Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1743
Parameters: 2 7 7 80 10 50 1000
Length:  41710

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
325--523
99
2.0
100
96
1
364
29
20
12
37
1.90
4433--4459
13
2.1
13
100
0
54
40
14
14
29
1.86
11043--11166
52
2.4
51
90
1
194
27
17
18
36
1.94
11043--11186
52
2.8
52
84
5
177
29
17
18
34
1.94
11175--11199
13
1.9
13
100
0
50
36
16
16
32
1.90
11263--11287
13
1.9
13
100
0
50
32
16
16
36
1.90
11241--11307
33
2.0
33
88
0
98
40
13
11
34
1.81
11345--11386
21
2.0
21
90
0
66
35
14
14
35
1.86
14428--14458
15
2.1
15
93
0
53
12
22
16
48
1.80
18520--18545
13
2.0
13
100
0
52
30
15
15
38
1.88
18500--18563
32
2.0
33
84
3
85
28
14
15
42
1.86
20850--20989
51
2.7
51
91
0
226
47
8
15
28
1.75
20930--20967
20
1.9
20
94
0
67
47
10
10
31
1.72
24163--24194
15
2.1
15
100
0
64
71
6
12
9
1.29
26007--26062
20
2.8
19
86
10
69
37
14
17
30
1.90
26132--26157
13
2.0
13
100
0
52
38
15
15
30
1.88
26114--26178
32
2.0
34
90
6
107
44
15
12
27
1.82
29070--29189
53
2.3
51
82
5
159
21
16
16
45
1.86
29311--29381
3
23.7
3
73
11
56
30
1
4
63
1.22
30770--30837
19
3.9
19
78
21
85
35
11
14
38
1.83
30772--30834
32
2.0
32
96
0
117
34
12
15
36
1.86
30791--30815
13
1.9
13
100
0
50
36
16
16
32
1.90
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
30877--30902
13
2.0
13
100
0
52
30
15
15
38
1.88
30857--30923
33
2.0
33
88
0
98
25
14
16
43
1.86
33251--33382
51
2.5
51
79
8
142
30
25
10
33
1.90
33366--33442
28
2.8
28
87
0
100
23
33
19
23
1.97
33396--33598
79
2.6
79
82
3
230
24
30
16
29
1.96
33396--33628
79
2.9
77
77
6
218
25
28
14
30
1.95

Tables:   1

The End!