Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1742
Parameters: 2 7 7 80 10 50 1000
Length:  42033

Tables:   1   

This is table  1  of  1  ( 35 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1652--1678
1
27.0
1
100
0
54
100
0
0
0
0.00
3331--3411
20
4.0
20
75
9
83
60
1
1
37
1.13
3331--3406
9
7.7
9
70
18
53
60
1
1
36
1.13
9764--9815
23
2.2
23
86
6
68
44
15
15
25
1.85
10081--10143
23
2.7
23
72
13
58
65
0
0
34
0.93
10357--10386
3
10.0
3
100
0
60
33
0
0
66
0.92
11724--11770
16
2.9
16
75
12
60
51
2
0
46
1.13
18216--18241
2
13.0
2
100
0
52
50
0
0
50
1.00
19557--19586
6
5.0
6
95
0
51
50
13
0
36
1.42
20767--20805
20
2.0
20
85
5
53
43
12
5
38
1.65
22871--22895
9
2.8
9
100
0
50
92
0
0
8
0.40
24148--24172
13
1.9
13
100
0
50
68
0
0
32
0.90
24130--24172
19
2.3
18
96
4
77
67
0
0
32
0.91
24293--24341
22
2.2
22
100
0
98
59
8
0
32
1.27
24367--24393
6
4.5
6
100
0
54
48
14
18
18
1.82
24509--24560
15
3.5
15
73
7
52
44
0
0
55
0.99
24527--24618
11
8.6
11
70
21
63
39
0
0
60
0.97
24514--24587
20
3.7
20
68
21
55
40
0
0
59
0.97
24553--24609
21
2.5
22
78
18
64
36
0
0
63
0.95
24506--24618
45
2.6
40
81
17
120
39
0
0
60
0.97
26544--26583
2
20.0
2
94
0
71
47
0
2
50
1.14
26906--27050
31
4.3
32
80
13
148
55
0
3
40
1.16
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
27004--27050
17
2.8
17
77
9
60
55
0
6
38
1.26
26917--27016
15
6.4
16
80
7
116
56
0
3
41
1.15
27337--27370
17
2.1
17
88
5
52
26
5
0
67
1.13
30567--30600
2
17.0
2
87
0
50
47
0
5
47
1.26
31930--32007
32
2.5
31
77
6
77
41
1
1
56
1.15
32923--32956
8
4.2
8
100
0
68
76
0
0
23
0.79
32983--33057
15
5.8
13
70
20
50
45
1
2
50
1.24
34831--34863
16
2.1
16
94
0
57
57
0
0
42
0.98
34801--34862
26
2.3
24
75
20
61
58
3
0
38
1.15
35636--35690
17
3.4
17
72
25
55
54
1
0
43
1.10
36309--36378
25
2.8
26
72
16
67
44
0
0
55
0.99
40459--40489
2
15.5
2
100
0
62
51
0
0
48
1.00
41001--41066
26
2.5
27
82
7
73
27
4
22
45
1.72

Tables:   1

The End!