTATTTCCAAAA
545300 TACTGATTTT
Statistics
Matches: 86, Mismatches: 23, Indels: 4
0.76 0.20 0.04
Matches are distributed among these distances:
78 2 0.02
79 81 0.94
80 3 0.03
ACGTcount: A:0.31, C:0.24, G:0.12, T:0.33
Consensus pattern (78 bp):
GGGATACTCCAACCCGATTTTATTTCCAAAACACCAATTTCTCACAATCAGGGATACTCCAACCC
CATTATTTCTGAG
Found at i:545300 original size:79 final size:79
Alignment explanation
Indices: 545160--545327 Score: 187
Period size: 79 Copynumber: 2.1 Consensus size: 79
545150 TTTCACAATT
* * ** *
545160 AGGGATACTCTAACCCCATTATTTCTGAGGGGATACTCCAACCCTGACTTTAAATCTAAAATATT
1 AGGGATACTCCAACCCCATTATTTCTGAGGGGATAATCCAACCCCAACTTTAAATCTAAAATACT
545225 GA-TTTCTCATAATC
66 GATTTTCT-ATAATC
* * * * * * *
545239 GGGGATACTCCAACTCCATTATTTTTGCGGGGATAATCCAACCCCAA-TTTTATTTTCAAAATAC
1 AGGGATACTCCAACCCCATTATTTCTGAGGGGATAATCCAACCCCAACTTTAAATCT-AAAATAC
545303 TGATTTTCTATAATC
65 TGATTTTCTATAATC
*
545318 AAGGATACTC
1 AGGGATACTC
545328 TAGCCCTGTT
Statistics
Matches: 73, Mismatches: 14, Indels: 4
0.80 0.15 0.04
Matches are distributed among these distances:
78 6 0.08
79 62 0.85
80 5 0.07
ACGTcount: A:0.31, C:0.22, G:0.13, T:0.34
Consensus pattern (79 bp):
AGGGATACTCCAACCCCATTATTTCTGAGGGGATAATCCAACCCCAACTTTAAATCTAAAATACT
GATTTTCTATAATC
Found at i:548166 original size:475 final size:475
Alignment explanation
Indices: 547275--548394 Score: 1557
Period size: 475 Copynumber: 2.4 Consensus size: 475
547265 GTAATGATCT
* * * * *
547275 TTATTAGGATAAATGATATTGAAGTTTTTTTTTTGCATGGAAATCTTTTCATTGCCTATTTTCCT
1 TTATTAGGATAAATGATATTGATGATATTTTTTTGCATGGAAATCTTTTCTTTCCCTATTTTCCT
* * *
547340 TAAAATTAAAGTTCATCCCTTAATTAAGGCAAGTATTGATTCTCGTAATAGTCTCCATTCTTTTC
66 TAAAATTAAAGTTCATCCCTTAAATAAGGCAAGTATTGATTCTCATAACAGTCTCCATTCTTTTC
* *
547405 ATGGTTGGGAACAAGAAACACATTCCTTTCTTTAGGATACATGACATTAACGCTTTGGTGTCGCA
131 ATGATTGGGAACAAGAAACACATTCCTTTCTTTAGGATACATGACATTAACGCTTTGCTGTCGCA
* *
547470 AGAAAAGCATTTCTTTCAATCATTTTTAATTGAATCAAAGTTTGTCACTTAAATAAGACAAACAT
196 AGAAAAGCATTTCTTTCAACCATTCTTAATTGAATCAAAGTTTGTCACTTAAATAAGACAAACAT
* * *
547535 GAATAATTATACTGATCCCCATTCTTTTCAAGACAAGGCACCATAAACTTAGTTTTCTAATAAGG
261 GAATAATCACACTAATCCCCATTCTTTTCAAGACAAGGCACCATAAACTTAGTTTTCTAATAAGG
* * * * *
547600 ATACACGATATTGGTGCTTTGGTTTCATAAGAAAGGTTTTCTTCTCACCAAATTTTATAAAGTTT
326 ATACACGATATTGATGCTTTGATTTCACAAGAAAGGTTTTCTTCCCACCAAATTTTATAAAGTCT
* *
547665 AAATTCGTGCCTTAATTGGCACAAACATGGATTCTAGAAATAATCTTCATTCATTTTGTGATT-A
391 AAATTCGTGCCTCAATTGGCACAAACATGGATTCTAGAAATAATCTTCATTCATTGTGTGATTAA
* *
547729 GACCCTGCAAACACATTCTCC
456 G-CACTACAAACACATTCTCC
* *
547750 TTATTAGGATAAATGATATTGATGATATTCTTTTGCATGGAAGTCTTTTCTTTCCCCTATTTTCC
1 TTATTAGGATAAATGATATTGATGATATTTTTTTGCATGGAAATCTTTTCTTT-CCCTATTTTCC
* * * *
547815 TTAACATTAAAGTTCATCCCTTAAATGAGGCAAGCATTGATTCCCATAACAGTCTCCATTCTTTT
65 TTAAAATTAAAGTTCATCCCTTAAATAAGGCAAGTATTGATTCTCATAACAGTCTCCATTCTTTT
* * * *
547880 CATGATTAGGAAGAAGAAACACATTCCTTTCTTT-GGATACATGACATTGACGCTTTGCTGTTGC
130 CATGATTGGGAACAAGAAACACATTCCTTTCTTTAGGATACATGACATTAACGCTTTGCTGTCGC
* * ** * *
547944 AAGAAAAGCATTTCTTTCAACCGTTCTTGATTGAATCAAAGTTTGTCTTTTAAATAAGGCAAACT
195 AAGAAAAGCATTTCTTTCAACCATTCTTAATTGAATCAAAGTTTGTCACTTAAATAAGACAAACA
* ** **
548009 TGAATAATCACACTAATCCCTATTCTTTTCAAGATTAGGTGCCATAAACTTAGTTTTCTAATAAG
260 TGAATAATCACACTAATCCCCATTCTTTTCAAGACAAGGCACCATAAACTTAGTTTTCTAATAAG
* ** * *
548074 GATACACGATGTTGATGCTTTGATTTGGCAAGAAAGGCTTTT-TTCCCACCAATTTTTTTAAAGT
325 GATACACGATATTGATGCTTTGATTTCACAAGAAAGG-TTTTCTTCCCACCAAATTTTATAAAGT
* * * *
548138 CTAAGTTTGTGCCTCAATTAGG-ACAAACATGGATTCTAGTAATGATCTTCATTCATTGTGTGAT
389 CTAAATTCGTGCCTCAATT-GGCACAAACATGGATTCTAGAAATAATCTTCATTCATTGTGTGAT
*
548202 TAAGCAGTACAAACACATTCTCC
453 TAAGCACTACAAACACATTCTCC
* *
548225 TTATTGGGATAAATGATATTAATGATATTTTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCC
1 TTATTAGGATAAATGATATTGATGATATTTTTTTGCATGGAAATCTTTTCTTT-CCCTATTTTCC
* * * ** *
548290 TTAAAATCAAAGTTCATCCCCTAAATAAAGCAAGTATAAATTCTCATAACAGTCTCAATTCTTTT
65 TTAAAATTAAAGTTCATCCCTTAAATAAGGCAAGTATTGATTCTCATAACAGTCTCCATTCTTTT
* * *
548355 GATGATTGGGAACCAA-AAACACATTCCTTTCATTACGATA
130 CATGATTGGGAA-CAAGAAACACATTCCTTTCTTTAGGATA
548395 TGAAAGCTCA
Statistics
Matches: 564, Mismatches: 75, Indels: 11
0.87 0.12 0.02
Matches are distributed among these distances:
475 451 0.80
476 113 0.20
ACGTcount: A:0.31, C:0.17, G:0.14, T:0.37
Consensus pattern (475 bp):
TTATTAGGATAAATGATATTGATGATATTTTTTTGCATGGAAATCTTTTCTTTCCCTATTTTCCT
TAAAATTAAAGTTCATCCCTTAAATAAGGCAAGTATTGATTCTCATAACAGTCTCCATTCTTTTC
ATGATTGGGAACAAGAAACACATTCCTTTCTTTAGGATACATGACATTAACGCTTTGCTGTCGCA
AGAAAAGCATTTCTTTCAACCATTCTTAATTGAATCAAAGTTTGTCACTTAAATAAGACAAACAT
GAATAATCACACTAATCCCCATTCTTTTCAAGACAAGGCACCATAAACTTAGTTTTCTAATAAGG
ATACACGATATTGATGCTTTGATTTCACAAGAAAGGTTTTCTTCCCACCAAATTTTATAAAGTCT
AAATTCGTGCCTCAATTGGCACAAACATGGATTCTAGAAATAATCTTCATTCATTGTGTGATTAA
GCACTACAAACACATTCTCC
Found at i:549267 original size:13 final size:13
Alignment explanation
Indices: 549249--549274 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
549239 TACAGTGGTC
549249 ATGTATCGATACA
1 ATGTATCGATACA
549262 ATGTATCGATACA
1 ATGTATCGATACA
549275 TCTGAAGGTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:551570 original size:13 final size:13
Alignment explanation
Indices: 551552--551586 Score: 61
Period size: 13 Copynumber: 2.7 Consensus size: 13
551542 ATAAACCCCT
*
551552 TGTATCGATACAC
1 TGTATCGATACAA
551565 TGTATCGATACAA
1 TGTATCGATACAA
551578 TGTATCGAT
1 TGTATCGAT
551587 GCTGAGAATG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 21 1.00
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.34
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:557217 original size:13 final size:13
Alignment explanation
Indices: 557199--557224 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
557189 ACATTTGGTC
557199 ATGTATCGATACA
1 ATGTATCGATACA
557212 ATGTATCGATACA
1 ATGTATCGATACA
557225 TCTTGTATGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:557218 original size:33 final size:32
Alignment explanation
Indices: 557176--557240 Score: 105
Period size: 33 Copynumber: 2.0 Consensus size: 32
557166 CCGTTACAAA
557176 ACAATGTATCGATACAT-TTGGTCATGTATCGAT
1 ACAATGTATCGATACATCTT-GT-ATGTATCGAT
557209 ACAATGTATCGATACATCTTGTATGTATCGAT
1 ACAATGTATCGATACATCTTGTATGTATCGAT
557241 TCAAACAGTT
Statistics
Matches: 31, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
32 10 0.32
33 19 0.61
34 2 0.06
ACGTcount: A:0.31, C:0.15, G:0.17, T:0.37
Consensus pattern (32 bp):
ACAATGTATCGATACATCTTGTATGTATCGAT
Found at i:562913 original size:21 final size:19
Alignment explanation
Indices: 562866--562923 Score: 80
Period size: 19 Copynumber: 2.9 Consensus size: 19
562856 TTGTATTGAT
*
562866 ACATTGTATCGATACATGT
1 ACATTGTATCGATACATGG
*
562885 TCATTGTATCGATACATGG
1 ACATTGTATCGATACATGG
562904 ACAAATTGTATCGATACATG
1 AC--ATTGTATCGATACATG
562924 AAACTGGCAG
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
19 18 0.53
21 16 0.47
ACGTcount: A:0.33, C:0.16, G:0.17, T:0.34
Consensus pattern (19 bp):
ACATTGTATCGATACATGG
Found at i:568856 original size:18 final size:18
Alignment explanation
Indices: 568805--568857 Score: 51
Period size: 18 Copynumber: 3.1 Consensus size: 18
568795 GATTTATTCC
* *
568805 TTGT-TGATTGAATGAATT
1 TTGTATGATTGAAT-TATG
568823 TTG-ATGATTG--TTATG
1 TTGTATGATTGAATTATG
568838 TTGTATGATTGAATTATG
1 TTGTATGATTGAATTATG
568856 TT
1 TT
568858 TGTTTGATAT
Statistics
Matches: 29, Mismatches: 2, Indels: 8
0.74 0.05 0.21
Matches are distributed among these distances:
15 5 0.17
16 8 0.28
18 16 0.55
ACGTcount: A:0.25, C:0.00, G:0.23, T:0.53
Consensus pattern (18 bp):
TTGTATGATTGAATTATG
Found at i:570875 original size:19 final size:19
Alignment explanation
Indices: 570851--570891 Score: 73
Period size: 19 Copynumber: 2.2 Consensus size: 19
570841 AAGTTGGAGA
*
570851 AGATAATCATTTGAGGGGG
1 AGATAATCATTTAAGGGGG
570870 AGATAATCATTTAAGGGGG
1 AGATAATCATTTAAGGGGG
570889 AGA
1 AGA
570892 ATTTTTAAAG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.37, C:0.05, G:0.34, T:0.24
Consensus pattern (19 bp):
AGATAATCATTTAAGGGGG
Found at i:571465 original size:19 final size:19
Alignment explanation
Indices: 571440--571497 Score: 71
Period size: 19 Copynumber: 2.9 Consensus size: 19
571430 TTGTATTGAT
*
571440 ACATTGTATCGATACATGT
1 ACATTGTATCGATACATGG
* *
571459 TCATTGTATCGATACAAGG
1 ACATTGTATCGATACATGG
571478 ACAAATTGTATCGATACATG
1 AC--ATTGTATCGATACATG
571498 AAACTGGCAA
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
19 17 0.53
21 15 0.47
ACGTcount: A:0.34, C:0.16, G:0.17, T:0.33
Consensus pattern (19 bp):
ACATTGTATCGATACATGG
Found at i:574259 original size:21 final size:20
Alignment explanation
Indices: 574234--574286 Score: 72
Period size: 19 Copynumber: 2.6 Consensus size: 20
574224 TACAAGCCAA
**
574234 TGTATCGATACAATTTTTTGG
1 TGTATCGATACAA-TACTTGG
574255 TGTATCGATAC-ATACTTGG
1 TGTATCGATACAATACTTGG
574274 TGTATCGATACAA
1 TGTATCGATACAA
574287 GTTTGGCTAC
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
19 16 0.55
20 2 0.07
21 11 0.38
ACGTcount: A:0.28, C:0.13, G:0.19, T:0.40
Consensus pattern (20 bp):
TGTATCGATACAATACTTGG
Found at i:574292 original size:19 final size:18
Alignment explanation
Indices: 574234--574292 Score: 64
Period size: 19 Copynumber: 3.0 Consensus size: 18
574224 TACAAGCCAA
574234 TGTATCGATACAATTTTTTGG
1 TGTATCGATACAA---TTTGG
*
574255 TGTATCGATACATACTTGG
1 TGTATCGATACA-ATTTGG
574274 TGTATCGATACAAGTTTGG
1 TGTATCGATACAA-TTTGG
574293 CTACTGCCAA
Statistics
Matches: 34, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
18 1 0.03
19 20 0.59
21 12 0.35
22 1 0.03
ACGTcount: A:0.25, C:0.12, G:0.22, T:0.41
Consensus pattern (18 bp):
TGTATCGATACAATTTGG
Found at i:577267 original size:13 final size:13
Alignment explanation
Indices: 577245--577284 Score: 53
Period size: 13 Copynumber: 3.1 Consensus size: 13
577235 ACAATGTTCT
*
577245 TTGTACCGATACA
1 TTGTATCGATACA
*
577258 TTGTATCGATATA
1 TTGTATCGATACA
*
577271 ATGTATCGATACA
1 TTGTATCGATACA
577284 T
1 T
577285 GAGTTACTAT
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
13 22 1.00
ACGTcount: A:0.33, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:579777 original size:20 final size:20
Alignment explanation
Indices: 579752--579803 Score: 86
Period size: 20 Copynumber: 2.6 Consensus size: 20
579742 ACCCTTGTAT
579752 GTATCGATACATATCTAGAC
1 GTATCGATACATATCTAGAC
* *
579772 GTATCGATACATATTTAGAT
1 GTATCGATACATATCTAGAC
579792 GTATCGATACAT
1 GTATCGATACAT
579804 GTTCATTGTA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 30 1.00
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
Consensus pattern (20 bp):
GTATCGATACATATCTAGAC
Found at i:583294 original size:476 final size:476
Alignment explanation
Indices: 580662--589987 Score: 9463
Period size: 476 Copynumber: 19.7 Consensus size: 476
580652 TGAGCTTACA
* * * * *
580662 CTTTGGTTTCGTAAGAAAAGCTTTCTTCCCACCAATTTT-TACAAAGTCTAAGTTCATGCCTCAA
1 CTTTGGTTTCGTAAGAAAGGCTTTCTTCCCTCAAATTTTGT-TAAAGTCTAAGTTCGTGCCTCAA
* *
580726 TTGGGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTACAAACACAT
65 TTGTGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACAT
* * * * *
580791 TCTTCTTATTAGGATAAATGATATTGATGATATTCTTTTGTATGGAAATCTTTTCTTTGCCCTAT
130 TCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTAT
*
580856 TTTCCTTAAAATTAAAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCATAACAGTCTCCATT
195 TTTCCTTAAAATTAAAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCGTAACAGTCTCCATT
* * *
580921 CTTTTCATGATTGGGAACCAAAAATACATTCCTTTCATTAGGATACATGACATTGACACATTGGT
260 CTTTTCATGATTGGGAACCAAAAACACATTCCTTTCATTAGGATACATGACATTGACGCTTTGGT
* *** * * * *
580986 GT--CATAGAATAGCATTTCTTTCAACCACGTTTGATTGAATCAAAGTTTGTGTCTTATATAAAA
325 GTCGCA-AGAAAAGCATTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGA
* * *
581049 CAAACATTAATAGTCATACTAATCCCAATTCTTTTTAGGATTTGGCA-C-T--ACTTAGTCTTCT
389 CAAACATGAATAGTCATACTAATCCCAATTCTTTTCAGGATTAGGCACCATAAACTTAGTCTTCT
* *
581110 CATAAGGATACACGATA-TCAATG
454 AATAAGGATACACGATATTGAA-G
* * * * *
581133 CTTTTGTTTCGTAAGAAAGGTTTTCTTCCCACCAACTTTTG-TAAAGTCTAAGTTCATGCCTCAA
1 CTTTGGTTTCGTAAGAAAGGCTTTCTTCCC-TCAAATTTTGTTAAAGTCTAAGTTCGTGCCTCAA
* * * * *
581197 TTGTGACATACATGGATTCTAGTAATGATCTTCGTTCAATTTGGGATTAGGCACCATAAACACAT
65 TTGTGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACAT
* * *
581262 TCT-CTTATTAGGATAAATGATATTGATGATTTTTTTTTTTTTTGCATGTAAAT-TTTTCTTTGC
130 TCTCCTCATTAGGATAAATGATATTGATGA-----TTTTCTTTTGCATGAAAATCTTTTCTTTGC
* * *
581325 CCTATTTTCCTTAGAAA-CAAAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCATAATAGTC
190 CCTATTTTCCTTA-AAATTAAAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCGTAACAGTC
* * * * * *
581389 TCCATTCCTTTCATGATTGGAAACCAAAAACACATTCCATTCAATAAGATACATGACATTAACGC
254 TCCATTCTTTTCATGATTGGGAACCAAAAACACATTCCTTTCATTAGGATACATGACATTGACGC
* ** * *
581454 TTT-G-GT-GCAAGAAAAGCATTTTTTTTTACCGTTTTTGATAGAATCAAAGTTTATCTCCTAAA
319 TTTGGTGTCGCAAGAAAAGCATTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAA
* *
581516 TAAGACAAACATAAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACTTAGT
384 TAAGACAAACATGAATAGTCATACTAATCCCAATTCTTTTCAGGATTAGGCACCATAAACTTAGT
*
581581 TTTCTAATAAGGATACACGATATTGAAG
449 CTTCTAATAAGGATACACGATATTGAAG
* * * * * * * * *
581609 CATTGGTTTCATTAGAAAGGCTTTCTTCCCACTAGTTTT-TGTAAAGCCAAAAGTTCATGCCTCA
1 CTTTGGTTTCGTAAGAAAGGCTTTCTTCCCTCAAATTTTGT-TAAAGTC-TAAGTTCGTGCCTCA
* * * * * * *
581673 ATGGGGACAAACATGGATTCTAATAATGATTTTCATTCATTTTGTGATTAGGGACTACAAACATA
64 ATTGTGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACA
* * * * ** *
581738 CTCTCCTCATTGGGGTAAATGATATTGATCATTCCCTTTTACATGAAAATCTTTTCTTT-CCCTC
129 TTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCT-
* *
581802 ATTTTCCTTAAAATTAAAGTTCATCTCTTAAAAAAGGCAAGCATTGATTCTCGTAACAGTCTCCA
193 ATTTTCCTTAAAATTAAAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCGTAACAGTCTCCA
* * *
581867 TACTTTTCATGATTGGGAACCAAAAACACATTCCTTTCATTAGAATACATGATATTGACGCTTTG
258 TTCTTTTCATGATTGGGAACCAAAAACACATTCCTTTCATTAGGATACATGACATTGACGCTTTG
** * * * *
581932 GTGTCATAAGAAAAGCATTTTTTTCTACCGTTTTTGATAGAATCAAAGTTTATCACTTAAATAAG
323 GTGTCGCAAGAAAAGCATTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAG
** *
581997 ATGAACATGAATAGTCATACTAATCCCTATTCTTTTCAGGATTAGGCACCATAAACTTAGTCTTC
388 ACAAACATGAATAGTCATACTAATCCCAATTCTTTTCAGGATTAGGCACCATAAACTTAGTCTTC
*
582062 TAATAAGGATACATGATATTGAAG
453 TAATAAGGATACACGATATTGAAG
** ** * *
582086 CAATGGTTTCGTAAGAAAGGCTTTCTTCGCAGCAATTTTTG-TAAAGCCTAAGTT--TGCCTCAA
1 CTTTGGTTTCGTAAGAAAGGCTTTCTTC-CCTCAAATTTTGTTAAAGTCTAAGTTCGTGCCTCAA
* * * * * * * *
582148 CTATGACAAACATGGATTCTTGTAATGATCTTTATTCATTTTATGATTAGGCATTATAAATATAT
65 TTGTGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACAT
* * * *
582213 TCTCCTCATTAGGATAAATGATATTGAAGTTTTTCTTTTGCGTGAAAATCTTTTCGTTGCCCTAT
130 TCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTAT
* *
582278 TTTCCTTAAAATTAAAGTTTATCCCTTAAATAAGGCAAGCATTGGTTC-CTGTAACAGTCTCCAT
195 TTTCCTTAAAATTAAAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTC-GTAACAGTCTCCAT
* * * *
582342 T-TCTTTCATGATTGCGCACCAAAAACAAATTCCTTTCATTAGGATACATGACATTGCCGCTTTG
259 TCT-TTTCATGATTGGGAACCAAAAACACATTCCTTTCATTAGGATACATGACATTGACGCTTTG
* * * * * *
582406 GTGTCACAAG-AAAGCATTTCTTTCAACCATTTTTAATTGAATCAAAGTTTGCCTCTTAAATAAA
323 GTGTCGCAAGAAAAGCATTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAG
* ** * *
582470 ACAAACATGAATAATCATACTAATCCTTATTCTTTTCAAGATTAAGCACCATAAACTTAGTCTTC
388 ACAAACATGAATAGTCATACTAATCCCAATTCTTTTCAGGATTAGGCACCATAAACTTAGTCTTC
* * * *
582535 TTATAAGGATACACAATACTGATG
453 TAATAAGGATACACGATATTGAAG
* * * * * * *
582559 CTTTAGCTTCGCAAGAATGGCTTTCTTCACAC-CAATTTTTG-T-GACTCTAAGTTCGTGCCTCA
1 CTTTGGTTTCGTAAGAAAGGCTTTCTTC-C-CTCAAATTTTGTTAAAGTCTAAGTTCGTGCCTCA
* * * *
582621 ATTGAGACAAACATGGATTCTAGTAAAT-ATCTTCATTCTTTTTCTGATTAGGCACTACAAACAC
64 ATTGTGACAAACATGGATTCTAGT-AATGATCTTCATTCATTTTGTGATTAGGCACTATAAACAC
* * * * * * *
582685 ATTCTCCTTATTAGGATAAAAGATATTGATAATTTTATTTTGCATTAAAATATTTTCTTTGACCT
128 ATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCT
* * * * *
582750 ATTTTCCTTAAAATTAAAGTTTATCCCCTAAATAAGGCAAGCATTGATTCTTGTGACAGTCACCA
193 ATTTTCCTTAAAATTAAAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCGTAACAGTCTCCA
* * * * *
582815 TTCTTTTCTTCATTGGGAACCAAAAACACATTCCTTTCATTAGGATACATGACATTAACCCATTG
258 TTCTTTTCATGATTGGGAACCAAAAACACATTCCTTTCATTAGGATACATGACATTGACGCTTTG
* *
582880 GTGTCACAAGAAAAACATTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAG
323 GTGTCGCAAGAAAAGCATTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAG
* * *
582945 ATAAACATGAATAGTCATACTAATACCCAATT-TTTTCAGGATTAGGCACCATAAACTCAATCTT
388 ACAAACATGAATAGTCATACTAAT-CCCAATTCTTTTCAGGATTAGGCACCATAAACTTAGTCTT
* *
583009 CCT-ATAAGGATATACGATATTGATG
452 -CTAATAAGGATACACGATATTGAAG
* **
583034 CTTTGGTTTCCTAAGAAAGGCTTTCTTCCCTCAAATTTTGTTAAAGTCTAAGTTCGTAACTCAAT
1 CTTTGGTTTCGTAAGAAAGGCTTTCTTCCCTCAAATTTTGTTAAAGTCTAAGTTCGTGCCTCAAT
* ** * * ** *
583099 TGTGACAAACATGGATTTTAGTAATGATCTTCATTCGCTTTATAATTACTCACAATAAACACATT
66 TGTGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATT
* * * * *
583164 ATCCTCATTAGGATAAATGATATT-ATTGATATTCTTTTGCTTGGAAATCTTTGCTTTGCCCTAT
131 CTCCTCATTAGGATAAATGATATTGA-TGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTAT
* * * *
583228 TTTCCTCAAAATCAAAGTTCATCCCTTAAATAAGGCATGCATTGATTCTCGCAACAGTCTCCATT
195 TTTCCTTAAAATTAAAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCGTAACAGTCTCCATT
* * * * * * * *
583293 CTTTTCACGATTAGGAACCGAAAACACATTCCATTCAATAGAATACATGACATTAATGCTTTGGT
260 CTTTTCATGATTGGGAACCAAAAACACATTCCTTTCATTAGGATACATGACATTGACGCTTTGGT
* * * *
583358 GTTGTAAGAAAAGCATTTCTTTCAACCATTCTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAC
325 GTCGCAAGAAAAGCATTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAC
* *
583423 AAACGTGAATAGTCATACTAATCTCC-ATTTTTTTCAGGATTAGGCACCATAAACTTAGTCTTCT
390 AAACATGAATAGTCATACTAATC-CCAATTCTTTTCAGGATTAGGCACCATAAACTTAGTCTTCT
* * * *
583487 AGTCAGGATACATGATATTGAAA
454 AATAAGGATACACGATATTGAAG
* * ** * **
583510 C-----ATT-G--AGAAAGGCTTTCTTCTGAC-CAGTTTTTG-TAAAGGCTAAGTTTATGCCTCA
1 CTTTGGTTTCGTAAGAAAGGCTTTCTTC--CCTCAAATTTTGTTAAAGTCTAAGTTCGTGCCTCA
** * * *
583565 ACAAG-GACAAACATGAATTCTAATAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACAT
64 A-TTGTGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACAC
* * * * * *
583629 ACTCTCCTCGTTGGGATAAATGATATTGATGATTTTCTTTTACATGAAAATCTTTCCTTTGCCCC
128 ATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCT
* * * * *
583694 ATTTTCCTTAAAATTAAAGTTCATCTCTTAAAAAAGGCATGCATTAATTCTCGTAACAATCTCCA
193 ATTTTCCTTAAAATTAAAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCGTAACAGTCTCCA
* * *
583759 TTCTTTTCATGATTGGGAACCAAAAACATATTCCTTTTATTAGGATACATGACATTGACACTTTG
258 TTCTTTTCATGATTGGGAACCAAAAACACATTCCTTTCATTAGGATACATGACATTGACGCTTTG
* ** * * * *
583824 GTG-CTACAAGAAAAGCATTTCTTTCTGCCATTTTTGATAGAGTAAAAGTTTTTCTCTTAAATAA
323 GTGTC-GCAAGAAAAGCATTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAA
* * *
583888 GACAAACATAAATAGTCATACTACTCCTAATTCTTTTCCA-GATTAGGCACCATAAACTTAGTCT
387 GACAAACATGAATAGTCATACTAATCCCAATTCTTTT-CAGGATTAGGCACCATAAACTTAGTCT
* *
583952 TCTAATAAAGATACATGATATTGAAG
451 TCTAATAAGGATACACGATATTGAAG
* * * ** * *
583978 CATTGGTTTCGTGAGAAAGGCTTTCTTCCCATTAGTTTTTG-TGAAG-CGTAAGTTCGTGCCTTA
1 CTTTGGTTTCGTAAGAAAGGCTTTCTTCCC-TCAAATTTTGTTAAAGTC-TAAGTTCGTGCCTCA
** * * * *
584041 ACGGGGACAAACATGGA-TATAGTAATGATCTT-ATTCATTTTGTGATTAGGGACTATAAACATA
64 ATTGTGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACA
* * * * * * *
584104 CTCTCCTCATTGGGATAAATGATATTGATGATTCTCTTTTACATGGAAATCTTTT-TTTTCCACC
129 TTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCC-CT
* * *
584168 ATTTTCCTTAAAATTAAAGTTCATCTCTTAAAAAAGGCAAGCATTGATTCTCATAACAGTCTCCA
193 ATTTTCCTTAAAATTAAAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCGTAACAGTCTCCA
* * * * *
584233 CTCTTTTAATGATTGGGATCCAAAAACATATT-CTTTCCATTAGGATACACGACATTGACGCTTT
258 TTCTTTTCATGATTGGGAACCAAAAACACATTCCTTT-CATTAGGATACATGACATTGACGCTTT
* * *
584297 GGTGTCGCAAGAAAAGCATTTCTTTCTACCGTTTTTTATAGAATCAAAGTTTGTCTCTCAAATAA
322 GGTGTCGCAAGAAAAGCATTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAA
* * ** *
584362 AATAAACATGAATAGTCATACTAATCCTTATTCTTTTCAGGATTAGGCACCCTAAACTTAGTCTT
387 GACAAACATGAATAGTCATACTAATCCCAATTCTTTTCAGGATTAGGCACCATAAACTTAGTCTT
584427 CTAATAAGGATACACGATATTGAAG
452 CTAATAAGGATACACGATATTGAAG
* * * * *
584452 CATTGGTTTTGTAAGAAAGGCTTTCTTCGCAC-CAATTTTTG-TAAAGTCTAAGTTCATGCCTTA
1 CTTTGGTTTCGTAAGAAAGGCTTTCTTC-C-CTCAAATTTTGTTAAAGTCTAAGTTCGTGCCTCA
* * * * ** *
584515 ACTATGACAAACAAGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTTTAGGCATA
64 ATTGTGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACA
* * * * * *
584580 TTCT-CTCCATTAGGATAAATGATATAGAAGTTTTTCTTTTGTATGCAAATCTTTTCGTTGCCCT
129 TTCTCCT-CATTAGGATAAATGATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCT
* * * *
584644 ATTTTTCTTAAAATTAAAGTTCATCCTTTAAATAAGGTAAGCATTAATTC-CTGTAACAGTCTCC
193 ATTTTCCTTAAAATTAAAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTC-GTAACAGTCTCC
* * * * * * * * *
584708 ATTTTTTTCATAATTGTGCACCAGAAACAAATTTCTTTCATTTGGATACATGACATTGATGCTTT
257 ATTCTTTTCATGATTGGGAACCAAAAACACATTCCTTTCATTAGGATACATGACATTGACGCTTT
* ** * *
584773 GGTGCCATAAGAAAAGCATTTCTTTCAACAGTTTTTGATTGAATCAAAGTTTGTCTCTTAAATAA
322 GGTGTCGCAAGAAAAGCATTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAA
* * *
584838 GACAAACATGAATAATCATACTAATCCCTATTATTTT-AGGGATTAGGCACCATAAACTTAGTCT
387 GACAAACATGAATAGTCATACTAATCCCAATTCTTTTCA-GGATTAGGCACCATAAACTTAGTCT
* *
584902 TCTCATAAGGATACACGATATTGATG
451 TCTAATAAGGATACACGATATTGAAG
* * * * * * *
584928 CTTTGGCTTCGCAAGAAAGGCTTTCTTCCCACCAATTTCT-ATAAATTCTAAGTTCGTGCCTAAA
1 CTTTGGTTTCGTAAGAAAGGCTTTCTTCCCTCAAATTT-TGTTAAAGTCTAAGTTCGTGCCTCAA
* ** * * * * *
584992 TTGGGACAAACATGGATTCTAGTAAAAATCTTTATTCATTTTCTGACTAGCCACTACAAACACAT
65 TTGTGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACAT
* * * * * *
585057 TC-CTCTTATTAGGATAAATGATGTTGATGATCTGCCTTTGCATCAAAATCTTTTCTTTGCCCTA
130 TCTC-CTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTA
* * ** **
585121 TTTTCCTTAAAATTAAAGTTCATCACTTAAATATGGCAAGCAAGGATTAGCGTAACAGTCTCCAT
194 TTTTCCTTAAAATTAAAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCGTAACAGTCTCCAT
* * *
585186 TTTTTTCATGATTGGGAACCAAAAACACATTCCTTTCATTAGGATACATGGCATTGATGCTTTGG
259 TCTTTTCATGATTGGGAACCAAAAACACATTCCTTTCATTAGGATACATGACATTGACGCTTTGG
* * * * **
585251 GGTCGCAAGAAAAGCATTTTTCTTTCTACTGTTTTTTGATAGAATGAAAGTGCGTCTCTTAAATA
324 TGTCGCAAGAAAAGCA--TTTCTTTCAACCG-TTTTTGATAGAATCAAAGTTTGTCTCTTAAATA
* * * *
585316 AGAAAAACATGAATAGTCATACTAATCCCCATTCTTTTCAAGAATAGGCACCATAAACTTAGTCT
386 AGACAAACATGAATAGTCATACTAATCCCAATTCTTTTCAGGATTAGGCACCATAAACTTAGTCT
** * * *
585381 TCCCATAAGGATATATGATATTGATG
451 TCTAATAAGGATACACGATATTGAAG
* * * * * *
585407 TTTTGGTTTCATAAGAAAGGTTTTCTTCCTTTAAATTTTGTTAAAGTCTAAGCTCGTGCCTCAAT
1 CTTTGGTTTCGTAAGAAAGGCTTTCTTCCCTCAAATTTTGTTAAAGTCTAAGTTCGTGCCTCAAT
* * * *** ** *
585472 TATGACAAA-ATGGATTTTAGTATTGATCTTCATTTGCTTTGTGATTACTCA-TAATAAAAACAT
66 TGTGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACT-ATAAACACAT
* * * * *
585535 TCTCCTCATTAGGTTAAATCATATT-ATTGTTTTTCTTTTGC-TCAAAAATCTTTTCTTTTCCCT
130 TCTCCTCATTAGGATAAATGATATTGA-TGATTTTCTTTTGCAT-GAAAATCTTTTCTTTGCCCT
* * * *
585598 GCTTTTCC-TAAAATCAAAGTTCATCCCTTAAATAAGCCAAGCATTGATTCTCGTAACAGTCTCT
193 -ATTTTCCTTAAAATTAAAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCGTAACAGTCTCC
* * * * * * *
585662 ATTAC-TTTCATGATTAGGAACTAAAAACACATTCCATTCAATAGGATGCATGACATTCACGATT
257 ATT-CTTTTCATGATTGGGAACCAAAAACACATTCCTTTCATTAGGATACATGACATTGACGCTT
* * * *
585726 TGGTATCGCAAGAAAAGCATTTTTTTCAACCGTTTTTTATGGAATCAAAGTTTGTCTCTTAAAT-
321 TGGTGTCGCAAGAAAAGCATTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATA
* * * * *
585790 -G--AGAC---AA-AGTCATATTAATCCCCACTCTTTTCAGGATTAGACACCATAAACTTAGTCT
386 AGACAAACATGAATAGTCATACTAATCCCAATTCTTTTCAGGATTAGGCACCATAAACTTAGTCT
* * *
585848 TCTAATAAGGATGCACAATATGGAA-
451 TCTAATAAGGATACACGATATTGAAG
* * * * * * * * *
585873 -ATTGGATTCATGAGGAAGGCTTTCTTCCCACCAATTTT-TGCAAAGCCTAAGTTCGTGCCTCAA
1 CTTTGGTTTCGTAAGAAAGGCTTTCTTCCCTCAAATTTTGT-TAAAGTCTAAGTTCGTGCCTCAA
** * * * * *
585936 CGGTGACAAACATTGATTCTAGTAATGATCTTCATTCATTTTCTGACTAGGCACTACAAATACAT
65 TTGTGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACAT
* * * * *
586001 TC-CTCTTATTAGGATAAATGATGTTGATGATCTGCTTTTGCATCAAAATCTTTTCTTTGCCCTA
130 TCTC-CTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTA
* ** ***
586065 TTTTCCTTAAAATTAAAGTTCATCCCTTAAATAACGCAAGCAAGGATAAGCGTAACAGTCTCCAT
194 TTTTCCTTAAAATTAAAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCGTAACAGTCTCCAT
* * * *
586130 TTTTTTCATGATTAGGAACCAAAAACACATTCCTTTCATTAGGATACATGGCATTGATGCTTTAG
259 TCTTTTCATGATTGGGAACCAAAAACACATTCCTTTCATTAGGATACATGACATTGACGCTTT-G
* * * * *
586195 G-GTCGCAAGAATAGCATTTCTTTCTACTGTATTTTGACAGAATCAAAGTGTGTCTCTTAAATAA
323 GTGTCGCAAGAAAAGCATTTCTTTCAACCGT-TTTTGATAGAATCAAAGTTTGTCTCTTAAATAA
* * * * *
586259 GAAAAACATGAATAGTCATACTAATCCCTATTCTTTTCAAGAATAGGCACCATAAACTTAGTCCT
387 GACAAACATGAATAGTCATACTAATCCCAATTCTTTTCAGGATTAGGCACCATAAACTTAGTCTT
** * * *
586324 CCCACAAGGATATATGATATTGACA-
452 CTAATAAGGATACACGATATTGA-AG
* * * * * *
586349 TTTTGGTTTCGTCAA-AAAGGTTTTCTTCCTTCAAACTTTGTTAAAGTCAAAGTTTGTGCCTCAA
1 CTTTGGTTTCGT-AAGAAAGGCTTTCTTCCCTCAAATTTTGTTAAAGTCTAAGTTCGTGCCTCAA
* * * *** * ** * *
586413 TTATGA-AAACATGGATTTTAGTAAAGATCTTCATTTGCTTTATGATTACTCACAATAAAAACAT
65 TTGTGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACAT
* * * *
586477 TCTCTTCATTAGGATAAATCATATT-ATTGTTTTTCTTTTGC-TCGAAAATCTTTTCTTTTCCCT
130 TCTCCTCATTAGGATAAATGATATTGA-TGATTTTCTTTTGCAT-GAAAATCTTTTCTTTGCCCT
* * *
586540 ACTTTTCC-TAAAATCAAAGTTCATCCCTTAAATAAGCCAAGCATTGATTCTCGTAACAGTCTCT
193 A-TTTTCCTTAAAATTAAAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCGTAACAGTCTCC
* * * * * * *
586604 ACTAC-TTTCATGATTGGGAACTAAAAACACATTCCATTCAATAGGATGCATGACATTCACGATT
257 A-TTCTTTTCATGATTGGGAACCAAAAACACATTCCTTTCATTAGGATACATGACATTGACGCTT
* * *
586668 TGGTGTCGCAAGAAAAGCATTTTTTTCAACCATTTTTGATGGAATCAAAGTTTGTCTCTTAAAT-
321 TGGTGTCGCAAGAAAAGCATTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATA
** * * *
586732 -G--GGAC---AA-AGTCATACTAATCCCCACTCTTTTCAGGATTAGACACCATAAACTTAGTCT
386 AGACAAACATGAATAGTCATACTAATCCCAATTCTTTTCAGGATTAGGCACCATAAACTTAGTCT
* ** * *
586790 TCTAATAAGGATGCAAAATATGGAAA
451 TCTAATAAGGATACACGATATTGAAG
* * * * * * * *
586816 C--TGGTTCCATGAGGAAGGCTTTCATCCCACCAATTTT-TGTAAAGCCTAAGTTCGTGCCTCAA
1 CTTTGGTTTCGTAAGAAAGGCTTTCTTCCCTCAAATTTTGT-TAAAGTCTAAGTTCGTGCCTCAA
** * * * *
586878 CGGTGACAAACATTGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGTACTATAAACAAAC
65 TTGTGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACAT
** * * * *
586943 TCTCCTCACAAGGATAAATGATATTAATCATTTTCTTTTACATGAAAATCTTTTCTTTGCCGTAT
130 TCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTAT
* ** ** *
587008 TTTCCTTAAAATTAAAGTTCATCCGTTAAATAAGGCAAGCAAGGATTAGCGTAACATTCTCCATT
195 TTTCCTTAAAATTAAAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCGTAACAGTCTCCATT
* *
587073 TTTTTCATGATTGGGAACCAAAAACACATTCCTTTCATTAGGATACATGACATTGACGCTTTGGG
260 CTTTTCATGATTGGGAACCAAAAACACATTCCTTTCATTAGGATACATGACATTGACGCTTTGGT
* * * * *
587138 GTCACAAGAAAAGCATTTCTTTCTACTGTTTTTTGATAGAATCAAAGTGTGTCTATTAAATAAGA
325 GTCGCAAGAAAAGCATTTCTTTCAACCG-TTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGA
* * * *
587203 AAAACATGAATAGTCATACTAATCCCCATTCTTTTCAAGAATAGGCACCATAAACTTAGTCTTCC
389 CAAACATGAATAGTCATACTAATCCCAATTCTTTTCAGGATTAGGCACCATAAACTTAGTCTT-C
* *
587268 T-ATAAGGATATACGATATTGACG
453 TAATAAGGATACACGATATTGAAG
* * * *
587291 TTTTGGTTTCATAAGAATGGTTTTCTTCCCTCAAATTTTGTTAAAGTCTAAGTTCGTGCCTCAAT
1 CTTTGGTTTCGTAAGAAAGGCTTTCTTCCCTCAAATTTTGTTAAAGTCTAAGTTCGTGCCTCAAT
* * *** ** * *
587356 TATGAC-AACATGGATTTTAGTAATGATCTTCATTTGCTTTGTGATTACTCACAATAAAAACATT
66 TGTGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATT
* * * *
587420 CTCCTCATTAGGATAAATCATATT-ATTG-TTTCCCTTTTGCTTGAAAATCTTTTCTTTTCCCTA
131 CTCCTCATTAGGATAAATGATATTGA-TGATTT-TCTTTTGCATGAAAATCTTTTCTTTGCCCTA
* * * * * *
587483 TTTTTCTTAAAATCAAAGTTCATCCCTTAAACAAGCCAAGCATTGATTCTCATAACAGTCTCTAT
194 TTTTCCTTAAAATTAAAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCGTAACAGTCTCCAT
* * * ** * * *
587548 TAC-TTTCATGAATGGGAACTAAAAACGCATTCCACTCAATAGGATACATGACATTGACGATTTC
259 T-CTTTTCATGATTGGGAACCAAAAACACATTCCTTTCATTAGGATACATGACATTGACGCTTTG
* * * *
587612 GTGTTGCAAGAAAAGCTTTTTTTTTTTTCAACCGTTTTTGATAGAATCAAAGTTTATCTCTTAAA
323 GTGTCGCAAGAAAAGC----ATTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAA
* * * * * * * * *
587677 TGAGACAAACCTAAACAGTCATACTAATCCCCATTCTTTTCAGGA-CA--TACGAT--ACTGA-T
384 TAAGACAAACATGAATAGTCATACTAATCCCAATTCTTTTCAGGATTAGGCACCATAAACTTAGT
* *
587736 GC-T-T--T--GGCTTCAC-A-A--GAAAGG
449 -CTTCTAATAAGGATACACGATATTG-AA-G
* ** * * * * * ***
587757 CTTT--TTTCCT--GCTA-G-TTT-TT--AT-AAA----GCCT-AAGT-T-CGTGCCTCAAT---
1 CTTTGGTTTCGTAAGAAAGGCTTTCTTCCCTCAAATTTTG-TTAAAGTCTAAGTTCGTGCCTCAA
* * * * * *
587802 -TGAGACAAACATGGATTCTTGTAACGATCTTCATTCTTTTTATGATTAGGCACTACAAACACAT
65 TTGTGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACAT
* *** * ** * *
587866 TCTCTTTGCTAGGATAAAAGATATTGATGATTTTCTTTTGCAT-AGATTTCTTTTCTTTGCCTTG
130 TCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGA-AAATCTTTTCTTTGCCCTA
* * *
587930 TTTTCCTTAAAATTAAAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCATAATAGTCACCAT
194 TTTTCCTTAAAATTAAAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCGTAACAGTCTCCAT
* * * * * *
587995 TCTTTTCAGGATTAGGATCCAAAAACACATTCCTTTCATTAGGATACATGACATTTACACATTGG
259 TCTTTTCATGATTGGGAACCAAAAACACATTCCTTTCATTAGGATACATGACATTGACGCTTTGG
* * * * * *
588060 TGTCACAAGAAAAGCATTTCTTTCACCCGTTTTTGCTGGAATCAAAGTTTGTCTTTTAACTAAGA
324 TGTCGCAAGAAAAGCATTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGA
* * * * *
588125 CAAACATGAATAGTAATAGTAATGCCC-ATTCTTTTCAGTAGTAGGCACCATAAACTTTGTCTTC
389 CAAACATGAATAGTCATACTAAT-CCCAATTCTTTTCAGGATTAGGCACCATAAACTTAGTCTTC
** * *
588189 CCATAAGGATATACGATACT-AATG
453 TAATAAGGATACACGATATTGAA-G
* * *
588213 CTTTGCTTTCGTAAGAAGGGCTTTCTTCCCTCAAATTTTGTTAAAGTCTAAGTTAGTGCCTCAAT
1 CTTTGGTTTCGTAAGAAAGGCTTTCTTCCCTCAAATTTTGTTAAAGTCTAAGTTCGTGCCTCAAT
* * * ** * ** * *
588278 TGTGACGAACATGGATT-T--T--TTATCGTCATTCGCTTTATGATTACACTCTATAAAAACATT
66 TGTGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATT
* * * * * * * *
588338 CTTCTCAATAGGACAAATGATATT-ATTGATTTTTTTTTTTGGCTTGGAAATCATTTCTTTGCCT
131 CTCCTCATTAGGATAAATGATATTGA-TGA--TTTTCTTTT-GCATGAAAATCTTTTCTTTGCCC
* * * * * *
588402 TATTTTCCTTAAAATCAAAGTTTA-CCTCTTAAATAAGGCAAGTATTGGTTCTCGTAATAATCTC
192 TATTTTCCTTAAAATTAAAGTTCATCC-CTTAAATAAGGCAAGCATTGATTCTCGTAACAGTCTC
* * * * *
588466 CATTCCTTTCAAGATTGGGAACCAAAAACACATTCCATTCAATAGGATACATGACATTGATGCTT
256 CATTCTTTTCATGATTGGGAACCAAAAACACATTCCTTTCATTAGGATACATGACATTGACGCTT
* *
588531 AGGTGTCGCAAGAAAAGCATTTTTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATA
321 TGGTGTCGCAAGAAAAGCATTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATA
* *
588596 AGACAAACATGAATAGTCATACTAATCCCTATTTTTTTCAGGATTAGGCACCATAAACTTAGTCT
386 AGACAAACATGAATAGTCATACTAATCCCAATTCTTTTCAGGATTAGGCACCATAAACTTAGTCT
* * *
588661 TCTAATAAGGATACATGCTATTGAAA
451 TCTAATAAGGATACACGATATTGAAG
* * * * * * *
588687 CATTGGTTTAGTAGGAAAGGCCTTCTTCTCAC-CAATTTTTG-TAAAGCCTAAGTTCATGCCTCA
1 CTTTGGTTTCGTAAGAAAGGCTTTCTTC-C-CTCAAATTTTGTTAAAGTCTAAGTTCGTGCCTCA
* * * * * *
588750 ACTGAGACAAATAAGGATTCTAGTAATGATCTTCATTTATTTTGTGATTAGGCACTATAAACATA
64 ATTGTGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACA
* * * * * * * *
588815 TTTTCCTCAATAGGAAAAATGATATTGAAGTTTTTGTTTTGCATGGAAATCTTTTCATTGCCCT-
129 TTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTA
* * * * *
588879 TTTT-TTTGAAAAATTAAAGTTTATCCCTTAAATAAAGCAAGCATTGATTCTTGCAACAGTCTCC
194 TTTTCCTT--AAAATTAAAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCGTAACAGTCTCC
* * * * * * * *
588943 ATTTTTTTTAATGATTGGGCACCAAAAACAAATTCCTTTCGTTAAGATACATGACATTGACACGT
257 A-TTCTTTTCATGATTGGGAACCAAAAACACATTCCTTTCATTAGGATACATGACATTGACGCTT
* * * *
589008 TGGTGCCGCAAGAAAAGCATTTCTTTCAACTGTTTTTGATTGAATCAAAGTTTATCTCTTAAATA
321 TGGTGTCGCAAGAAAAGCATTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATA
* * * * *
589073 AGA-AAATCATGAATAATCATACTATTTCCTATTCTTTTCAGGATTAGGCACCATAGACTTAGTC
386 AGACAAA-CATGAATAGTCATACTAATCCCAATTCTTTTCAGGATTAGGCACCATAAACTTAGTC
* * * *
589137 TTATCATAAGGATACAGGATACTGACA-
450 TTCTAATAAGGATACACGATATTGA-AG
* * * *
589164 CTTTGGCTTCGCAAGAAAGGCTTT-TCACCCTCTAATTTCTG-TAAAGTCTAAGTTCGTGCCTCA
1 CTTTGGTTTCGTAAGAAAGGCTTTCT-TCCCTCAAATTT-TGTTAAAGTCTAAGTTCGTGCCTCA
* * * * * *
589227 ATTGGGACAAACATGGATTCTAGTAATAATCTTTACTT-ATTTTCTGATCAGGCACTATAAACAT
64 ATTGTGACAAACATGGATTCTAGTAATGATCTTCA-TTCATTTTGTGATTAGGCACTATAAACAC
* * * * * *
589291 ATTCTCTTTATTAAGATAAAT-ATATTGATGATATTCTTTTGCA-GAGAAAACTTTTCTTTGCCT
128 ATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGA-AAATCTTTTCTTTGCCC
* * * * *
589354 TATTTTCCTTAAAATTAAAGTTCTTCTCTTAAATATGGCAAGCATTGATCCTCGTAACAGCCTCA
192 TATTTTCCTTAAAATTAAAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCGTAACAGTCTC-
* * * * * * *
589419 CATTTTTTTC-TGATTGGGAACCAAAAACACATTCGTTTCACTAGGACACAAGACATTGGCGTTT
256 CATTCTTTTCATGATTGGGAACCAAAAACACATTCCTTTCATTAGGATACATGACATTGACGCTT
** *
589483 TAGG-GTCGCAAGAAAAGCATTTCTTTCAGTCGTTTTTGATCGAATCAAAGTTTGTCTCTTAAAT
321 T-GGTGTCGCAAGAAAAGCATTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAAT
* * * * * * *
589547 AAAAAAAACAAGAATAGTCAGACTAATCCCTATTCTTTTCAAGAATAGGCACCATAAACTTAGTC
385 AAGACAAACATGAATAGTCATACTAATCCCAATTCTTTTCAGGATTAGGCACCATAAACTTAGTC
** * * *
589612 TTCCCATGAGGATATACGATATTGATG
450 TTCTAATAAGGATACACGATATTGAAG
* * *
589639 CTTTGGTTTCGTAAGAAAGGCTTTTTTCCCTCAAATTTTCTTAAAGTGTAAGTTCGTGCCTCAAT
1 CTTTGGTTTCGTAAGAAAGGCTTTCTTCCCTCAAATTTTGTTAAAGTCTAAGTTCGTGCCTCAAT
** * * * * * *** ** *
589704 TGTGATGAACATAGATTTTTGTAATGATCGTCCTTTGCTTTGTGATTACTCACTATAAAAACATT
66 TGTGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATT
* * * * * * ** *
589769 CTCCTCATAAGGATAAATGATATT-ATTCATTTTCTTTTCCTTGGAAATCTTTT-TTTTCATTAC
131 CTCCTCATTAGGATAAATGATATTGA-TGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTAT
* * * * * *
589832 TTTCCATAAAATTAAAGTTAATCCCTTAAATAAGGCAAGCATCGATTCTGGCAACAGTCTCTATT
195 TTTCCTTAAAATTAAAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCGTAACAGTCTCCATT
** *
589897 CTTTTCATGATTGGGAATGAAAAACACATTCCATTT-AATAGGATACATGACATTGACGCTTTGG
260 CTTTTCATGATTGGGAACCAAAAACACATTCC-TTTCATTAGGATACATGACATTGACGCTTTGG
*
589961 TGTCACAAGAAAAGCATTTCTTTCAAC
324 TGTCGCAAGAAAAGCATTTCTTTCAAC
589988 AATTTTGAAA
Statistics
Matches: 7284, Mismatches: 1330, Indels: 478
0.80 0.15 0.05
Matches are distributed among these distances:
443 71 0.01
444 4 0.00
446 10 0.00
447 208 0.03
448 8 0.00
449 2 0.00
450 5 0.00
451 1 0.00
452 6 0.00
453 1 0.00
454 5 0.00
455 1 0.00
456 11 0.00
457 1 0.00
458 5 0.00
459 2 0.00
460 4 0.00
461 2 0.00
462 4 0.00
463 2 0.00
464 9 0.00
465 119 0.02
466 445 0.06
467 189 0.03
468 386 0.05
469 14 0.00
470 34 0.00
471 175 0.02
472 108 0.01
473 215 0.03
474 1450 0.20
475 837 0.11
476 1716 0.24
477 678 0.09
478 252 0.03
479 292 0.04
480 12 0.00
ACGTcount: A:0.32, C:0.18, G:0.14, T:0.36
Consensus pattern (476 bp):
CTTTGGTTTCGTAAGAAAGGCTTTCTTCCCTCAAATTTTGTTAAAGTCTAAGTTCGTGCCTCAAT
TGTGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATT
CTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATT
TTCCTTAAAATTAAAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCGTAACAGTCTCCATTC
TTTTCATGATTGGGAACCAAAAACACATTCCTTTCATTAGGATACATGACATTGACGCTTTGGTG
TCGCAAGAAAAGCATTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACA
AACATGAATAGTCATACTAATCCCAATTCTTTTCAGGATTAGGCACCATAAACTTAGTCTTCTAA
TAAGGATACACGATATTGAAG
Found at i:586769 original size:942 final size:943
Alignment explanation
Indices: 580663--589984 Score: 9195
Period size: 942 Copynumber: 9.9 Consensus size: 943
580653 GAGCTTACAC
* * * * *
580663 TTTGGTTTCGTAAGAAAAGCTTTCTTCCCACCAATTTT-TACAAAGTCTAAGTTCATGCCTCAAT
1 TTTGGTTTCGTAAGAAAGGCTTTCTTCCCTCAAATTTTGT-TAAAGTCTAAGTTCGTGCCTCAAT
** * *
580727 TGGGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTACAAACACATT
65 TATGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAAAACATT
* *
580792 CTTCTT-ATTAGGATAAATGATATTGATGATATTCTTTTG-TATGGAAATCTTTTCTTTGCCCTA
130 C-TCTTCATTAGGATAAATGATATTGATGATTTTCTTTTGCT-TGAAAATCTTTTCTTTGCCCTA
*
580855 TTTTCCTTAAAATTAAAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCATAACAGTCTCCAT
193 TTTTCCTTAAAATTAAAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCGTAACAGTCTCCAT
* *
580920 TCTTTTCATGATTGGGAACCAAAAATACATTCCTTTCATTAGGATACATGACATTGAC-ACATTG
258 TC-TTTCATGATTGGGAACCAAAAACACATTCCTTTCATTAGGATACATGACATTGACGA-TTTG
* *** * * *
580984 GTGT--CATAGAATAGCATTTCTTTCAACCACGTTTGATTGAATCAAAGTTTGTGTCTTATATAA
321 GTGTCGCA-AGAAAAGCATTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTA-A-AT
* * * *
581047 AACAAACATTAATAGTCATACTAATCCCAATTCTTTTTAGGATTTGGCA-C-T--ACTTAGTCTT
383 GA-AAACA--AATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACTTAGTCTT
* ** * * * *
581108 CTCATAAGGATACACGATATCAATG-CTTTTGTTTCGTAAGAAAGGTTTTCTTCCCACCAACTTT
445 CTAATAAGGATACACGATAT---TGAAATTGGTTTCATAAGAAAGGCTTTCTTCCCACCAATTTT
* * * * * *
581172 TGTAAAGTCTAAGTTCATGCCTCAATTGTGACATACATGGATTCTAGTAATGATCTTCGTTCAAT
507 TGTAAAGCCTAAGTTCGTGCCTCAACTGTGACAAACATGGATTCTAGTAATGATCTTCATTCATT
* * *
581237 TTGGGATTAGGCACCATAAACACATT-CTCTTATTAGGATAAATGATATTGATGATTTTTTTTTT
572 TTGTGATTAGGCACTATAAACACATTCCTC-TATTAGGATAAATGATATTGATGA-----TTTTC
* *
581301 TTTTGCATGTAAAT-TTTTCTTTGCCCTATTTTCCTTAGAAA-CAAAGTTCATCCCTTAAATAAG
631 TTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTA-AAATTAAAGTTCATCCCTTAAATAAG
* * ** * *
581364 GCAAGCATTGATTCTCATAATAGTCTCCATTCCTTTCATGATTGGAAACCAAAAACACATTCCAT
695 GCAAGCATTGATTCTCGTAACAGTCTCCATTTTTTTCATGATTGGGAACCAAAAACACATTCCTT
* * * * *
581429 TCAATAAGATACATGACATTAACGCTTT-G-GT-GCAAGAAAAGCATTTTTTTTTACCGTTTTTG
760 TCATTAGGATACATGACATTGACGCTTTGGTGTCGCAAGAAAAGCATTTCTTTCTACCGTTTTTG
* * * * *
581491 ATAGAATCAAAGTTTATCTCCTAAATAAGACAAACATAAATAGTCATACTAATCCCCATTCTTTT
825 ATAGAATCAAAGTTTGTCTCTTAAATAAGAAAAACATGAATAGTCATACTAATCCCTATTCTTTT
* * **
581556 CAGGATTAGGCACCATAAACTTAGTTTTCTAATAAGGATACACGATATTGAAGCA-
890 CAAGATTAGGCACCATAAACTTAGTCTTCCCATAAGGATACACGATATTG-A-CAT
* * * * * * * *
581611 -TTGGTTTCATTAGAAAGGCTTTCTTCCCACTAGTTTT-TGTAAAGCCAAAAGTTCATGCCTCAA
1 TTTGGTTTCGTAAGAAAGGCTTTCTTCCCTCAAATTTTGT-TAAAGTC-TAAGTTCGTGCCTCAA
*** * * * * * * *
581674 TGGGGACAAACATGGATTCTAATAATGATTTTCATTCATTTTGTGATTAGGGACTACAAACATAC
64 TTATGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAAAACAT
* * * * ** * *
581739 TCTCCTCATTGGGGTAAATGATATTGATCATTCCCTTTTACATGAAAATCTTTTCTTT-CCCTCA
129 TCTCTTCATTAGGATAAATGATATTGATGATTTTCTTTTGCTTGAAAATCTTTTCTTTGCCCT-A
* *
581803 TTTTCCTTAAAATTAAAGTTCATCTCTTAAAAAAGGCAAGCATTGATTCTCGTAACAGTCTCCAT
193 TTTTCCTTAAAATTAAAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCGTAACAGTCTCCAT
* * * *
581868 ACTTTTCATGATTGGGAACCAAAAACACATTCCTTTCATTAGAATACATGATATTGACGCTTTGG
258 TC-TTTCATGATTGGGAACCAAAAACACATTCCTTTCATTAGGATACATGACATTGACGATTTGG
** * * * *
581933 TGTCATAAGAAAAGCATTTTTTTCTACCGTTTTTGATAGAATCAAAGTTTATCACTTAAATAAGA
322 TGTCGCAAGAAAAGCATTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAAT--GA
* *
581998 TGAACATGAATAGTCATACTAATCCCTATTCTTTTCAGGATTAGGCACCATAAACTTAGTCTTCT
385 -AAACA--AATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACTTAGTCTTCT
* * * * *
582063 AATAAGGATACATGATATTGAAGCAATGGTTTCGTAAGAAAGGCTTTCTTCGCAGCAATTTTTGT
447 AATAAGGATACACGATATTGAA--ATTGGTTTCATAAGAAAGGCTTTCTTCCCACCAATTTTTGT
* * * *
582128 AAAGCCTAAGTT--TGCCTCAACTATGACAAACATGGATTCTTGTAATGATCTTTATTCATTTTA
510 AAAGCCTAAGTTCGTGCCTCAACTGTGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTG
* * * * * *
582191 TGATTAGGCATTATAAATATATT-CTCCTCATTAGGATAAATGATATTGAAGTTTTTCTTTTGCG
575 TGATTAGGCACTATAAACACATTCCT-CT-ATTAGGATAAATGATATTGATGATTTTCTTTTGCA
* *
582255 TGAAAATCTTTTCGTTGCCCTATTTTCCTTAAAATTAAAGTTTATCCCTTAAATAAGGCAAGCAT
638 TGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATTAAAGTTCATCCCTTAAATAAGGCAAGCAT
* * * * *
582320 TGGTTC-CTGTAACAGTCTCCATTTCTTTCATGATTGCGCACCAAAAACAAATTCCTTTCATTAG
703 TGATTCTC-GTAACAGTCTCCATTTTTTTCATGATTGGGAACCAAAAACACATTCCTTTCATTAG
* * * * * *
582384 GATACATGACATTGCCGCTTTGGTGTCACAAG-AAAGCATTTCTTTCAACCATTTTTAATTGAAT
767 GATACATGACATTGACGCTTTGGTGTCGCAAGAAAAGCATTTCTTTCTACCGTTTTTGATAGAAT
* * *
582448 CAAAGTTTGCCTCTTAAATAA-AACAAACATGAATAATCATACTAATCCTTATTCTTTTCAAGAT
832 CAAAGTTTGTCTCTTAAATAAGAA-AAACATGAATAGTCATACTAATCCCTATTCTTTTCAAGAT
* ** * * ***
582512 TAAGCACCATAAACTTAGTCTTCTTATAAGGATACACAATACTGATGC
896 TAGGCACCATAAACTTAGTCTTCCCATAAGGATACACGATATTGACAT
* * * * * * *
582560 TTTAGCTTCGCAAGAATGGCTTTCTTCACAC-CAATTTTTG-T-GACTCTAAGTTCGTGCCTCAA
1 TTTGGTTTCGTAAGAAAGGCTTTCTTC-C-CTCAAATTTTGTTAAAGTCTAAGTTCGTGCCTCAA
* * * *
582622 TTGA-GACAAACATGGATTCTAGTAAAT-ATCTTCATTCTTTTTCTGATTAGGCACTACAAACAC
64 TT-ATGACAAACATGGATTCTAGT-AATGATCTTCATTCATTTTGTGATTAGGCACTATAAAAAC
* * * * *
582685 ATTCTCCTT-ATTAGGATAAAAGATATTGATAATTTTATTTTGCATT-AAAATATTTTCTTTGAC
127 ATTCT-CTTCATTAGGATAAATGATATTGATGATTTTCTTTTGC-TTGAAAATCTTTTCTTTGCC
* * * * *
582748 CTATTTTCCTTAAAATTAAAGTTTATCCCCTAAATAAGGCAAGCATTGATTCTTGTGACAGTCAC
190 CTATTTTCCTTAAAATTAAAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCGTAACAGTCTC
* * * *
582813 CATTCTTTTCTTCATTGGGAACCAAAAACACATTCCTTTCATTAGGATACATGACATTAACCCA-
255 CATTC-TTTCATGATTGGGAACCAAAAACACATTCCTTTCATTAGGATACATGACATTGA-CGAT
* *
582877 TTGGTGTCACAAGAAAAACATTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAAT
318 TTGGTGTCGCAAGAAAAGCATTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAAT
* * *
582942 AAGATAAACATGAATAGTCATACTAATACCCAATT-TTTTCAGGATTAGGCACCATAAACTCAAT
383 --GA-AAACA--AATAGTCATACTAAT-CCCCATTCTTTTCAGGATTAGGCACCATAAACTTAGT
* ** * * *
583006 CTTCCT-ATAAGGATATACGATATTGATGCTTTGGTTTCCTAAGAAAGGCTTTCTTCCC-TCAAA
442 CTT-CTAATAAGGATACACGATATTGA--AATTGGTTTCATAAGAAAGGCTTTCTTCCCACCAAT
* ** * *
583069 TTTTGTTAAAGTCTAAGTTCGTAACTCAATTGTGACAAACATGGATTTTAGTAATGATCTTCATT
504 TTTTG-TAAAGCCTAAGTTCGTGCCTCAACTGTGACAAACATGGATTCTAGTAATGATCTTCATT
** * * ** * *
583134 CGCTTTATAATTACTCACAATAAACACATTATCCTC-ATTAGGATAAATGATATT-ATTGATATT
568 CATTTTGTGATTAGGCACTATAAACACA-T-TCCTCTATTAGGATAAATGATATTGA-TGATTTT
* * * * *
583197 CTTTTGCTTGGAAATCTTTGCTTTGCCCTATTTTCCTCAAAATCAAAGTTCATCCCTTAAATAAG
630 CTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATTAAAGTTCATCCCTTAAATAAG
* * * * * * *
583262 GCATGCATTGATTCTCGCAACAGTCTCCATTCTTTTCACGATTAGGAACCGAAAACACATTCCAT
695 GCAAGCATTGATTCTCGTAACAGTCTCCATTTTTTTCATGATTGGGAACCAAAAACACATTCCTT
* * * * * * * * *
583327 TCAATAGAATACATGACATTAATGCTTTGGTGTTGTAAGAAAAGCATTTCTTTCAACCATTCTTG
760 TCATTAGGATACATGACATTGACGCTTTGGTGTCGCAAGAAAAGCATTTCTTTCTACCGTTTTTG
* * *
583392 ATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACGTGAATAGTCATACTAATCTCC-ATTTTTT
825 ATAGAATCAAAGTTTGTCTCTTAAATAAGAAAAACATGAATAGTCATACTAATC-CCTATTCTTT
* * * *
583456 TCAGGATTAGGCACCATAAACTTAGTCTT-CTAGTCAGGATACATGATATTGA-A-
889 TCAAGATTAGGCACCATAAACTTAGTCTTCCCA-TAAGGATACACGATATTGACAT
*** * ** * **
583509 ---ACATT-G--AGAAAGGCTTTCTTCTGAC-CAGTTTTTG-TAAAGGCTAAGTTTATGCCTCAA
1 TTTGGTTTCGTAAGAAAGGCTTTCTTC--CCTCAAATTTTGTTAAAGTCTAAGTTCGTGCCTCAA
** * * * * * *
583566 CAAGGACAAACATGAATTCTAATAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACATAC
64 TTATGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAAAACAT
* * * * * * *
583631 TCTCCTCGTTGGGATAAATGATATTGATGATTTTCTTTTACATGAAAATCTTTCCTTTGCCCCAT
129 TCTCTTCATTAGGATAAATGATATTGATGATTTTCTTTTGCTTGAAAATCTTTTCTTTGCCCTAT
* * * * *
583696 TTTCCTTAAAATTAAAGTTCATCTCTTAAAAAAGGCATGCATTAATTCTCGTAACAATCTCCATT
194 TTTCCTTAAAATTAAAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCGTAACAGTCTCCATT
* *
583761 CTTTTCATGATTGGGAACCAAAAACATATTCCTTTTATTAGGATACATGACATTGAC-ACTTTGG
259 C-TTTCATGATTGGGAACCAAAAACACATTCCTTTCATTAGGATACATGACATTGACGA-TTTGG
* ** * * * *
583825 TG-CTACAAGAAAAGCATTTCTTTCTGCCATTTTTGATAGAGTAAAAGTTTTTCTCTTAAATAAG
322 TGTC-GCAAGAAAAGCATTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAAT--G
* **
583889 ACAAACATAAATAGTCATACTACTCCTAATTCTTTTCCA-GATTAGGCACCATAAACTTAGTCTT
384 A-AAAC--AAATAGTCATACTAATCCCCATTCTTTT-CAGGATTAGGCACCATAAACTTAGTCTT
* * * * ** *
583953 CTAATAAAGATACATGATATTGAAGCATTGGTTTCGTGAGAAAGGCTTTCTTCCCATTAGTTTTT
445 CTAATAAGGATACACGATATTGAA--ATTGGTTTCATAAGAAAGGCTTTCTTCCCACCAATTTTT
* * * * * *
584018 GTGAAGCGTAAGTTCGTGCCTTAACGGGGACAAACATGGA-TATAGTAATGATCTT-ATTCATTT
508 GTAAAGCCTAAGTTCGTGCCTCAACTGTGACAAACATGGATTCTAGTAATGATCTTCATTCATTT
* * * * *
584081 TGTGATTAGGGACTATAAACATACTCTCCTC-ATTGGGATAAATGATATTGATGATTCTCTTTTA
573 TGTGATTAGGCACTATAAACACA-T-TCCTCTATTAGGATAAATGATATTGATGATTTTCTTTTG
* * * * *
584145 CATGGAAATCTTTT-TTTTCCACCATTTTCCTTAAAATTAAAGTTCATCTCTTAAAAAAGGCAAG
636 CATGAAAATCTTTTCTTTGCC-CTATTTTCCTTAAAATTAAAGTTCATCCCTTAAATAAGGCAAG
* * * * * *
584209 CATTGATTCTCATAACAGTCTCCACTCTTTTAATGATTGGGATCCAAAAACATATT-CTTTCCAT
700 CATTGATTCTCGTAACAGTCTCCATTTTTTTCATGATTGGGAACCAAAAACACATTCCTTT-CAT
* *
584273 TAGGATACACGACATTGACGCTTTGGTGTCGCAAGAAAAGCATTTCTTTCTACCGTTTTTTATAG
764 TAGGATACATGACATTGACGCTTTGGTGTCGCAAGAAAAGCATTTCTTTCTACCGTTTTTGATAG
* * *
584338 AATCAAAGTTTGTCTCTCAAATAA-AATAAACATGAATAGTCATACTAATCCTTATTCTTTTCAG
829 AATCAAAGTTTGTCTCTTAAATAAGAA-AAACATGAATAGTCATACTAATCCCTATTCTTTTCAA
* **
584402 GATTAGGCACCCTAAACTTAGTCTTCTAATAAGGATACACGATATTGAAGCA-
893 GATTAGGCACCATAAACTTAGTCTTCCCATAAGGATACACGATATTG-A-CAT
* * * *
584454 -TTGGTTTTGTAAGAAAGGCTTTCTTCGCAC-CAATTTTTG-TAAAGTCTAAGTTCATGCCTTAA
1 TTTGGTTTCGTAAGAAAGGCTTTCTTC-C-CTCAAATTTTGTTAAAGTCTAAGTTCGTGCCTCAA
* * * *** *
584516 CTATGACAAACAAGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTTTAGGCATAT
64 TTATGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAAAACAT
* * * * * *
584581 TCTCTCCATTAGGATAAATGATATAGAAGTTTTTCTTTTG-TATGCAAATCTTTTCGTTGCCCTA
129 TCTCTTCATTAGGATAAATGATATTGATGATTTTCTTTTGCT-TGAAAATCTTTTCTTTGCCCTA
* * * *
584645 TTTTTCTTAAAATTAAAGTTCATCCTTTAAATAAGGTAAGCATTAATTC-CTGTAACAGTCTCCA
193 TTTTCCTTAAAATTAAAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTC-GTAACAGTCTCCA
* * * * * * * * * *
584709 TTTTTTTCATAATTGTGCACCAGAAACAAATTTCTTTCATTTGGATACATGACATTGATGCTTTG
257 -TTCTTTCATGATTGGGAACCAAAAACACATTCCTTTCATTAGGATACATGACATTGACGATTTG
* ** * *
584774 GTGCCATAAGAAAAGCATTTCTTTCAACAGTTTTTGATTGAATCAAAGTTTGTCTCTTAAATAAG
321 GTGTCGCAAGAAAAGCATTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAAT--G
* * *
584839 ACAAACATGAATAATCATACTAATCCCTATTATTTT-AGGGATTAGGCACCATAAACTTAGTCTT
384 A-AAACA--AATAGTCATACTAATCCCCATTCTTTTCA-GGATTAGGCACCATAAACTTAGTCTT
* ** * ** *
584903 CTCATAAGGATACACGATATTGATGCTTTGGCTTCGCAAGAAAGGCTTTCTTCCCACCAATTTCT
445 CTAATAAGGATACACGATATTGA--AATTGGTTTCATAAGAAAGGCTTTCTTCCCACCAATTTTT
* ** * * * ** *
584968 ATAAATTCTAAGTTCGTGCCTAAATTGGGACAAACATGGATTCTAGTAAAAATCTTTATTCATTT
508 GTAAAGCCTAAGTTCGTGCCTCAACTGTGACAAACATGGATTCTAGTAATGATCTTCATTCATTT
* * * * * * * *
585033 TCTGACTAGCCACTACAAACACATTCCTCTTATTAGGATAAATGATGTTGATGATCTGCCTTTGC
573 TGTGATTAGGCACTATAAACACATTCCTC-TATTAGGATAAATGATATTGATGATTTTCTTTTGC
* * *
585098 ATCAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATTAAAGTTCATCACTTAAATATGGCAAGCA
637 ATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATTAAAGTTCATCCCTTAAATAAGGCAAGCA
** **
585163 AGGATTAGCGTAACAGTCTCCATTTTTTTCATGATTGGGAACCAAAAACACATTCCTTTCATTAG
702 TTGATTCTCGTAACAGTCTCCATTTTTTTCATGATTGGGAACCAAAAACACATTCCTTTCATTAG
* * * *
585228 GATACATGGCATTGATGCTTTGGGGTCGCAAGAAAAGCATTTTTCTTTCTACTGTTTTTTGATAG
767 GATACATGACATTGACGCTTTGGTGTCGCAAGAAAAGCA--TTTCTTTCTACCG-TTTTTGATAG
* ** *
585293 AATGAAAGTGCGTCTCTTAAATAAGAAAAACATGAATAGTCATACTAATCCCCATTCTTTTCAAG
829 AATCAAAGTTTGTCTCTTAAATAAGAAAAACATGAATAGTCATACTAATCCCTATTCTTTTCAAG
* * * **
585358 AATAGGCACCATAAACTTAGTCTTCCCATAAGGATATATGATATTGATGT
894 ATTAGGCACCATAAACTTAGTCTTCCCATAAGGATACACGATATTGACAT
* * * * *
585408 TTTGGTTTCATAAGAAAGGTTTTCTTCCTTTAAATTTTGTTAAAGTCTAAGCTCGTGCCTCAATT
1 TTTGGTTTCGTAAGAAAGGCTTTCTTCCCTCAAATTTTGTTAAAGTCTAAGTTCGTGCCTCAATT
* * *** **
585473 ATGACAAA-ATGGATTTTAGTATTGATCTTCATTTGCTTTGTGATTACTCA-TAATAAAAACATT
66 ATGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACT-ATAAAAACATT
* * * * ** * *
585536 CTCCTCATTAGGTTAAATCATATT-ATTGTTTTTCTTTTGCTCAAAAATCTTTTCTTTTCCCTGC
130 CTCTTCATTAGGATAAATGATATTGA-TGATTTTCTTTTGCTTGAAAATCTTTTCTTTGCCCT-A
* * *
585600 TTTTCC-TAAAATCAAAGTTCATCCCTTAAATAAGCCAAGCATTGATTCTCGTAACAGTCTCTAT
193 TTTTCCTTAAAATTAAAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCGTAACAGTCTCCAT
* * * * * *
585664 TACTTTCATGATTAGGAACTAAAAACACATTCCATTCAATAGGATGCATGACATTCACGATTTGG
258 T-CTTTCATGATTGGGAACCAAAAACACATTCCTTTCATTAGGATACATGACATTGACGATTTGG
* * * * *
585729 TATCGCAAGAAAAGCATTTTTTTCAACCGTTTTTTATGGAATCAAAGTTTGTCTCTTAAATG-AG
322 TGTCGCAAGAAAAGCATTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATGAAA
* * *
585793 AC-AA-AGTCATATTAATCCCCACTCTTTTCAGGATTAGACACCATAAACTTAGTCTTCTAATAA
387 ACAAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACTTAGTCTTCTAATAA
* * * * * * *
585856 GGATGCACAATATGGAAATTGGATTCATGAGGAAGGCTTTCTTCCCACCAATTTTTGCAAAGCCT
452 GGATACACGATATTGAAATTGGTTTCATAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGCCT
* * * *
585921 AAGTTCGTGCCTCAACGGTGACAAACATTGATTCTAGTAATGATCTTCATTCATTTTCTGACTAG
517 AAGTTCGTGCCTCAACTGTGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAG
* * * * * *
585986 GCACTACAAATACATTCCTCTTATTAGGATAAATGATGTTGATGATCTGCTTTTGCATCAAAATC
582 GCACTATAAACACATTCCTC-TATTAGGATAAATGATATTGATGATTTTCTTTTGCATGAAAATC
* ** ***
586051 TTTTCTTTGCCCTATTTTCCTTAAAATTAAAGTTCATCCCTTAAATAACGCAAGCAAGGATAAGC
646 TTTTCTTTGCCCTATTTTCCTTAAAATTAAAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTC
* *
586116 GTAACAGTCTCCATTTTTTTCATGATTAGGAACCAAAAACACATTCCTTTCATTAGGATACATGG
711 GTAACAGTCTCCATTTTTTTCATGATTGGGAACCAAAAACACATTCCTTTCATTAGGATACATGA
* * * * *
586181 CATTGATGCTTTAGG-GTCGCAAGAATAGCATTTCTTTCTACTGTATTTTGACAGAATCAAAGTG
776 CATTGACGCTTT-GGTGTCGCAAGAAAAGCATTTCTTTCTACCGT-TTTTGATAGAATCAAAGTT
*
586245 TGTCTCTTAAATAAGAAAAACATGAATAGTCATACTAATCCCTATTCTTTTCAAGAATAGGCACC
839 TGTCTCTTAAATAAGAAAAACATGAATAGTCATACTAATCCCTATTCTTTTCAAGATTAGGCACC
* * * *
586310 ATAAACTTAGTCCTCCCACAAGGATATATGATATTGACAT
904 ATAAACTTAGTCTTCCCATAAGGATACACGATATTGACAT
* * * * *
586350 TTTGGTTTCGTCAA-AAAGGTTTTCTTCCTTCAAACTTTGTTAAAGTCAAAGTTTGTGCCTCAAT
1 TTTGGTTTCGT-AAGAAAGGCTTTCTTCCCTCAAATTTTGTTAAAGTCTAAGTTCGTGCCTCAAT
* * *** * ** *
586414 TATGA-AAACATGGATTTTAGTAAAGATCTTCATTTGCTTTATGATTACTCACAATAAAAACATT
65 TATGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAAAACATT
* * * *
586478 CTCTTCATTAGGATAAATCATATT-ATTGTTTTTCTTTTGCTCGAAAATCTTTTCTTTTCCCTAC
130 CTCTTCATTAGGATAAATGATATTGA-TGATTTTCTTTTGCTTGAAAATCTTTTCTTTGCCCTA-
* * *
586542 TTTTCC-TAAAATCAAAGTTCATCCCTTAAATAAGCCAAGCATTGATTCTCGTAACAGTCTCTAC
193 TTTTCCTTAAAATTAAAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCGTAACAGTCTCCA-
* * * * * *
586606 TACTTTCATGATTGGGAACTAAAAACACATTCCATTCAATAGGATGCATGACATTCACGATTTGG
257 TTCTTTCATGATTGGGAACCAAAAACACATTCCTTTCATTAGGATACATGACATTGACGATTTGG
* * * **
586671 TGTCGCAAGAAAAGCATTTTTTTCAACCATTTTTGATGGAATCAAAGTTTGTCTCTTAAATG-GG
322 TGTCGCAAGAAAAGCATTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATGAAA
* *
586735 AC-AA-AGTCATACTAATCCCCACTCTTTTCAGGATTAGACACCATAAACTTAGTCTTCTAATAA
387 ACAAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACTTAGTCTTCTAATAA
* ** * * * * * *
586798 GGATGCAAAATATGGAAACTGGTTCCATGAGGAAGGCTTTCATCCCACCAATTTTTGTAAAGCCT
452 GGATACACGATATTGAAATTGGTTTCATAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGCCT
* *
586863 AAGTTCGTGCCTCAACGGTGACAAACATTGATTCTAGTAATGATCTTCATTCATTTTGTGATTAG
517 AAGTTCGTGCCTCAACTGTGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAG
* * ** * * *
586928 GTACTATAAACAAACTCTCCTC-ACAAGGATAAATGATATTAATCATTTTCTTTTACATGAAAAT
582 GCACTATAAACACA-T-TCCTCTATTAGGATAAATGATATTGATGATTTTCTTTTGCATGAAAAT
* * ** **
586992 CTTTTCTTTGCCGTATTTTCCTTAAAATTAAAGTTCATCCGTTAAATAAGGCAAGCAAGGATTAG
645 CTTTTCTTTGCCCTATTTTCCTTAAAATTAAAGTTCATCCCTTAAATAAGGCAAGCATTGATTCT
*
587057 CGTAACATTCTCCATTTTTTTCATGATTGGGAACCAAAAACACATTCCTTTCATTAGGATACATG
710 CGTAACAGTCTCCATTTTTTTCATGATTGGGAACCAAAAACACATTCCTTTCATTAGGATACATG
* * * *
587122 ACATTGACGCTTTGGGGTCACAAGAAAAGCATTTCTTTCTACTGTTTTTTGATAGAATCAAAGTG
775 ACATTGACGCTTTGGTGTCGCAAGAAAAGCATTTCTTTCTACCG-TTTTTGATAGAATCAAAGTT
* * *
587187 TGTCTATTAAATAAGAAAAACATGAATAGTCATACTAATCCCCATTCTTTTCAAGAATAGGCACC
839 TGTCTCTTAAATAAGAAAAACATGAATAGTCATACTAATCCCTATTCTTTTCAAGATTAGGCACC
* * *
587252 ATAAACTTAGTCTTCCTATAAGGATATACGATATTGACGT
904 ATAAACTTAGTCTTCCCATAAGGATACACGATATTGACAT
* * *
587292 TTTGGTTTCATAAGAATGGTTTTCTTCCCTCAAATTTTGTTAAAGTCTAAGTTCGTGCCTCAATT
1 TTTGGTTTCGTAAGAAAGGCTTTCTTCCCTCAAATTTTGTTAAAGTCTAAGTTCGTGCCTCAATT
* *** ** *
587357 ATGAC-AACATGGATTTTAGTAATGATCTTCATTTGCTTTGTGATTACTCACAATAAAAACATTC
66 ATGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAAAACATTC
* * * *
587421 TCCTCATTAGGATAAATCATATT-ATTG-TTTCCCTTTTGCTTGAAAATCTTTTCTTTTCCCTAT
131 TCTTCATTAGGATAAATGATATTGA-TGATTT-TCTTTTGCTTGAAAATCTTTTCTTTGCCCTAT
* * * * * *
587484 TTTTCTTAAAATCAAAGTTCATCCCTTAAACAAGCCAAGCATTGATTCTCATAACAGTCTCTATT
194 TTTCCTTAAAATTAAAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCGTAACAGTCTCCATT
* * * ** * *
587549 ACTTTCATGAATGGGAACTAAAAACGCATTCCACTCAATAGGATACATGACATTGACGATTTCGT
259 -CTTTCATGATTGGGAACCAAAAACACATTCCTTTCATTAGGATACATGACATTGACGATTTGGT
* * * *
587614 GTTGCAAGAAAAGCTTTTTTTTTTTTCAACCGTTTTTGATAGAATCAAAGTTTATCTCTTAAATG
323 GTCGCAAGAAAAGC----ATTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAAT-
*
587679 AGACAAACCTAAACAGTCATACTAATCCCCATTCTTTTC------AGG-A-C----A--TA----
383 -GA-AAA-C-AAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACTTAGTCT
* ** * * * ** * * *
587726 -C-------GATAC-TG--A-TG-CTTTGGCTTCACAAGAAAGGCTTTTTTCCTGCTAGTTTTTA
444 TCTAATAAGGATACACGATATTGAAATTGGTTTCATAAGAAAGGCTTTCTTCCCACCAATTTTTG
* * * * *
587778 TAAAGCCTAAGTTCGTGCCTCAATTGAGACAAACATGGATTCTTGTAACGATCTTCATTCTTTTT
509 TAAAGCCTAAGTTCGTGCCTCAACTGTGACAAACATGGATTCTAGTAATGATCTTCATTCATTTT
* * * *
587843 ATGATTAGGCACTACAAACACATT-CTCTTTGCTAGGATAAAAGATATTGATGATTTTCTTTTGC
574 GTGATTAGGCACTATAAACACATTCCTCTAT--TAGGATAAATGATATTGATGATTTTCTTTTGC
** * *
587907 AT-AGATTTCTTTTCTTTGCCTTGTTTTCCTTAAAATTAAAGTTCATCCCTTAAATAAGGCAAGC
637 ATGA-AAATCTTTTCTTTGCCCTATTTTCCTTAAAATTAAAGTTCATCCCTTAAATAAGGCAAGC
* * * * * * *
587971 ATTGATTCTCATAATAGTCACCATTCTTTTCAGGATTAGGATCCAAAAACACATTCCTTTCATTA
701 ATTGATTCTCGTAACAGTCTCCATTTTTTTCATGATTGGGAACCAAAAACACATTCCTTTCATTA
* * * * * *
588036 GGATACATGACATTTACACATTGGTGTCACAAGAAAAGCATTTCTTTC-ACCCGTTTTTGCTGGA
766 GGATACATGACATTGACGCTTTGGTGTCGCAAGAAAAGCATTTCTTTCTA-CCGTTTTTGATAGA
* * * * *
588100 ATCAAAGTTTGTCTTTTAACTAAGACAAACATGAATAGTAATAGTAATGCCC-ATTCTTTTC-AG
830 ATCAAAGTTTGTCTCTTAAATAAGAAAAACATGAATAGTCATACTAAT-CCCTATTCTTTTCAAG
* * * *
588163 TAGTAGGCACCATAAACTTTGTCTTCCCATAAGGATATACGATACT-A-AT
894 -ATTAGGCACCATAAACTTAGTCTTCCCATAAGGATACACGATATTGACAT
* * *
588212 GCTTTGCTTTCGTAAGAAGGGCTTTCTTCCCTCAAATTTTGTTAAAGTCTAAGTTAGTGCCTCAA
1 --TTTGGTTTCGTAAGAAAGGCTTTCTTCCCTCAAATTTTGTTAAAGTCTAAGTTCGTGCCTCAA
* * * * ** * ** *
588277 TTGTGACGAACATGGATT-T--T--TTATCGTCATTCGCTTTATGATTACACTCTATAAAAACAT
64 TTATGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAAAACAT
* * * * *
588337 TCT-TCTCAATAGGACAAATGATATT-ATTGATTTTTTTTTTTGGCTTGGAAATCATTTCTTTGC
129 TCTCT-TCATTAGGATAAATGATATTGA-TGA--TTTTCTTTT-GCTTGAAAATCTTTTCTTTGC
* * * * * * *
588400 CTTATTTTCCTTAAAATCAAAGTTTA-CCTCTTAAATAAGGCAAGTATTGGTTCTCGTAATAATC
189 CCTATTTTCCTTAAAATTAAAGTTCATCC-CTTAAATAAGGCAAGCATTGATTCTCGTAACAGTC
* * * * *
588464 TCCATTCCTTTCAAGATTGGGAACCAAAAACACATTCCATTCAATAGGATACATGACATTGATGC
253 TCCATT-CTTTCATGATTGGGAACCAAAAACACATTCCTTTCATTAGGATACATGACATTGACGA
* *
588529 TTAGGTGTCGCAAGAAAAGCATTTTTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAA
317 TTTGGTGTCGCAAGAAAAGCATTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAA
* *
588594 TAAGACAAACATGAATAGTCATACTAATCCCTATTTTTTTCAGGATTAGGCACCATAAACTTAGT
382 T--GA-AAACA--AATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACTTAGT
* * * * *
588659 CTTCTAATAAGGATACATGCTATTGAAACATTGGTTT-AGTAGGAAAGGCCTTCTTCTCACCAAT
442 CTTCTAATAAGGATACACGATATTG-AA-ATTGGTTTCA-TAAGAAAGGCTTTCTTCCCACCAAT
* * * * *
588723 TTTTGTAAAGCCTAAGTTCATGCCTCAACTGAGACAAATAAGGATTCTAGTAATGATCTTCATTT
504 TTTTGTAAAGCCTAAGTTCGTGCCTCAACTGTGACAAACATGGATTCTAGTAATGATCTTCATTC
* * * * * *
588788 ATTTTGTGATTAGGCACTATAAACATATTTTCCTC-AATAGGAAAAATGATATTGAAGTTTTTGT
569 ATTTTGTGATTAGGCACTATAAACACA--TTCCTCTATTAGGATAAATGATATTGATGATTTTCT
* * * * *
588852 TTTGCATGGAAATCTTTTCATTGCCCT-TTTT-TTTGAAAAATTAAAGTTTATCCCTTAAATAAA
632 TTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTT--AAAATTAAAGTTCATCCCTTAAATAAG
* * * * *
588915 GCAAGCATTGATTCTTGCAACAGTCTCCATTTTTTTTAATGATTGGGCACCAAAAACAAATTCCT
695 GCAAGCATTGATTCTCGTAACAGTCTCCA-TTTTTTTCATGATTGGGAACCAAAAACACATTCCT
* * * * * * *
588980 TTCGTTAAGATACATGACATTGACACGTTGGTGCCGCAAGAAAAGCATTTCTTTCAACTGTTTTT
759 TTCATTAGGATACATGACATTGACGCTTTGGTGTCGCAAGAAAAGCATTTCTTTCTACCGTTTTT
* * * * * *
589045 GATTGAATCAAAGTTTATCTCTTAAATAAGAAAATCATGAATAATCATACTATTTCCTATTCTTT
824 GATAGAATCAAAGTTTGTCTCTTAAATAAGAAAAACATGAATAGTCATACTAATCCCTATTCTTT
* * ** * * *
589110 TCAGGATTAGGCACCATAGACTTAGTCTTATCATAAGGATACAGGATACTGACAC
889 TCAAGATTAGGCACCATAAACTTAGTCTTCCCATAAGGATACACGATATTGACAT
* * * *
589165 TTTGGCTTCGCAAGAAAGGCTTT-TCACCCTCTAATTTCTG-TAAAGTCTAAGTTCGTGCCTCAA
1 TTTGGTTTCGTAAGAAAGGCTTTCT-TCCCTCAAATTT-TGTTAAAGTCTAAGTTCGTGCCTCAA
** * * * * * *
589228 TTGGGACAAACATGGATTCTAGTAATAATCTTTACTT-ATTTTCTGATCAGGCACTATAAACATA
64 TTATGACAAACATGGATTCTAGTAATGATCTTCA-TTCATTTTGTGATTAGGCACTATAAAAACA
* * * * * *
589292 TTCTCTTTATTAAGATAAAT-ATATTGATGATATTCTTTTGC-AGAGAAAACTTTTCTTTGCCTT
128 TTCTCTTCATTAGGATAAATGATATTGATGATTTTCTTTTGCTTGA-AAATCTTTTCTTTGCCCT
* * * * *
589355 ATTTTCCTTAAAATTAAAGTTCTTCTCTTAAATATGGCAAGCATTGATCCTCGTAACAGCCTCAC
192 ATTTTCCTTAAAATTAAAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCGTAACAGTCTC-C
* * * * * * *
589420 ATTTTTTTC-TGATTGGGAACCAAAAACACATTCGTTTCACTAGGACACAAGACATTGGCGTTTT
256 A-TTCTTTCATGATTGGGAACCAAAAACACATTCCTTTCATTAGGATACATGACATTGACGATTT
** *
589484 AGG-GTCGCAAGAAAAGCATTTCTTTCAGTCGTTTTTGATCGAATCAAAGTTTGTCTCTTAAATA
320 -GGTGTCGCAAGAAAAGCATTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAAT-
* * * * *
589548 AAAAAAACAAGAATAGTCAGACTAATCCCTATTCTTTTCAAGAATAGGCACCATAAACTTAGTCT
383 --GAAAAC-A-AATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACTTAGTCT
** * * ** * * * *
589613 TCCCATGAGGATATACGATATTGATGCTTTGGTTTCGTAAGAAAGGCTTTTTTCCCTCAAATTTT
444 TCTAATAAGGATACACGATATTGA--AATTGGTTTCATAAGAAAGGCTTTCTTCCCACCAATTTT
** * ** * * * * * ***
589678 CT-TAAAGTGTAAGTTCGTGCCTCAATTGTGATGAACATAGATTTTTGTAATGATCGTCCTTTGC
507 -TGTAAAGCCTAAGTTCGTGCCTCAACTGTGACAAACATGGATTCTAGTAATGATCTTCATTCAT
** * * *
589742 TTTGTGATTACTCACTATAAAAACATT-CTCCTCATAAGGATAAATGATATT-ATTCATTTTCTT
571 TTTGTGATTAGGCACTATAAACACATTCCT-CT-ATTAGGATAAATGATATTGA-TGATTTTCTT
* * * * ** * * *
589805 TTCCTTGGAAATCTTTT-TTTTCATTACTTTCCATAAAATTAAAGTTAATCCCTTAAATAAGGCA
633 TTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATTAAAGTTCATCCCTTAAATAAGGCA
* * * * * **
589869 AGCATCGATTCTGGCAACAGTCTCTATTCTTTTCATGATTGGGAATGAAAAACACATTCCATTT-
698 AGCATTGATTCTCGTAACAGTCTCCATTTTTTTCATGATTGGGAACCAAAAACACATTCC-TTTC
* *
589933 AATAGGATACATGACATTGACGCTTTGGTGTCACAAGAAAAGCATTTCTTTC
762 ATTAGGATACATGACATTGACGCTTTGGTGTCGCAAGAAAAGCATTTCTTTC
589985 AACAATTTTG
Statistics
Matches: 7079, Mismatches: 1059, Indels: 470
0.82 0.12 0.05
Matches are distributed among these distances:
915 1 0.00
916 1 0.00
917 76 0.01
918 57 0.01
920 11 0.00
921 149 0.02
922 169 0.02
923 301 0.04
924 2 0.00
925 2 0.00
928 4 0.00
929 1 0.00
931 2 0.00
935 1 0.00
936 1 0.00
940 2 0.00
941 27 0.00
942 1590 0.22
943 68 0.01
944 712 0.10
945 13 0.00
946 111 0.02
947 82 0.01
948 757 0.11
949 116 0.02
950 1092 0.15
951 515 0.07
952 601 0.08
953 116 0.02
954 284 0.04
955 171 0.02
956 41 0.01
957 3 0.00
ACGTcount: A:0.32, C:0.18, G:0.14, T:0.37
Consensus pattern (943 bp):
TTTGGTTTCGTAAGAAAGGCTTTCTTCCCTCAAATTTTGTTAAAGTCTAAGTTCGTGCCTCAATT
ATGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAAAACATTC
TCTTCATTAGGATAAATGATATTGATGATTTTCTTTTGCTTGAAAATCTTTTCTTTGCCCTATTT
TCCTTAAAATTAAAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCGTAACAGTCTCCATTCT
TTCATGATTGGGAACCAAAAACACATTCCTTTCATTAGGATACATGACATTGACGATTTGGTGTC
GCAAGAAAAGCATTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATGAAAACAA
ATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACTTAGTCTTCTAATAAGGAT
ACACGATATTGAAATTGGTTTCATAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGCCTAAGT
TCGTGCCTCAACTGTGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCAC
TATAAACACATTCCTCTATTAGGATAAATGATATTGATGATTTTCTTTTGCATGAAAATCTTTTC
TTTGCCCTATTTTCCTTAAAATTAAAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCGTAAC
AGTCTCCATTTTTTTCATGATTGGGAACCAAAAACACATTCCTTTCATTAGGATACATGACATTG
ACGCTTTGGTGTCGCAAGAAAAGCATTTCTTTCTACCGTTTTTGATAGAATCAAAGTTTGTCTCT
TAAATAAGAAAAACATGAATAGTCATACTAATCCCTATTCTTTTCAAGATTAGGCACCATAAACT
TAGTCTTCCCATAAGGATACACGATATTGACAT
Found at i:590751 original size:20 final size:20
Alignment explanation
Indices: 590726--590777 Score: 79
Period size: 19 Copynumber: 2.6 Consensus size: 20
590716 TACAAGCCAA
**
590726 TGTATCGATACAATTTTTGG
1 TGTATCGATACAATACTTGG
590746 TGTATCGATAC-ATACTTGG
1 TGTATCGATACAATACTTGG
590765 TGTATCGATACAA
1 TGTATCGATACAA
590778 GTTTGGCTAT
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
19 17 0.59
20 12 0.41
ACGTcount: A:0.29, C:0.13, G:0.19, T:0.38
Consensus pattern (20 bp):
TGTATCGATACAATACTTGG
Found at i:590783 original size:19 final size:18
Alignment explanation
Indices: 590726--590783 Score: 71
Period size: 19 Copynumber: 3.0 Consensus size: 18
590716 TACAAGCCAA
590726 TGTATCGATACAATTTTTGG
1 TGTATCGATACAA--TTTGG
*
590746 TGTATCGATACATACTTGG
1 TGTATCGATACA-ATTTGG
590765 TGTATCGATACAAGTTTGG
1 TGTATCGATACAA-TTTGG
590784 CTATTGCCAA
Statistics
Matches: 34, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
18 1 0.03
19 20 0.59
20 12 0.35
21 1 0.03
ACGTcount: A:0.26, C:0.12, G:0.22, T:0.40
Consensus pattern (18 bp):
TGTATCGATACAATTTGG
Found at i:590842 original size:20 final size:20
Alignment explanation
Indices: 590797--590869 Score: 76
Period size: 20 Copynumber: 3.6 Consensus size: 20
590787 TTGCCAAGAA
***
590797 ATGTATCGATACATCTTTTTC
1 ATGTATCGATACAT-TGAATC
590818 ATGTATCGATACATTGCAA-C
1 ATGTATCGATACATTG-AATC
* *
590838 ATGTATCGATACTTTGAATT
1 ATGTATCGATACATTGAATC
590858 ATGTATCGATAC
1 ATGTATCGATAC
590870 TTTTAAGGGT
Statistics
Matches: 45, Mismatches: 5, Indels: 5
0.82 0.09 0.09
Matches are distributed among these distances:
19 2 0.04
20 29 0.64
21 14 0.31
ACGTcount: A:0.30, C:0.16, G:0.14, T:0.40
Consensus pattern (20 bp):
ATGTATCGATACATTGAATC
Found at i:590870 original size:20 final size:20
Alignment explanation
Indices: 590817--590872 Score: 78
Period size: 20 Copynumber: 2.8 Consensus size: 20
590807 ACATCTTTTT
*
590817 CATGTATCGATACATTGCAA
1 CATGTATCGATACTTTGCAA
590837 CATGTATCGATACTTTG-AA
1 CATGTATCGATACTTTGCAA
*
590856 TTATGTATCGATACTTT
1 -CATGTATCGATACTTT
590873 TAAGGGTTTT
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
19 2 0.06
20 31 0.94
ACGTcount: A:0.30, C:0.16, G:0.14, T:0.39
Consensus pattern (20 bp):
CATGTATCGATACTTTGCAA
Found at i:591497 original size:21 final size:21
Alignment explanation
Indices: 591456--591499 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
591446 CTCCCCTTAA
* *
591456 TCTCCCCCGTTTATTAATAAT
1 TCTCCCCCGTTAATCAATAAT
591477 TCTCCCCC-TTAATCAAGTAAT
1 TCTCCCCCGTTAATCAA-TAAT
591498 TC
1 TC
591500 ATATCAAAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
20 6 0.30
21 14 0.70
ACGTcount: A:0.25, C:0.32, G:0.05, T:0.39
Consensus pattern (21 bp):
TCTCCCCCGTTAATCAATAAT
Found at i:592850 original size:21 final size:20
Alignment explanation
Indices: 592821--592863 Score: 50
Period size: 20 Copynumber: 2.1 Consensus size: 20
592811 GACTAGTGTG
* *
592821 GGGACTGCCCGGTTATGACCT
1 GGGACTG-CCGGTCACGACCT
*
592842 GGGAGTGCCGGTCACGACCT
1 GGGACTGCCGGTCACGACCT
592862 GG
1 GG
592864 TGATGCTGCC
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
20 13 0.68
21 6 0.32
ACGTcount: A:0.14, C:0.28, G:0.40, T:0.19
Consensus pattern (20 bp):
GGGACTGCCGGTCACGACCT
Found at i:593322 original size:13 final size:13
Alignment explanation
Indices: 593304--593329 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
593294 ATAATCACCC
593304 TGTATCGATACAA
1 TGTATCGATACAA
593317 TGTATCGATACAA
1 TGTATCGATACAA
593330 AGAAAAATGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:597266 original size:21 final size:21
Alignment explanation
Indices: 597237--597281 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
597227 AAGTTTTCAT
*
597237 TTTTCTTAGCTAAC-TCATTA
1 TTTTCTTAGCCAACTTCATTA
*
597257 TTTTCATTAGCCAACTTCTTTA
1 TTTTC-TTAGCCAACTTCATTA
597279 TTT
1 TTT
597282 CAACTTGCAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 5 0.24
21 8 0.38
22 8 0.38
ACGTcount: A:0.22, C:0.20, G:0.04, T:0.53
Consensus pattern (21 bp):
TTTTCTTAGCCAACTTCATTA
Found at i:599513 original size:13 final size:13
Alignment explanation
Indices: 599495--599520 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
599485 CAATTTTTGG
599495 TGTATCGATACAT
1 TGTATCGATACAT
599508 TGTATCGATACAT
1 TGTATCGATACAT
599521 ACTTGGTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:599532 original size:32 final size:33
Alignment explanation
Indices: 599475--599538 Score: 103
Period size: 32 Copynumber: 2.0 Consensus size: 33
599465 TACAAGCCAA
**
599475 TGTATCGATACAATTTTTGGTGTATCGATACAT
1 TGTATCGATACAATACTTGGTGTATCGATACAT
599508 TGTATCGATAC-ATACTTGGTGTATCGATACA
1 TGTATCGATACAATACTTGGTGTATCGATACA
599539 AGTTTGGCTA
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
32 18 0.62
33 11 0.38
ACGTcount: A:0.28, C:0.14, G:0.19, T:0.39
Consensus pattern (33 bp):
TGTATCGATACAATACTTGGTGTATCGATACAT
Found at i:599545 original size:19 final size:18
Alignment explanation
Indices: 599475--599545 Score: 62
Period size: 19 Copynumber: 4.0 Consensus size: 18
599465 TACAAGCCAA
599475 TGTATCGATACAATTTTTGG
1 TGTATCGATACAA--TTTGG
599495 TGTATCGATAC-A--T--
1 TGTATCGATACAATTTGG
*
599508 TGTATCGATACATACTTGG
1 TGTATCGATACA-ATTTGG
599527 TGTATCGATACAAGTTTGG
1 TGTATCGATACAA-TTTGG
599546 CTACTGCCAA
Statistics
Matches: 43, Mismatches: 1, Indels: 15
0.73 0.02 0.25
Matches are distributed among these distances:
13 11 0.26
15 2 0.05
17 1 0.02
18 1 0.02
19 17 0.40
20 11 0.26
ACGTcount: A:0.27, C:0.13, G:0.21, T:0.39
Consensus pattern (18 bp):
TGTATCGATACAATTTGG
Found at i:601098 original size:476 final size:475
Alignment explanation
Indices: 599905--604768 Score: 4670
Period size: 476 Copynumber: 10.4 Consensus size: 475
599895 TCCTAACAAA
* * * * *
599905 TTTTTTATAGAATTAAAGTTTGTCTCTTAAATGAGACAAACATGAATAGTCATACTAATCCCTAA
1 TTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCAT
* * *
599970 TCTTTTCAGGATTAGGCACCATATATTTAGTCTTCTAATTAGGATACACGATATTGAAGCATTGG
66 TCTTTTCAGGATTAGGCACCATAAACTTAGTCTTCTAATAAGGATACACGATATTGAAGCATTGG
* * * * * * ** *
600035 -TTTCATGAA-AAAGGCTTTCCTCCCACCAATTTTTGTAAAGCCTAAATTCGTTCCTCGACAGGG
131 CTTT-GT-AAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGCCTAAGTTCATGCCTCAATTGTG
* * * * * * * *
600098 ACAAAGATAGATTCCAATAATGATTTTCATTCATTTTGTGATTTGGCACTATAAACAAACTCTCC
194 ACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCC
* *
600163 TCATTGGGATAAATGATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTTT
259 TCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTTC
** *
600228 TTAAAATTAAAGTTCATCAGTTAAATAAGGCAAGCATTGATTCTCGTAACAATCTCCATTCTTTT
324 TTAAAATTAAAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCGTAACAGTCTCCATTCTTTT
* * *
600293 CATGATTGGGAACCAAAAACATATTCCTTTCATTATGATATACTTGACATTGACGCTTTGGCATC
389 CATGATTGGGAACCAAAAACACATTCCTTTCATTA--AGATACATGACATTGACGCTTTGG--TC
** *
600358 T-CAAGAAAAGCATTTCTTTCTGCAG
450 TGCAAGAAAAGCATTTCTTTCAACCG
* *
600383 TTTTTGATAGAATCAAAGTTTGTTTCTTAAATAAAACAAACATGAATAGTCATACTAATCCCCAT
1 TTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCAT
** * * * * *
600448 TCTTTTTTGAATTAGGAACCGTAAACTTAGTATTCTAATAAGGATACACGATGTTGAAGCATTGG
66 TCTTTTCAGGATTAGGCACCATAAACTTAGTCTTCTAATAAGGATACACGATATTGAAGCATTGG
* * * * * * *
600513 TTTTGTAAGAAAAGCTTTCGTT-CAACCAATTTTTGTAAAGCCTAAGTTCATGCCTCGACTATAA
131 CTTTGTAAGAAAGGCTTTC-TTCCCACCAATTTTTGTAAAGCCTAAGTTCATGCCTCAATTGTGA
* * * *
600577 TAAACATGGATTCTAGCAATGATCTTCATTCATTTTGTGATTAGGCA-TAATAAGCATATTCTCC
195 CAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACT-ATAAACACATTCTCC
* * * * * *
600641 TCATTAGGATTAATGATATTGAAGTTTTTCTTTTGCATGAAAATCTTTTCATTGTCCTGTTTTTC
259 TCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTTC
* * * ** *
600706 TTAAAATTAAAGTTCAACCCATAAATAAGGCAAGCATTGATTCTTGTAGTAGTCTCCATTGTTTT
324 TTAAAATTAAAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCGTAACAGTCTCCATTCTTTT
* * *
600771 CATGATTGGGCACCAAAAACACAATCCTTTCATTAAGTTACATGACATTGACGCTTTGGTACTGC
389 CATGATTGGGAACCAAAAACACATTCCTTTCATTAAGATACATGACATTGACGCTTTGGT-CTGC
600836 AAGAAAAGCATTTCTTTCAACCG
453 AAGAAAAGCATTTCTTTCAACCG
* * *
600859 TTTTTGATTA-AATCAAAGTTTGTCTCTTAAATAAGGCAAACATGAATAATCATACTAATCCCTA
1 TTTTTGA-TAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCA
* * * * * * * *
600923 TTTTTTTCAAGATTAGGCACCATAAACTTAGTCTTCTCATAAAGATACAGGATACTGACGCCTTG
65 TTCTTTTCAGGATTAGGCACCATAAACTTAGTCTTCTAATAAGGATACACGATATTGAAGCATTG
* * * * ** * *
600988 GCTTTGCAAGAAGGGCTTT-TTACTCACCAATTTCTACAAAGTCTAAGTTCATGCCTCAATTGAG
130 GCTTTGTAAGAAAGGCTTTCTT-CCCACCAATTTTTGTAAAGCCTAAGTTCATGCCTCAATTGTG
* * * * * * * *
601052 ACAAGCATGGTTTCTTGTAATGATCTTCATTCTTTTTCTAATTAGGCACTACAAACACATTCTCT
194 ACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCC
** * * * *
601117 TTGTTAGGATAAAAGATATTGATGATTTTCTTTGGGAT-AGAAATCTTTTCTTTGCCCTATTTTC
259 TCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGA-AAATCTTTTCTTTGCCCTATTTTT
* * * *
601181 CTTAAAATTAAAGTTCATCCCTTAAATAAGGCCAGCATTGATTCTCATAATAGTCACCATTCTTT
323 CTTAAAATTAAAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCGTAACAGTCTCCATTCTTT
* * * * * * *
601246 TCATGATTGGGATCCAAAAACACATTCCCTTCATTAGGATACATGACATTGACACATTGGTGTCA
388 TCATGATTGGGAACCAAAAACACATTCCTTTCATTAAGATACATGACATTGACGCTTTGGTCT-G
* *
601311 CAAGAAAAGCATTTCTTTC-ATCA
452 CAAGAAAAGCATTTCTTTCAACCG
* * * * * *
601334 TTTTTGGTAGAATCAAAGTTTGTCTCTTAACTAAGACAAACATGAATAGTAATAGTCATGCCCAT
1 TTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCAT
* * * ** * * *
601399 TCGTTTCAGGAATAGCCACCATAAACTTAGTCTTCCCATAAGGATATACGATACT-AATGC-TTT
66 TCTTTTCAGGATTAGGCACCATAAACTTAGTCTTCTAATAAGGATACACGATATTGAA-GCATTG
* * * *
601462 GCTTTCGTAA-AAAGGGCTTTCTTCCC-TCAAATTTTGTTAAAGTCTAAGTT-AGTGCCTTAATT
130 GCTTT-GTAAGAAA-GGCTTTCTTCCCACCAATTTTTG-TAAAGCCTAAGTTCA-TGCCTCAATT
* * * ** * ** *
601524 GTGACGAACATGGATT-T--T--TTATCATCATTCGCTTTATGATTACACACTATAAAAACATTC
191 GTGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTC
* * * *
601584 TTCTCAATAGGATAAATGATATT-ATTGATTTTTTTTTTGCTTGAAAATCTTTTCTTTGCCCTA-
256 TCCTCATTAGGATAAATGATATTGA-TGA-TTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTAT
* * * **
601647 TTTTCTTTAAAATCAAA-TACATCTCTTAAATAAGGCAAGCATTGATTCTCGTAGTAGTCTCCAT
319 TTTTC-TTAAAATTAAAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCGTAACAGTCTCCAT
*
601711 T-TCTTTCATGTTTGGGAACCAAAAAACACATT-C---C------AT---T--CA---A------
383 TCT-TTTCATGATTGGGAACC-AAAAACACATTCCTTTCATTAAGATACATGACATTGACGCTTT
601751 ----TGCAAGAAAAGCATTTCTTTCAACCG
446 GGTCTGCAAGAAAAGCATTTCTTTCAACCG
*
601777 TTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGATAAACATGAATAGTCATACTAATCCCCAT
1 TTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCAT
* *
601842 TCTTTTCAGGATTAGGCACCATCAACTTAATCTTCTAATAAGGATACACGATATTGAAGCATTGG
66 TCTTTTCAGGATTAGGCACCATAAACTTAGTCTTCTAATAAGGATACACGATATTGAAGCATTGG
* *
601907 -TTTAGTAGGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGCCTAAGTTCATGCCTCAACTGTGA
131 CTTT-GTAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGCCTAAGTTCATGCCTCAATTGTGA
* * * * *
601971 CAAATAAGGATTCTAGTAATGATCTTCATTTATTTTGTGATTAGGCACTATAAACATATTTTCCT
195 CAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCT
* * * * *
602036 CAATACGATAAATGATATTGAAGTTTTTCTTTTGCATTG-AAATCTTTTCATTGCCCTATTTTT-
260 CATTAGGATAAATGATATTGATGATTTTCTTTTGCA-TGAAAATCTTTTCTTTGCCCTATTTTTC
* ** * * * * * *
602099 TGTAAAATTAAAGTTTATCCCTTAAATAAACCAAGCATTGTTTCTTGCAATAGTCT-CTTTTTTT
324 T-TAAAATTAAAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCGTAACAGTCTCCATTCTTT
* * * * * *
602163 TCATGATTGGGCACCAAAAATATC-TTCCTTTCATTTAGATACAAGACATTGACGCTTCGGTGCC
388 TCATGATTGGGAACCAAAAACA-CATTCCTTTCATTAAGATACATGACATTGACGCTTTGGT-CT
*
602227 GCAAGAAAAGCATTTCTGTCAACCG
451 GCAAGAAAAGCATTTCTTTCAACCG
* * * *
602252 TTTTTGAGTA-AATCAAAGTTTATCTCTTATATAAGA-AAATCATGAATAATCATACTAATCCCT
1 TTTTTGA-TAGAATCAAAGTTTGTCTCTTAAATAAGACAAA-CATGAATAGTCATACTAATCCCC
* * * * *
602315 ATTCTTTTCAGGATTAGGCACCATATACTTAGTCATCTCATAAGGATATACGATACT-AATGC-T
64 ATTCTTTTCAGGATTAGGCACCATAAACTTAGTCTTCTAATAAGGATACACGATATTGAA-GCAT
* * * * * *
602378 TTGCTTTCGTAAGAAGGGCTTTCTTCCC-TCAAATTTTGTTAAAGTCTAAGTT-AGTGCCTTAAT
128 TGGCTTT-GTAAGAAAGGCTTTCTTCCCACCAATTTTTG-TAAAGCCTAAGTTCA-TGCCTCAAT
* * ** * ** *
602441 TGTGACGAACATGGATT-T--T--TGATCATCATTCGCTTTATGATTACACACTATAAAAACATT
190 TGTGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATT
* * * * *
602501 CTTCTCAATATGATAAATGATATT-ATTGATTTTTTTTTGCTTGAAAATCTTTTCTTTGCCCTA-
255 CTCCTCATTAGGATAAATGATATTGA-TGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTAT
* * **
602564 TTTTCTTTAAAATCAAA-TTCATCTCTTAAATAAGGCAAGCATTGATTCTCGTAGTAGTCTCCAT
319 TTTTC-TTAAAATTAAAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCGTAACAGTCTCCAT
*
602628 T-TCTTTCATGTTTGGGAACCAAAAACACATT-C---C------AT---T--CA---A-------
383 TCT-TTTCATGATTGGGAACCAAAAACACATTCCTTTCATTAAGATACATGACATTGACGCTTTG
602667 ---TGCAAGAAAAGCATTTCTTTCAACCG
447 GTCTGCAAGAAAAGCATTTCTTTCAACCG
* *
602693 TTTTTGATGGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCCTACTAATCCCCAT
1 TTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCAT
* * * *
602758 TCTTTTCAGGATTAGGCACCGTAAACTTAGTTTTCTAATAAGGATACATGATGTTGAAGCATTGG
66 TCTTTTCAGGATTAGGCACCATAAACTTAGTCTTCTAATAAGGATACACGATATTGAAGCATTGG
* * ** * *
602823 TTTTATAAGAAAGGCTTTCTTCCCACCAGCTTTTGTAAAGCCTAAGTTCGTGCCTCAACTGTGAC
131 CTTTGTAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGCCTAAGTTCATGCCTCAATTGTGAC
* * * * *
602888 AAATAAGGATTCTAGTAATGATCTTCATTTATTTTGTGATTAGGCACTATAAACATATTTTCCTC
196 AAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTC
* * * * * *
602953 AATAGGACAAATGATATTGAAGTTTTTCTTTTGCATTG-AAATCTTTTCATTGCCCTATTTTTCG
261 ATTAGGATAAATGATATTGATGATTTTCTTTTGCA-TGAAAATCTTTTCTTTGCCCTATTTTTCT
** * * * * * ** *
603017 TAAAATTAAAGTTTGTCGCTCAAATAAGGCAAGCATTGTTTCTTGCAACAGTCTCTTTTTTTTTC
325 TAAAATTAAAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCGTAACAGTCTCCATTCTTTTC
* * * *
603082 ATGATTGGGCACCAAAAATATATTCCTTTCATTTAGATACATGACATTGACGCTTTGGTGCTGCA
390 ATGATTGGGAACCAAAAACACATTCCTTTCATTAAGATACATGACATTGACGCTTTGGT-CTGCA
603147 AGAAAAGCATTTCTTTCAACCG
454 AGAAAAGCATTTCTTTCAACCG
* * * * *
603169 TTTTTGA-ATGAATCAAAGTTTATCTCTTATATAA-AAAAATCATGAATAATCATACTAATCCCT
1 TTTTTGATA-GAATCAAAGTTTGTCTCTTAAATAAGACAAA-CATGAATAGTCATACTAATCCCC
* * *
603232 ATTCTTTTCAGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACAGGATACT-AA-CACC
64 ATTCTTTTCAGGATTAGGCACCATAAACTTAGTCTTCTAATAAGGATACACGATATTGAAGCA--
* * * * * *
603295 TTGGCTTTGCAAGAAACGCTTT-TTACCCAGCAATTTCTGTAAAGTCTAAGTTCATGCCTTAATT
127 TTGGCTTTGTAAGAAAGGCTTTCTT-CCCACCAATTTTTGTAAAGCCTAAGTTCATGCCTCAATT
* * * * * * *
603359 GGGACAAACATGGATTCTAGTAATAATCTTTACTCATTTTCTGATTAGGCACTACAAACACATTT
191 GTGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTC
** * * * * * *
603424 TTTTTATTAAGATAAATGATATTTATGATATTCTTTTGCATAAAAATCTTTTCTTTGCCTTATTT
256 TCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTT
* * * * * ** * *
603489 TCCTTAAAATTATAGTTCTTCCCTAAAATAAAGTGAGCATTGATCCTCGTAACAGTCTCCCTTTT
321 TTCTTAAAATTAAAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCGTAACAGTCT-CC-ATT
* * ** * *
603554 CTTTTCCTGATTGGGAACCAAAAACACATTCATTTCATTTGGACACAAGACATTGACGCTTTGGG
384 CTTTTCATGATTGGGAACCAAAAACACATTCCTTTCATTAAGATACATGACATTGACGCTTT--G
* *
603619 GTC-GCAAGAAAAGCATTTCTATCAACCA
447 GTCTGCAAGAAAAGCATTTCTTTCAACCG
* * * * * *
603647 TTTTTGATCGAATCAAAATTTGTCTCCTAAATAAGAAAAACATGAATAGTCACACCAATCCCCAT
1 TTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCAT
** * ** * * *
603712 TCTTTTCAAAAATAGGCACCATAAACTTAGTCTTCCCATAAGGATATACGATATTGATGCTTTGG
66 TCTTTTCAGGATTAGGCACCATAAACTTAGTCTTCTAATAAGGATACACGATATTGAAGCATTGG
* * * * * *
603777 -TTTCGTAAGAAAGGCTTTCTTCCCTCAAATTTTCT-TAAAGTCTAAGCTCGTACCTCAATTGTG
131 CTTT-GTAAGAAAGGCTTTCTTCCCACCAATTTT-TGTAAAGCCTAAGTTCATGCCTCAATTGTG
** * * * * ** * ** *
603840 ATGAACATAGATTTTTA-TAACGATCTTCCTTCGCTTTGAGATTACTCACTATAAA-AGCATTTT
194 ACAAACATGGA-TTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACA-CATTCT
* * * * *
603903 CCTCATAAGGATAAATGATATT-ATTGACTTTCTTTTCCTTGGAAATCTTTTCTTT-CCCTTATT
257 CCTCATTAGGATAAATGATATTGA-TGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCC-TATT
* * * *
603966 TTTCATAAAA-TCAA----A-CCCTTAAATAAGGCAGGCATTGATTCTCGTAACAGTCTCTATTC
320 TTTCTTAAAATTAAAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCGTAACAGTCTCCATTC
* * * * * * *
604025 CTTTCACGATTGGGAACCAAAAACACATTCCATTAAATAGGATACATGACATTGACGCTTTGGTG
385 TTTTCATGATTGGGAACCAAAAACACATTCCTTTCATTAAGATACATGACATTGACGCTTTGGTC
* * **
604090 TCACAAGAAAAGCATTTCTTTGAACAA
450 T-GCAAGAAAAGCATTTCTTTCAACCG
** * * *
604117 TGTTTT-ATAGAATCAAAGTTTGTCTCTTAAATGGGACAATCTTGAATAGTCATACTAATCCCTA
1 T-TTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCA
* * * *
604181 ATCTTTTCAGGATTAGGCACCATATATTTAGTCTTCTAATTAGGATACACGATATT-AAGCATTG
65 TTCTTTTCAGGATTAGGCACCATAAACTTAGTCTTCTAATAAGGATACACGATATTGAAGCATTG
* * * * * * *
604245 GTTTTATGAA-AAAGGCTTTCTTCCCACCAGTTTTTGTAAAGCCTAAATTC-TAGCCACCA-CGT
130 GCTTTGT-AAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGCCTAAGTTCAT-GCCTCAATTG-
* * * *
604307 TGACAAACATAGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGTCACTATAAACAAACTCT
192 TGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCT
* * *
604372 CCTCATTAGGATAAATGATACTGATGATTTTCTTTTACATGAAAATCTTTT-TTT-TCCTATTTT
257 CCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTT
* * ** * *
604435 CCTTAAAATTAAAGCTCATCTGTTAAATAAGGGAAGCATTGATTCTCGTAACAATCTCCATTCTT
322 TCTTAAAATTAAAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCGTAACAGTCTCCATTCTT
* * * * *
604500 TTCATGATTGGGAACTAAAAACACATTCCTTTCATTAGGATACTTGACATTGAAGCTTTGGTGTC
387 TTCATGATTGGGAACCAAAAACACATTCCTTTCATTAAGATACATGACATTGACGCTTTGGTCT-
* *
604565 GCAAGAAAAGCATTTCTTTCTACAG
451 GCAAGAAAAGCATTTCTTTCAACCG
* * * * * *
604590 TTTTTGATAGAATTAAAGTTTGTTTCTCAAATAAGACAAACATAAATAGTTATACTAACCCCCAT
1 TTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCAT
* * * * * *
604655 TCTTTTTAAGATTAGGCACCATAAGCTTAGTATTCTAATAAGGATACACGATGTTTAAGCATTGG
66 TCTTTTCAGGATTAGGCACCATAAACTTAGTCTTCTAATAAGGATACACGATATTGAAGCATTGG
* *
604720 -TTTCGTAAGAAAAGCTTTCTTCCAACCAATTTTTGTAAAGCCTAAGTTC
131 CTTT-GTAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGCCTAAGTTC
604769 TCCCCCTTCG
Statistics
Matches: 3564, Mismatches: 650, Indels: 348
0.78 0.14 0.08
Matches are distributed among these distances:
440 1 0.00
441 176 0.05
442 38 0.01
443 160 0.04
444 19 0.01
446 100 0.03
447 126 0.04
448 96 0.03
449 1 0.00
450 1 0.00
451 1 0.00
452 1 0.00
453 1 0.00
455 2 0.00
456 4 0.00
457 2 0.00
458 1 0.00
460 3 0.00
461 4 0.00
462 2 0.00
464 1 0.00
465 1 0.00
466 1 0.00
467 13 0.00
468 18 0.01
469 180 0.05
470 407 0.11
471 55 0.02
472 40 0.01
473 218 0.06
474 89 0.02
475 342 0.10
476 752 0.21
477 16 0.00
478 670 0.19
479 18 0.01
480 4 0.00
ACGTcount: A:0.32, C:0.18, G:0.14, T:0.37
Consensus pattern (475 bp):
TTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCAT
TCTTTTCAGGATTAGGCACCATAAACTTAGTCTTCTAATAAGGATACACGATATTGAAGCATTGG
CTTTGTAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGCCTAAGTTCATGCCTCAATTGTGAC
AAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTC
ATTAGGATAAATGATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTTCTT
AAAATTAAAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCGTAACAGTCTCCATTCTTTTCA
TGATTGGGAACCAAAAACACATTCCTTTCATTAAGATACATGACATTGACGCTTTGGTCTGCAAG
AAAAGCATTTCTTTCAACCG
Found at i:606397 original size:475 final size:475
Alignment explanation
Indices: 604778--607164 Score: 2896
Period size: 475 Copynumber: 5.0 Consensus size: 475
604768 CTCCCCCTTC
* * * *
604778 GGATTAATGATATTGAAGTTTTTCTTTTGCACGAAAATCTTTT-TGTTGCCCTGTTTTCATTAAA
1 GGATAAATGATATTGAAGTTTTTCTTTTGCATGAAAATCTTTTCT-TTGCCCTATTTTCCTTAAA
* ** * *
604842 ATTAAAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTTGCAGTAATCCCCATTTTTTTCATGA
65 ATTAAAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTTGTAACAGTCTCCATTTTTTTCATGA
* * * * * * *
604907 TTGGGCACCAAAAACACAATCCTTTCATTAGGTTACATGACATTGACGCTTTGGCGCCGCAAGAA
130 TTGGGAACCAAAAACACATTCCTTTAATTAGGATACATGACATTGAAGCTTTGGTGTCGCAAGAA
*
604972 AAGCATTTCTTTCGACCATTTTTGATTGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAAT
195 AAGCATTTCTTTCAACCATTTTTGATTGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAAT
*
605037 AATCATACTAATCCCTATTCTTTTCAGGATTAGGTACCATAAACTTAGTCTTCTCATAAGGATAC
260 AATCATACTAATCCCTATTCTTTTCAGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATAC
* *
605102 ACGATACTGACGCTTTGGCTGCACAAGAAAGGCTTTCTTCCCACCAATTTTTATAAAGTCTAAGT
325 ACGATACTGACGCTTTGGCTTCACAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGT
* * * * *
605167 TCGTGCCTCAATTGAGACAAACATGGATTCTTGTAATGATCTTCATTCTTTTTCTGATTAGGCAC
390 TCGTGCCTCAATTGTGACAAACATGGATTCTAG-AAAGATCTTCATTCATTTTGTGATTAGGCAC
**
605232 TACAAACACATTCTCCTTTTTA
454 TACAAACACATTCTCCTCATTA
* * * *
605254 GGATAAAAGATATTGATGATTTTCTTATTG--TGGAAATCTTTTCTTTGCCCTATTTTCCTTAAA
1 GGATAAATGATATTGAAGTTTTTCTT-TTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAA
* *
605317 ATTAAAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCGTAACAGT-TACCATTCTTTTCATG
65 ATTAAAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTTGTAACAGTCT-CCATTTTTTTCATG
* * * * *
605381 ATTGGGAACCAAAAACACATTCCTTTCATTAGGATACATGATATTAGCA-CATTGGTGTCGTAAG
129 ATTGGGAACCAAAAACACATTCCTTTAATTAGGATACATGACATT-GAAGCTTTGGTGTCGCAAG
* * ** * * * * *
605445 AAACGCATTTTTTTCAACTGTTTTTGATAGAATCAAAATTTGTCTCTTAACTAAGAAAAAAATGA
193 AAAAGCATTTCTTTCAACCATTTTTGATTGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGA
* * * * * *
605510 ATAGTAATAGTAATGCCC-ATTCTTTTCAGGAATAGGCACCATAAACTTAGTCTTCCCATAAGGG
258 ATAATCATACTAAT-CCCTATTCTTTTCAGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGA
** * * * * * * * * *
605574 TATGCGATGCTAATGCTTT-GCTTTCATAAGACAGACTTTCTTCCCTCAAAATTTGTTG--CAGT
322 TACACGATACTGACGCTTTGGC-TTCACAAGAAAGGCTTTCTTCCCAC-CAATTT-TTGTAAAGT
* * *** * ***
605636 CTAAGTTAGTGCCTCAATTGTGACGAACATGGATT-T---TTTATCCTCATTCGCATTGTGATTA
384 CTAAGTTCGTGCCTCAATTGTGACAAACATGGATTCTAGAAAGATCTTCATTCATTTTGTGATTA
** * * * * *
605697 CACACTATAAAAATATTCTCCTCAATC
449 GGCACTACAAACACATTCTCCTCATTA
* * * * *
605724 GGATAAATGAGGCCAGCATGGA-TTTTT-TTTTGCTTGCAAATCTTTTCTTTGCCCTATTTTCCT
1 GGATAAATGA---TA--TTGAAGTTTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCT
* * * * * **
605787 TAAAATCAAAGTTCATCTCTTAAATAAGGCAAGCATTGATTCTCGTAATAGTCTCTATTCCTTTC
61 TAAAATTAAAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTTGTAACAGTCTCCATTTTTTTC
* * * *
605852 ATGTTTGGGAACCAAAAACACATT-CTATTCAA-TAGGATACATGACATTGATGCTTAGGTGTCA
126 ATGATTGGGAACCAAAAACACATTCCT-TT-AATTAGGATACATGACATTGAAGCTTTGGTGTCG
* *
605915 CAAGAAAAGCATTTCTTTTAACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAAC
189 CAAGAAAAGCATTTCTTTCAACCATTTTTGATTGAATCAAAGTTTGTCTCTTAAATAAGACAAAC
* * * * *
605980 ATGAATAGTCATAATAATACCC-ATTCTTTTCAAGATTAGGCACCATAAACTTAGTTTTCTAATA
254 ATGAATAATCATACTAAT-CCCTATTCTTTTCAGGATTAGGCACCATAAACTTAGTCTTCTCATA
* ** * * * * *
606044 AGGATACATGATGTTGAAGCATTGGTTTTATAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAG
318 AGGATACACGATACTGACGCTTTGGCTTCACAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAG
* * * *
606109 CCTAAGTTCGTGCCTCAACTGTGACAAACAAGGATTCTAGAAAGATCTTCATTTATTTTGTGATT
383 TCTAAGTTCGTGCCTCAATTGTGACAAACATGGATTCTAGAAAGATCTTCATTCATTTTGTGATT
* * * *
606174 AGGAACTATAAACATATTTTCCTCATTA
448 AGGCACTACAAACACATTCTCCTCATTA
* *
606202 GGATAAATGATATTGAAGTTTTTCTTTTGCATGAAAATCTTTTCATTGCCCTATTTTTCTTAAAA
1 GGATAAATGATATTGAAGTTTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAA
* *
606267 TTAAAGTTTATCCCTTAAATAAGGCAAGAATTGATTCTTGTAACAGTCTCCATTTTTTTCATGAT
66 TTAAAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTTGTAACAGTCTCCATTTTTTTCATGAT
* * *
606332 TGGGCACCAAAAACACATTCCTTTAATTAGGATACATGAGATTGAAGCTTTGGTGCCGCAAGAAA
131 TGGGAACCAAAAACACATTCCTTTAATTAGGATACATGACATTGAAGCTTTGGTGTCGCAAGAAA
* *
606397 AGCATTTCCTTCAACCATTTTTGATTGAATCAAAGTTTGTCTCTTAAATAAGAAAAACATGAATA
196 AGCATTTCTTTCAACCATTTTTGATTGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATA
*
606462 ATCATACTAATCCCTATTCTTTTCAGGATTAGGCACCATAAACTTAGTCTTCTCATAAAGATACA
261 ATCATACTAATCCCTATTCTTTTCAGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACA
* * ** * * *
606527 GGATACTGACGCTTTAGCTTTGCCAGAAAGGCTTTCTTCCCACCAATTTCTATAAAGTCTAAGTT
326 CGATACTGACGCTTTGGCTTCACAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTT
* *
606592 CGTGCCTCAATTAG-GACAAACATAGAGTT-TAGTAATA-ATCTTCACTCA-TTTGCTGATTAGG
391 CGTGCCTCAATT-GTGACAAACATGGA-TTCTAG-AA-AGATCTTCATTCATTTTG-TGATTAGG
*
606653 CACTACAAACACATTCTCCTTATTA
451 CACTACAAACACATTCTCCTCATTA
* * *
606678 GGATAAATGATATTGATGATATTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAA
1 GGATAAATGATATTGAAGTTTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAA
* *
606743 TTAAAGTTCATCCCTTAAATAAGGCAAGCGTTGA-ACTTCGTAACAGTCTCCATTTTTTTTCATG
66 TTAAAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTT-GTAACAGTCTCCA-TTTTTTTCATG
* *
606807 ATTGGGAACCAAAAACACATTCCTTTTATTAGGATACATGACATTGACGCTTTGGTGTCGCAAGA
129 ATTGGGAACCAAAAACACATTCCTTTAATTAGGATACATGACATTGAAGCTTTGGTGTCGCAAGA
*** * *
606872 AAAGCATTTCTTTCCGGCATTTTTTATTGAATCAAAGTTTATCTCTTAAATAAGACAAACATGAA
194 AAAGCATTTCTTTCAACCATTTTTGATTGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAA
* *
606937 TAATCATACTAATCCCTACTCTTTTCTGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATA
259 TAATCATACTAATCCCTATTCTTTTCAGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATA
* *
607002 CGCGATACTGACGCTTTGGCTTCGCAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAG
324 CACGATACTGACGCTTTGGCTTCACAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAG
* * * * * * * * *
607067 TTTGTGCCTAAATTGGGACAAACATGGATTCTAGTAATAACTTCATTCATTTTCTAACTAGGCAC
389 TTCGTGCCTCAATTGTGACAAACATGGATTCTAGAAAGATCTTCATTCATTTTGTGATTAGGCAC
*
607132 TACAAACACATTC-CTCTTATTA
454 TACAAACACATTCTC-CTCATTA
607154 GGATAAATGAT
1 GGATAAATGAT
607165 TGTTAGGATC
Statistics
Matches: 1625, Mismatches: 243, Indels: 86
0.83 0.12 0.04
Matches are distributed among these distances:
470 45 0.03
472 6 0.00
473 14 0.01
474 331 0.20
475 665 0.41
476 233 0.14
477 284 0.17
478 47 0.03
ACGTcount: A:0.31, C:0.19, G:0.14, T:0.36
Consensus pattern (475 bp):
GGATAAATGATATTGAAGTTTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAA
TTAAAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTTGTAACAGTCTCCATTTTTTTCATGAT
TGGGAACCAAAAACACATTCCTTTAATTAGGATACATGACATTGAAGCTTTGGTGTCGCAAGAAA
AGCATTTCTTTCAACCATTTTTGATTGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATA
ATCATACTAATCCCTATTCTTTTCAGGATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACA
CGATACTGACGCTTTGGCTTCACAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTT
CGTGCCTCAATTGTGACAAACATGGATTCTAGAAAGATCTTCATTCATTTTGTGATTAGGCACTA
CAAACACATTCTCCTCATTA
Found at i:607565 original size:13 final size:13
Alignment explanation
Indices: 607547--607572 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
607537 TACACCAAGT
607547 ATGTATCGATACA
1 ATGTATCGATACA
607560 ATGTATCGATACA
1 ATGTATCGATACA
607573 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:607570 original size:32 final size:33
Alignment explanation
Indices: 607529--607592 Score: 94
Period size: 32 Copynumber: 2.0 Consensus size: 33
607519 TAGCCAAACT
* **
607529 TGTATCGATACACCAAGTA-TGTATCGATACAA
1 TGTATCGATACACAAAAAATTGTATCGATACAA
607561 TGTATCGATACACAAAAAATTGTATCGATACA
1 TGTATCGATACACAAAAAATTGTATCGATACA
607593 TTGGCTTGTA
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
32 16 0.57
33 12 0.43
ACGTcount: A:0.41, C:0.17, G:0.14, T:0.28
Consensus pattern (33 bp):
TGTATCGATACACAAAAAATTGTATCGATACAA
Found at i:609681 original size:475 final size:473
Alignment explanation
Indices: 608645--609684 Score: 1302
Period size: 475 Copynumber: 2.2 Consensus size: 473
608635 GAAGGCACTA
* * * *
608645 TGGTTTCGTGAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGCCTAACTTCGTGCCTCAACGGT
1 TGGTTTCGTAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAATTCGTGCCTCAACTGT
* *
608710 GACAAACATTGATTATAGTAATGATCTTCATTCATTTTGTAATTAGGCACGATAAACAAACTCTC
66 GACAAAC-TTGATTATTGTAATGATCTTCATTCATTTTGTAATTAGGCACAATAAACAAACTCTC
* * * * *
608775 CTCACTGGGATACATGATATTGATCATTTTCTTTTACATGAAAGTCTTTTCTTTGCCCTATTTTC
130 CTAACTAGGATACATGATATTGAGCATTTTCTTTTACATGAAAATCTTTTCATTGCCCTATTTTC
* * * * *
608840 TTAAAATTAAAGTTCATCGCTTAAATAAGGCAAGCAATGATTCTCATAATAGTCTGCATTGTTTT
195 TTAAAATTAAAGTTCATCCCTTAAATAAGGCAAGCAATGATCCTCATAACAGTCTCCATTATTTT
*
608905 CATGATTGGGAACCAAAAACGCATTCCTTTCATTAGGATACATGACATTGATACTTTGGTGTCAC
260 CATGATTGGGAACCAAAAACACATTCCTTTCATTAGGATACATGACATTGA-ACTTTGGTGTCAC
* * *
608970 AAGAAAAGCATTTCTTTCCGCCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACA
324 AAGAAAAGCATTTCTTTCAGCCATGTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAAAAACA
* * * * *
609035 TGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAGACTTAGTCTTCAAAAAAG
389 AGAATAGTCACACTAATCCCCATTCTTTTCAAGAATAGGCACCATAAACTTAGTCTTCAAAAAAG
609100 GATATACGACATTGAAGCAT
454 GATATACGACATTGAAGCAT
* * * * *
609120 TGGTTTCGTAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCAAAATTCGTACCTTAAGTGC
1 TGGTTTCGTAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAATTCGTGCCTCAACTGT
* * * * * * * *
609185 AACAAACATGGATTCTTGTAATGATCTTCATTTATTTTGTGATTTGGCACAATAAACATATTCTC
66 GACAAAC-TTGATTATTGTAATGATCTTCATTCATTTTGTAATTAGGCACAATAAACAAACTCTC
* * *
609250 CTAATTAGGATTA-ATGATATTGAAGC-TTTTCTTTTGCATGAAAATCTTTTCATTGCCTTATTT
130 CTAACTAGGA-TACATGATATTG-AGCATTTTCTTTTACATGAAAATCTTTTCATTGCCCTATTT
* * * *
609313 TCTTTAAAATTAATGTTTATCCCTTAAATAAGGTAAGCATTGATCCTCATAACAGTCTCCATTAT
193 TC-TTAAAATTAAAGTTCATCCCTTAAATAAGGCAAGCAATGATCCTCATAACAGTCTCCATTAT
* * **
609378 TTTTATGATTGGGAACCAAAAACACATTCCTTTCATTAGGGTACATGATGTTG-ACGTTTAGG-G
257 TTTCATGATTGGGAACCAAAAACACATTCCTTTCATTAGGATACATGACATTGAAC-TTT-GGTG
** * *
609441 TC-GTAGAAAAGGCATTTCTTTTAGCCGTGTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAA
320 TCACAAGAAAA-GCATTTCTTTCAGCCATGTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAA
* * **
609505 AAACAAGAATAGTCACATTAATCCCTATTCTTTTCAAGAATAGGCACCATAAACTTAGTCTTCCC
384 AAACAAGAATAGTCACACTAATCCCCATTCTTTTCAAGAATAGGCACCATAAACTTAGTCTTCAA
* * * * *
609570 ATAAGGATATATGATATTGATGCTT
449 AAAAGGATATACGACATTGAAGCAT
* * * *
609595 TGGTTTCAG-AAGAAAGGCTTTCTTCCC-TCAAATTTTGTTAAAGTCTAAGTTCGTGCCTCAATT
1 TGGTTTC-GTAAGAAAGGCTTTCTTCCCACCAATTTTTG-TAAAGTCTAAATTCGTGCCTCAACT
** *
609658 GTGATGAACTTAGATTTTTGTAATGAT
64 GTGACAAACTT-GATTATTGTAATGAT
609685 ATTATTGATT
Statistics
Matches: 481, Mismatches: 75, Indels: 18
0.84 0.13 0.03
Matches are distributed among these distances:
474 17 0.04
475 356 0.74
476 108 0.22
ACGTcount: A:0.31, C:0.17, G:0.15, T:0.36
Consensus pattern (473 bp):
TGGTTTCGTAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAATTCGTGCCTCAACTGT
GACAAACTTGATTATTGTAATGATCTTCATTCATTTTGTAATTAGGCACAATAAACAAACTCTCC
TAACTAGGATACATGATATTGAGCATTTTCTTTTACATGAAAATCTTTTCATTGCCCTATTTTCT
TAAAATTAAAGTTCATCCCTTAAATAAGGCAAGCAATGATCCTCATAACAGTCTCCATTATTTTC
ATGATTGGGAACCAAAAACACATTCCTTTCATTAGGATACATGACATTGAACTTTGGTGTCACAA
GAAAAGCATTTCTTTCAGCCATGTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAAAAACAAG
AATAGTCACACTAATCCCCATTCTTTTCAAGAATAGGCACCATAAACTTAGTCTTCAAAAAAGGA
TATACGACATTGAAGCAT
Found at i:610037 original size:418 final size:417
Alignment explanation
Indices: 609276--610048 Score: 949
Period size: 418 Copynumber: 1.9 Consensus size: 417
609266 ATATTGAAGC
* * * * * *
609276 TTTTCTTTTGCATGAAAATCTTTTCATTGCCTTATTTTCTTTAAAATTAATGTTTATCCCTTAAA
1 TTTTCTTTTCCATGAAAATCTTTTCATTCCCTTATTTTCTATAAAATCAAAGTTAATCCCTTAAA
* ** * * * *
609341 TAAGGTAAGCATTGATCCTCATAACAGTCTCCATTATTTTTATGATTGGGAACCAAAAACACATT
66 TAAGGGAAGCATCAATCCTCATAACAGTCTCCATTACTTTCATGACTAGGAACCAAAAACACATT
* * * * ** * ** * * **
609406 CCTTTCATTAGGGTACATGATGTTGACGTTTAGGGTCGTAGAAAAGGCATTTCTTTTAGCCGTGT
131 CCATTCAATACGATACATGACATTGACATTTAGGGTCCAAGAAAAGGCATTTCTTTCAACAATGT
* * *
609471 TTGATAGAATCAAAGTTTGTCTCTTAAATAAGAAAAACAAGAATAGTCACATTAATCCCTATTCT
196 TTGATAGAATCAAAGTTTGTCTCTTAAATAAGAAAAACAAGAATAGTCACACTAATCCATAATCT
* * * * *
609536 TTTCAAGAATAGGCACCATAAACTTAGTCTTCCCATAAGGATATATGATATTGATGCTTTGGTTT
261 TTTCAAGAATAGGCACCATAAACTTAGTCTTCCAATAAGGATACACGATATTGAAGCATTGGTTT
*
609601 CAGAAGAAAGGCTTTCTTCCCTCAAATTTTGTTAAAGTCTAAGTTCGTGCCTCAATTGTGATGAA
326 CAGAAGAAAGGCTTTCTTCCCACAAATTTTGTTAAAGTCTAAGTTCGTGCCTCAATTGTGATGAA
609666 CTTAGATTTTTGTAATGATATTATTGA
391 CTTAGATTTTTGTAATGATATTATTGA
* * *
609693 TTTTCTTTTCCTTGGAAATCTTTTCTTTCCCTTATTTTAC-ATAAAATCAAAGTTAATCCCTTAA
1 TTTTCTTTTCCATGAAAATCTTTTCATTCCCTTATTTT-CTATAAAATCAAAGTTAATCCCTTAA
* * * * *
609757 ATAAGGGATGCATCAATTCTCGTAACAGTCTCTATTCCTTTCATGACTAGGAACCAAAAACACAT
65 ATAAGGGAAGCATCAATCCTCATAACAGTCTCCATTACTTTCATGACTAGGAACCAAAAACACAT
* *
609822 TCCATTCAATACGATGCATGACATTGACATTTTGGTGTCACAAGAAAA-GCATTTCTTTCAACAA
130 TCCATTCAATACGATACATGACATTGACATTTAGG-GTC-CAAGAAAAGGCATTTCTTTCAACAA
* * * * * * *
609886 TTTTTTATAGAATTAAAGTTTGTCTCTTAAATGAGACAAACATGAATAGTCATACTAATCCATAA
193 TGTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAAAAACAAGAATAGTCACACTAATCCATAA
* * * * * *
609951 TCTTTTCAGGATTAGGCACCATATATTTAGTCTTCTAATTAGGATACACGATATTGAAGCATTGG
258 TCTTTTCAAGAATAGGCACCATAAACTTAGTCTTCCAATAAGGATACACGATATTGAAGCATTGG
* *
610016 TTTCATGAA-AAGGGCTTTCTTCCCACCAATTTT
323 TTTCA-GAAGAAAGGCTTTCTTCCCACAAATTTT
610049 TGTAAACCCT
Statistics
Matches: 292, Mismatches: 60, Indels: 7
0.81 0.17 0.02
Matches are distributed among these distances:
417 132 0.45
418 151 0.52
419 9 0.03
ACGTcount: A:0.31, C:0.17, G:0.14, T:0.38
Consensus pattern (417 bp):
TTTTCTTTTCCATGAAAATCTTTTCATTCCCTTATTTTCTATAAAATCAAAGTTAATCCCTTAAA
TAAGGGAAGCATCAATCCTCATAACAGTCTCCATTACTTTCATGACTAGGAACCAAAAACACATT
CCATTCAATACGATACATGACATTGACATTTAGGGTCCAAGAAAAGGCATTTCTTTCAACAATGT
TTGATAGAATCAAAGTTTGTCTCTTAAATAAGAAAAACAAGAATAGTCACACTAATCCATAATCT
TTTCAAGAATAGGCACCATAAACTTAGTCTTCCAATAAGGATACACGATATTGAAGCATTGGTTT
CAGAAGAAAGGCTTTCTTCCCACAAATTTTGTTAAAGTCTAAGTTCGTGCCTCAATTGTGATGAA
CTTAGATTTTTGTAATGATATTATTGA
Found at i:610620 original size:475 final size:474
Alignment explanation
Indices: 609679--613520 Score: 3639
Period size: 475 Copynumber: 8.1 Consensus size: 474
609669 AGATTTTTGT
* * * * * *
609679 AATGATATT-ATTGATTTTCTTTTCCTTGGAAATCTTTTCTTT-CCCTTATTTTACATAAAATCA
1 AATGATATTGA-TGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCC-TATTTTTCTTAAAATTA
* * * ** * * * *
609742 AAGTTAATCCCTTAAATAAGGGATGCATCAATTCTCGTAACAGTCTCTATTCCTTTCATGACTAG
64 AAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCGTAACAGTCTCCATTCTTTTCATGATTGG
* * * * ***
609807 GAACCAAAAACACATTCCATTCAATACGATGCATGACATTGACATTTTGGTGTCACAAGAAAAGC
129 GAACCAAAAACACATTCCTTTCATTAGGATACATGACATTGATGCTTTGGTGTCACAAGAAAAGC
* * * *
609872 ATTTCTTTCAACAATTTTTTATAGAATTAAAGTTTGTCTCTTAAATGAGACAAACATGAATAGTC
194 ATTTCTTTCAACAGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTC
* * * * *
609937 ATACTAATCCATAATCTTTTCAGGATTAGGCACCATATATTTAGTCTTCTAATTAGGATACACGA
259 ATACTAATCCCTATTCTTTTCAGGATTAGGCACCATAAACTTAGTCTTCTAATAAGGATACACGA
* ** * *
610002 TATTGAAGCATTGGTTTCAT-GAAAAGGGCTTTCTTCCCACCAATTTTTGTAAACCCTAAATCCG
324 TATTGAAGCATTGGTTTCGTAGAAAA--GCTTTCTT-CCACCAATTTTTGTAAAGTCTAAGTTCG
* * * * * *
610066 TGCCTCCATAGGGACAAACATAGATTCTAGTAATGATCTTCATTCATTTTGTGATTCGGTACTAT
386 TGCCTCAATTGTGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTAT
* * *
610131 AAACAAACTCTCCTCATTGGGATA
451 AAACACATTCTCCTCATTAGGATA
* *
610155 AATGATATTGATGATTTTCTTTTACATGAAAAT-TTTTCTTTGCCCTATTTTTCTTAAAACTAAA
1 AATGATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTTCTTAAAATTAAA
** * **
610219 GTTCATCTGTTAAATAAGGCAAGCATTGATTCCCACAACAGTCTCCATTCTTTTCATGATTGGGA
66 GTTCATCCCTTAAATAAGGCAAGCATTGATTCTCGTAACAGTCTCCATTCTTTTCATGATTGGGA
* * ** *
610284 ACCAAAAACATATTCCTTTCATTAGGATACTTGACATTGATGCTTTGGCATCGCAAGGAAAA-CA
131 ACCAAAAACACATTCCTTTCATTAGGATACATGACATTGATGCTTTGGTGTCACAA-GAAAAGCA
* * * *
610348 TTTCTTTCTACAGTTTTTGATAGAATCAAAGTTTGTTTCTTAAATAAGACAAACAAGAATAGCCA
195 TTTCTTTCAACAGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCA
* *
610413 TACTAATCCTTATTCTTTTCAGGATTAGGCACCATAAACTTAGTCTTCAAATAAGGATACACGAT
260 TACTAATCCCTATTCTTTTCAGGATTAGGCACCATAAACTTAGTCTTCTAATAAGGATACACGAT
** * *
610478 ATTGAAGCATTGGTTTCGTACGAAAAGCTTTCTTCCAATGAATTTTTGTAAAGCCTAAGTTTGTG
325 ATTGAAGCATTGGTTTCGTA-GAAAAGCTTTCTTCC-ACCAATTTTTGTAAAGTCTAAGTTCGTG
* * * * *
610543 CCTCAACTATGATAAACATGGAATCTAGTAATGATCTTCATTTATTTTGTGATTAGGCA-TAATA
388 CCTCAATTGTGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACT-ATA
* * * *
610607 AGCATATTCTCCTCAATAGGATT
452 AACACATTCTCCTCATTAGGATA
* * *
610630 AATGATATTGAAGGTTTTCTTTTGCATGAAAATCTTTTCGTTGCCCTATTTTTCTTAAAATTAAA
1 AATGATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTTCTTAAAATTAAA
* * * *
610695 ATTCATCCCTTAAATAAGGCAAGCATTGATTCTTGTAATAGTCACCAGTT-TTTTCATGATTGGG
66 GTTCATCCCTTAAATAAGGCAAGCATTGATTCTCGTAACAGTCTCCA-TTCTTTTCATGATTGGG
* * * ** **
610759 CACCAAAAACGCATTCCTTTCATTAGGTTACATGACATTGACACTTTGGTGTTGCAAG-AAAGCA
130 AACCAAAAACACATTCCTTTCATTAGGATACATGACATTGATGCTTTGGTGTCACAAGAAAAGCA
* * * *
610823 TTTCTTTCAACTA-TTTTTGATTGAATCAAAGTTTGTCTCTTAATTCAGACAAACATGAATATTC
195 TTTCTTTCAAC-AGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTC
* * * *
610887 ATACTAATCCCTATTCCTTTCAGGATTAGGCACCATAAACTTAGTCTTCTTAGAAAGATACACGA
259 ATACTAATCCCTATTCTTTTCAGGATTAGGCACCATAAACTTAGTCTTCTAATAAGGATACACGA
* * * * * * * * *
610952 TACTGACGCTTTCGCTTCGTAAGAAAGGCTTTCTTCTCGCCAATTTCTATAAAGTCTAAGTTCGT
324 TATTGAAGCATTGGTTTCGT-AGAAAAGCTTTCTTC-CACCAATTTTTGTAAAGTCTAAGTTCGT
* * * * * * * *
611017 GCCTCAATTGAGACAAACATGGATTCTTGTAATGATCTTCGTTCTTTTTCTAATTAGGCAGTACA
387 GCCTCAATTGTGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATA
* * * **
611082 AAAACATTGTCTTTGTTAGGATA
452 AACACATTCTCCTCATTAGGATA
* * *
611105 AAAGATATTGATGATTTTCTTTTGCAT-AGAAATCTTTTCTTTACCCTATTTTCCTTAAAATTAA
1 AATGATATTGATGATTTTCTTTTGCATGA-AAATCTTTTCTTTGCCCTATTTTTCTTAAAATTAA
* * * * * *
611169 AGTTCATCCCTTAAATAAGGTAGGCGTTGATTCTCATAATAGTCACCATTCTTTTCATGATTGGG
65 AGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCGTAACAGTCTCCATTCTTTTCATGATTGGG
* *
611234 ATCCAAAAACACATTCCTTTCATTAGGATACATGACAATGA--CATATTGGTGTCACAAGAAAAG
130 AACCAAAAACACATTCCTTTCATTAGGATACATGACATTGATGC-T-TTGGTGTCACAAGAAAAG
* ** *
611297 CATTTCTTTCAACCGTTTTTGGCAGAATCAAAGTTTGTCTCTTAACTAAGACAAACATGAATAGT
193 CATTTCTTTCAACAGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGT
* * * * ** *
611362 AATAGTAATGCCC-ATTCTTTTCAGGAATAGGCACCAAAAACTTAGTCTTCCCATAAGGATATAC
258 CATACTAAT-CCCTATTCTTTTCAGGATTAGGCACCATAAACTTAGTCTTCTAATAAGGATACAC
* *** * * * *
611426 GATAGT-AATGC-TTTACTTCATA-AAGAGGGCTTTTTTCC-CTCAAATTTTGTTAAAGTCTAAG
322 GATATTGAA-GCATTGGTTTCGTAGAA-A-AGCTTTCTTCCAC-CAATTTTTG-TAAAGTCTAAG
* * * * ** * * **
611487 TTAGTGCCTCAATTGTGACGAACATAGATAT-T--T--T-ATCGTCATTCGCTTTATGATCACAC
382 TTCGTGCCTCAATTGTGACAAACATGGAT-TCTAGTAATGATCTTCATTCATTTTGTGATTAGGC
* * *
611546 ACTATAAAAACATTCTTCTCAATAGGATA
446 ACTATAAACACATTCTCCTCATTAGGATA
* * * *
611575 AATGATATT-ATTGATTTTTTTTTTGCTTGAAAATCATTTCTTTGCCCTA-TTTTCTTTAAAATC
1 AATGATATTGA-TGA-TTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTTC-TTAAAATT
* * * * * * *
611638 AAAGTTTA-CCACTTAAATAAGGCAAGCATTAGCTT-TCGTAATAATCTTCATTCCTTTCAAGAT
63 AAAGTTCATCC-CTTAAATAAGGCAAGCATT-GATTCTCGTAACAGTCTCCATTCTTTTCATGAT
* * * * * * *
611701 TGGGAACCAAAAACACAATCCATTCAATAGTATACATGACATTGATGGTTAGGTGTCGCAAGAAA
126 TGGGAACCAAAAACACATTCCTTTCATTAGGATACATGACATTGATGCTTTGGTGTCACAAGAAA
*
611766 AGCATTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATA
191 AGCATTTCTTTCAACAGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATA
* * * ** *
611831 GTCAGACTAATCCCCATTTTTTTCAGGATTAGGTGCCATAAACTTAATCTTCTAATAAGGATACA
256 GTCATACTAATCCCTATTCTTTTCAGGATTAGGCACCATAAACTTAGTCTTCTAATAAGGATACA
* * * *
611896 CGATATTGAAGCATTGGTTTAGTAGGAAAAGCTTTCTTCCCACCAATATTTGTAATGCCTGAA-T
321 CGATATTGAAGCATTGGTTTCGTA-GAAAAGCTTTCTT-CCACCAATTTTTGTAAAGTCT-AAGT
* * * * * *
611960 TCATGCCTCAACTGTGACAAATAAGGATTCTAGTAATGATCTTCATTTATTTTGTAATTAGGCAC
383 TCGTGCCTCAATTGTGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCAC
* * *
612025 TATAAACATATTTTCCTCAATAGGATA
448 TATAAACACATTCTCCTCATTAGGATA
* * * * * * *
612052 GATGATATTGAAGTTTTTCTTTTGCATGGAAATCTTTTCATTGCCTTATTTTTCGTAAAATTAAA
1 AATGATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTTCTTAAAATTAAA
* * * * * *
612117 GTTTATCCCTTAAATAAGGCAAGCATTGATTCTTGCAATAGTCTCCATTTTTTTCATAATTGGG-
66 GTTCATCCCTTAAATAAGGCAAGCATTGATTCTCGTAACAGTCTCCATTCTTTTCATGATTGGGA
* * * * *
612181 -CCTAAAAAACGCATTCCTTTCATTAAGATACGTGACATTGATGCTTTGGTGCCGCAAGAAAAGC
131 ACC--AAAAACACATTCCTTTCATTAGGATACATGACATTGATGCTTTGGTGTCACAAGAAAAGC
* * * * * *
612245 ATTGCTTTCAACCGTTGTTGATTGAATCAAAGTTTATCTCTTATAA-AAGA-AAATCATGAATAA
194 ATTTCTTTCAACAGTTTTTGATAGAATCAAAGTTTGTCTCTTA-AATAAGACAAA-CATGAATAG
* * *
612308 CCATACTAATCCCTATTATTTTTAGGATTAGGCACCATAAACTTAGTCTTC--ATAAGGATACAC
257 TCATACTAATCCCTATTCTTTTCAGGATTAGGCACCATAAACTTAGTCTTCTAATAAGGATACAC
** * * *** * * * * *
612371 GATCCTGATGCTTTCACTTAGCAAGAAAGGCTTT-TTACCCACCAATTTCTATAAAGTCTAAGTT
322 GATATTGAAGCATTGGTTTCG-TAGAAAAGCTTTCTT--CCACCAATTTTTGTAAAGTCTAAGTT
* * * * *** * *
612435 CGTACCTCATTTGGGACAAACATGGATTCTAGTAATAATCTTTGCTCATTTTTTAATTAGGCACT
384 CGTGCCTCAATTGTGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACT
** * * * *
612500 GCAAGCACATTCTCTTTATTAAGATA
449 ATAAACACATTCTCCTCATTAGGATA
* * *
612526 AATGATATTGATGATATTCTTTTGCATAAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATTAAA
1 AATGATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTTCTTAAAATTAAA
* * * * * *
612591 G-T--TCCCTTAAATACGGCAGGCATTGATCCTCGTAACAGTCTCCTTTTTCTTTTCCTCATTGG
66 GTTCATCCCTTAAATAAGGCAAGCATTGATTCTCGTAACAGTCTCC--ATTCTTTTCATGATTGG
* * * * * *
612653 GAACCATAAACATATTCGC-TTCATTAGGACAAAAGACATTGATGCTTTGGGGTCACAAGAAAAG
129 GAACCAAAAACACATTC-CTTTCATTAGGATACATGACATTGATGCTTTGGTGTCACAAGAAAAG
* * * * * *
612717 CATTTATTTTAGCGGTTTTTGATCA-AATCAAAGTTTGTCTCTTAAATAAAAAAAAACATGAATA
193 CATTTCTTTCAACAGTTTTTGAT-AGAATCAAAGTTTGTCTCTTAAAT-AAGACAAACATGAATA
* * * * * **
612781 GTCACACTAATCCCCTTTTTTTTTTCAAGAATAGGCACCATAAACTTAGTCTTCCCATAAGGATA
256 GTCATACTAAT-CCC-TATTCTTTTCAGGATTAGGCACCATAAACTTAGTCTTCTAATAAGGATA
* * * * * *
612846 TACGATATTGATGCTTTGGTTTCGTAAAAAAGGCTTTCTTCCTTCAAATTTTCT-TAAAGTCTAA
319 CACGATATTGAAGCATTGGTTTCGTAGAAAA-GCTTTCTTCC-ACCAATTTT-TGTAAAGTCTAA
* * * * * * ** * **
612910 GTTCGGGCCTCAATTGTGACGAACATAGATTTTTGTAATGATCTTCCTTCGCTTTGTGGTTACTC
381 GTTCGTGCCTCAATTGTGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGC
*
612975 ACTATAAGA-ACATTCTCCTCATAAGGATA
446 ACTATAA-ACACATTCTCCTCATTAGGATA
* * * * * * *
613004 AATAATATT-ATTGATTTTCTTTTCCTTGGAAATCTTTTCTTT-CTCTTATTTTTCATAAAATCA
1 AATGATATTGA-TGATTTTCTTTTGCATGAAAATCTTTTCTTTGC-CCTATTTTTCTTAAAATTA
* * * *
613067 AAGTTAATCCCTTAAATAAGG-AAGGCATTGATTCTCATAACAGTCTCTATTCCTTTCATGATTG
64 AAGTTCATCCCTTAAATAAGGCAA-GCATTGATTCTCGTAACAGTCTCCATTCTTTTCATGATTG
* * * *
613131 GGAACCAAAAACACATTTCATTCAATAGGATACATGACATTGACGCTTTGGTGTCACAAGAAAAG
128 GGAACCAAAAACACATTCCTTTCATTAGGATACATGACATTGATGCTTTGGTGTCACAAGAAAAG
* * * * * *
613196 CATTTCTTTCTACAATTTTTTATAGAATCAAAGTTTGTCCCTTAAATGAGACAAACATGAATAAT
193 CATTTCTTTCAACAGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGT
* * * * *
613261 CACACTAATCCCTAATCTTTTCAGGATTAGGCACCATATATTTAGTCTTCTAATTAGGATACACG
258 CATACTAATCCCTATTCTTTTCAGGATTAGGCACCATAAACTTAGTCTTCTAATAAGGATACACG
* * *
613326 ATATTGAAGCATTGGTTT--T-----A-------T----GAA-------AAAGCCTAAATTCGTG
323 ATATTGAAGCATTGGTTTCGTAGAAAAGCTTTCTTCCACCAATTTTTGTAAAGTCTAAGTTCGTG
** * * * *
613366 CCTCAACGGTTACAAACATAGATTCTAGTAATGATCTTGATTCATTTTGTGATTAGGCTCTATAA
388 CCTCAATTGTGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAA
* *
613431 ACAAACTCTCCTCATTAGGATA
453 ACACATTCTCCTCATTAGGATA
* * * * *
613453 AATGATACTGATGATTTTCTTTTACAAGAAAATCTTTTCTTTTCCCTATTTTCCTTAAAATTAAA
1 AATGATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTTCTTAAAATTAAA
613518 GTT
66 GTT
613521 TGTAGACACC
Statistics
Matches: 2744, Mismatches: 533, Indels: 205
0.79 0.15 0.06
Matches are distributed among these distances:
448 1 0.00
449 135 0.05
450 2 0.00
456 2 0.00
461 1 0.00
469 2 0.00
470 57 0.02
471 289 0.11
472 51 0.02
473 117 0.04
474 225 0.08
475 839 0.31
476 608 0.22
477 81 0.03
478 192 0.07
479 107 0.04
480 1 0.00
481 34 0.01
ACGTcount: A:0.32, C:0.18, G:0.14, T:0.37
Consensus pattern (474 bp):
AATGATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTTCTTAAAATTAAA
GTTCATCCCTTAAATAAGGCAAGCATTGATTCTCGTAACAGTCTCCATTCTTTTCATGATTGGGA
ACCAAAAACACATTCCTTTCATTAGGATACATGACATTGATGCTTTGGTGTCACAAGAAAAGCAT
TTCTTTCAACAGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCAT
ACTAATCCCTATTCTTTTCAGGATTAGGCACCATAAACTTAGTCTTCTAATAAGGATACACGATA
TTGAAGCATTGGTTTCGTAGAAAAGCTTTCTTCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCT
CAATTGTGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACA
CATTCTCCTCATTAGGATA
Found at i:613831 original size:19 final size:18
Alignment explanation
Indices: 613805--613873 Score: 76
Period size: 19 Copynumber: 4.0 Consensus size: 18
613795 AAATTCAACG
613805 GTTTGTATCGATACATAA
1 GTTTGTATCGATACATAA
613823 GTGTTGTATCGATAC--AA
1 GT-TTGTATCGATACATAA
*
613840 ---TGTATCGATACATAT
1 GTTTGTATCGATACATAA
613855 GTATTGTATCGATACATAA
1 GT-TTGTATCGATACATAA
613874 TTAGCTACTG
Statistics
Matches: 42, Mismatches: 2, Indels: 13
0.74 0.04 0.23
Matches are distributed among these distances:
13 11 0.26
15 1 0.02
17 2 0.05
18 2 0.05
19 26 0.62
ACGTcount: A:0.33, C:0.12, G:0.17, T:0.38
Consensus pattern (18 bp):
GTTTGTATCGATACATAA
Found at i:613845 original size:13 final size:14
Alignment explanation
Indices: 613827--613858 Score: 57
Period size: 13 Copynumber: 2.4 Consensus size: 14
613817 ACATAAGTGT
613827 TGTATCGATACA-A
1 TGTATCGATACATA
613840 TGTATCGATACATA
1 TGTATCGATACATA
613854 TGTAT
1 TGTAT
613859 TGTATCGATA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 12 0.67
14 6 0.33
ACGTcount: A:0.34, C:0.12, G:0.16, T:0.38
Consensus pattern (14 bp):
TGTATCGATACATA
Found at i:613849 original size:32 final size:32
Alignment explanation
Indices: 613808--613870 Score: 108
Period size: 32 Copynumber: 2.0 Consensus size: 32
613798 TTCAACGGTT
*
613808 TGTATCGATACATAAGTGTTGTATCGATACAA
1 TGTATCGATACATAAGTATTGTATCGATACAA
*
613840 TGTATCGATACATATGTATTGTATCGATACA
1 TGTATCGATACATAAGTATTGTATCGATACA
613871 TAATTAGCTA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 29 1.00
ACGTcount: A:0.33, C:0.13, G:0.17, T:0.37
Consensus pattern (32 bp):
TGTATCGATACATAAGTATTGTATCGATACAA
Found at i:613918 original size:20 final size:19
Alignment explanation
Indices: 613893--613946 Score: 72
Period size: 20 Copynumber: 2.7 Consensus size: 19
613883 GCCAAGAAAA
*
613893 TGTATCGATACATTACTCAT
1 TGTATCGATACATGA-TCAT
*
613913 TGTATCGATACACTGATCTT
1 TGTATCGATACA-TGATCAT
613933 TGTATCGATACATG
1 TGTATCGATACATG
613947 CAGGCAAATT
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
19 2 0.06
20 27 0.87
21 2 0.06
ACGTcount: A:0.28, C:0.19, G:0.15, T:0.39
Consensus pattern (19 bp):
TGTATCGATACATGATCAT
Found at i:614897 original size:20 final size:20
Alignment explanation
Indices: 614860--614898 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
614850 ACAACCTTGA
*
614860 TCATGCATTTTTACCATGTT
1 TCATGCATTTATACCATGTT
*
614880 TCATGCATTTATAGCATGT
1 TCATGCATTTATACCATGT
614899 CCAGCACCTC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.23, C:0.18, G:0.13, T:0.46
Consensus pattern (20 bp):
TCATGCATTTATACCATGTT
Done.