Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1744
Parameters: 2 7 7 80 10 50 1000
Length:  55095

Tables:   1   

This is table  1  of  1  ( 37 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1329--1546
34
6.5
34
88
1
296
24
7
27
40
1.82
1329--1548
67
3.3
67
88
1
323
24
7
27
40
1.82
3868--3899
8
4.2
8
88
11
50
34
0
0
65
0.93
4024--4066
22
2.0
23
86
9
63
58
0
0
41
0.98
4108--4167
21
2.8
22
82
10
79
71
0
0
28
0.86
4121--4183
21
3.2
20
84
8
78
73
0
0
26
0.84
4114--4172
20
3.0
21
88
9
81
71
0
0
28
0.87
4212--4260
21
2.3
21
92
0
80
40
14
6
38
1.71
7718--7764
3
15.7
3
95
0
85
65
0
0
34
0.93
11865--11913
23
2.1
24
92
3
82
53
22
0
24
1.47
12015--12046
17
1.9
17
93
6
57
53
0
0
46
1.00
16084--16142
31
1.9
31
89
0
91
33
20
11
33
1.89
17748--17799
24
2.2
24
86
6
70
67
0
0
32
0.91
18054--18079
4
6.5
4
100
0
52
76
0
0
23
0.78
18697--18759
28
2.2
28
85
0
81
39
7
3
49
1.48
20602--20641
18
2.0
21
86
13
59
52
0
0
47
1.00
20911--21089
94
1.9
94
83
2
234
42
6
6
45
1.54
21877--21954
18
4.5
17
74
16
63
53
0
38
7
1.30
23805--23829
1
25.0
1
100
0
50
100
0
0
0
0.00
25690--25784
6
15.8
6
89
0
136
0
43
6
50
1.27
25690--25784
8
11.9
8
89
0
136
0
43
6
50
1.27
33590--33623
13
2.4
15
90
9
54
73
2
0
23
0.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
33656--33696
18
2.2
19
86
4
57
46
2
0
51
1.14
33707--33744
14
2.7
15
88
12
62
65
0
0
34
0.93
33902--33954
21
2.5
22
77
17
58
37
0
1
60
1.08
33904--33940
19
2.1
18
85
14
51
37
0
2
59
1.12
33914--33956
11
4.0
10
80
14
50
34
0
0
65
0.93
33954--34014
19
3.2
19
77
9
70
50
1
0
47
1.10
40794--40927
67
2.0
67
100
0
268
40
17
13
28
1.88
43101--43136
18
2.1
18
89
5
56
47
0
2
50
1.15
43597--43645
20
2.6
18
80
6
53
46
2
0
51
1.12
44585--44627
21
2.0
22
86
4
61
41
0
2
55
1.12
47237--47314
37
2.2
35
84
11
97
47
0
1
51
1.09
47257--47321
29
2.3
30
87
10
93
46
0
0
53
1.00
47406--47430
3
8.3
3
100
0
50
68
0
0
32
0.90
48346--48378
3
11.0
3
100
0
66
66
0
0
33
0.92
50245--50362
60
2.0
60
93
0
200
22
16
27
33
1.96

Tables:   1

The End!