Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold1741
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 92496
ACGTcount: A:0.30, C:0.20, G:0.19, T:0.31
Found at i:3222 original size:20 final size:20
Alignment explanation
Indices: 3179--3252 Score: 76
Period size: 20 Copynumber: 3.6 Consensus size: 20
3169 TGGGTGGTTT
***
3179 TGTATCGATACATTTCAGGCA
1 TGTATCGATACA-TTCACTAA
*
3200 TGTATCGATACATTCACTTA
1 TGTATCGATACATTCACTAA
*
3220 TGTATTGATACATTCACTAA
1 TGTATCGATACATTCACTAA
*
3240 TTGTATCAATACA
1 -TGTATCGATACA
3253 AATCATAGAA
Statistics
Matches: 45, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
20 23 0.51
21 22 0.49
ACGTcount: A:0.32, C:0.18, G:0.12, T:0.38
Consensus pattern (20 bp):
TGTATCGATACATTCACTAA
Found at i:5722 original size:13 final size:13
Alignment explanation
Indices: 5704--5729 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
5694 TACAGCAAGT
5704 ATGTATCGATACA
1 ATGTATCGATACA
5717 ATGTATCGATACA
1 ATGTATCGATACA
5730 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:7793 original size:15 final size:15
Alignment explanation
Indices: 7773--7803 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
7763 TAAAAATGTC
*
7773 CAAAATGAGGAAGCT
1 CAAAATGAAGAAGCT
7788 CAAAATGAAGAAGCT
1 CAAAATGAAGAAGCT
7803 C
1 C
7804 CAAACGAAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.48, C:0.16, G:0.23, T:0.13
Consensus pattern (15 bp):
CAAAATGAAGAAGCT
Found at i:9903 original size:13 final size:13
Alignment explanation
Indices: 9885--9923 Score: 69
Period size: 13 Copynumber: 3.0 Consensus size: 13
9875 ACATTTTTCT
9885 TTGTATCGATACA
1 TTGTATCGATACA
*
9898 TTGTATTGATACA
1 TTGTATCGATACA
9911 TTGTATCGATACA
1 TTGTATCGATACA
9924 GGGTGATTAT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
13 24 1.00
ACGTcount: A:0.31, C:0.13, G:0.15, T:0.41
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:10068 original size:21 final size:21
Alignment explanation
Indices: 10044--10090 Score: 55
Period size: 21 Copynumber: 2.3 Consensus size: 21
10034 AAATCTTTTG
10044 CAAAAT-ACTT-GTTTTTCACTT
1 CAAAATAACTTCGTTTTTCA--T
10065 C-AAATAACTTCGTTTTTCAT
1 CAAAATAACTTCGTTTTTCAT
10085 CAAAAT
1 CAAAAT
10091 TAGCGTCAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 6
0.79 0.00 0.21
Matches are distributed among these distances:
20 6 0.26
21 9 0.39
22 8 0.35
ACGTcount: A:0.34, C:0.19, G:0.04, T:0.43
Consensus pattern (21 bp):
CAAAATAACTTCGTTTTTCAT
Found at i:10087 original size:20 final size:19
Alignment explanation
Indices: 10046--10088 Score: 52
Period size: 20 Copynumber: 2.2 Consensus size: 19
10036 ATCTTTTGCA
10046 AAATACTTGTTTTTCACTTC
1 AAATACTTGTTTTTCAC-TC
10066 AAATAACTTCGTTTTTCA-TC
1 AAAT-ACTT-GTTTTTCACTC
10086 AAA
1 AAA
10089 ATTAGCGTCA
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
20 9 0.43
21 4 0.19
22 8 0.38
ACGTcount: A:0.33, C:0.19, G:0.05, T:0.44
Consensus pattern (19 bp):
AAATACTTGTTTTTCACTC
Found at i:12073 original size:20 final size:20
Alignment explanation
Indices: 12030--12086 Score: 69
Period size: 20 Copynumber: 2.8 Consensus size: 20
12020 ATACAATTAG
* *
12030 TGAATGTATCAATACATAAG
1 TGAATGTATCGATACATAAC
**
12050 TGAATGTATCGATACATGCC
1 TGAATGTATCGATACATAAC
12070 TGAAATGTATCGATACA
1 TG-AATGTATCGATACA
12087 AAACCACCCA
Statistics
Matches: 32, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
20 18 0.56
21 14 0.44
ACGTcount: A:0.39, C:0.14, G:0.18, T:0.30
Consensus pattern (20 bp):
TGAATGTATCGATACATAAC
Found at i:20468 original size:13 final size:13
Alignment explanation
Indices: 20450--20475 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
20440 ATATTTTTTG
20450 TGTATCGATACAT
1 TGTATCGATACAT
20463 TGTATCGATACAT
1 TGTATCGATACAT
20476 ATTTTGTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:20486 original size:32 final size:33
Alignment explanation
Indices: 20429--20493 Score: 114
Period size: 32 Copynumber: 2.0 Consensus size: 33
20419 TACAAGCCAA
20429 TGTATCGATACATATTTTTTGTGTATCGATACAT
1 TGTATCGATACATA-TTTTTGTGTATCGATACAT
20463 TGTATCGATACATA-TTTTGTGTATCGATACA
1 TGTATCGATACATATTTTTGTGTATCGATACA
20494 AGTTTGGCTA
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
32 17 0.55
34 14 0.45
ACGTcount: A:0.28, C:0.12, G:0.15, T:0.45
Consensus pattern (33 bp):
TGTATCGATACATATTTTTGTGTATCGATACAT
Found at i:20487 original size:19 final size:19
Alignment explanation
Indices: 20429--20493 Score: 70
Period size: 19 Copynumber: 3.6 Consensus size: 19
20419 TACAAGCCAA
20429 TGTATCGATACATATTTTTTG
1 TGTATCGATACATA--TTTTG
20450 TGTATCGATAC--A---T-
1 TGTATCGATACATATTTTG
20463 TGTATCGATACATATTTTG
1 TGTATCGATACATATTTTG
20482 TGTATCGATACA
1 TGTATCGATACA
20494 AGTTTGGCTA
Statistics
Matches: 38, Mismatches: 0, Indels: 14
0.73 0.00 0.27
Matches are distributed among these distances:
13 11 0.29
14 1 0.03
15 1 0.03
18 1 0.03
19 13 0.34
21 11 0.29
ACGTcount: A:0.28, C:0.12, G:0.15, T:0.45
Consensus pattern (19 bp):
TGTATCGATACATATTTTG
Found at i:23041 original size:13 final size:13
Alignment explanation
Indices: 23023--23060 Score: 67
Period size: 13 Copynumber: 2.9 Consensus size: 13
23013 ATAATCCCCC
23023 TGTATCGATACAG
1 TGTATCGATACAG
*
23036 TGTATCGATACAT
1 TGTATCGATACAG
23049 TGTATCGATACA
1 TGTATCGATACA
23061 AAGAAAAATG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 24 1.00
ACGTcount: A:0.32, C:0.16, G:0.18, T:0.34
Consensus pattern (13 bp):
TGTATCGATACAG
Found at i:25160 original size:15 final size:15
Alignment explanation
Indices: 25140--25170 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
25130 ATTTTGTTTG
*
25140 GAGCTTCTTCATTTT
1 GAGCTTCCTCATTTT
25155 GAGCTTCCTCATTTT
1 GAGCTTCCTCATTTT
25170 G
1 G
25171 GACATTTTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.13, C:0.23, G:0.16, T:0.48
Consensus pattern (15 bp):
GAGCTTCCTCATTTT
Found at i:27001 original size:21 final size:21
Alignment explanation
Indices: 26972--27016 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
26962 AAGTTTTTAT
*
26972 TTTTCTTAGCTAAC-TCATTA
1 TTTTCTTAGCCAACTTCATTA
*
26992 TTTTCATTAGCCAACTTCTTTA
1 TTTTC-TTAGCCAACTTCATTA
27014 TTT
1 TTT
27017 CAACTTGCAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 5 0.24
21 8 0.38
22 8 0.38
ACGTcount: A:0.22, C:0.20, G:0.04, T:0.53
Consensus pattern (21 bp):
TTTTCTTAGCCAACTTCATTA
Found at i:29770 original size:51 final size:51
Alignment explanation
Indices: 29704--29922 Score: 253
Period size: 51 Copynumber: 4.3 Consensus size: 51
29694 TGAAAATAAT
* ***
29704 GGGGTTGGAGTATCCCCGATTATGAGAAATCCATATTTTAGAAATAAGGTC
1 GGGGTTGGAGTATCCCCGATTATGAGAAATCAATATTTTAGAAATAAAACC
* * * * *
29755 GGGGTTGAAGTATCCCCGATTGTGAGAAATCAACATTTTGGAAATAAAGCC
1 GGGGTTGGAGTATCCCCGATTATGAGAAATCAATATTTTAGAAATAAAACC
* * * * *
29806 GGGGTTGGAGTATCCCCGATGA--AAAAATCGATGTTTTAGAAATAAAATC
1 GGGGTTGGAGTATCCCCGATTATGAGAAATCAATATTTTAGAAATAAAACC
* * * * *
29855 GAGATTGGAATATCCCCGATTATCAGAAATTAATATTTTAGAAATAAAACC
1 GGGGTTGGAGTATCCCCGATTATGAGAAATCAATATTTTAGAAATAAAACC
29906 GGGGTTGGAGTATCCCC
1 GGGGTTGGAGTATCCCC
29923 TCGAAAATAA
Statistics
Matches: 137, Mismatches: 29, Indels: 4
0.81 0.17 0.02
Matches are distributed among these distances:
49 38 0.28
51 99 0.72
ACGTcount: A:0.34, C:0.15, G:0.24, T:0.27
Consensus pattern (51 bp):
GGGGTTGGAGTATCCCCGATTATGAGAAATCAATATTTTAGAAATAAAACC
Found at i:29883 original size:100 final size:101
Alignment explanation
Indices: 29704--29922 Score: 280
Period size: 100 Copynumber: 2.2 Consensus size: 101
29694 TGAAAATAAT
* * ** * *
29704 GGGGTTGGAGTATCCCCGATTATGAGAAATCCATATTTTAGAAATAAGGTCGGGGTTGAAGTATC
1 GGGGTTGGAGTATCCCCGATGA-GAAAAATCCATATTTTAGAAATAAAATCGAGATTGAAGTATC
* * * *
29769 CCCGATTGTGAGAAATCAACATTTTGGAAATAAAGCC
65 CCCGATTATCAGAAATCAACATTTTAGAAATAAAACC
* *
29806 GGGGTTGGAGTATCCCCGATGA-AAAAATCGATGTTTTAGAAATAAAATCGAGATTGGAA-TATC
1 GGGGTTGGAGTATCCCCGATGAGAAAAATCCATATTTTAGAAATAAAATCGAGATT-GAAGTATC
* *
29869 CCCGATTATCAGAAATTAATATTTTAGAAATAAAACC
65 CCCGATTATCAGAAATCAACATTTTAGAAATAAAACC
29906 GGGGTTGGAGTATCCCC
1 GGGGTTGGAGTATCCCC
29923 TCGAAAATAA
Statistics
Matches: 102, Mismatches: 14, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
100 78 0.76
101 3 0.03
102 21 0.21
ACGTcount: A:0.34, C:0.15, G:0.24, T:0.27
Consensus pattern (101 bp):
GGGGTTGGAGTATCCCCGATGAGAAAAATCCATATTTTAGAAATAAAATCGAGATTGAAGTATCC
CCGATTATCAGAAATCAACATTTTAGAAATAAAACC
Found at i:29976 original size:76 final size:76
Alignment explanation
Indices: 29881--30157 Score: 342
Period size: 76 Copynumber: 3.6 Consensus size: 76
29871 CGATTATCAG
*
29881 AAATTAATATTTTAGAAATAAAACCGGGGTTGGAGTATCCCCTCGAAAATAACGGGGTTGGAGTA
1 AAATTAATATTTTAGAAATAAAACCAGGGTTGGAGTATCCCCTCGAAAATAACGGGGTTGGAGTA
29946 TCCCCGATGAA
66 TCCCCGATGAA
* * * * * *
29957 AAATTGATTTTTTAGAAATAAAATCAGGATTGGAGTATCCCCTCGGAAGTAACGGGGTTGGAGTA
1 AAATTAATATTTTAGAAATAAAACCAGGGTTGGAGTATCCCCTCGAAAATAACGGGGTTGGAGTA
*
30022 TCCCCGATTATGAG
66 TCCCCG---ATGAA
* *
30036 AGATTAATATTTTAGAAATAAAACCGGGGTTGGAGTATCCCCTC-AGAAATAACGGGGTTGGAGT
1 AAATTAATATTTTAGAAATAAAACCAGGGTTGGAGTATCCCCTCGA-AAATAACGGGGTTGGAGT
30100 ATCCCCGATGAAAGGA
65 ATCCCCGATG--A--A
** *
30116 AAATTGGTGTTTT-GAAAATAAAACCAGGGTTGGAGTATCCCC
1 AAATTAATATTTTAG-AAATAAAACCAGGGTTGGAGTATCCCC
30158 AATTGTGGAA
Statistics
Matches: 170, Mismatches: 22, Indels: 14
0.83 0.11 0.07
Matches are distributed among these distances:
76 67 0.39
78 1 0.01
79 67 0.39
80 35 0.21
ACGTcount: A:0.34, C:0.15, G:0.25, T:0.26
Consensus pattern (76 bp):
AAATTAATATTTTAGAAATAAAACCAGGGTTGGAGTATCCCCTCGAAAATAACGGGGTTGGAGTA
TCCCCGATGAA
Found at i:30051 original size:155 final size:157
Alignment explanation
Indices: 29859--30157 Score: 471
Period size: 155 Copynumber: 1.9 Consensus size: 157
29849 AAAATCGAGA
29859 TTGGAATATCCCCGATTATCAGAAATTAATATTTTAGAAATAAAACCGGGGTTGGAGTATCCCCT
1 TTGGAATATCCCCGATTATCAGAAATTAATATTTTAGAAATAAAACCGGGGTTGGAGTATCCCCT
* *
29924 C-GAAAATAACGGGGTTGGAGTATCCCCGATG-A-AAAATTGAT-TTTTTAGAAATAAAATCAGG
66 CAG-AAATAACGGGGTTGGAGTATCCCCGATGAAGAAAATTGATGTTTTGA-AAATAAAACCAGG
29985 ATTGGAGTATCCCCTCGGAAGTAACGGGG
129 ATTGGAGTATCCCCTCGGAAGTAACGGGG
* * *
30014 TTGGAGTATCCCCGATTATGAGAGATTAATATTTTAGAAATAAAACCGGGGTTGGAGTATCCCCT
1 TTGGAATATCCCCGATTATCAGAAATTAATATTTTAGAAATAAAACCGGGGTTGGAGTATCCCCT
*
30079 CAGAAATAACGGGGTTGGAGTATCCCCGATGAAAGGAAAATTGGTGTTTTGAAAATAAAACCAGG
66 CAGAAATAACGGGGTTGGAGTATCCCCGATG-AA-GAAAATTGATGTTTTGAAAATAAAACCAGG
*
30144 GTTGGAGTATCCCC
129 ATTGGAGTATCCCC
30158 AATTGTGGAA
Statistics
Matches: 131, Mismatches: 7, Indels: 8
0.90 0.05 0.05
Matches are distributed among these distances:
155 91 0.69
156 1 0.01
157 1 0.01
159 33 0.25
160 5 0.04
ACGTcount: A:0.33, C:0.15, G:0.24, T:0.27
Consensus pattern (157 bp):
TTGGAATATCCCCGATTATCAGAAATTAATATTTTAGAAATAAAACCGGGGTTGGAGTATCCCCT
CAGAAATAACGGGGTTGGAGTATCCCCGATGAAGAAAATTGATGTTTTGAAAATAAAACCAGGAT
TGGAGTATCCCCTCGGAAGTAACGGGG
Found at i:30077 original size:79 final size:79
Alignment explanation
Indices: 29859--30157 Score: 374
Period size: 79 Copynumber: 3.8 Consensus size: 79
29849 AAAATCGAGA
* *
29859 TTGGAATATCCCCGATTATCAGAAATTAATATTTTAGAAATAAAACCGGGGTTGGAGTATCCCCT
1 TTGGAGTATCCCCGATTATGAGAAATTAATATTTTAGAAATAAAACCGGGGTTGGAGTATCCCCT
*
29924 CGAAAATAACGGGG
66 CGGAAATAACGGGG
* * * * * *
29938 TTGGAGTATCCCCG---ATGAAAAATTGATTTTTTAGAAATAAAATCAGGATTGGAGTATCCCCT
1 TTGGAGTATCCCCGATTATGAGAAATTAATATTTTAGAAATAAAACCGGGGTTGGAGTATCCCCT
*
30000 CGGAAGTAACGGGG
66 CGGAAATAACGGGG
*
30014 TTGGAGTATCCCCGATTATGAGAGATTAATATTTTAGAAATAAAACCGGGGTTGGAGTATCCCCT
1 TTGGAGTATCCCCGATTATGAGAAATTAATATTTTAGAAATAAAACCGGGGTTGGAGTATCCCCT
*
30079 CAGAAATAACGGGG
66 CGGAAATAACGGGG
* * ** * *
30093 TTGGAGTATCCCCGATGA-AAGGAAAATTGGTGTTTT-GAAAATAAAACCAGGGTTGGAGTATCC
1 TTGGAGTATCCCCGATTATGA-G-AAATTAATATTTTAG-AAATAAAACCGGGGTTGGAGTATCC
30156 CC
63 CC
30158 AATTGTGGAA
Statistics
Matches: 188, Mismatches: 26, Indels: 11
0.84 0.12 0.05
Matches are distributed among these distances:
76 67 0.36
78 1 0.01
79 85 0.45
80 35 0.19
ACGTcount: A:0.33, C:0.15, G:0.24, T:0.27
Consensus pattern (79 bp):
TTGGAGTATCCCCGATTATGAGAAATTAATATTTTAGAAATAAAACCGGGGTTGGAGTATCCCCT
CGGAAATAACGGGG
Found at i:30157 original size:52 final size:51
Alignment explanation
Indices: 30090--30259 Score: 175
Period size: 51 Copynumber: 3.3 Consensus size: 51
30080 AGAAATAACG
* *
30090 GGGTTGGAGTATCCCCGATGAAAGGAAAATTGGTGTTTTGAAAATAAAACCA
1 GGGTTGGAGTATCCCCGATG-ATGGAAAATTGATGTTTTGAAAATAAAACCA
* *
30142 GGGTTGGAGTATCCCCAATTG-TGGAAAATT-ACTGTTTT-AGAGATAAAACCA
1 GGGTTGGAGTATCCCCGA-TGATGGAAAATTGA-TGTTTTGA-AAATAAAACCA
* * * * * ** *
30193 GGGTTGGAGTATCCCTGATTATGAAAAATTGATATTTTGGAAATAAAGTCG
1 GGGTTGGAGTATCCCCGATGATGGAAAATTGATGTTTTGAAAATAAAACCA
30244 GGGTTGGAGTATCCCC
1 GGGTTGGAGTATCCCC
30260 TCGAAGGCAA
Statistics
Matches: 97, Mismatches: 15, Indels: 13
0.78 0.12 0.10
Matches are distributed among these distances:
50 2 0.02
51 75 0.77
52 18 0.19
53 2 0.02
ACGTcount: A:0.32, C:0.12, G:0.26, T:0.29
Consensus pattern (51 bp):
GGGTTGGAGTATCCCCGATGATGGAAAATTGATGTTTTGAAAATAAAACCA
Found at i:32716 original size:13 final size:13
Alignment explanation
Indices: 32698--32723 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
32688 ACAAAGATCG
32698 ATGTATCGATACA
1 ATGTATCGATACA
32711 ATGTATCGATACA
1 ATGTATCGATACA
32724 TTTCCTTAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:32734 original size:21 final size:21
Alignment explanation
Indices: 32710--32751 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
32700 GTATCGATAC
32710 AATGTATCGATACATTTCCTT
1 AATGTATCGATACATTTCCTT
32731 AATGTATCGATACATTTCCTT
1 AATGTATCGATACATTTCCTT
32752 GGCAGTAGCT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.29, C:0.19, G:0.10, T:0.43
Consensus pattern (21 bp):
AATGTATCGATACATTTCCTT
Found at i:32798 original size:17 final size:16
Alignment explanation
Indices: 32772--32836 Score: 73
Period size: 17 Copynumber: 4.0 Consensus size: 16
32762 TCGTAGCGAT
32772 ACTTTGTATCGATACA
1 ACTTTGTATCGATACA
32788 ACTTATGTATCGATAC-
1 ACTT-TGTATCGATACA
32804 A--TTGTATCGATACAAA
1 ACTTTGTATCGATAC--A
32820 ACTTATGTATCGATACA
1 ACTT-TGTATCGATACA
32837 TTTACTGAAT
Statistics
Matches: 42, Mismatches: 0, Indels: 13
0.76 0.00 0.24
Matches are distributed among these distances:
13 11 0.26
14 1 0.02
16 6 0.14
17 12 0.29
18 1 0.02
19 11 0.26
ACGTcount: A:0.35, C:0.17, G:0.12, T:0.35
Consensus pattern (16 bp):
ACTTTGTATCGATACA
Found at i:32802 original size:30 final size:31
Alignment explanation
Indices: 32768--32838 Score: 117
Period size: 32 Copynumber: 2.3 Consensus size: 31
32758 AGCTTCGTAG
*
32768 CGATACTTTGTATCGATAC-AACTTATGTAT
1 CGATACATTGTATCGATACAAACTTATGTAT
32798 CGATACATTGTATCGATACAAAACTTATGTAT
1 CGATACATTGTATCGATAC-AAACTTATGTAT
32830 CGATACATT
1 CGATACATT
32839 TACTGAATGT
Statistics
Matches: 38, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
30 18 0.47
32 20 0.53
ACGTcount: A:0.34, C:0.17, G:0.13, T:0.37
Consensus pattern (31 bp):
CGATACATTGTATCGATACAAACTTATGTAT
Found at i:32817 original size:13 final size:13
Alignment explanation
Indices: 32768--32817 Score: 55
Period size: 13 Copynumber: 3.5 Consensus size: 13
32758 AGCTTCGTAG
*
32768 CGATACTTTGTAT
1 CGATACATTGTAT
32781 CGATACAACTTATGTAT
1 CGATAC-A--T-TGTAT
32798 CGATACATTGTAT
1 CGATACATTGTAT
32811 CGATACA
1 CGATACA
32818 AAACTTATGT
Statistics
Matches: 32, Mismatches: 1, Indels: 8
0.78 0.02 0.20
Matches are distributed among these distances:
13 18 0.56
14 1 0.03
16 2 0.06
17 11 0.34
ACGTcount: A:0.32, C:0.18, G:0.14, T:0.36
Consensus pattern (13 bp):
CGATACATTGTAT
Found at i:33748 original size:42 final size:42
Alignment explanation
Indices: 33610--33776 Score: 160
Period size: 42 Copynumber: 3.9 Consensus size: 42
33600 CTCTGAGGAC
* * *
33610 AAAAGGAAAATAAAGTGCGTCCTGCTCTTTGAGGACTAGGAGGGAAA
1 AAAAGGAAAAGAAAGTGCGTCCTGCTCTTTGAGGAC-A--A-AG-AG
* * *
33657 AAAAGG-AAATAAAGAGCGTCTTGCTCTTTGAGGACAAAGGAG
1 AAAAGGAAAAGAAAGTGCGTCCTGCTCTTTGAGGACAAA-GAG
33699 AAAAGGAAAACGAAA-TGCGTCCTGCTCTTTGAGGACAAA-AG
1 AAAAGGAAAA-GAAAGTGCGTCCTGCTCTTTGAGGACAAAGAG
* * *
33740 AAAGAGGAAAATAAAGTGCGTCCTACTCTTTAAGGAC
1 AAA-AGGAAAAGAAAGTGCGTCCTGCTCTTTGAGGAC
33777 TAGAAGGTGC
Statistics
Matches: 105, Mismatches: 10, Indels: 15
0.81 0.08 0.12
Matches are distributed among these distances:
41 8 0.08
42 33 0.31
43 27 0.26
44 3 0.03
45 1 0.01
46 27 0.26
47 6 0.06
ACGTcount: A:0.40, C:0.14, G:0.26, T:0.19
Consensus pattern (42 bp):
AAAAGGAAAAGAAAGTGCGTCCTGCTCTTTGAGGACAAAGAG
Found at i:33901 original size:55 final size:54
Alignment explanation
Indices: 33760--34002 Score: 263
Period size: 55 Copynumber: 4.3 Consensus size: 54
33750 ATAAAGTGCG
* * ** *
33760 TCCTACTCTTTAAGGACTAGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCA
1 TCCTGCTCTTTGAGGACT-GAAAATGCCACCAACTCGTGTGGGCTTT-----G-AAAGGCA
*
33821 TCCTGCTCTTTGAGGATTGAGAAATGCCACCAACTCGTGTGGGCTTTGAAAGGCA
1 TCCTGCTCTTTGAGGACTGA-AAATGCCACCAACTCGTGTGGGCTTTGAAAGGCA
* * *
33876 TCCTGCTTTTTGAGGACTGGAAAATGCCACCAACTCATGTGGGCTTTGAAAGGCG
1 TCCTGCTCTTTGAGGACT-GAAAATGCCACCAACTCGTGTGGGCTTTGAAAGGCA
* * * *
33931 TCCTGCTCTTTAAGGACT-AAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGCA
1 TCCTGCTCTTTGAGGACTGAAA-ATGCCACCAACTCGTGTGGGCTTTGAAAGGCA
*
33985 TCATGCTCTTTGAGGACT
1 TCCTGCTCTTTGAGGACT
34003 AAAGGGTGAA
Statistics
Matches: 160, Mismatches: 19, Indels: 13
0.83 0.10 0.07
Matches are distributed among these distances:
53 3 0.02
54 43 0.27
55 71 0.44
56 3 0.02
60 2 0.01
61 38 0.24
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.28
Consensus pattern (54 bp):
TCCTGCTCTTTGAGGACTGAAAATGCCACCAACTCGTGTGGGCTTTGAAAGGCA
Found at i:34141 original size:148 final size:149
Alignment explanation
Indices: 33868--34150 Score: 442
Period size: 148 Copynumber: 1.9 Consensus size: 149
33858 TGTGGGCTTT
*
33868 GAAAGGCATCCTGCTTTTTGAGGACTGGAAAATGCCACCAACTCATGTGGGCTTTGAAAGGCGTC
1 GAAAGGCATCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTCATGTGGGCTTTGAAAGGCGTC
* *
33933 CTGCTCTTTAAGGACTAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGCATCATGCTCTTTGA
66 CTACTCTTTAAGGACTAAAGGTGCCACCAACTTGTGGGGGCTTTAAAAGGCATCATGCTCTTTGA
33998 GGACTAAAGGGTGAAGGGA
131 GGACTAAAGGGTGAAGGGA
* * * ** * *
34017 GAAA-GCATCTTGCTCTTTGAGGACTGGGAAGTGCCACCAACTTGTGTGGGCTTTGAATGGCTTC
1 GAAAGGCATCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTCATGTGGGCTTTGAAAGGCGTC
* * *
34081 CTACTCTTTGAGGACTAAAGGTGCCACCAACTTGTGGGGGCTTTAAAAGGCGTCCTGCTCTTTGA
66 CTACTCTTTAAGGACTAAAGGTGCCACCAACTTGTGGGGGCTTTAAAAGGCATCATGCTCTTTGA
34146 GGACT
131 GGACT
34151 GGGAAGTGCC
Statistics
Matches: 121, Mismatches: 13, Indels: 1
0.90 0.10 0.01
Matches are distributed among these distances:
148 117 0.97
149 4 0.03
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.27
Consensus pattern (149 bp):
GAAAGGCATCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTCATGTGGGCTTTGAAAGGCGTC
CTACTCTTTAAGGACTAAAGGTGCCACCAACTTGTGGGGGCTTTAAAAGGCATCATGCTCTTTGA
GGACTAAAGGGTGAAGGGA
Found at i:34173 original size:203 final size:202
Alignment explanation
Indices: 33818--34185 Score: 542
Period size: 203 Copynumber: 1.8 Consensus size: 202
33808 AAAGGAAAAG
* *
33818 GCATCCTGCTCTTTGAGGATTGAGAAATGCCACCAACTCGTGTGGGCTTTGAAAGGCATCCTGCT
1 GCATCCTGCTCTTTGAGGACTGAGAAATGCCACCAACTCGTGTGGGCTTTGAAAGGCATCCTACT
* * *
33883 TTTTGAGGACTGGAAAATGCCACCAACTCATGTGGGCTTTGAAAGGCGTCCTGCTCTTTAAGGAC
66 CTTTGAGGACT-GAAAATGCCACCAACTCATGGGGGCTTTAAAAGGCGTCCTGCTCTTTAAGGAC
33948 TAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGCATCATGCTCTTTGAGGACTAAAGGGTGAA
130 TAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGCATCATGCTCTTTGAGGACTAAAGGGTGAA
34013 GGGAGAAA
195 GGGAGAAA
* * * * * *
34021 GCATCTTGCTCTTTGAGGACTGGGAAGTGCCACCAACTTGTGTGGGCTTTGAATGGCTTCCTACT
1 GCATCCTGCTCTTTGAGGACTGAGAAATGCCACCAACTCGTGTGGGCTTTGAAAGGCATCCTACT
* ** *
34086 CTTTGAGGACT-AAAGGTGCCACCAACTTGTGGGGGCTTTAAAAGGCGTCCTGCTCTTTGAGGAC
66 CTTTGAGGACTGAAA-ATGCCACCAACTCATGGGGGCTTTAAAAGGCGTCCTGCTCTTTAAGGAC
*
34150 TGGGAA-GTGCCACCAACTTGTGTGGGCTTTAAAAGG
130 T--AAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGG
34186 AAAAGGCATC
Statistics
Matches: 146, Mismatches: 16, Indels: 6
0.87 0.10 0.04
Matches are distributed among these distances:
201 3 0.02
202 44 0.30
203 97 0.66
204 2 0.01
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.27
Consensus pattern (202 bp):
GCATCCTGCTCTTTGAGGACTGAGAAATGCCACCAACTCGTGTGGGCTTTGAAAGGCATCCTACT
CTTTGAGGACTGAAAATGCCACCAACTCATGGGGGCTTTAAAAGGCGTCCTGCTCTTTAAGGACT
AAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGCATCATGCTCTTTGAGGACTAAAGGGTGAAG
GGAGAAA
Found at i:34238 original size:59 final size:54
Alignment explanation
Indices: 34021--34273 Score: 285
Period size: 59 Copynumber: 4.4 Consensus size: 54
34011 AAGGGAGAAA
* *
34021 GCATCTTGCTCTTTGAGGACTGGGAAGTGCCACCAACTTGTGTGGGCTTTG-AATG
1 GCATCCTGCTCTTTGAGGACT--GAAGTGCCACCAACTTGTGTGGGCTTTGAAAAG
* * * *
34076 GCTTCCTACTCTTTGAGGACTAAAGGTGCCACCAACTTGTGGGGGCTTT-AAAAG
1 GCATCCTGCTCTTTGAGGACTGAA-GTGCCACCAACTTGTGTGGGCTTTGAAAAG
*
34130 GCGTCCTGCTCTTTGAGGACTGGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAG
1 GCATCCTGCTCTTTGAGGACT--GAAGTGCCACCAACTTGTGTGGGCTTT-----GAAAAG
*
34191 GCATCCTGCTCTTTGAGGACTGAAGTGCCACCAACTCGTGTGGGCTTTGAAAGGAAAAG
1 GCATCCTGCTCTTTGAGGACTGAAGTGCCACCAACTTGTGTGGGCTTT-----GAAAAG
34250 GCATCCTGCTCTTTGAGGACTGAA
1 GCATCCTGCTCTTTGAGGACTGAA
34274 AAGTGGAAGG
Statistics
Matches: 175, Mismatches: 13, Indels: 16
0.86 0.06 0.08
Matches are distributed among these distances:
53 2 0.01
54 45 0.26
55 41 0.23
56 2 0.01
59 60 0.34
61 25 0.14
ACGTcount: A:0.23, C:0.21, G:0.29, T:0.27
Consensus pattern (54 bp):
GCATCCTGCTCTTTGAGGACTGAAGTGCCACCAACTTGTGTGGGCTTTGAAAAG
Found at i:35258 original size:13 final size:13
Alignment explanation
Indices: 35240--35265 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
35230 CAATTTTTGG
35240 TGTATCGATACAT
1 TGTATCGATACAT
35253 TGTATCGATACAT
1 TGTATCGATACAT
35266 ACTTTGTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:35262 original size:33 final size:32
Alignment explanation
Indices: 35220--35283 Score: 94
Period size: 33 Copynumber: 2.0 Consensus size: 32
35210 TACAAGCCAA
*
35220 TGTATCGATACA-ATTTTTGGTGTATCGATACAT
1 TGTATCGATACATA-CTTT-GTGTATCGATACAT
35253 TGTATCGATACATACTTTGTGTATCGATACA
1 TGTATCGATACATACTTTGTGTATCGATACA
35284 AGTTTGGCTA
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
32 13 0.45
33 15 0.52
34 1 0.03
ACGTcount: A:0.28, C:0.14, G:0.17, T:0.41
Consensus pattern (32 bp):
TGTATCGATACATACTTTGTGTATCGATACAT
Found at i:35280 original size:32 final size:33
Alignment explanation
Indices: 35220--35283 Score: 96
Period size: 32 Copynumber: 2.0 Consensus size: 33
35210 TACAAGCCAA
*
35220 TGTATCGATACAATTTTTGGTGTATCGATACAT
1 TGTATCGATACAATCTTTGGTGTATCGATACAT
35253 TGTATCGATAC-ATACTTT-GTGTATCGATACA
1 TGTATCGATACAAT-CTTTGGTGTATCGATACA
35284 AGTTTGGCTA
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
32 15 0.52
33 14 0.48
ACGTcount: A:0.28, C:0.14, G:0.17, T:0.41
Consensus pattern (33 bp):
TGTATCGATACAATCTTTGGTGTATCGATACAT
Found at i:37851 original size:13 final size:13
Alignment explanation
Indices: 37835--37870 Score: 54
Period size: 13 Copynumber: 2.8 Consensus size: 13
37825 ATCCCCCTGT
*
37835 ATCGATACAGTGC
1 ATCGATACAATGC
*
37848 ATCGATACAATGT
1 ATCGATACAATGC
37861 ATCGATACAA
1 ATCGATACAA
37871 AGAAAAATGT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
13 21 1.00
ACGTcount: A:0.39, C:0.19, G:0.17, T:0.25
Consensus pattern (13 bp):
ATCGATACAATGC
Found at i:41822 original size:22 final size:20
Alignment explanation
Indices: 41773--41824 Score: 59
Period size: 21 Copynumber: 2.5 Consensus size: 20
41763 ATCATGCAAG
41773 TTTTTATTTTTCTTAGCTAAT
1 TTTTTA-TTTTCTTAGCTAAT
**
41794 TCATTATTTTCATTAGCTAAAT
1 TTTTTATTTTC-TTAGCT-AAT
41816 TTTTTATTT
1 TTTTTATTT
41825 CAACTTGCAA
Statistics
Matches: 25, Mismatches: 4, Indels: 3
0.78 0.12 0.09
Matches are distributed among these distances:
20 5 0.20
21 10 0.40
22 10 0.40
ACGTcount: A:0.23, C:0.10, G:0.04, T:0.63
Consensus pattern (20 bp):
TTTTTATTTTCTTAGCTAAT
Found at i:44072 original size:13 final size:13
Alignment explanation
Indices: 44054--44079 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
44044 CAATTTTTGG
44054 TGTATCGATACAT
1 TGTATCGATACAT
44067 TGTATCGATACAT
1 TGTATCGATACAT
44080 ACTTTGTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:44076 original size:33 final size:32
Alignment explanation
Indices: 44034--44097 Score: 94
Period size: 33 Copynumber: 2.0 Consensus size: 32
44024 TACAAGCCAA
*
44034 TGTATCGATACA-ATTTTTGGTGTATCGATACAT
1 TGTATCGATACATA-CTTT-GTGTATCGATACAT
44067 TGTATCGATACATACTTTGTGTATCGATACA
1 TGTATCGATACATACTTTGTGTATCGATACA
44098 AGTTTGGCTA
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
32 13 0.45
33 15 0.52
34 1 0.03
ACGTcount: A:0.28, C:0.14, G:0.17, T:0.41
Consensus pattern (32 bp):
TGTATCGATACATACTTTGTGTATCGATACAT
Found at i:44094 original size:32 final size:33
Alignment explanation
Indices: 44034--44097 Score: 96
Period size: 32 Copynumber: 2.0 Consensus size: 33
44024 TACAAGCCAA
*
44034 TGTATCGATACAATTTTTGGTGTATCGATACAT
1 TGTATCGATACAATCTTTGGTGTATCGATACAT
44067 TGTATCGATAC-ATACTTT-GTGTATCGATACA
1 TGTATCGATACAAT-CTTTGGTGTATCGATACA
44098 AGTTTGGCTA
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
32 15 0.52
33 14 0.48
ACGTcount: A:0.28, C:0.14, G:0.17, T:0.41
Consensus pattern (33 bp):
TGTATCGATACAATCTTTGGTGTATCGATACAT
Found at i:57779 original size:79 final size:78
Alignment explanation
Indices: 57681--58015 Score: 386
Period size: 79 Copynumber: 4.2 Consensus size: 78
57671 GAGATAATAA
*
57681 CGGGGTTGGAGTATCCCCTTGAAAATAACGGGGTTGGAGTATCCCCGA-TAGTGAAAAATCGATG
1 CGGGGTTGGAGTATCCCCTTGAAAATAACGGGGTTGGAGTATCCCCGATTA-TGAAAAATTGATG
* *
57745 ATTAGGAAATGAAAT
65 ATTA-GAAATAAAAC
* * * ** *
57760 CGGGATTGGAGTATCCCCTTGGAAATAACGGGATTAAAGTATTCCCGATTATGAAAAATTGATGT
1 CGGGGTTGGAGTATCCCCTTGAAAATAACGGGGTTGGAGTATCCCCGATTATGAAAAATTGATG-
*
57825 TTTAGAAATAAAAC
65 ATTAGAAATAAAAC
* *
57839 CGGGGTTGGAGTATCCCCTTGAAAATAACGGGGTTGGAGTATCCCCGATTATGATAAATTAAT-A
1 CGGGGTTGGAGTATCCCCTTGAAAATAACGGGGTTGGAGTATCCCCGATTATGAAAAATTGATGA
*
57903 TTTTAAAAATAAAAC
66 --TTAGAAATAAAAC
* * ** * * * *
57918 CAGGGTTGGAGTATCCCCTTGGAAATAACGGGGTTGGAGTATCCTTGATGAAAGGAAAATTGGTG
1 CGGGGTTGGAGTATCCCCTTGAAAATAACGGGGTTGGAGTATCCCCGAT-TATGAAAAATTGATG
* *
57983 TTTTGAAAATAAAAC
65 ATTAG-AAATAAAAC
57998 CGGGGTTGGAGTATCCCC
1 CGGGGTTGGAGTATCCCC
58016 GATTGTGGAA
Statistics
Matches: 215, Mismatches: 34, Indels: 13
0.82 0.13 0.05
Matches are distributed among these distances:
79 176 0.82
80 39 0.18
ACGTcount: A:0.33, C:0.14, G:0.26, T:0.27
Consensus pattern (78 bp):
CGGGGTTGGAGTATCCCCTTGAAAATAACGGGGTTGGAGTATCCCCGATTATGAAAAATTGATGA
TTAGAAATAAAAC
Found at i:57857 original size:158 final size:158
Alignment explanation
Indices: 57681--58015 Score: 439
Period size: 158 Copynumber: 2.1 Consensus size: 158
57671 GAGATAATAA
*
57681 CGGGGTTGGAGTATCCCCTTGAAAATAACGGGGTTGGAGTATCCCCGA-TAGTGAAAAATCGATG
1 CGGGGTTGGAGTATCCCCTTGAAAATAACGGGGTTGGAGTATCCCCGATTA-TGAAAAATCAAT-
* * *
57745 A-TTAGGAAATGAAATC-GGGATTGGAGTATCCCCTTGGAAATAACGGGATTAAAGTATTCC-CG
64 ATTTA-AAAATAAAACCAGGG-TTGGAGTATCCCCTTGGAAATAACGGGATTAAAGTA-TCCTCG
* *
57807 AT-TATGAAAAATTGATGTTTT-AGAAATAAAAC
126 ATGAAAGAAAAATTGATGTTTTGA-AAATAAAAC
* *
57839 CGGGGTTGGAGTATCCCCTTGAAAATAACGGGGTTGGAGTATCCCCGATTATGATAAATTAATAT
1 CGGGGTTGGAGTATCCCCTTGAAAATAACGGGGTTGGAGTATCCCCGATTATGAAAAATCAATA-
* ** *
57904 TTTAAAAATAAAACCAGGGTTGGAGTATCCCCTTGGAAATAACGGGGTTGGAGTATCCTTGATGA
65 TTTAAAAATAAAACCAGGGTTGGAGTATCCCCTTGGAAATAACGGGATTAAAGTATCCTCGATGA
* *
57969 AAGGAAAATTGGTGTTTTGAAAATAAAAC
130 AAGAAAAATTGATGTTTTGAAAATAAAAC
57998 CGGGGTTGGAGTATCCCC
1 CGGGGTTGGAGTATCCCC
58016 GATTGTGGAA
Statistics
Matches: 156, Mismatches: 14, Indels: 13
0.85 0.08 0.07
Matches are distributed among these distances:
157 4 0.03
158 101 0.65
159 50 0.32
160 1 0.01
ACGTcount: A:0.33, C:0.14, G:0.26, T:0.27
Consensus pattern (158 bp):
CGGGGTTGGAGTATCCCCTTGAAAATAACGGGGTTGGAGTATCCCCGATTATGAAAAATCAATAT
TTAAAAATAAAACCAGGGTTGGAGTATCCCCTTGGAAATAACGGGATTAAAGTATCCTCGATGAA
AGAAAAATTGATGTTTTGAAAATAAAAC
Found at i:58046 original size:51 final size:51
Alignment explanation
Indices: 57971--58070 Score: 148
Period size: 51 Copynumber: 2.0 Consensus size: 51
57961 CTTGATGAAA
* *
57971 GGAAAATTGGTGTTTTGAAAATAAAACCGGGGTTGGAGTATCCCCGATTGT
1 GGAAAATTAGTGTTTTGAAAATAAAACCGGGGTTGAAGTATCCCCGATTGT
* *
58022 GGAAAATTAGTGTTTT-AGAGATAAAACTGGGGTTGAAGTATCCCCGATT
1 GGAAAATTAGTGTTTTGA-AAATAAAACCGGGGTTGAAGTATCCCCGATT
58071 ATAAGAAATT
Statistics
Matches: 44, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
50 1 0.02
51 43 0.98
ACGTcount: A:0.31, C:0.11, G:0.28, T:0.30
Consensus pattern (51 bp):
GGAAAATTAGTGTTTTGAAAATAAAACCGGGGTTGAAGTATCCCCGATTGT
Found at i:58097 original size:51 final size:51
Alignment explanation
Indices: 57972--58106 Score: 139
Period size: 51 Copynumber: 2.6 Consensus size: 51
57962 TTGATGAAAG
* * * * *
57972 GAAAATTGGTGTTTTGAAAATAAAACCGGGGTTGGAGTATCCCCGATTGTG
1 GAAAATTGATGTTTTGGAAATAAAACCGGGGTTGAAGTATCCCCGATTATA
* * *
58023 GAAAATT-AGTGTTTTAGAGATAAAACTGGGGTTGAAGTATCCCCGATTATA
1 GAAAATTGA-TGTTTTGGAAATAAAACCGGGGTTGAAGTATCCCCGATTATA
* **
58074 -AGAAATTGATATTTTGGAAATAAAGTCGGGGTT
1 GA-AAATTGATGTTTTGGAAATAAAACCGGGGTT
58107 AGGGTATCCC
Statistics
Matches: 67, Mismatches: 14, Indels: 6
0.77 0.16 0.07
Matches are distributed among these distances:
50 1 0.01
51 65 0.97
52 1 0.01
ACGTcount: A:0.33, C:0.09, G:0.27, T:0.31
Consensus pattern (51 bp):
GAAAATTGATGTTTTGGAAATAAAACCGGGGTTGAAGTATCCCCGATTATA
Found at i:58175 original size:182 final size:182
Alignment explanation
Indices: 57867--58334 Score: 695
Period size: 182 Copynumber: 2.6 Consensus size: 182
57857 TTGAAAATAA
* * ** * *
57867 CGGGGTTGGAGTATCCCCGATTATGATAAATTAATATTTTAAAAATAAAACCAGGGTTGGAGTAT
1 CGGGGTTGGAGTATCCCCGATTATGAGAAATTGATATTTTGGAAATAAAGCCGGGGTTGGAGTAT
* ** * *
57932 CCCCTTGGAAATAACGGGGTTGGAGTATCCTTGATGAAAGGAAAATTGGTGTTTTGAAAATAAAA
66 CCCCTCGGAGGTAATGGGGTTGGAGTATCCTCGATGAAAGGAAAATTGGTGTTTTGAAAATAAAA
* *
57997 CCGGGGTTGGAGTATCCCCGATTGTGGAAAATTAGTGTTTTAGAGATAAAAC
131 CCGAGGTTGGAGTATCCCCGATTGTGGAAAATTAGCGTTTTAGAGATAAAAC
* * * *
58049 TGGGGTTGAAGTATCCCCGATTATAAGAAATTGATATTTTGGAAATAAAGTCGGGGTTAGG-GTA
1 CGGGGTTGGAGTATCCCCGATTATGAGAAATTGATATTTTGGAAATAAAGCCGGGGTT-GGAGTA
* *
58113 TCCCCTCAGAGGCAATGGGGTTGGAGTATCCTCGATGAAAGGAAAATTGGTGTTTTGAAAATAAA
65 TCCCCTCGGAGGTAATGGGGTTGGAGTATCCTCGATGAAAGGAAAATTGGTGTTTTGAAAATAAA
* *
58178 ACCGAGGTTGGAGTATCCTCGATTGTGGAAAATTAGCGTTTTAGGGATAAAAC
130 ACCGAGGTTGGAGTATCCCCGATTGTGGAAAATTAGCGTTTTAGAGATAAAAC
* * *
58231 CGGGGTCGGAGTATCCCCGATTATGAGAAATTGACACTTTGGAAATAAAGCCGGGGTTGGAGTAT
1 CGGGGTTGGAGTATCCCCGATTATGAGAAATTGATATTTTGGAAATAAAGCCGGGGTTGGAGTAT
*
58296 CCCCTCGGAGGTAATGGGGTTGGAGTATCCCCGATGAAA
66 CCCCTCGGAGGTAATGGGGTTGGAGTATCCTCGATGAAA
58335 TAACGAGGTT
Statistics
Matches: 253, Mismatches: 31, Indels: 4
0.88 0.11 0.01
Matches are distributed among these distances:
181 2 0.01
182 249 0.98
183 2 0.01
ACGTcount: A:0.31, C:0.13, G:0.28, T:0.28
Consensus pattern (182 bp):
CGGGGTTGGAGTATCCCCGATTATGAGAAATTGATATTTTGGAAATAAAGCCGGGGTTGGAGTAT
CCCCTCGGAGGTAATGGGGTTGGAGTATCCTCGATGAAAGGAAAATTGGTGTTTTGAAAATAAAA
CCGAGGTTGGAGTATCCCCGATTGTGGAAAATTAGCGTTTTAGAGATAAAAC
Found at i:58194 original size:80 final size:79
Alignment explanation
Indices: 58049--58195 Score: 172
Period size: 80 Copynumber: 1.8 Consensus size: 79
58039 GAGATAAAAC
* * ** *
58049 TGGGGTTGAAGTATCCCCGATTATAAGAAATTGATATTTTGGAAATAAAGTCGGGGTTAGGGTAT
1 TGGGGTTGAAGTATCCCCGATGATAAGAAATTGATATTTTGAAAATAAAACCGAGGTTAGGGTAT
58114 CCCCTCAGAGGCAA
66 CCCCTCAGAGGCAA
* * * *
58128 TGGGGTTGGAGTATCCTCGATGA-AAGGAAAATTGGTGTTTTGAAAATAAAACCGAGGTT-GGAG
1 TGGGGTTGAAGTATCCCCGATGATAA-G-AAATTGATATTTTGAAAATAAAACCGAGGTTAGG-G
58191 TATCC
63 TATCC
58196 TCGATTGTGG
Statistics
Matches: 56, Mismatches: 9, Indels: 5
0.80 0.13 0.07
Matches are distributed among these distances:
78 2 0.04
79 23 0.41
80 31 0.55
ACGTcount: A:0.31, C:0.12, G:0.29, T:0.28
Consensus pattern (79 bp):
TGGGGTTGAAGTATCCCCGATGATAAGAAATTGATATTTTGAAAATAAAACCGAGGTTAGGGTAT
CCCCTCAGAGGCAA
Found at i:58452 original size:52 final size:53
Alignment explanation
Indices: 58364--58465 Score: 154
Period size: 52 Copynumber: 1.9 Consensus size: 53
58354 TCGCTTGTGA
* *
58364 AAAATTGGTGTTTTTTGGAAATAAAATCGGAGTTGGAGTATCCCCGATTAAAGG
1 AAAATTGGTG-TTTTTGAAAATAAAACCGGAGTTGGAGTATCCCCGATTAAAGG
58418 AAAATTGGTG-TTTTGAAAATAAAACCAGGA-TTGGAGTATCCCCGATTA
1 AAAATTGGTGTTTTTGAAAATAAAACC-GGAGTTGGAGTATCCCCGATTA
58466 TAAATAATTG
Statistics
Matches: 45, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
52 32 0.71
53 3 0.07
54 10 0.22
ACGTcount: A:0.35, C:0.11, G:0.24, T:0.30
Consensus pattern (53 bp):
AAAATTGGTGTTTTTGAAAATAAAACCGGAGTTGGAGTATCCCCGATTAAAGG
Found at i:60849 original size:13 final size:13
Alignment explanation
Indices: 60831--60856 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
60821 CAAAGAATAG
60831 ATGTATCGATACA
1 ATGTATCGATACA
60844 ATGTATCGATACA
1 ATGTATCGATACA
60857 CAGAAAAATG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:60853 original size:34 final size:33
Alignment explanation
Indices: 60810--60876 Score: 107
Period size: 34 Copynumber: 2.0 Consensus size: 33
60800 AACTTCATAG
*
60810 ATGTATCGATACAAAGAATAGATGTATCGATACA
1 ATGTATCGATACAAAGAA-AAATGTATCGATACA
*
60844 ATGTATCGATACACAGAAAAATGTATCGATACA
1 ATGTATCGATACAAAGAAAAATGTATCGATACA
60877 TTTCCTTGGC
Statistics
Matches: 31, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
33 14 0.45
34 17 0.55
ACGTcount: A:0.45, C:0.13, G:0.16, T:0.25
Consensus pattern (33 bp):
ATGTATCGATACAAAGAAAAATGTATCGATACA
Found at i:63818 original size:61 final size:60
Alignment explanation
Indices: 63713--63980 Score: 302
Period size: 61 Copynumber: 4.4 Consensus size: 60
63703 TCTTCAAATC
* * *
63713 TCTCTTATCAAAGTCCACGACTCAGTGGCATCTCTTCCCAAAGTCCACGACTCAGTGGCA
1 TCTCTTCTCAAATTCCACGACTCAGTGGCATCTCTTCTCAAAGTCCACGACTCAGTGGCA
* * * * * *
63773 TCTTTTCTTCAAATTCCACAACTCAGTGGCATCTTTTTTCTAAGTCCATGACTCAGTGGCA
1 TCTCTTC-TCAAATTCCACGACTCAGTGGCATCTCTTCTCAAAGTCCACGACTCAGTGGCA
* * * * * * * * *
63834 TCCTTTTCTTCCAAGTCCATGACTCAATGGCATTTTTTTCTTCAAAGTCCATGACTCAATGGCA
1 T-CTCTTC-TCAAATTCCACGACTCAGTGGCA-TCTCTTC-TCAAAGTCCACGACTCAGTGGCA
* *
63898 TCTCTTCTCAAATTCCATGACTTAGTGGCATCTCTTCTCAAAGTCCACGACTCAGTGGCA
1 TCTCTTCTCAAATTCCACGACTCAGTGGCATCTCTTCTCAAAGTCCACGACTCAGTGGCA
*
63958 TCTCTTCCCAAATTCCACGACTC
1 TCTCTTCTCAAATTCCACGACTC
63981 TATGGCACCC
Statistics
Matches: 174, Mismatches: 30, Indels: 8
0.82 0.14 0.04
Matches are distributed among these distances:
60 46 0.26
61 52 0.30
62 44 0.25
63 10 0.06
64 22 0.13
ACGTcount: A:0.24, C:0.30, G:0.13, T:0.33
Consensus pattern (60 bp):
TCTCTTCTCAAATTCCACGACTCAGTGGCATCTCTTCTCAAAGTCCACGACTCAGTGGCA
Found at i:63987 original size:30 final size:30
Alignment explanation
Indices: 63713--63980 Score: 293
Period size: 30 Copynumber: 8.8 Consensus size: 30
63703 TCTTCAAATC
*
63713 TCTCTTATCAAAGTCCACGACTCAGTGGCA
1 TCTCTTCTCAAAGTCCACGACTCAGTGGCA
*
63743 TCTCTTCCCAAAGTCCACGACTCAGTGGCA
1 TCTCTTCTCAAAGTCCACGACTCAGTGGCA
* * *
63773 TCTTTTCTTCAAATTCCACAACTCAGTGGCA
1 TCTCTTC-TCAAAGTCCACGACTCAGTGGCA
* * * *
63804 TCTTTTTTCTAAGTCCATGACTCAGTGGCA
1 TCTCTTCTCAAAGTCCACGACTCAGTGGCA
* * * *
63834 TCCTTTTCTTCCAAGTCCATGACTCAATGGCA
1 T-CTCTTC-TCAAAGTCCACGACTCAGTGGCA
* * * *
63866 TTTTTTTCTTCAAAGTCCATGACTCAATGGCA
1 -TCTCTTC-TCAAAGTCCACGACTCAGTGGCA
* * *
63898 TCTCTTCTCAAATTCCATGACTTAGTGGCA
1 TCTCTTCTCAAAGTCCACGACTCAGTGGCA
63928 TCTCTTCTCAAAGTCCACGACTCAGTGGCA
1 TCTCTTCTCAAAGTCCACGACTCAGTGGCA
* *
63958 TCTCTTCCCAAATTCCACGACTC
1 TCTCTTCTCAAAGTCCACGACTC
63981 TATGGCACCC
Statistics
Matches: 208, Mismatches: 26, Indels: 8
0.86 0.11 0.03
Matches are distributed among these distances:
30 122 0.59
31 36 0.17
32 49 0.24
33 1 0.00
ACGTcount: A:0.24, C:0.30, G:0.13, T:0.33
Consensus pattern (30 bp):
TCTCTTCTCAAAGTCCACGACTCAGTGGCA
Found at i:64077 original size:34 final size:34
Alignment explanation
Indices: 63989--64813 Score: 573
Period size: 34 Copynumber: 25.8 Consensus size: 34
63979 TCTATGGCAC
** *
63989 CCTTTTAAGTCCACAACTTTGTGGCAC-C-TTTC
1 CCTTTTAAGTCCACAACTCCGTGGCACTCTTTTT
* *
64021 CCTTTTAAAGCCCACAACTTCGTGGCACTCTTTTT
1 CCTTTT-AAGTCCACAACTCCGTGGCACTCTTTTT
* *
64056 CCTTTTAAGTCCACAATTTCGTGGCA--C-----
1 CCTTTTAAGTCCACAACTCCGTGGCACTCTTTTT
* *
64083 CCATTTAAGTCCACAACTCCATGGCA-TC----T
1 CCTTTTAAGTCCACAACTCCGTGGCACTCTTTTT
*
64112 CCTTTTAAGTCCACAACTTCGTGGCAC-CTTTTT
1 CCTTTTAAGTCCACAACTCCGTGGCACTCTTTTT
* *
64145 --TTTTAAAGCCCACAACTCCATGGCACTCTTTTT
1 CCTTTT-AAGTCCACAACTCCGTGGCACTCTTTTT
* * *
64178 CTTTTTAAGTCCACAACTCCATAGCA-TCTTTTT
1 CCTTTTAAGTCCACAACTCCGTGGCACTCTTTTT
* *
64211 CTTTTTAAGTCCACAACTCCATGGCAC-CTTTTT
1 CCTTTTAAGTCCACAACTCCGTGGCACTCTTTTT
* *
64244 CTTTTTAAAGCCCACAACTCCGTGGCACTCTTTTT
1 CCTTTT-AAGTCCACAACTCCGTGGCACTCTTTTT
*
64279 CCTTTTAAGTCCACAACTTCGTGGCA-TCTTTTT
1 CCTTTTAAGTCCACAACTCCGTGGCACTCTTTTT
* * *
64312 CCTTCTAAGTCTACAACTCAGTGGCA-TCTTTTT
1 CCTTTTAAGTCCACAACTCCGTGGCACTCTTTTT
* *
64345 CCTTTTAAGTCCACAACCCCGTGGCATTCTTTTT
1 CCTTTTAAGTCCACAACTCCGTGGCACTCTTTTT
* ** *
64379 CCTTTTAAGTCCATAACTCTATGACAC-C----T
1 CCTTTTAAGTCCACAACTCCGTGGCACTCTTTTT
* * *
64408 --TTTTAAGCCCACAACTCTGTGGCAC-CTTTTA
1 CCTTTTAAGTCCACAACTCCGTGGCACTCTTTTT
* * * * * *
64439 CTTTTTAAAGCCCACAACTACATGGCGCTATTTTT
1 CCTTTT-AAGTCCACAACTCCGTGGCACTCTTTTT
* * * *
64474 CCTTTTAAGCCCACGACTCAGTGGCAATC----T
1 CCTTTTAAGTCCACAACTCCGTGGCACTCTTTTT
* *
64504 -CTTTTAAGCCCACAACTCTGTGGCACTCTTTTT
1 CCTTTTAAGTCCACAACTCCGTGGCACTCTTTTT
64537 CCTTTTAAGTCCACAACTCCGTGGCA-------T
1 CCTTTTAAGTCCACAACTCCGTGGCACTCTTTTT
* *
64564 CCTTTTCAGTCCACAACTCTGTGGCA--C-----
1 CCTTTTAAGTCCACAACTCCGTGGCACTCTTTTT
64591 CCTTTTAAGTCCACAACTCCGTGGCA--C-----
1 CCTTTTAAGTCCACAACTCCGTGGCACTCTTTTT
*
64618 CC-TTTAAGTCCATAACTCCGTGGCAC-CTTTTTT
1 CCTTTTAAGTCCACAACTCCGTGGCACTC-TTTTT
* *
64651 CTTTTTAAAG-CCTACAACTCTGTGGCACTCTTTTT
1 CCTTTT-AAGTCC-ACAACTCCGTGGCACTCTTTTT
* **
64686 CCTTTTAATTCCACAACTCTATGGCA-TCTTTTT
1 CCTTTTAAGTCCACAACTCCGTGGCACTCTTTTT
** *** * *
64719 CCTTTTAAGTCCATGACTTTATGGCACCCTTTTC
1 CCTTTTAAGTCCACAACTCCGTGGCACTCTTTTT
* * *
64753 CCTTTTAAGCCCACACCTCCGTGGCATCCCTTTTT
1 CCTTTTAAGTCCACAACTCCGTGGCA-CTCTTTTT
* * *
64788 TC-TGTAAGTCCACAACTCCGTTGCAC
1 CCTTTTAAGTCCACAACTCCGTGGCAC
64814 CATTAAGTCC
Statistics
Matches: 656, Mismatches: 91, Indels: 91
0.78 0.11 0.11
Matches are distributed among these distances:
26 22 0.03
27 97 0.15
28 1 0.00
29 50 0.08
30 1 0.00
31 4 0.01
32 25 0.04
33 165 0.25
34 221 0.34
35 69 0.11
36 1 0.00
ACGTcount: A:0.21, C:0.31, G:0.12, T:0.36
Consensus pattern (34 bp):
CCTTTTAAGTCCACAACTCCGTGGCACTCTTTTT
Found at i:64243 original size:27 final size:29
Alignment explanation
Indices: 64086--64232 Score: 105
Period size: 33 Copynumber: 4.7 Consensus size: 29
64076 GTGGCACCCA
* *
64086 TTTAAGTCCACAACTCCATGGCATCTCCT
1 TTTAAGTCCACAACTCCATAGCATCTCTT
* * * * *
64115 TTTAAGTCCACAACTTCGTGGCACCTTTTTT
1 TTTAAGTCCACAACTCCATAGCA--TCTCTT
* *
64146 TTTAAAGCCCACAACTCCATGGCACTCTTTTTCTT
1 TTT-AAGTCCACAACTCCATAGCA-TC----TCTT
64181 TTTAAGTCCACAACTCCATAGCATCTTTTTCTT
1 TTTAAGTCCACAACTCCATAGCATC----TCTT
64214 TTTAAGTCCACAACTCCAT
1 TTTAAGTCCACAACTCCAT
64233 GGCACCTTTT
Statistics
Matches: 99, Mismatches: 12, Indels: 10
0.82 0.10 0.08
Matches are distributed among these distances:
29 21 0.21
31 8 0.08
32 17 0.17
33 29 0.29
34 18 0.18
35 6 0.06
ACGTcount: A:0.24, C:0.30, G:0.09, T:0.37
Consensus pattern (29 bp):
TTTAAGTCCACAACTCCATAGCATCTCTT
Found at i:64275 original size:101 final size:97
Alignment explanation
Indices: 64086--64618 Score: 524
Period size: 101 Copynumber: 5.6 Consensus size: 97
64076 GTGGCACCCA
*
64086 TTTAAGTCCACAACTCCATGGCATCTCCTTTTAAGTCCACAACTTCGTGGCACC-TTTT-TTTTT
1 TTTAAGTCCACAACTCCATGGCATCTCCTTTTAAGTCCACAACTCCGTGGCACCTTTTTCTTTTT
* *
64149 AAAGCCCACAACTCCATGGCACTCTTTTTCTT
66 AAAGCCCACAACTCCGTGGCACTCTTTTTCCT
* * *
64181 TTTAAGTCCACAACTCCATAGCATCTTTTTCTTTTTAAGTCCACAACTCCATGGCACCTTTTTCT
1 TTTAAGTCCACAACTCCATGGCATC----TCCTTTTAAGTCCACAACTCCGTGGCACCTTTTTCT
64246 TTTTAAAGCCCACAACTCCGTGGCACTCTTTTTCCT
62 TTTTAAAGCCCACAACTCCGTGGCACTCTTTTTCCT
* * * * * * *
64282 TTTAAGTCCACAACTTCGTGGCATCTTTTTCCTTCTAAGTCTACAACTCAGTGGCATCTTTTTCC
1 TTTAAGTCCACAACTCCATGGCATC----TCCTTTTAAGTCCACAACTCCGTGGCACCTTTTTCT
* * *
64347 TTTT-AAGTCCACAACCCCGTGGCATTCTTTTTCCT
62 TTTTAAAGCCCACAACTCCGTGGCACTCTTTTTCCT
* * * * * * *
64382 TTTAAGTCCATAACTCTATGACA-C-CTTTTTAAGCCCACAACTCTGTGGCACCTTTTACTTTTT
1 TTTAAGTCCACAACTCCATGGCATCTCCTTTTAAGTCCACAACTCCGTGGCACCTTTTTCTTTTT
* * * *
64445 AAAGCCCACAACTACATGGCGCTATTTTTCCT
66 AAAGCCCACAACTCCGTGGCACTCTTTTTCCT
* * * * *
64477 TTTAAGCCCACGACT-CAGTGGCAATCT-CTTTTAAGCCCACAACTCTGTGGCACTCTTTTTCCT
1 TTTAAGTCCACAACTCCA-TGGC-ATCTCCTTTTAAGTCCACAACTCCGTGGCAC-CTTTTTCTT
*
64540 TTT-AAGTCCACAACTCCGTGGCA-------TCCT
63 TTTAAAGCCCACAACTCCGTGGCACTCTTTTTCCT
* **
64567 TTTCAGTCCACAACTCTGTGGCA-C-CCTTTTAAGTCCACAACTCCGTGGCACC
1 TTTAAGTCCACAACTCCATGGCATCTCCTTTTAAGTCCACAACTCCGTGGCACC
64619 CTTTAAGTCC
Statistics
Matches: 366, Mismatches: 58, Indels: 36
0.80 0.13 0.08
Matches are distributed among these distances:
87 1 0.00
88 25 0.07
89 1 0.00
90 20 0.05
94 32 0.09
95 63 0.17
96 1 0.00
97 42 0.11
98 10 0.03
99 27 0.07
100 50 0.14
101 94 0.26
ACGTcount: A:0.22, C:0.31, G:0.12, T:0.36
Consensus pattern (97 bp):
TTTAAGTCCACAACTCCATGGCATCTCCTTTTAAGTCCACAACTCCGTGGCACCTTTTTCTTTTT
AAAGCCCACAACTCCGTGGCACTCTTTTTCCT
Found at i:64423 original size:27 final size:27
Alignment explanation
Indices: 64381--64437 Score: 78
Period size: 27 Copynumber: 2.1 Consensus size: 27
64371 TTCTTTTTCC
* *
64381 TTTTAAGTCCATAACTCTATGACACCT
1 TTTTAAGCCCACAACTCTATGACACCT
* *
64408 TTTTAAGCCCACAACTCTGTGGCACCT
1 TTTTAAGCCCACAACTCTATGACACCT
64435 TTT
1 TTT
64438 ACTTTTTAAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.25, C:0.28, G:0.11, T:0.37
Consensus pattern (27 bp):
TTTTAAGCCCACAACTCTATGACACCT
Found at i:64540 original size:158 final size:158
Alignment explanation
Indices: 63989--64597 Score: 443
Period size: 158 Copynumber: 3.8 Consensus size: 158
63979 TCTATGGCAC
* * ** * **
63989 CCTTTTAAGTCCACAACTTTGTGGCACCTTTCCCTTTTAAAGCCCACAACTTCGTGGCACTCTTT
1 CCTTCTAAGCCCACAACTCAGTGGCATC-TT-CCTTTT-AAGCCCACAACCCCGTGGCACTCTTT
* * * * ** * ** *
64054 TTCCTTTTAAGTCCACAATTTCGTGGCA-CCCATTTAAGTCCACAACTCCATGGCA---TCT-CC
63 TTCCTTTTAAGTCCACAACTCCATGACATCCTTTTTAAGCCCACAACTCTGTGGCACCTTTTACC
* * * **
64114 TTTTAAGTCCACAACTTCGTGGCACCTTTTT
128 TTTTAAGCCCACAACTACATGGCATATTTTT
* * * * * *
64145 --TTTTAAAGCCCACAACTCCA-TGGCACTCTTTTTCTTTTTAAGTCCACAACTCCATAGCA-TC
1 CCTTCT-AAGCCCACAACT-CAGTGGCA-TC---TTCCTTTTAAGCCCACAACCCCGTGGCACTC
* * * *
64206 TTTTTCTTTTTAAGTCCACAACTCCATGGCACCTTTTTCTTTTTAAAGCCCACAACTCCGTGGCA
60 TTTTTCCTTTTAAGTCCACAACTCCAT-G-A-C--ATCCTTTTT-AAGCCCACAACTCTGTGGCA
* * * * *
64271 CTCTTTTTCCTTTTAAGTCCACAACTTCGTGGCATCTTTTT
119 C-CTTTTACCTTTTAAGCCCACAACTACATGGCATATTTTT
* * * *
64312 CCTTCTAAGTCTACAACTCAGTGGCATCTTTTTCCTTTTAAGTCCACAACCCCGTGGCATTCTTT
1 CCTTCTAAGCCCACAACTCAGTGGCATC---TTCCTTTTAAGCCCACAACCCCGTGGCACTCTTT
* * *
64377 TTCCTTTTAAGTCCATAACTCTATGACA-CCTTTTTAAGCCCACAACTCTGTGGCACCTTTTACT
63 TTCCTTTTAAGTCCACAACTCCATGACATCCTTTTTAAGCCCACAACTCTGTGGCACCTTTTACC
*
64441 TTTTAAAGCCCACAACTACATGGCGCTATTTTT
128 TTTT-AAGCCCACAACTACATGGC-ATATTTTT
* * * *
64474 CCTTTTAAGCCCACGACTCAGTGGCAATC-T-CTTTTAAGCCCACAACTCTGTGGCACTCTTTTT
1 CCTTCTAAGCCCACAACTCAGTGGC-ATCTTCCTTTTAAGCCCACAACCCCGTGGCACTCTTTTT
* * * *
64537 CCTTTTAAGTCCACAACTCCGTGGCATCC-TTTTCAGTCCACAACTCTGTGGCACCCTTTTA
65 CCTTTTAAGTCCACAACTCCATGACATCCTTTTTAAGCCCACAACTCTGTGGCA-CCTTTTA
64598 AGTCCACAAC
Statistics
Matches: 371, Mismatches: 56, Indels: 49
0.78 0.12 0.10
Matches are distributed among these distances:
154 4 0.01
155 41 0.11
156 18 0.05
157 5 0.01
158 77 0.21
159 10 0.03
160 10 0.03
161 40 0.11
162 51 0.14
163 3 0.01
165 1 0.00
166 3 0.01
167 64 0.17
168 41 0.11
169 3 0.01
ACGTcount: A:0.22, C:0.31, G:0.11, T:0.36
Consensus pattern (158 bp):
CCTTCTAAGCCCACAACTCAGTGGCATCTTCCTTTTAAGCCCACAACCCCGTGGCACTCTTTTTC
CTTTTAAGTCCACAACTCCATGACATCCTTTTTAAGCCCACAACTCTGTGGCACCTTTTACCTTT
TAAGCCCACAACTACATGGCATATTTTT
Found at i:64545 original size:63 final size:61
Alignment explanation
Indices: 64441--64727 Score: 200
Period size: 63 Copynumber: 4.7 Consensus size: 61
64431 ACCTTTTACT
* * * *
64441 TTTTAAAGCCCACAACTAC-ATGGCGCTATTTTTCCTTTTAAGCCCACGACTCAGTGGCAATCTC
1 TTTT-AAGCCCACAACT-CTGTGGCACTCTTTTTCCTTTTAAGCCCACAACTCAGTGGC-ATC-C
* *
64505 TTTTAAGCCCACAACTCTGTGGCACTCTTTTTCCTTTTAAGTCCACAACTCCGTGGCATCC
1 TTTTAAGCCCACAACTCTGTGGCACTCTTTTTCCTTTTAAGCCCACAACTCAGTGGCATCC
* * * *
64566 TTTTCAGTCCACAACTCTGTGGCA--C-----CCTTTTAAGTCCACAACTCCGTGGCA-CC
1 TTTTAAGCCCACAACTCTGTGGCACTCTTTTTCCTTTTAAGCCCACAACTCAGTGGCATCC
* * * * * * *
64619 CTTTAAGTCCATAACTCCGTGGCAC-CTTTTTTCTTTTTAAAGCCTACAACTCTGTGGCACTCTT
1 TTTTAAGCCCACAACTCTGTGGCACTC-TTTTTCCTTTT-AAGCCCACAACTCAGTGGCA-----
64683 TTTCC
59 --TCC
** *
64688 TTTTAATTCCACAACTCTATGGCA-TCTTTTTCCTTTTAAG
1 TTTTAAGCCCACAACTCTGTGGCACTCTTTTTCCTTTTAAG
64728 TCCATGACTT
Statistics
Matches: 183, Mismatches: 22, Indels: 33
0.77 0.09 0.14
Matches are distributed among these distances:
53 22 0.12
54 27 0.15
59 1 0.01
60 5 0.03
61 40 0.22
62 4 0.02
63 45 0.25
64 4 0.02
67 3 0.02
68 10 0.05
69 22 0.12
ACGTcount: A:0.21, C:0.30, G:0.13, T:0.36
Consensus pattern (61 bp):
TTTTAAGCCCACAACTCTGTGGCACTCTTTTTCCTTTTAAGCCCACAACTCAGTGGCATCC
Found at i:64566 original size:27 final size:26
Alignment explanation
Indices: 64537--64648 Score: 170
Period size: 27 Copynumber: 4.2 Consensus size: 26
64527 CACTCTTTTT
64537 CCTTTTAAGTCCACAACTCCGTGGCA
1 CCTTTTAAGTCCACAACTCCGTGGCA
* *
64563 TCCTTTTCAGTCCACAACTCTGTGGCA
1 -CCTTTTAAGTCCACAACTCCGTGGCA
64590 CCCTTTTAAGTCCACAACTCCGTGGCA
1 -CCTTTTAAGTCCACAACTCCGTGGCA
* *
64617 CCCTTTAAGTCCATAACTCCGTGGCA
1 CCTTTTAAGTCCACAACTCCGTGGCA
64643 CCTTTT
1 CCTTTT
64649 TTCTTTTTAA
Statistics
Matches: 77, Mismatches: 8, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
26 29 0.38
27 48 0.62
ACGTcount: A:0.21, C:0.35, G:0.14, T:0.30
Consensus pattern (26 bp):
CCTTTTAAGTCCACAACTCCGTGGCA
Found at i:64607 original size:54 final size:53
Alignment explanation
Indices: 64537--64649 Score: 172
Period size: 53 Copynumber: 2.1 Consensus size: 53
64527 CACTCTTTTT
* * *
64537 CCTTTTAAGTCCACAACTCCGTGGCATCCTTTTCAGTCCACAACTCTGTGGCAC
1 CCTTTTAAGTCCACAACTCCGTGGCA-CCCTTTAAGTCCACAACTCCGTGGCAC
*
64591 CCTTTTAAGTCCACAACTCCGTGGCACCCTTTAAGTCCATAACTCCGTGGCAC
1 CCTTTTAAGTCCACAACTCCGTGGCACCCTTTAAGTCCACAACTCCGTGGCAC
*
64644 CTTTTT
1 CCTTTT
64650 TCTTTTTAAA
Statistics
Matches: 54, Mismatches: 5, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
53 28 0.52
54 26 0.48
ACGTcount: A:0.20, C:0.35, G:0.14, T:0.31
Consensus pattern (53 bp):
CCTTTTAAGTCCACAACTCCGTGGCACCCTTTAAGTCCACAACTCCGTGGCAC
Found at i:64975 original size:39 final size:39
Alignment explanation
Indices: 64920--65079 Score: 133
Period size: 39 Copynumber: 3.9 Consensus size: 39
64910 TGTTTTTAAA
* *
64920 ACCAATGTCGTTGGCCTTGAATCAGCACATTGGCGTAAG
1 ACCAATATCGCTGGCCTTGAATCAGCACATTGGCGTAAG
* *
64959 CCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTGTCTTTAAG
1 ACCAATATCGCTGGCCTTGAATCAGCACATTGG---C--G----TAAG
* * **
65007 ACCAATATCGCTGGCCTTGAAAT-TGCACACTGGCACAAG
1 ACCAATATCGCTGGCCTTG-AATCAGCACATTGGCGTAAG
* *
65046 TCCAATATCGCTGGCCTTGAATCAGCATATTGGC
1 ACCAATATCGCTGGCCTTGAATCAGCACATTGGC
65080 ACTTTTACCA
Statistics
Matches: 96, Mismatches: 14, Indels: 22
0.73 0.11 0.17
Matches are distributed among these distances:
38 3 0.03
39 58 0.60
42 1 0.01
44 1 0.01
45 1 0.01
48 29 0.30
49 3 0.03
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.27
Consensus pattern (39 bp):
ACCAATATCGCTGGCCTTGAATCAGCACATTGGCGTAAG
Found at i:65022 original size:87 final size:87
Alignment explanation
Indices: 64870--66127 Score: 433
Period size: 87 Copynumber: 14.0 Consensus size: 87
64860 TACCATCTTG
* * * * * *
64870 AGTCTAATATCGTTGGCCTTGAATCAGCATATTGGCACCTTGTTTTTAAAACCAATGTCGTTGGC
1 AGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTGTCTTTAAGACCAATATCGCTGGC
*
64935 CTTGAATCAGCACATTGGCGTA
66 CTTGAATCAGCACATTGGCATA
*
64957 AGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTGTCTTTAAGACCAATATCGCTGGC
1 AGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTGTCTTTAAGACCAATATCGCTGGC
* * *
65022 CTTGAAAT-TGCACACTGGCACA
66 CTTG-AATCAGCACATTGGCATA
* * * *
65044 AGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCA-CTTTTACCACCTTGAGTCCAATATCGC
1 AGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTGT----CTTTAAGACCAATATCGC
* * * *
65108 TGGCCGTAAATCAGCATATTAGCACCTTGTCTCTA
62 TGGCC-T---T--G-A-ATCAGCACATTGGC-ATA
** * * * * *
65143 AAACCAATGTCGCTGGCCTTGAATCATCACATTGGCA------C---AAGTCCAATATCACTGGC
1 AGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTGTCTTTAAGACCAATATCGCTGGC
*
65199 CTTGAATCAGCATATTGGCACCTTGTCTTTA
66 CTTGAATCAGCACATTGGCA---------TA
* * * * * *
65230 AGACCAATGTCGTTGGCCTTGAAAT-TGCACATTGGCA------C---AAGTCCAATATCGCTGG
1 AGTCCAATATCGCTGGCCTTG-AATCAGCATATTGGCACCTTGTCTTTAAGACCAATATCGCTGG
*
65285 CCTTGAATCAGCATATTGGCACTTTTACCA
65 CCTTGAATCAGCACATTGGCA----T---A
* * * * *
65315 TCTTGAGTCCAATATCGTTGGCCGTGAATCAGCATATTGGCACCTTGTCTCTAAAACCAATGTCG
1 -----AGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTGTCTTTAAGACCAATATCG
* * *
65380 CTGGCCTTGAATCATCATATTGGCACA
61 CTGGCCTTGAATCAGCACATTGGCATA
* * * *
65407 AGTCCAATATTGCTGGCCTTGAATCAGCATATTGGAACCTTGTCTTTAAGACCAATGTCGTTGGC
1 AGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTGTCTTTAAGACCAATATCGCTGGC
* *
65472 CTTGAAACAGCACATTGGCACA
66 CTTGAATCAGCACATTGGCATA
* * * * *
65494 AGTCTAATATCGCTAGCCTTGAATCAGCATATTGGCACCTT-TACCATCTTGAGTCCAATATCGT
1 AGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTGT--C-T-TTAAGACCAATATCGC
* *
65558 TGGCCATGAATCAGCATATTGGCACCTTGTCTCTA
62 TGGCCTTGAATCAGCACATTGGCA---------TA
* * * * *
65593 AGACCAATGTCGCTGGCCTTGAACCAGCACATTGGCA---------TAAGTCCAATATCGCTGGC
1 AGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTGTCTTTAAGACCAATATCGCTGGC
*
65649 CTTGAATCAGCATATTGGCACCTTGTCTTTA
66 CTTGAATCAGCACATTGGCA---------TA
* * * * * * *
65680 AGACCAATGTCGCTGGCCTTG-ATACAGCACATTAGCA------C---AAGTCTAATATTGCTGG
1 AGTCCAATATCGCTGGCCTTGAAT-CAGCATATTGGCACCTTGTCTTTAAGACCAATATCGCTGG
* * *
65735 CCTTGAATCAACATATTAGCACCTTTACCA
65 CCTTGAATCAGCACATTGGCA----T---A
* * * * *
65765 TCTTGAGTCCAATATTGTTGGCCGTGAAAT-AGCATATTGGCACCTTGTCTCTAAGACCAATGTC
1 -----AGTCCAATATCGCTGGCCTTG-AATCAGCATATTGGCACCTTGTCTTTAAGACCAATATC
*
65829 GCTGGCCTTGAATCAGCATATTGGCACCTTGTCTTTA
60 GCTGGCCTTGAATCAGCACATTGGCA---------TA
* * * *
65866 AGACCAATGTCGCTGGCCTTGAAAT-AGCACATTGGCA------C---AAGTCCAATATCGCTGG
1 AGTCCAATATCGCTGGCCTTG-AATCAGCATATTGGCACCTTGTCTTTAAGACCAATATCGCTGG
* *
65921 CCTTGAATAAGCATATTGGCACCTTTACCA
65 CCTTGAATCAGCACATTGGCA----T---A
* * * * *
65951 TCTTGAGTCCAATATCGTTGGCCGTGAATCAGCATATTGGCACCTTGTCTCTAAGACCAATGTTG
1 -----AGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTGTCTTTAAGACCAATATCG
66016 CTGGCCTTGAATCAGCACATTGGCATA
61 CTGGCCTTGAATCAGCACATTGGCATA
* * * * * *
66043 AGCCCAATATCGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGACCGATGTCGTTGG
1 AGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTT-GTCTTTAAGACCAATATCGCTGG
* *
66108 CCTTAAATTAGCACATTGGC
65 CCTTGAATCAGCACATTGGC
66128 CCCTTAACCA
Statistics
Matches: 936, Mismatches: 135, Indels: 199
0.74 0.11 0.16
Matches are distributed among these distances:
79 10 0.01
80 1 0.00
81 1 0.00
82 11 0.01
83 1 0.00
85 3 0.00
86 7 0.01
87 493 0.53
88 43 0.05
89 7 0.01
90 138 0.15
91 1 0.00
92 4 0.00
94 1 0.00
95 1 0.00
96 36 0.04
97 2 0.00
98 7 0.01
99 164 0.18
101 1 0.00
104 4 0.00
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.29
Consensus pattern (87 bp):
AGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTGTCTTTAAGACCAATATCGCTGGC
CTTGAATCAGCACATTGGCATA
Found at i:65102 original size:138 final size:137
Alignment explanation
Indices: 64960--65219 Score: 414
Period size: 138 Copynumber: 1.9 Consensus size: 137
64950 TGGCGTAAGC
* * * * *
64960 CCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTGTCTTTAAGACCAATATCGCTGGCCTT
1 CCAATATCGCTGGCCGTAAATCAGCATATTAGCACCTTGTCTCTAAAACCAATATCGCTGGCCTT
*
65025 GAA-ATTGCACACTGGCACAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACTTTTACC
66 GAATA-T-CACACTGGCACAAGTCCAATATCACTGGCCTTGAATCAGCATATTGGCACTTTTACC
65089 ACCTTGAGT
129 ACCTTGAGT
*
65098 CCAATATCGCTGGCCGTAAATCAGCATATTAGCACCTTGTCTCTAAAACCAATGTCGCTGGCCTT
1 CCAATATCGCTGGCCGTAAATCAGCATATTAGCACCTTGTCTCTAAAACCAATATCGCTGGCCTT
*
65163 GAATCATCACATTGGCACAAGTCCAATATCACTGGCCTTGAATCAGCATATTGGCAC
66 GAAT-ATCACACTGGCACAAGTCCAATATCACTGGCCTTGAATCAGCATATTGGCAC
65220 CTTGTCTTTA
Statistics
Matches: 112, Mismatches: 8, Indels: 4
0.90 0.06 0.03
Matches are distributed among these distances:
138 110 0.98
139 1 0.01
140 1 0.01
ACGTcount: A:0.27, C:0.27, G:0.18, T:0.28
Consensus pattern (137 bp):
CCAATATCGCTGGCCGTAAATCAGCATATTAGCACCTTGTCTCTAAAACCAATATCGCTGGCCTT
GAATATCACACTGGCACAAGTCCAATATCACTGGCCTTGAATCAGCATATTGGCACTTTTACCAC
CTTGAGT
Found at i:65209 original size:225 final size:225
Alignment explanation
Indices: 64818--65855 Score: 1657
Period size: 225 Copynumber: 4.6 Consensus size: 225
64808 TTGCACCATT
*
64818 AAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCA-TCTTTACCATCTTGAGTCTAATATCG
1 AAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACT-TTTACCATCTTGAGTCCAATATCG
* * * *
64882 TTGGCCTTGAATCAGCATATTGGCACCTTGTTTTTAAAACCAATGTCGTTGGCCTTGAATCAGCA
65 TTGGCCGTGAATCAGCATATTGGCACCTTGTCTCTAAAACCAATGTCGCTGGCCTTGAATCAGCA
** *
64947 CATTGGCGTAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTGTCTTTAAGACCAA
130 CATTGGCACAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTGTCTTTAAGACCAA
* ** *
65012 TATCGCTGGCCTTGAAATTGCACACTGGCAC
195 TGTCGCTGGCCTTGAAACAGCACATTGGCAC
* *
65043 AAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACTTTTACCACCTTGAGTCCAATATCGC
1 AAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACTTTTACCATCTTGAGTCCAATATCGT
* * *
65108 TGGCCGTAAATCAGCATATTAGCACCTTGTCTCTAAAACCAATGTCGCTGGCCTTGAATCATCAC
66 TGGCCGTGAATCAGCATATTGGCACCTTGTCTCTAAAACCAATGTCGCTGGCCTTGAATCAGCAC
*
65173 ATTGGCACAAGTCCAATATCACTGGCCTTGAATCAGCATATTGGCACCTTGTCTTTAAGACCAAT
131 ATTGGCACAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTGTCTTTAAGACCAAT
* **
65238 GTCGTTGGCCTTGAAATTGCACATTGGCAC
196 GTCGCTGGCCTTGAAACAGCACATTGGCAC
65268 AAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACTTTTACCATCTTGAGTCCAATATCGT
1 AAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACTTTTACCATCTTGAGTCCAATATCGT
* *
65333 TGGCCGTGAATCAGCATATTGGCACCTTGTCTCTAAAACCAATGTCGCTGGCCTTGAATCATCAT
66 TGGCCGTGAATCAGCATATTGGCACCTTGTCTCTAAAACCAATGTCGCTGGCCTTGAATCAGCAC
* *
65398 ATTGGCACAAGTCCAATATTGCTGGCCTTGAATCAGCATATTGGAACCTTGTCTTTAAGACCAAT
131 ATTGGCACAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTGTCTTTAAGACCAAT
*
65463 GTCGTTGGCCTTGAAACAGCACATTGGCAC
196 GTCGCTGGCCTTGAAACAGCACATTGGCAC
* * *
65493 AAGTCTAATATCGCTAGCCTTGAATCAGCATATTGGCACCTTTACCATCTTGAGTCCAATATCGT
1 AAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACTTTTACCATCTTGAGTCCAATATCGT
* * *
65558 TGGCCATGAATCAGCATATTGGCACCTTGTCTCTAAGACCAATGTCGCTGGCCTTGAACCAGCAC
66 TGGCCGTGAATCAGCATATTGGCACCTTGTCTCTAAAACCAATGTCGCTGGCCTTGAATCAGCAC
*
65623 ATTGGCATAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTGTCTTTAAGACCAAT
131 ATTGGCACAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTGTCTTTAAGACCAAT
* *
65688 GTCGCTGGCCTTGATACAGCACATTAGCAC
196 GTCGCTGGCCTTGAAACAGCACATTGGCAC
* * * * * *
65718 AAGTCTAATATTGCTGGCCTTGAATCAACATATTAGCACCTTTACCATCTTGAGTCCAATATTGT
1 AAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACTTTTACCATCTTGAGTCCAATATCGT
*
65783 TGGCCGTGAAAT-AGCATATTGGCACCTTGTCTCTAAGACCAATGTCGCTGGCCTTGAATCAGCA
66 TGGCCGTG-AATCAGCATATTGGCACCTTGTCTCTAAAACCAATGTCGCTGGCCTTGAATCAGCA
*
65847 TATTGGCAC
130 CATTGGCAC
65856 CTTGTCTTTA
Statistics
Matches: 761, Mismatches: 50, Indels: 4
0.93 0.06 0.00
Matches are distributed among these distances:
225 757 0.99
226 4 0.01
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (225 bp):
AAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACTTTTACCATCTTGAGTCCAATATCGT
TGGCCGTGAATCAGCATATTGGCACCTTGTCTCTAAAACCAATGTCGCTGGCCTTGAATCAGCAC
ATTGGCACAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTGTCTTTAAGACCAAT
GTCGCTGGCCTTGAAACAGCACATTGGCAC
Found at i:65324 original size:138 final size:137
Alignment explanation
Indices: 65182--65441 Score: 414
Period size: 138 Copynumber: 1.9 Consensus size: 137
65172 CATTGGCACA
* * * *
65182 AGTCCAATATCACTGGCCTTGAATCAGCATATTGGCACCTTGTCTTTAAGACCAATGTCGTTGGC
1 AGTCCAATATCACTGGCCGTGAATCAGCATATTGGCACCTTGTCTCTAAAACCAATGTCGCTGGC
65247 CTTGAA-ATTGCACATTGGCACAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACTTTT
66 CTTGAATA-T-CACATTGGCACAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACTTTT
65311 ACCATCTTG
129 ACCATCTTG
**
65320 AGTCCAATATCGTTGGCCGTGAATCAGCATATTGGCACCTTGTCTCTAAAACCAATGTCGCTGGC
1 AGTCCAATATCACTGGCCGTGAATCAGCATATTGGCACCTTGTCTCTAAAACCAATGTCGCTGGC
* *
65385 CTTGAATCATCATATTGGCACAAGTCCAATATTGCTGGCCTTGAATCAGCATATTGG
66 CTTGAAT-ATCACATTGGCACAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGG
65442 AACCTTGTCT
Statistics
Matches: 112, Mismatches: 8, Indels: 4
0.90 0.06 0.03
Matches are distributed among these distances:
138 110 0.98
139 1 0.01
140 1 0.01
ACGTcount: A:0.26, C:0.24, G:0.20, T:0.30
Consensus pattern (137 bp):
AGTCCAATATCACTGGCCGTGAATCAGCATATTGGCACCTTGTCTCTAAAACCAATGTCGCTGGC
CTTGAATATCACATTGGCACAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACTTTTAC
CATCTTG
Found at i:65549 original size:138 final size:136
Alignment explanation
Indices: 65406--66180 Score: 756
Period size: 138 Copynumber: 5.6 Consensus size: 136
65396 ATATTGGCAC
* * * *
65406 AAGTCCAATATTGCTGGCCTTGAATCAGCATATTGGAACCTTGTCTTTAAGACCAATGTCGTTGG
1 AAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTGTCTCTAAGACCAATGTCGCTGG
* *
65471 CCTTGAAACAGCACATTGGCACAAGTCTAATATCGCTAGCCTTGAATCAGCATATTGGCACCTT-
66 CCTTGAAACAGCACATTGGCACAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTG
65535 TACCATCTT
131 T--C-TCTT
* * *
65544 GAGTCCAATATCGTTGGCCATGAATCAGCATATTGGCACCTTGTCTCTAAGACCAATGTCGCTGG
1 AAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTGTCTCTAAGACCAATGTCGCTGG
* *
65609 CCTTGAACCAGCACATTGGCATAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTG
66 CCTTGAAACAGCACATTGGCACAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTG
65674 TCT-TT
131 TCTCTT
* * * * ** *
65679 AAGACCAATGTCGCTGGCCTTG-ATACAGCACATTAGCA-CAAG--TCT-A-A--TAT-T-GCTG
1 AAGTCCAATATCGCTGGCCTTGAAT-CAGCATATTGGCACCTTGTCTCTAAGACCAATGTCGCTG
* ** * * * *
65734 GCCTTGAATCAACATATTAGCACCTTTACCATCTTGAGTCCAATATTGTTGGCCGTGAAAT-AGC
65 GCCTTG-A--AAC-----AGCA-CATTGGCA-C--AAGTCCAATATCGCTGGCCTTG-AATCAGC
65798 ATATTGGCACCTTGTCTC-T
117 ATATTGGCACCTTGTCTCTT
* * *
65817 AAGACCAATGTCGCTGGCCTTGAATCAGCATATTGGCACCTTGTCTTTAAGACCAATGTCGCTGG
1 AAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTGTCTCTAAGACCAATGTCGCTGG
* *
65882 CCTTGAAATAGCACATTGGCACAAGTCCAATATCGCTGGCCTTGAATAAGCATATTGGCACCTT-
66 CCTTGAAACAGCACATTGGCACAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTG
65946 TACCATCTT
131 T--C-TCTT
* * * *
65955 GAGTCCAATATCGTTGGCCGTGAATCAGCATATTGGCACCTTGTCTCTAAGACCAATGTTGCTGG
1 AAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTGTCTCTAAGACCAATGTCGCTGG
* * * *
66020 CCTTGAATCAGCACATTGGCATAAGCCCAATATCGCTGGCCTTGAATCAGCACATTGGCACCTTC
66 CCTTGAAACAGCACATTGGCACAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTT-
*
66085 ATCT-TT
130 GTCTCTT
* * * * * * * * * *
66091 AAGACCGATGTCGTTGGCCTTAAATTAGCACATTGGCCCCTTAACCATCTTTAAGACCAAT-TCG
1 AAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTT----GTCTCTAAGACCAATGTCG
*
66155 CTGGCCTTGAATCAGCACATTGGCAC
62 CTGGCCTTGAAACAGCACATTGGCAC
66181 CTTCATCTTT
Statistics
Matches: 530, Mismatches: 70, Indels: 73
0.79 0.10 0.11
Matches are distributed among these distances:
126 10 0.02
127 2 0.00
128 2 0.00
129 2 0.00
130 1 0.00
131 1 0.00
132 3 0.01
134 12 0.02
135 69 0.13
136 37 0.07
137 5 0.01
138 313 0.59
139 39 0.07
140 14 0.03
141 2 0.00
142 1 0.00
143 1 0.00
144 2 0.00
145 2 0.00
146 2 0.00
147 10 0.02
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.29
Consensus pattern (136 bp):
AAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTGTCTCTAAGACCAATGTCGCTGG
CCTTGAAACAGCACATTGGCACAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTG
TCTCTT
Found at i:65864 original size:186 final size:186
Alignment explanation
Indices: 65630--66040 Score: 691
Period size: 186 Copynumber: 2.2 Consensus size: 186
65620 CACATTGGCA
* *
65630 TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTGTCTTTAAGACCAATGTCGCTG
1 TAAGACCAATGTCGCTGGCCTTGAATCAGCATATTGGCACCTTGTCTTTAAGACCAATGTCGCTG
* * *
65695 GCCTTGATACAGCACATTAGCACAAGTCTAATATTGCTGGCCTTGAATCAA-CATATTAGCACCT
66 GCCTTGAAACAGCACATTAGCACAAGTCCAATATCGCTGGCCTTGAAT-AAGCATATTAGCACCT
*
65759 TTACCATCTTGAGTCCAATATTGTTGGCCGTGAAAT-AGCATATTGGCACCTTGTCTC
130 TTACCATCTTGAGTCCAATATCGTTGGCCGTG-AATCAGCATATTGGCACCTTGTCTC
65816 TAAGACCAATGTCGCTGGCCTTGAATCAGCATATTGGCACCTTGTCTTTAAGACCAATGTCGCTG
1 TAAGACCAATGTCGCTGGCCTTGAATCAGCATATTGGCACCTTGTCTTTAAGACCAATGTCGCTG
* * *
65881 GCCTTGAAATAGCACATTGGCACAAGTCCAATATCGCTGGCCTTGAATAAGCATATTGGCACCTT
66 GCCTTGAAACAGCACATTAGCACAAGTCCAATATCGCTGGCCTTGAATAAGCATATTAGCACCTT
65946 TACCATCTTGAGTCCAATATCGTTGGCCGTGAATCAGCATATTGGCACCTTGTCTC
131 TACCATCTTGAGTCCAATATCGTTGGCCGTGAATCAGCATATTGGCACCTTGTCTC
* *
66002 TAAGACCAATGTTGCTGGCCTTGAATCAGCACATTGGCA
1 TAAGACCAATGTCGCTGGCCTTGAATCAGCATATTGGCA
66041 TAAGCCCAAT
Statistics
Matches: 212, Mismatches: 11, Indels: 4
0.93 0.05 0.02
Matches are distributed among these distances:
185 5 0.02
186 207 0.98
ACGTcount: A:0.26, C:0.25, G:0.20, T:0.30
Consensus pattern (186 bp):
TAAGACCAATGTCGCTGGCCTTGAATCAGCATATTGGCACCTTGTCTTTAAGACCAATGTCGCTG
GCCTTGAAACAGCACATTAGCACAAGTCCAATATCGCTGGCCTTGAATAAGCATATTAGCACCTT
TACCATCTTGAGTCCAATATCGTTGGCCGTGAATCAGCATATTGGCACCTTGTCTC
Found at i:66226 original size:100 final size:101
Alignment explanation
Indices: 66041--66227 Score: 295
Period size: 100 Copynumber: 1.9 Consensus size: 101
66031 CACATTGGCA
* * * *
66041 TAAGCCCAATATCGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGACCGATGTCGTT
1 TAAGACCAATATCGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGACCAATATCATT
*
66106 GGCCTTAAATTAGCACATTGGCCCCTTAACCATCTT
66 GGCCTTAAATCAGCACATTGGCCCCTTAACCATCTT
*
66142 TAAGACCAAT-TCGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCCAATATCATT
1 TAAGACCAATATCGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGACCAATATCATT
* *
66206 GGCCTTGAATCAGCATATTGGC
66 GGCCTTAAATCAGCACATTGGC
66228 ATCTTTAACA
Statistics
Matches: 78, Mismatches: 8, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
100 69 0.88
101 9 0.12
ACGTcount: A:0.26, C:0.27, G:0.17, T:0.30
Consensus pattern (101 bp):
TAAGACCAATATCGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGACCAATATCATT
GGCCTTAAATCAGCACATTGGCCCCTTAACCATCTT
Found at i:66228 original size:49 final size:49
Alignment explanation
Indices: 66041--66228 Score: 243
Period size: 49 Copynumber: 3.8 Consensus size: 49
66031 CACATTGGCA
*
66041 TAAGCCCAATATCGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
1 TAAGACCAATATCGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
* * * * * *
66090 TAAGACCGATGTCGTTGGCCTTAAATTAGCACATTGGCCCCTTAACCATCTT
1 TAAGACCAATATCGCTGGCCTTGAATCAGCACATTGGCACCTT---CATCTT
66142 TAAGACCAAT-TCGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
1 TAAGACCAATATCGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
* ** *
66190 TAAGTCCAATATCATTGGCCTTGAATCAGCATATTGGCA
1 TAAGACCAATATCGCTGGCCTTGAATCAGCACATTGGCA
66229 TCTTTAACAT
Statistics
Matches: 119, Mismatches: 16, Indels: 8
0.83 0.11 0.06
Matches are distributed among these distances:
48 15 0.13
49 61 0.51
51 28 0.24
52 15 0.13
ACGTcount: A:0.26, C:0.27, G:0.17, T:0.30
Consensus pattern (49 bp):
TAAGACCAATATCGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
Found at i:66251 original size:100 final size:101
Alignment explanation
Indices: 66041--66280 Score: 288
Period size: 100 Copynumber: 2.4 Consensus size: 101
66031 CACATTGGCA
* * *
66041 TAAGCCCAATATCGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGACCGATGTCGTT
1 TAAGCCCAATATCGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGACCAATATCATT
* *
66106 GGCCTTAAATTAGCACATTGGCCCCTTAACCATCTT
66 GGCCTTAAATCAGCACATTGGCCCCTTAACCATCTC
* *
66142 TAAGACCAAT-TCGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCCAATATCATT
1 TAAGCCCAATATCGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGACCAATATCATT
* * * *
66206 GGCCTTGAATCAGCATATTGGCATCTTTAA-CAT-TCC
66 GGCCTTAAATCAGCACATTGGC-CCCTTAACCATCT-C
* * * * **
66242 TAAGCCCAATGTCACCGACCTTGTCTCAGCACATTGGCA
1 TAAGCCCAATATCGCTGGCCTTGAATCAGCACATTGGCA
66281 TTTTTCTTCA
Statistics
Matches: 119, Mismatches: 17, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
99 1 0.01
100 81 0.68
101 37 0.31
ACGTcount: A:0.26, C:0.28, G:0.16, T:0.30
Consensus pattern (101 bp):
TAAGCCCAATATCGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGACCAATATCATT
GGCCTTAAATCAGCACATTGGCCCCTTAACCATCTC
Found at i:72291 original size:21 final size:21
Alignment explanation
Indices: 72267--72323 Score: 105
Period size: 21 Copynumber: 2.7 Consensus size: 21
72257 ATTTTATCCA
72267 AATGTATCGATACATTTGTAG
1 AATGTATCGATACATTTGTAG
*
72288 AATGTATCGATACATTTGTGG
1 AATGTATCGATACATTTGTAG
72309 AATGTATCGATACAT
1 AATGTATCGATACAT
72324 CCTACAAATG
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 35 1.00
ACGTcount: A:0.33, C:0.11, G:0.19, T:0.37
Consensus pattern (21 bp):
AATGTATCGATACATTTGTAG
Found at i:72403 original size:19 final size:19
Alignment explanation
Indices: 72379--72446 Score: 76
Period size: 19 Copynumber: 3.9 Consensus size: 19
72369 AATTCAACAA
72379 TTTGTATCGATACATAAGT
1 TTTGTATCGATACATAAGT
72398 TTTGTATCGATAC--AA--
1 TTTGTATCGATACATAAGT
*
72413 --TGCATCGATACATAAGT
1 TTTGTATCGATACATAAGT
*
72430 ATTGTATCGATACATAA
1 TTTGTATCGATACATAA
72447 TTAGCTACTG
Statistics
Matches: 41, Mismatches: 2, Indels: 12
0.75 0.04 0.22
Matches are distributed among these distances:
13 10 0.24
15 2 0.05
17 2 0.05
19 27 0.66
ACGTcount: A:0.35, C:0.13, G:0.15, T:0.37
Consensus pattern (19 bp):
TTTGTATCGATACATAAGT
Found at i:72504 original size:13 final size:13
Alignment explanation
Indices: 72486--72511 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
72476 CATTTTTCTG
72486 TGTATCGATACAT
1 TGTATCGATACAT
72499 TGTATCGATACAT
1 TGTATCGATACAT
72512 GGATCTTTGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:72508 original size:33 final size:33
Alignment explanation
Indices: 72466--72532 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
72456 GCCAAGGAAA
***
72466 TGTATCGATACATTTTTCTGTGTATCGATACAT
1 TGTATCGATACATGGATCTGTGTATCGATACAT
*
72499 TGTATCGATACATGGATCTTTGTATCGATACAT
1 TGTATCGATACATGGATCTGTGTATCGATACAT
72532 T
1 T
72533 TGGAAATTTT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.25, C:0.15, G:0.16, T:0.43
Consensus pattern (33 bp):
TGTATCGATACATGGATCTGTGTATCGATACAT
Found at i:74993 original size:53 final size:51
Alignment explanation
Indices: 74869--75255 Score: 218
Period size: 53 Copynumber: 7.4 Consensus size: 51
74859 CTCAATTCTC
* * * * *
74869 CACAATCGGGGATATTCCAACTCTGATTTTATTTTCAAGACA-CTAATTTT
1 CACAATCGGGGATACTCCAACTCCGATTTTATTTCCAAAACACCAAATTTT
*
74919 CTATAATCGGGGATACTCCAACTCCGATTTTATTTCCAAAAAACACCAAATTTT
1 C-ACAATCGGGGATACTCCAACTCCGATTTTATTTCC--AAAACACCAAATTTT
* * * * * **
74973 CACAATCGGGGATACTCCAACCCCG-TTAATCATCGGGGATACTC-TAACCCCGTTATTTT
1 CACAATCGGGGATACTCCAACTCCGATT--TTAT------TTC-CAAAACACC-AAATTTT
* * * ***
75032 --CGA--GGGGATACTCCAAC-CCTGACTTTATTTCCAAAATA-TTGATTTT
1 CACAATCGGGGATACTCCAACTCC-GATTTTATTTCCAAAACACCAAATTTT
* * * * * * *
75078 CATAATCGGGGATACTCCAACCCCGGTTTTATTGCTAAAACACTAATTTTT
1 CACAATCGGGGATACTCCAACTCCGATTTTATTTCCAAAACACCAAATTTT
* * *
75129 CCACAATCGGGGATACTCCAAC-CTCGGTTTTATTTTCAAAACACCAATTTTTT
1 -CACAATCGGGGATACTCCAACTC-CGATTTTATTTCCAAAACACCAA-ATTTT
** * * *
75182 CTTTAATCGGGGATACTCCAACTCCGATTTTATTTTCAAAAATACCAATTTTT
1 C-ACAATCGGGGATACTCCAACTCCGATTTTA-TTTCCAAAACACCAAATTTT
*
75235 CACAATCGAGGATACTCCAAC
1 CACAATCGGGGATACTCCAAC
75256 CTCGTTATCT
Statistics
Matches: 261, Mismatches: 47, Indels: 56
0.72 0.13 0.15
Matches are distributed among these distances:
46 6 0.02
47 1 0.00
48 5 0.02
50 28 0.11
51 39 0.15
52 59 0.23
53 63 0.24
54 29 0.11
55 15 0.06
56 1 0.00
57 2 0.01
58 5 0.02
59 5 0.02
60 2 0.01
61 1 0.00
ACGTcount: A:0.30, C:0.25, G:0.13, T:0.33
Consensus pattern (51 bp):
CACAATCGGGGATACTCCAACTCCGATTTTATTTCCAAAACACCAAATTTT
Found at i:75044 original size:28 final size:27
Alignment explanation
Indices: 74977--75050 Score: 96
Period size: 27 Copynumber: 2.7 Consensus size: 27
74967 AATTTTCACA
74977 ATCGGGGATACTCCAACCCCGTTAATC
1 ATCGGGGATACTCCAACCCCGTTAATC
* *
75004 ATCGGGGATACTCTAACCCCGTT-ATT
1 ATCGGGGATACTCCAACCCCGTTAATC
*
75030 TTCGAGGGGATACTCCAACCC
1 ATC--GGGGATACTCCAACCC
75051 TGACTTTATT
Statistics
Matches: 41, Mismatches: 4, Indels: 3
0.85 0.08 0.06
Matches are distributed among these distances:
26 4 0.10
27 22 0.54
28 15 0.37
ACGTcount: A:0.24, C:0.31, G:0.20, T:0.24
Consensus pattern (27 bp):
ATCGGGGATACTCCAACCCCGTTAATC
Found at i:75100 original size:50 final size:52
Alignment explanation
Indices: 75035--75256 Score: 180
Period size: 52 Copynumber: 4.3 Consensus size: 52
75025 TTATTTTCGA
* * * * * *
75035 GGGGATACTCCAACCCTGACTTTATTTCCAAAATATTGA-TTTT-CATAATC
1 GGGGATACTCCAACCCCGACTTTATTGCCAAAACACTAATTTTTCCACAATC
** *
75085 GGGGATACTCCAACCCCGGTTTTATTGCTAAAACACTAATTTTTCCACAATC
1 GGGGATACTCCAACCCCGACTTTATTGCCAAAACACTAATTTTTCCACAATC
* ** ** * ***
75137 GGGGATACTCCAACCTCGGTTTTATTTTCAAAACACCAATTTTTTCTTTAATC
1 GGGGATACTCCAACCCCGACTTTATTGCCAAAACACTAA-TTTTTCCACAATC
* * * * * *
75190 GGGGATACTCCAACTCCGATTTTATTTTCAAAAATACCAATTTTT-CACAATC
1 GGGGATACTCCAACCCCGACTTTA-TTGCCAAAACACTAATTTTTCCACAATC
*
75242 GAGGATACTCCAACC
1 GGGGATACTCCAACC
75257 TCGTTATCTC
Statistics
Matches: 140, Mismatches: 28, Indels: 6
0.80 0.16 0.03
Matches are distributed among these distances:
50 31 0.22
51 4 0.03
52 57 0.41
53 36 0.26
54 12 0.09
ACGTcount: A:0.30, C:0.24, G:0.12, T:0.34
Consensus pattern (52 bp):
GGGGATACTCCAACCCCGACTTTATTGCCAAAACACTAATTTTTCCACAATC
Found at i:75150 original size:52 final size:51
Alignment explanation
Indices: 75081--75256 Score: 201
Period size: 52 Copynumber: 3.4 Consensus size: 51
75071 TGATTTTCAT
*
75081 AATCGGGGATACTCCAACCCCGGTTTTATTGCTAAAACACTAATTTTTCCAC
1 AATCGGGGATACTCCAACCCCGGTTTTATT-CTAAAACACCAATTTTTCCAC
* * ***
75133 AATCGGGGATACTCCAACCTCGGTTTTATTTTCAAAACACCAATTTTTTCTTT
1 AATCGGGGATACTCCAACCCCGGTTTTATTCT-AAAACACCAA-TTTTTCCAC
* * * *
75186 AATCGGGGATACTCCAACTCCGATTTTATTTTCAAAAATACCAATTTTT-CAC
1 AATCGGGGATACTCCAACCCCGGTTTTA--TTCTAAAACACCAATTTTTCCAC
*
75238 AATCGAGGATACTCCAACC
1 AATCGGGGATACTCCAACC
75257 TCGTTATCTC
Statistics
Matches: 103, Mismatches: 17, Indels: 8
0.80 0.13 0.06
Matches are distributed among these distances:
51 1 0.01
52 55 0.53
53 36 0.35
54 9 0.09
55 2 0.02
ACGTcount: A:0.30, C:0.25, G:0.12, T:0.33
Consensus pattern (51 bp):
AATCGGGGATACTCCAACCCCGGTTTTATTCTAAAACACCAATTTTTCCAC
Found at i:75275 original size:28 final size:28
Alignment explanation
Indices: 75239--75315 Score: 100
Period size: 28 Copynumber: 2.8 Consensus size: 28
75229 ATTTTTCACA
* *
75239 ATCGAGGATACTCCAACCTCGTTATCTC
1 ATCGGGGATACTCCAACCCCGTTATCTC
*
75267 ATCGGGGATACTCCAACCCCGTTATTTC
1 ATCGGGGATACTCCAACCCCGTTATCTC
***
75295 CGAGGGGATACTCCAACCCCG
1 ATCGGGGATACTCCAACCCCG
75316 GCTTTATTCC
Statistics
Matches: 43, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 43 1.00
ACGTcount: A:0.23, C:0.34, G:0.19, T:0.23
Consensus pattern (28 bp):
ATCGGGGATACTCCAACCCCGTTATCTC
Found at i:75332 original size:263 final size:262
Alignment explanation
Indices: 74867--75366 Score: 790
Period size: 263 Copynumber: 1.9 Consensus size: 262
74857 TTCTCAATTC
* * *
74867 TCCACAATCGGGGATATTCCAACTCTGATTTTATTTTCAAGACACTAATTTTCTATAATCGGGGA
1 TCCACAATCGGGGATACTCCAACTCTGATTTTATTTTCAAAACACCAATTTTCTATAATCGGGGA
*
74932 TACTCCAACTCCGATTTTATTTCCAAAAAACACCAAATTTTCACAATCGGGGATACTCCAACCCC
66 TACTCCAACTCCGATTTTATTTCCAAAAAACACCAAATTTTCACAATCGAGGATACTCCAACCCC
* * * *
74997 GTTAATCATCGGGGATACTCTAACCCCGTTATTTTCGAGGGGATACTCCAACCCTGACTTTATTT
131 GTTAATCATCGGGGATACTCCAACCCCGTTATTTCCGAGGGGATACTCCAACCCCGACTTTATTC
75062 CCAAAATATTGATTT-TCATAATCGGGGATACTCCAACCCCGGTTTTATTGCTAAAACACTAATT
196 CCAAAATATTGATTTCTCATAATCGGGGATACTCCAACCCCGGTTTTATTGCTAAAACACTAATT
75126 TT
261 TT
* *
75128 TCCACAATCGGGGATACTCCAAC-CTCGGTTTTATTTTCAAAACACCAATTTTTTCTTTAATCGG
1 TCCACAATCGGGGATACTCCAACTCT-GATTTTATTTTCAAAACACCAA--TTTTCTATAATCGG
* * *
75192 GGATACTCCAACTCCGATTTTATTTTC-AAAAATACCAATTTTTCACAATCGAGGATACTCCAAC
63 GGATACTCCAACTCCGATTTTATTTCCAAAAAACACCAAATTTTCACAATCGAGGATACTCCAAC
* * *
75256 CTCGTTATCTCATCGGGGATACTCCAACCCCGTTATTTCCGAGGGGATACTCCAACCCCGGCTTT
128 CCCGTTA-ATCATCGGGGATACTCCAACCCCGTTATTTCCGAGGGGATACTCCAACCCCGACTTT
*
75321 ATTCCCAAAATATTGATTTCTCATAATTGGGGATACTCCAACCCCG
192 ATTCCCAAAATATTGATTTCTCATAATCGGGGATACTCCAACCCCG
75367 TTATTTTCGA
Statistics
Matches: 217, Mismatches: 17, Indels: 7
0.90 0.07 0.03
Matches are distributed among these distances:
260 2 0.01
261 41 0.19
262 40 0.18
263 109 0.50
264 25 0.12
ACGTcount: A:0.28, C:0.26, G:0.14, T:0.32
Consensus pattern (262 bp):
TCCACAATCGGGGATACTCCAACTCTGATTTTATTTTCAAAACACCAATTTTCTATAATCGGGGA
TACTCCAACTCCGATTTTATTTCCAAAAAACACCAAATTTTCACAATCGAGGATACTCCAACCCC
GTTAATCATCGGGGATACTCCAACCCCGTTATTTCCGAGGGGATACTCCAACCCCGACTTTATTC
CCAAAATATTGATTTCTCATAATCGGGGATACTCCAACCCCGGTTTTATTGCTAAAACACTAATT
TT
Found at i:75451 original size:78 final size:79
Alignment explanation
Indices: 75269--75472 Score: 234
Period size: 78 Copynumber: 2.6 Consensus size: 79
75259 GTTATCTCAT
* * **
75269 CGGGGATACTCCAACCCCGTTATTTCCGAGGGGATACTCCAACCCCGGCTTTATTCCCAAAATAT
1 CGGGGATACTCCAACCCCGTTATTTTCGAAGGGATACTCCAACCCCGAATTTATTCCCAAAATAT
* *
75334 TGATTTCTCATAAT
66 TGATTTCTCACAAC
* * * ** **
75348 TGGGGATACTCCAACCCCGTTATTTTCGAAGGGATACTCCAATCCC-AATTTTTTTTC-TGATCA
1 CGGGGATACTCCAACCCCGTTATTTTCGAAGGGATACTCCAACCCCGAATTTATTCCCAAAAT-A
75411 TTGATTTCTCACAAC
65 TTGATTTCTCACAAC
* *
75426 CGGGGATACTCCAGCCCCGTTATTTTC-AAGGGAACACTCCAACCCCG
1 CGGGGATACTCCAACCCCGTTATTTTCGAAGGG-ATACTCCAACCCCG
75473 TTATTATCTC
Statistics
Matches: 105, Mismatches: 17, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
77 7 0.07
78 56 0.53
79 42 0.40
ACGTcount: A:0.25, C:0.29, G:0.17, T:0.29
Consensus pattern (79 bp):
CGGGGATACTCCAACCCCGTTATTTTCGAAGGGATACTCCAACCCCGAATTTATTCCCAAAATAT
TGATTTCTCACAAC
Found at i:88237 original size:21 final size:21
Alignment explanation
Indices: 88184--88239 Score: 64
Period size: 21 Copynumber: 2.7 Consensus size: 21
88174 GTTTTGGGGG
88184 ATGTATC-TTACATTCCACAC
1 ATGTATCGTTACATTCCACAC
*
88204 ATG-ACTCGATACATT-CACAAC
1 ATGTA-TCGTTACATTCCAC-AC
88225 ATGTATCGTTACATT
1 ATGTATCGTTACATT
88240 TGGTATATTT
Statistics
Matches: 30, Mismatches: 2, Indels: 7
0.77 0.05 0.18
Matches are distributed among these distances:
19 1 0.03
20 8 0.27
21 20 0.67
22 1 0.03
ACGTcount: A:0.32, C:0.25, G:0.09, T:0.34
Consensus pattern (21 bp):
ATGTATCGTTACATTCCACAC
Found at i:89150 original size:57 final size:58
Alignment explanation
Indices: 89007--89775 Score: 224
Period size: 57 Copynumber: 12.9 Consensus size: 58
88997 GTGGGCTTTG
* * *
89007 AAGGCGTCCTTGCTCTTTGAGGACTGAAAGGTG-CACCAACTTGTGT-GGCTTTGAACAGAA
1 AAGGCGTCC-CGCTCTTTG-GGACTG-AAGGTGCCACCAACTTGGGTGGGCTTT-AAAAGAA
* **
89067 AA--CATCATGCT-TATTGAGGACT-AAGGTGCCACCAACTTGGGTGGGC-TTAAAAG-A
1 AAGGCGTCCCGCTCT-TTG-GGACTGAAGGTGCCACCAACTTGGGTGGGCTTTAAAAGAA
* *
89121 AAGGCGTCCCGCTCTTTGACGGA-TGAAGGT-CCACCATAATTGTGTGGGCTTT-AAAGAA
1 AAGGCGTCCCGCTCTTTG--GGACTGAAGGTGCCACCA-ACTTGGGTGGGCTTTAAAAGAA
** * *
89179 AAGTTGT-CCGCTCTTTGGGACTGAAGGGTTCCACCAAATGCTTGTGTGGGCTTTTTAAAAGTGA
1 AAGGCGTCCCGCTCTTTGGGACTGAA-GGTGCCACC-AA--CTTGGGTGGGC--TTTAAAA--GA
89243 A
58 A
* * * *
89244 AACGCATCCTGCTC-TTGCGGAATCTTTAAAGGTGCCACCAACTTGGGTGGGGCTTTAAAAG-A
1 AAGGCGTCCCGCTCTTTG-GG-A-C--TGAAGGTGCCACCAACTTGGGT-GGGCTTTAAAAGAA
* * **
89306 AAGGCGTCCCGCTCTTTGAGGACTGAAGACTGCGTGGCCACAAAATTGTATGGGCTTT-AAAGAA
1 AAGGCGTCCCGCTCTTTG-GGACTG-A-A--G-GT-GCCACCAACTTGGGTGGGCTTTAAAAGAA
* * * * * *
89370 AATGTGTCCCGCTCTTTGAGG-CCGAAGGTTTTGCCACCCAACTTGTGTGGGCTTTTACAG--
1 AAGGCGTCCCGCTCTTTG-GGACTGAAGG---TGCCA-CCAACTTGGGTGGGCTTTAAAAGAA
* * ** *
89430 -AGGTGTCCTGCTC-TTGAGGACTGGGAAAAATGCCACCAACTTGTGTGCGGCTTT------A
1 AAGGCGTCCCGCTCTTTG-GGACT--G-AAGGTGCCACCAACTTGGGTG-GGCTTTAAAAGAA
* *
89485 AA-GCTGTCCTG-TCTTTGGGGACTTGAAAGGTGCCACCAACTT-TGTGTGGCTTT----G-A
1 AAGGC-GTCCCGCTCTTT-GGGAC-TG-AAGGTGCCACCAACTTGGGTG-GGCTTTAAAAGAA
* * *
89540 AA-G-GTCCTGCTCTTGGCGGA-TGAAAGGTG-CACCCAAC-TGTTGTCGGGCTTTCGAAAAGAA
1 AAGGCGTCCCGCTCTTTG-GGACTG-AAGGTGCCA-CCAACTTG-GGT-GGGCTTT--AAAAGAA
* * * *
89600 AAAGCATCTCTGCT-TTTGGGACTAAAGGTGCCACCAAC-TGGGTGGGCTTTAAAAGAA
1 AAGGCGTC-CCGCTCTTTGGGACTGAAGGTGCCACCAACTTGGGTGGGCTTTAAAAGAA
* *
89657 AA-GCGTCTCCCGCTCTTTAGAGGACTGAAGGTG-CACCACCCTT-GTTGTGGCTTTTAGAAAGA
1 AAGGCG--TCCCGCTCTTT-G-GGACTGAAGGTGCCACCA-ACTTGGGTG-GGC-TTTA-AAAGA
89719 A
58 A
* * * *
89720 AATTTGTCGTCCCGCTCTTTAGGACCGAAGGTTGCCACCAAC-TGTGTGGGCTTTAA
1 AA---GGCGTCCCGCTCTTTGGGACTGAAGG-TGCCACCAACTTGGGTGGGCTTTAA
89776 GAGGTTTGTC
Statistics
Matches: 558, Mismatches: 62, Indels: 177
0.70 0.08 0.22
Matches are distributed among these distances:
51 3 0.01
52 14 0.03
53 16 0.03
54 21 0.04
55 36 0.06
56 50 0.09
57 67 0.12
58 41 0.07
59 40 0.07
60 37 0.07
61 42 0.08
62 38 0.07
63 42 0.08
64 34 0.06
65 43 0.08
66 13 0.02
67 7 0.01
68 3 0.01
69 8 0.01
70 3 0.01
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.27
Consensus pattern (58 bp):
AAGGCGTCCCGCTCTTTGGGACTGAAGGTGCCACCAACTTGGGTGGGCTTTAAAAGAA
Found at i:89445 original size:185 final size:178
Alignment explanation
Indices: 89089--89425 Score: 414
Period size: 192 Copynumber: 1.8 Consensus size: 178
89079 ATTGAGGACT
89089 AAGGTGCCACCAACTTGGGTGGGCTTAAAAGAAAGGCGTCCCGCTCTTTGACGGATGAAGGTCCA
1 AAGGTGCCACCAACTTGGGTGGGCTTAAAAGAAAGGCGTCCCGCTCTTTGACGGATGAAGGTCCA
* * *
89154 CCATAATTGTGTGGGCTTTAAAGAAAAGTTGTCCGCTCTTTGGGACTGAAGGGTTCCACCAAATG
66 CCAAAATTGTATGGGCTTTAAAGAAAAGTTGTCCGCTCTTTGGGACCGAAGGGTTCCACCAAA-G
89219 CTTGTGTGGGCTTTTTAAAAGTGAAAACGCATCCTGCTCTTGCGGAATCTTTA
130 CTTGTGTGGGCTTTTTAAAAGTG---ACG-ATCCTGCTCTTGCGGAATCTTTA
89272 AAGGTGCCACCAACTTGGGTGGGGCTTTAAAAGAAAGGCGTCCCGCTCTTTGA-GGACTGAAGAC
1 AAGGTGCCACCAACTTGGGT-GGGC-TTAAAAGAAAGGCGTCCCGCTCTTTGACGGA-TG-A-A-
89336 TGCGTGGCCA-CAAAATTGTATGGGCTTTAAAGAAAA-TGTGTCCCGCTCTTTGAGG-CCGAAGG
60 -G-GT--CCACCAAAATTGTATGGGCTTTAAAGAAAAGT-TGT-CCGCTCTTTG-GGACCGAAGG
* *
89398 TTTTGCCACCCAA-CTTGTGTGGGCTTTT
118 -GTT-CCACCAAAGCTTGTGTGGGCTTTT
89426 ACAGAGGTGT
Statistics
Matches: 134, Mismatches: 5, Indels: 21
0.84 0.03 0.13
Matches are distributed among these distances:
183 20 0.15
184 7 0.05
185 29 0.22
186 1 0.01
187 1 0.01
189 1 0.01
190 3 0.02
191 27 0.20
192 34 0.25
193 4 0.03
194 7 0.05
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (178 bp):
AAGGTGCCACCAACTTGGGTGGGCTTAAAAGAAAGGCGTCCCGCTCTTTGACGGATGAAGGTCCA
CCAAAATTGTATGGGCTTTAAAGAAAAGTTGTCCGCTCTTTGGGACCGAAGGGTTCCACCAAAGC
TTGTGTGGGCTTTTTAAAAGTGACGATCCTGCTCTTGCGGAATCTTTA
Found at i:89526 original size:55 final size:54
Alignment explanation
Indices: 89401--89590 Score: 164
Period size: 55 Copynumber: 3.4 Consensus size: 54
89391 CCGAAGGTTT
* * **
89401 TGCCACCCAACTTGTGTGGGCTTTTACAGAGGTGTCCTGCTCTTGAGGACTGGGAAAAA
1 TGCCACCCAACTTGTGTGGGC-TTTA-A-A-GTGTCCTGCTCTTGGGGACT-TGAAAGG
89460 TGCCA-CCAACTTGTGTGCGGCTTTAAAGCTGTCCTG-TCTTTGGGGACTTGAAAGG
1 TGCCACCCAACTTGTGTG-GGCTTTAAAG-TGTCCTGCTC-TTGGGGACTTGAAAGG
89515 TGCCA-CCAACTT-TGTGTGGCTTTGAAAG-GTCCTGCTCTTGGCGGA--TGAAAGG
1 TGCCACCCAACTTGTGTG-GGCTTT-AAAGTGTCCTGCTCTTGG-GGACTTGAAAGG
89567 TG-CACCCAAC-TGTTGTCGGGCTTT
1 TGCCACCCAACTTG-TGT-GGGCTTT
89591 CGAAAAGAAA
Statistics
Matches: 116, Mismatches: 5, Indels: 26
0.79 0.03 0.18
Matches are distributed among these distances:
51 3 0.03
52 14 0.12
53 19 0.16
54 16 0.14
55 23 0.20
56 16 0.14
57 1 0.01
58 16 0.14
59 8 0.07
ACGTcount: A:0.19, C:0.23, G:0.29, T:0.29
Consensus pattern (54 bp):
TGCCACCCAACTTGTGTGGGCTTTAAAGTGTCCTGCTCTTGGGGACTTGAAAGG
Found at i:89576 original size:52 final size:52
Alignment explanation
Indices: 89460--89595 Score: 138
Period size: 53 Copynumber: 2.5 Consensus size: 52
89450 CTGGGAAAAA
89460 TGCCACCAACTTGTGTGCGGCTTT-AAAGCTGTCCTGTCTTTGGGGACTTGAAAGG
1 TGCCACCAACTT-TGTG-GGCTTTGAAAGC-GTCCTGTCTTTGGGGAC-TGAAAGG
89515 TGCCACCAACTTTGTGTGGCTTTGAAAG-GTCCTG-CTCTTGGCGGA-TGAAAGG
1 TGCCACCAACTTTGTG-GGCTTTGAAAGCGTCCTGTCT-TTGG-GGACTGAAAGG
89567 TG-CACCCAACTGTTGTCGGGCTTTCGAAA
1 TGCCA-CCAACT-TTGT-GGGCTTT-GAAA
89596 AGAAAAAGCA
Statistics
Matches: 73, Mismatches: 1, Indels: 15
0.82 0.01 0.17
Matches are distributed among these distances:
51 2 0.03
52 17 0.23
53 20 0.27
54 18 0.25
55 16 0.22
ACGTcount: A:0.19, C:0.23, G:0.29, T:0.29
Consensus pattern (52 bp):
TGCCACCAACTTTGTGGGCTTTGAAAGCGTCCTGTCTTTGGGGACTGAAAGG
Found at i:89750 original size:353 final size:346
Alignment explanation
Indices: 89270--89911 Score: 812
Period size: 353 Copynumber: 1.8 Consensus size: 346
89260 GCGGAATCTT
*
89270 TAAAGGTGCCACCAACTTGGGTGGGGCTTTAAAAGAAAGGCGTCCCGCTCTTTGAGGACTGAAGA
1 TAAAGGTGCCACCAACTTGGGTGGGGCTTTAAAAGAAAAGCGTCCCGCTCTTTGAGGACTGAAGA
*
89335 CTGCGTGGCCACAAAATTGTATGGGCTTTAAAGAAAATGTGTCCCGCTCTTTGAGGCCGAAGGTT
66 CTGC--GACCAC-AAATTGTATGGGCTTTAAAGAAAATGTGTCCCGCTCTTTGAGGCCGAAGG--
89400 TTGCCACCCAACTTGTGTGGGCTTTTACAGAGG-TGTCCTGCTCT-TGAGGACTGGGA-AAAATG
126 TTGCCA-CCAAC-TGTGTGGGC-TTTA-AGAGGTTGTCCTGCTCTCTGAGGACT-GGACAAAATG
* * *
89462 CCACCAACTTGTG-TGCGGCTTT-AAAGCTGTCCTG-TC-TTTGGGGACTTGAAAGGTGCCA-CC
186 CCACCAACTTGTGTTG-GGCTTTGAAAG--GTCCTGCTCTTTTGAGGACTGGAAA-ATGCCACCC
*
89522 AACTTTGTGT-GGCTTTGAAAGGTCCTGCTCTTGGCGGATGAAAGGTGCACCCAACTGTTGTCGG
247 AACTTTGTGTGGGC-TTGAAAGGTCCTGCTCGTGGCGGATGAAAGGTGCACCCAACTGTTGTCGG
89586 GCTTTCGAAAAGAAAAAGCATCTCTGCTTTTGGGAC
311 GCTTTCGAAAAGAAAAAGCATCTCTGCTTTTGGGAC
89622 TAAAGGTGCCACCAAC-TGGGT-GGGCTTTAAAAGAAAAGCGTCTCCCGCTCTTTAGAGGACTGA
1 TAAAGGTGCCACCAACTTGGGTGGGGCTTTAAAAGAAAAGCG--TCCCGCTCTTT-GAGGACTGA
* **
89685 AG-GTGC-ACCAC-CCTTGT-TGTGGCTTTTAGAAAGAAAATTTGTCGTCCCGCTCTTT-AGGAC
63 AGACTGCGACCACAAATTGTATG-GGC-TTT--AAAGAAAA--TGT-GTCCCGCTCTTTGAGG-C
89745 CGAAGGTTGCCACCAACTGTGTGGGCTTTAAGAGGTTTGTCCTGCTCTCTGAGGACTGGACCAAA
120 CGAAGGTTGCCACCAACTGTGTGGGCTTTAAGAGG-TTGTCCTGCTCTCTGAGGACTGGA-CAAA
*
89810 TTGCCACCAACTTGTGTTGGGCTTTGAAAGGTCCTGCCTCTTTTGAGGACTGGAAAATGCCACCC
183 ATGCCACCAACTTGTGTTGGGCTTTGAAAGGTCCTG-CTCTTTTGAGGACTGGAAAATGCCACCC
*
89875 AACTTTGTGTGGGCTTGAAAGGTTCTGCTCGTGGCGG
247 AACTTTGTGTGGGCTTGAAAGGTCCTGCTCGTGGCGG
89912 GACTGGAAAC
Statistics
Matches: 256, Mismatches: 11, Indels: 45
0.82 0.04 0.14
Matches are distributed among these distances:
346 2 0.01
347 12 0.05
348 7 0.03
349 27 0.11
350 45 0.18
351 35 0.14
352 49 0.19
353 76 0.30
354 3 0.01
ACGTcount: A:0.22, C:0.22, G:0.28, T:0.28
Consensus pattern (346 bp):
TAAAGGTGCCACCAACTTGGGTGGGGCTTTAAAAGAAAAGCGTCCCGCTCTTTGAGGACTGAAGA
CTGCGACCACAAATTGTATGGGCTTTAAAGAAAATGTGTCCCGCTCTTTGAGGCCGAAGGTTGCC
ACCAACTGTGTGGGCTTTAAGAGGTTGTCCTGCTCTCTGAGGACTGGACAAAATGCCACCAACTT
GTGTTGGGCTTTGAAAGGTCCTGCTCTTTTGAGGACTGGAAAATGCCACCCAACTTTGTGTGGGC
TTGAAAGGTCCTGCTCGTGGCGGATGAAAGGTGCACCCAACTGTTGTCGGGCTTTCGAAAAGAAA
AAGCATCTCTGCTTTTGGGAC
Found at i:89772 original size:63 final size:60
Alignment explanation
Indices: 89624--89773 Score: 155
Period size: 63 Copynumber: 2.4 Consensus size: 60
89614 TTTGGGACTA
* *
89624 AAGGTGCCACCAACTGGGTGGGC-TTTAAAAGAAAAGCGTCTCCCGCTCTTTAGAGGACTG
1 AAGGTGCCACCAACTGTGTGGGCTTTTAAAAGAAAAGCGTCTCCCGCTCTTTA-AGGACCG
* **
89684 AAGGTG-CACCACCCT-TGTTGTGGCTTTTAGAAAGAAAATTTGTCGTCCCGCTCTTT-AGGACC
1 AAGGTGCCACCA-ACTGTG-TG-GGCTTTTA-AAAGAAAA-GCGTC-TCCCGCTCTTTAAGGACC
89746 G
60 G
89747 AAGGTTGCCACCAACTGTGTGGGCTTT
1 AAGG-TGCCACCAACTGTGTGGGCTTT
89774 AAGAGGTTTG
Statistics
Matches: 74, Mismatches: 6, Indels: 17
0.76 0.06 0.18
Matches are distributed among these distances:
59 6 0.08
60 10 0.14
61 3 0.04
62 4 0.05
63 24 0.32
64 9 0.12
65 18 0.24
ACGTcount: A:0.23, C:0.23, G:0.27, T:0.27
Consensus pattern (60 bp):
AAGGTGCCACCAACTGTGTGGGCTTTTAAAAGAAAAGCGTCTCCCGCTCTTTAAGGACCG
Found at i:89819 original size:59 final size:54
Alignment explanation
Indices: 89751--89952 Score: 157
Period size: 59 Copynumber: 3.6 Consensus size: 54
89741 GGACCGAAGG
89751 TTGCCACCAAC-TGTGTGGGCTTTAAGAGGTTTGTCCTGCTCTCTGAGGACTGGACCAAA
1 TTGCCACCAACTTGTGTGGGCTTTAA-AGGTTTG-CCT-CT-TCTGAGGACTGGA--AAA
* *
89810 TTGCCACCAACTTGTGTTGGGCTTTGAAAGGTCCTGCCTCTTTTGAGGACTGGAAAA
1 TTGCCACCAACTTGTG-TGGGCTTT-AAAGGT-TTGCCTCTTCTGAGGACTGGAAAA
* * *
89867 -TGCCACCCAACTTTGTGTGGGCTTGAAAGGTTCTG-CTCGTGGC-G-GGACTGGAAAC
1 TTGCCA-CCAAC-TTGTGTGGGCTTTAAAGGTT-TGCCTC-T-TCTGAGGACTGGAAAA
*
89922 TATG-CACCCACTTGT-TGGGCTTTGAAAGGTT
1 T-TGCCACCAACTTGTGTGGGCTTT-AAAGGTT
89953 GTCCTGCTCT
Statistics
Matches: 122, Mismatches: 9, Indels: 29
0.76 0.06 0.18
Matches are distributed among these distances:
53 7 0.06
54 11 0.09
55 17 0.14
56 17 0.14
57 17 0.14
58 5 0.04
59 23 0.19
60 6 0.05
61 15 0.12
62 4 0.03
ACGTcount: A:0.20, C:0.22, G:0.28, T:0.30
Consensus pattern (54 bp):
TTGCCACCAACTTGTGTGGGCTTTAAAGGTTTGCCTCTTCTGAGGACTGGAAAA
Found at i:89888 original size:57 final size:54
Alignment explanation
Indices: 89783--89951 Score: 161
Period size: 56 Copynumber: 3.0 Consensus size: 54
89773 TAAGAGGTTT
89783 GTCCTGCTC-TCTGAGGACTGGACCAAATTGCCA-CCAACTTGTGTTGGGCTTTGAAAG
1 GTCCTGCTCGT-TGAGGACTGGA--AAA-TGCCACCCAACTTGTG-TGGGCTTTGAAAG
*
89840 GTCCTGCCTCTTTTGAGGACTGGAAAATGCCACCCAACTTTGTGTGGGC-TTGAAAG
1 GTCCTG-CTC-GTTGAGGACTGGAAAATGCCACCCAAC-TTGTGTGGGCTTTGAAAG
* * *
89896 GTTCTGCTCGTGGCGGGACTGGAAACTATG-CACCC-ACTTGT-TGGGCTTTGAAAG
1 GTCCTGCTCGTTG-AGGACTGGAAA--ATGCCACCCAACTTGTGTGGGCTTTGAAAG
89950 GT
1 GT
89952 TGTCCTGCTC
Statistics
Matches: 99, Mismatches: 4, Indels: 21
0.80 0.03 0.17
Matches are distributed among these distances:
53 5 0.05
54 15 0.15
55 15 0.15
56 22 0.22
57 22 0.22
58 8 0.08
59 11 0.11
60 1 0.01
ACGTcount: A:0.20, C:0.23, G:0.28, T:0.28
Consensus pattern (54 bp):
GTCCTGCTCGTTGAGGACTGGAAAATGCCACCCAACTTGTGTGGGCTTTGAAAG
Found at i:89970 original size:56 final size:56
Alignment explanation
Indices: 89752--89976 Score: 172
Period size: 57 Copynumber: 4.0 Consensus size: 56
89742 GACCGAAGGT
* *
89752 TGCCA-CCAACTGTG-TGGGCTTT-AAGAGGTTTGTCCTGCTCTCT-GAGGACTGGACCAAA
1 TGCCACCCAACTTTGTTGGGCTTTGAA-AGG--TGTCCTGCTCT-TGGGGGACTGGA--AAA
* *
89810 TTGCCA-CCAACTTGTGTTGGGCTTTGAAA-G-GTCCTGCCTCTTTTGAGGACTGGAAAA
1 -TGCCACCCAACTT-TGTTGGGCTTTGAAAGGTGTCCTG-CTC-TTGGGGGACTGGAAAA
*
89867 TGCCACCCAACTTTGTGTGGGC-TTGAAAGGT-T-CTGCTCGTGGCGGGACTGGAAACTA
1 TGCCACCCAACTTTGT-TGGGCTTTGAAAGGTGTCCTGCTCTTGG-GGGACTGGAAA--A
89924 TG-CACCC-AC-TTGTTGGGCTTTGAAAGGTTGTCCTGCTCTTGGGGGACT-GAAAA
1 TGCCACCCAACTTTGTTGGGCTTTGAAAGG-TGTCCTGCTCTTGGGGGACTGGAAAA
89977 GACAAAAGTG
Statistics
Matches: 144, Mismatches: 5, Indels: 40
0.76 0.03 0.21
Matches are distributed among these distances:
53 6 0.04
54 14 0.10
55 20 0.14
56 29 0.20
57 35 0.24
58 4 0.03
59 22 0.15
60 3 0.02
61 9 0.06
62 2 0.01
ACGTcount: A:0.20, C:0.22, G:0.29, T:0.29
Consensus pattern (56 bp):
TGCCACCCAACTTTGTTGGGCTTTGAAAGGTGTCCTGCTCTTGGGGGACTGGAAAA
Done.