Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold1746
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 62007
ACGTcount: A:0.34, C:0.16, G:0.18, T:0.31
Found at i:914 original size:30 final size:30
Alignment explanation
Indices: 828--1046 Score: 184
Period size: 30 Copynumber: 7.4 Consensus size: 30
818 CACTAACTTG
* * *
828 TGTGGGCTGTGAAAAAAGTTACCACTAACTTT
1 TGTGGGCTTTGAAAAGAGTTACCACTGAC--T
* **
860 TATGCACTTTGAAAAGAGGTTACCACTGACT
1 TGTGGGCTTTGAAAAGA-GTTACCACTGACT
891 TGTGGGCTTTGAAAAGAGTTACCACT-AGCT
1 TGTGGGCTTTGAAAAGAGTTACCACTGA-CT
* ** *
921 TGTGGGCTTTGAAAA-AGGTGTCAATGACT
1 TGTGGGCTTTGAAAAGAGTTACCACTGACT
*
950 TGT-GGC-TTGAAAGGA-TT-CCACTGACT
1 TGTGGGCTTTGAAAAGAGTTACCACTGACT
* *
976 TGTGGGCTTTGAGAAG-GATTGCCACTGACT
1 TGTGGGCTTTGAAAAGAG-TTACCACTGACT
* * *
1006 TGTGGGCTTTGAGAAG-GATGCCACTAGACT
1 TGTGGGCTTTGAAAAGAGTTACCACT-GACT
1036 TGTGGGCTTTG
1 TGTGGGCTTTG
1047 GAGAAGGATG
Statistics
Matches: 157, Mismatches: 20, Indels: 22
0.79 0.10 0.11
Matches are distributed among these distances:
26 10 0.06
27 10 0.06
28 10 0.06
29 21 0.13
30 68 0.43
31 15 0.10
32 12 0.08
33 11 0.07
ACGTcount: A:0.25, C:0.16, G:0.28, T:0.31
Consensus pattern (30 bp):
TGTGGGCTTTGAAAAGAGTTACCACTGACT
Found at i:1072 original size:31 final size:29
Alignment explanation
Indices: 882--1060 Score: 206
Period size: 30 Copynumber: 6.1 Consensus size: 29
872 AAAGAGGTTA
* * *
882 CCACTGACTTGTGGGCTTTGAAAAGAGTTA
1 CCACTGACTTGTGGGCTTTGAGAAG-GATG
*
912 CCACT-AGCTTGTGGGCTTTGAAAAAGG-TG
1 CCACTGA-CTTGTGGGCTTTG-AGAAGGATG
* * *
941 TCAATGACTTGT-GGC-TTGA-AAGGATT
1 CCACTGACTTGTGGGCTTTGAGAAGGATG
967 CCACTGACTTGTGGGCTTTGAGAAGGATTG
1 CCACTGACTTGTGGGCTTTGAGAAGGA-TG
997 CCACTGACTTGTGGGCTTTGAGAAGGATG
1 CCACTGACTTGTGGGCTTTGAGAAGGATG
1026 CCACTAGACTTGTGGGCTTTGGAGAAGGATG
1 CCACT-GACTTGTGGGCTTT-GAGAAGGATG
1057 CCAC
1 CCAC
1061 ACTGCTCGTG
Statistics
Matches: 132, Mismatches: 7, Indels: 19
0.84 0.04 0.12
Matches are distributed among these distances:
25 4 0.03
26 12 0.09
27 6 0.05
28 7 0.05
29 22 0.17
30 62 0.47
31 19 0.14
ACGTcount: A:0.23, C:0.17, G:0.31, T:0.28
Consensus pattern (29 bp):
CCACTGACTTGTGGGCTTTGAGAAGGATG
Found at i:2149 original size:33 final size:32
Alignment explanation
Indices: 2107--2208 Score: 132
Period size: 33 Copynumber: 3.1 Consensus size: 32
2097 TCGTTACAAG
* *
2107 CAATCTATCGATACAATTCATCATGTATCGATA
1 CAATGTATCGATACAATT-ACCATGTATCGATA
*
2140 CAATGTATCGATACACTGTACCATGTATCGATA
1 CAATGTATCGATACAAT-TACCATGTATCGATA
**
2173 CAATGTATCGATACGTTGTACCATGTATCGATA
1 CAATGTATCGATACAAT-TACCATGTATCGATA
2206 CAA
1 CAA
2209 ACAGTGGTAG
Statistics
Matches: 63, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
33 62 0.98
34 1 0.02
ACGTcount: A:0.34, C:0.21, G:0.14, T:0.31
Consensus pattern (32 bp):
CAATGTATCGATACAATTACCATGTATCGATA
Found at i:2167 original size:20 final size:20
Alignment explanation
Indices: 2142--2179 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
2132 TATCGATACA
*
2142 ATGTATCGATACACTGTACC
1 ATGTATCGATACAATGTACC
2162 ATGTATCGATACAATGTA
1 ATGTATCGATACAATGTA
2180 TCGATACGTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.34, C:0.18, G:0.16, T:0.32
Consensus pattern (20 bp):
ATGTATCGATACAATGTACC
Found at i:2192 original size:13 final size:13
Alignment explanation
Indices: 2129--2186 Score: 65
Period size: 13 Copynumber: 4.9 Consensus size: 13
2119 ACAATTCATC
2129 ATGTATCGATACA
1 ATGTATCGATACA
2142 ATGTATCGATACA
1 ATGTATCGATACA
*
2155 CTGTA-C----C-
1 ATGTATCGATACA
2162 ATGTATCGATACA
1 ATGTATCGATACA
2175 ATGTATCGATAC
1 ATGTATCGATAC
2187 GTTGTACCAT
Statistics
Matches: 37, Mismatches: 2, Indels: 12
0.73 0.04 0.24
Matches are distributed among these distances:
7 4 0.11
8 2 0.05
12 2 0.05
13 29 0.78
ACGTcount: A:0.34, C:0.19, G:0.16, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:2281 original size:19 final size:19
Alignment explanation
Indices: 2237--2292 Score: 76
Period size: 19 Copynumber: 2.9 Consensus size: 19
2227 CTGCCAATCT
* **
2237 CATGTATCGACACAATTGTC
1 CATGTATCGATACAA-TGAA
2257 CATGTATCGATACAATGAA
1 CATGTATCGATACAATGAA
2276 CATGTATCGATACAATG
1 CATGTATCGATACAATG
2293 TATCGATACA
Statistics
Matches: 33, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
19 19 0.58
20 14 0.42
ACGTcount: A:0.36, C:0.20, G:0.16, T:0.29
Consensus pattern (19 bp):
CATGTATCGATACAATGAA
Found at i:2295 original size:13 final size:13
Alignment explanation
Indices: 2277--2303 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
2267 TACAATGAAC
2277 ATGTATCGATACA
1 ATGTATCGATACA
2290 ATGTATCGATACA
1 ATGTATCGATACA
2303 A
1 A
2304 AGCATAATGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.41, C:0.15, G:0.15, T:0.30
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:2873 original size:21 final size:22
Alignment explanation
Indices: 2841--2939 Score: 110
Period size: 22 Copynumber: 4.5 Consensus size: 22
2831 AGTTTTCGTT
*
2841 TTTCTCCCCCTTAATTAAAGAA
1 TTTCTCCCCCTTAATCAAAGAA
*
2863 TTTCTCCCCTTTAATCAAA-AA
1 TTTCTCCCCCTTAATCAAAGAA
* *
2884 TTTCTCCCCCTTAATCATAGCA
1 TTTCTCCCCCTTAATCAAAGAA
* ** **
2906 TTTCTCCCCTTTTGTCAAATCA
1 TTTCTCCCCCTTAATCAAAGAA
2928 TTTCTCCCCCTT
1 TTTCTCCCCCTT
2940 CGTCAAATCT
Statistics
Matches: 65, Mismatches: 11, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
21 19 0.29
22 46 0.71
ACGTcount: A:0.23, C:0.33, G:0.03, T:0.40
Consensus pattern (22 bp):
TTTCTCCCCCTTAATCAAAGAA
Found at i:2909 original size:43 final size:44
Alignment explanation
Indices: 2841--2939 Score: 137
Period size: 43 Copynumber: 2.3 Consensus size: 44
2831 AGTTTTCGTT
*
2841 TTTCTCCCCCTTAATTAAAGAATTTCTCCCCTTTAATCAAA-AA
1 TTTCTCCCCCTTAATCAAAGAATTTCTCCCCTTTAATCAAATAA
* * ** *
2884 TTTCTCCCCCTTAATCATAGCATTTCTCCCCTTTTGTCAAATCA
1 TTTCTCCCCCTTAATCAAAGAATTTCTCCCCTTTAATCAAATAA
2928 TTTCTCCCCCTT
1 TTTCTCCCCCTT
2940 CGTCAAATCT
Statistics
Matches: 49, Mismatches: 6, Indels: 1
0.88 0.11 0.02
Matches are distributed among these distances:
43 36 0.73
44 13 0.27
ACGTcount: A:0.23, C:0.33, G:0.03, T:0.40
Consensus pattern (44 bp):
TTTCTCCCCCTTAATCAAAGAATTTCTCCCCTTTAATCAAATAA
Found at i:4814 original size:13 final size:13
Alignment explanation
Indices: 4796--4822 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
4786 ATAGTAACCC
4796 ATGTATCGATACA
1 ATGTATCGATACA
4809 ATGTATCGATACA
1 ATGTATCGATACA
4822 A
1 A
4823 AGAATGTTGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.41, C:0.15, G:0.15, T:0.30
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:10942 original size:13 final size:13
Alignment explanation
Indices: 10902--10949 Score: 54
Period size: 13 Copynumber: 4.2 Consensus size: 13
10892 CCGTTACAAG
10902 CAATGTATCGATA
1 CAATGTATCGATA
10915 CAA--T-TC-AT-
1 CAATGTATCGATA
10923 C-ATGTATCGATA
1 CAATGTATCGATA
10935 CAATGTATCGATA
1 CAATGTATCGATA
10948 CA
1 CA
10950 CTATACCATG
Statistics
Matches: 29, Mismatches: 0, Indels: 12
0.71 0.00 0.29
Matches are distributed among these distances:
7 1 0.03
8 1 0.03
9 3 0.10
10 4 0.14
11 3 0.10
12 1 0.03
13 16 0.55
ACGTcount: A:0.38, C:0.19, G:0.12, T:0.31
Consensus pattern (13 bp):
CAATGTATCGATA
Found at i:10955 original size:20 final size:20
Alignment explanation
Indices: 10932--10969 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
10922 TCATGTATCG
*
10932 ATACAATGTATCGATACACT
1 ATACAATGTATCAATACACT
*
10952 ATACCATGTATCAATACA
1 ATACAATGTATCAATACA
10970 AATAGTGGTA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.42, C:0.21, G:0.08, T:0.29
Consensus pattern (20 bp):
ATACAATGTATCAATACACT
Found at i:10960 original size:33 final size:33
Alignment explanation
Indices: 10902--10970 Score: 95
Period size: 33 Copynumber: 2.1 Consensus size: 33
10892 CCGTTACAAG
* *
10902 CAATGTATCGATACAATTCATCATGTATCGATA
1 CAATGTATCGATACAATTCACCATGTATCAATA
*
10935 CAATGTATCGATACACTAT-ACCATGTATCAATA
1 CAATGTATCGATACAAT-TCACCATGTATCAATA
10968 CAA
1 CAA
10971 ATAGTGGTAG
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
33 31 0.97
34 1 0.03
ACGTcount: A:0.39, C:0.20, G:0.10, T:0.30
Consensus pattern (33 bp):
CAATGTATCGATACAATTCACCATGTATCAATA
Found at i:11043 original size:19 final size:19
Alignment explanation
Indices: 10999--11054 Score: 76
Period size: 19 Copynumber: 2.9 Consensus size: 19
10989 CTGCCAATCT
**
10999 CATGTATCGATACAATTGTC
1 CATGTATCGATACAA-TGAA
*
11019 CATGTATCGATGCAATGAA
1 CATGTATCGATACAATGAA
11038 CATGTATCGATACAATG
1 CATGTATCGATACAATG
11055 TATCGATACA
Statistics
Matches: 32, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
19 18 0.56
20 14 0.44
ACGTcount: A:0.34, C:0.18, G:0.18, T:0.30
Consensus pattern (19 bp):
CATGTATCGATACAATGAA
Found at i:11057 original size:13 final size:13
Alignment explanation
Indices: 11039--11065 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
11029 TGCAATGAAC
11039 ATGTATCGATACA
1 ATGTATCGATACA
11052 ATGTATCGATACA
1 ATGTATCGATACA
11065 A
1 A
11066 AGCATAATGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.41, C:0.15, G:0.15, T:0.30
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:11184 original size:33 final size:34
Alignment explanation
Indices: 11119--11186 Score: 102
Period size: 34 Copynumber: 2.0 Consensus size: 34
11109 GGGTTTTGAC
*
11119 CTTTGTAGGCTAAGTCAACCATAATGTATCGATA
1 CTTTGTAGGCTAAGCCAACCATAATGTATCGATA
* *
11153 CTTTGTAGGCTAAGCCAATC-TCATGTATCGATA
1 CTTTGTAGGCTAAGCCAACCATAATGTATCGATA
11186 C
1 C
11187 AATTGTCCAT
Statistics
Matches: 31, Mismatches: 3, Indels: 1
0.89 0.09 0.03
Matches are distributed among these distances:
33 13 0.42
34 18 0.58
ACGTcount: A:0.29, C:0.21, G:0.18, T:0.32
Consensus pattern (34 bp):
CTTTGTAGGCTAAGCCAACCATAATGTATCGATA
Found at i:11186 original size:175 final size:175
Alignment explanation
Indices: 10991--11332 Score: 684
Period size: 175 Copynumber: 2.0 Consensus size: 175
10981 GGTAGCCACT
10991 GCCAATCTCATGTATCGATACAATTGTCCATGTATCGATGCAATGAACATGTATCGATACAATGT
1 GCCAATCTCATGTATCGATACAATTGTCCATGTATCGATGCAATGAACATGTATCGATACAATGT
11056 ATCGATACAAAGCATAATGTATCGATACATCTAGTGTGTATCGATACATTCAAGGGTTTTGACCT
66 ATCGATACAAAGCATAATGTATCGATACATCTAGTGTGTATCGATACATTCAAGGGTTTTGACCT
11121 TTGTAGGCTAAGTCAACCATAATGTATCGATACTTTGTAGGCTAA
131 TTGTAGGCTAAGTCAACCATAATGTATCGATACTTTGTAGGCTAA
11166 GCCAATCTCATGTATCGATACAATTGTCCATGTATCGATGCAATGAACATGTATCGATACAATGT
1 GCCAATCTCATGTATCGATACAATTGTCCATGTATCGATGCAATGAACATGTATCGATACAATGT
11231 ATCGATACAAAGCATAATGTATCGATACATCTAGTGTGTATCGATACATTCAAGGGTTTTGACCT
66 ATCGATACAAAGCATAATGTATCGATACATCTAGTGTGTATCGATACATTCAAGGGTTTTGACCT
11296 TTGTAGGCTAAGTCAACCATAATGTATCGATACTTTG
131 TTGTAGGCTAAGTCAACCATAATGTATCGATACTTTG
11333 GAGTATTTTT
Statistics
Matches: 167, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
175 167 1.00
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Consensus pattern (175 bp):
GCCAATCTCATGTATCGATACAATTGTCCATGTATCGATGCAATGAACATGTATCGATACAATGT
ATCGATACAAAGCATAATGTATCGATACATCTAGTGTGTATCGATACATTCAAGGGTTTTGACCT
TTGTAGGCTAAGTCAACCATAATGTATCGATACTTTGTAGGCTAA
Found at i:11218 original size:19 final size:19
Alignment explanation
Indices: 11174--11229 Score: 76
Period size: 19 Copynumber: 2.9 Consensus size: 19
11164 AAGCCAATCT
**
11174 CATGTATCGATACAATTGTC
1 CATGTATCGATACAA-TGAA
*
11194 CATGTATCGATGCAATGAA
1 CATGTATCGATACAATGAA
11213 CATGTATCGATACAATG
1 CATGTATCGATACAATG
11230 TATCGATACA
Statistics
Matches: 32, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
19 18 0.56
20 14 0.44
ACGTcount: A:0.34, C:0.18, G:0.18, T:0.30
Consensus pattern (19 bp):
CATGTATCGATACAATGAA
Found at i:11232 original size:13 final size:13
Alignment explanation
Indices: 11214--11240 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
11204 TGCAATGAAC
11214 ATGTATCGATACA
1 ATGTATCGATACA
11227 ATGTATCGATACA
1 ATGTATCGATACA
11240 A
1 A
11241 AGCATAATGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.41, C:0.15, G:0.15, T:0.30
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:14883 original size:20 final size:21
Alignment explanation
Indices: 14834--14892 Score: 77
Period size: 22 Copynumber: 2.8 Consensus size: 21
14824 AATTTTAGCT
14834 AGATGTATCGATACATTAGGTA
1 AGATGTATCGATACATTA-GTA
14856 AGATGTATCGATACATT-G-A
1 AGATGTATCGATACATTAGTA
*
14875 AGAATGTATCAATACATT
1 AG-ATGTATCGATACATT
14893 CATCCATGTA
Statistics
Matches: 35, Mismatches: 1, Indels: 4
0.88 0.03 0.10
Matches are distributed among these distances:
19 3 0.09
20 15 0.43
22 17 0.49
ACGTcount: A:0.39, C:0.10, G:0.19, T:0.32
Consensus pattern (21 bp):
AGATGTATCGATACATTAGTA
Found at i:16867 original size:476 final size:474
Alignment explanation
Indices: 15478--23568 Score: 9045
Period size: 476 Copynumber: 17.0 Consensus size: 474
15468 GTCTACACTA
* * * * *
15478 CCTAATCCTAAAAAGAAT-GGAGATTAGTATGAGTATTCATGTTTGTCGTT-TTTAAGAGTCAAA
1 CCTAATCCTGAAAAGAATAGG-GATCAGTATGACTATTCAAGTTTGTC-TTATTTAAGAGACAAA
* * * * * * * * *
15541 CTTTGATTTTTTCAAAAATGATAGAAAGAAATGCTTTTCTTGTGATACCAAAGCATCAATGTCCT
64 CTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGATCCCAAAGCATCAATGTCTT
* ** * * * * * * **
15606 GTATCTTAATGAAAAGAATGTGTTTTTAGCTTTCCAGTCTTCAAAAGAATAGAGACTATTACAAG
129 GTATCCTAATGAAGGGAATGTG-TTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTGTTATGAG
* * * ** * *
15671 AATCGATGCTTATCTTATTTAAGGTATGAACTTTGACATTATGGAAAATAGGGCAAAGAAAAGAC
193 AATCGATGCTTGTCTTATTTAAGGGAAGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGAT
15736 TTTCATGCAAAAGAAAATCA-CTAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCT
258 TTTCATGCAAAAGAAAATCATC-AATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCT
* ** * * *
15800 AATCACAAAATGAATAAAGATAATTACTCA-AATACCTATTTGTCTCATTTGAGGCATGAACTTA
322 AATCACAAAATGAATGAAGATCTTTACT-AGAAT-CTTGTTTGTCTCATTTGAGGCACGAACTTA
* * * * * * *
15864 AACTTTGCAAAAATTGGTGGGAAAAAAGCCTTTCTTGCGAAATCAAAGCACCAATATGATATGTG
385 GACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATG-TGTATC
*
15929 CTAATGAGAAGAATATGTTTATGGTG
449 CTAATGAGAAGACTATGTTTATGGTG
** * * * * * * *
15955 CCTAATCCTTCAAAGAA-CGAGGATTAGCATGAGTATTCATGTTTGTCTTTTTTAAGAAACAAAC
1 CCTAATCCTGAAAAGAATAG-GGATCAGTATGACTATTCAAGTTTGTCTTATTTAAGAGACAAAC
* * * * * *
16019 TTTGATTCTATCAAAAACGATGGAAAGAAAAGCATTTCTTGCTATCCCAAGGCATCAATATCATG
65 TTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGATCCCAAAGCATCAATGTCTTG
* * * *
16084 TATCCTAACGAAGGGAATGTGATTTGGCTTCCCAATCTTGAAAAGAATGGAAATAACTGTTATGG
130 TATCCTAATGAAGGGAATGTGTTTTGGCTTCCCAATCTTGAAAAGAATGG--A-GACTGTTATGA
* * * * * * *
16149 GAATCCAT-CATTGTCTTGTTTAAAGGATA-AACTTTTATTTTAAGGAAAATAGCGTATAGAAAA
192 GAATCGATGC-TTGTCTTATTTAAGGGA-AGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAA
*
16212 GATTTTCATGCAAAAGAAAATCATCAATATCATTTACCCTAATGAGGAGAATGTGTTTATAGTGC
255 GATTTTCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGC
* * * * * * * *
16277 CTAATCACAAAATAAATAAAGATCATTATTAGAAACCATGTTTGTCTCGTTTAAGGCACGAACTT
320 CTAATCACAAAATGAATGAAGATCTTTACTAG-AATCTTGTTTGTCTCATTTGAGGCACGAACTT
* * *
16342 AGACTTTACAAAAATTTGTAGGCAAAAAA-CCTTTCTTGCAAAACCAAAGCATCAATATGATGTA
384 AGACTTTACAAAAATTGGT-GGGAAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATG-TGTA
* *
16406 TCCTAATAAGAAGACTATGTTTATGCTG
447 TCCTAATGAGAAGACTATGTTTATGGTG
** * * * * *
16434 CCTAATCCTGAAAAGAATAGAAATTAGTATAAGTATTCATGTTTGT-TGTATTTAAGAGTCAAAC
1 CCTAATCCTGAAAAGAATAGGGATCAGTATGACTATTCAAGTTTGTCT-TATTTAAGAGACAAAC
* ** * ** * *
16498 TTTGATTCTCTCAAAAATAGAGGAAAGAAAAGCTTTTCTTGTAATCCCAATGCATCAATGTCATG
65 TTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGATCCCAAAGCATCAATGTCTTG
* * * *
16563 TATCCTAATGAAAGGAGTGTGTTTTGGCTTCTCAATCTTGAAAAGAATGGCGACTGTTATGAGAA
130 TATCCTAATGAAGGGAATGTGTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTGTTATGAGAA
* * * * *
16628 TCGATGTTTGTCTTACTTAAGGGAAGAACTTTGATTTTAAGGGAAGTAGGGCAAAGAAAAGGTTT
195 TCGATGCTTGTCTTATTTAAGGGAAGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTT
* * * * *
16693 TCATGCAAAAAAAAATCTTCAATATCATTTGTCCTAATGATGAGAATGTGTTTATAGTGCCTAAG
260 TCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAAT
* * * *
16758 AACAAAATGAATAAAGATCATTACTAGAATCCTTGTTTTTCTCATTTGAGGCACGAACTTAGACT
325 CACAAAATGAATGAAGATCTTTACTAGAAT-CTTGTTTGTCTCATTTGAGGCACGAACTTAGACT
* * ** *
16823 TTAAAAAAATTGGTAGGAAAAAAGTTTTTCTTGCGAAACCAAAGCATCAATATGATGTATCATAA
389 TTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATG-TGTATCCTAA
* * *
16888 TGAGAAAACTACGTTTATCGTG
453 TGAGAAGACTATGTTTATGGTG
** * * * * ** * * * *
16910 CCTAATCCCAAAAATAACAAGGATTAGTATGAGAATTCATGTTTGTCGTATTTAAGAGATAAATT
1 CCTAATCCTGAAAAGAATAGGGATCAGTATGACTATTCAAGTTTGTCTTATTTAAGAGACAAACT
* * * * * * *
16975 TTCATTCTATGAAAAATGGTGTAAAGAAAATCTTTTCTTGCGATACCGAAA-CATCAATGTCTTA
66 TTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGAT-CCCAAAGCATCAATGTCTTG
* * * * ** * * ** * *
17039 TATCCAAATGAAGGAAATGTATTTTTGGCTTCCTAGGCATGCAAAGAAAAGAGACTATTACGAGA
130 TATCCTAATGAAGGGAATGT-GTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTGTTATGAGA
* ** * * * * * * * * *
17104 ATCAATGCTCATCATATTTATGGCATGAACTTTGATTTAAAGGATAATTGGGTAAAAAAAAG-TT
194 ATCGATGCTTGTCTTATTTAAGGGAAGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATT
* * * * *
17168 TTCCATGCAAAAGAAAATCATTAGTATCATTTATCTTGATGAGGAGAATGTGTTTATAGTGTCTA
259 TT-CATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTA
* * * ** *
17233 ATCGCAAAATGAATGAAGATCATTACTGGAATCCAGTTTGTCTCATTTGAGGCACGAA-TTGAAA
323 ATCACAAAATGAATGAAGATCTTTACTAGAATCTTGTTTGTCTCATTTGAGGCACGAACTT-AGA
* * *
17297 CTTTTA-AAAAATTGGTGGGAAAAAAGCCTTTCGTGCAAAACCAAAGCATCAATATCGTGTAACC
387 C-TTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATAT-GTGTATCC
* *
17361 TAAAGAGAAGACTATGTTTATGGTA
450 TAATGAGAAGACTATGTTTATGGTG
* *
17386 CC-AATCCTGAAAAGTATGGGGATCAGTATGACTATTCAAGTTTGTCTTATTTAAGAGACAAACT
1 CCTAATCCTGAAAAGAATAGGGATCAGTATGACTATTCAAGTTTGTCTTATTTAAGAGACAAACT
*
17450 TTGATTCTATCAAAAACGGTGG-AA-AAAAGCTTTTCTTGTGATCCCAAAGCATCAATGTCTTGT
66 TTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGATCCCAAAGCATCAATGTCTTGT
* * * * **
17513 ATACTAATGAAGGGAATGTGTTTTGGCTTTCCAATCTTAAAAAGAATGGAGACTCTTACAAGAAT
131 ATCCTAATGAAGGGAATGTGTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTGTTATGAGAAT
* * * * ** *
17578 TGATGCTTGTCTTATTTAAAGGATGAACTTTGATTTTAAGGAAAATAAGGTGAAGAAAAGATTTA
196 CGATGCTTGTCTTATTTAAGGGAAGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTT
* *
17643 CATACAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAAAATGTGTTTATAGTGCCTAATC
261 CATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATC
* * * * * * *
17708 ACAAAATAAATGAAGATCTTTAGTAGAATTCATGTTTGTCTTATTTGTGGTACGAACATAGACTT
326 ACAAAATGAATGAAGATCTTTACTAGAA-TCTTGTTTGTCTCATTTGAGGCACGAACTTAGACTT
* * * * *
17773 TTCAAAAATTGGTGGAAAAAAAGGCTTTTCTTGCTAAACCAAAGCATTAATATGATGTATCCTAA
390 TACAAAAATTGGTGGGAAAAAA-GCCTTTCTTGCGAAACCAAAGCATCAATATG-TGTATCCTAA
* **
17838 TGCGAAGGTTATGTTTATGGTG
453 TGAGAAGACTATGTTTATGGTG
* * * * *
17860 CCTAATCCTGAAAAGAACAGGGATTAGTATGAGTATTCATGTTTGTCGTATTTAAGAGACAAACT
1 CCTAATCCTGAAAAGAATAGGGATCAGTATGACTATTCAAGTTTGTCTTATTTAAGAGACAAACT
** * * * *
17925 TTGATTCTATCAAAAATAGTGGAAAGAAAAGCTTTTCTTGTGA-CATCAACA-CATCAATGGCAT
66 TTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGATC-CCAA-AGCATCAATGTCTT
* * * * * * * *
17988 GTATCCTAGTGAAGAGAATGAGTTTTTGGGTTCCCAGTCTTGAAAAGAAAGGACACTGTTACGAG
129 GTATCCTAATGAAGGGAATGTG-TTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTGTTATGAG
* * * * * *
18053 AATCGATGCTCGTCTTGTTTAAGGTATGAACTTTGATTTAAAGGAAAATAGGGTAAAGAGAAA-A
193 AATCGATGCTTGTCTTATTTAAGGGAAGAACTTTGATTTTAAGGAAAATAGGGCAAAGA-AAAGA
* * * *
18117 TTTCCATGCAAAAGAAAATCAAT-AATATCATTTATCCTAATCAAGAAAAAATGTGTTTATAGTG
257 TTTTCATGCAAAAGAAAATC-ATCAATATCATTTATCCTAAT-GAG-GAGAATGTGTTTATAGTG
* * * * * * * *
18181 CCTAATCCCAAAATGAATGAAGGTCATTACGAGAATACATGTTTGTTTCATTTGAGGAATGAACT
319 CCTAATCACAAAATGAATGAAGATCTTTACTAGAAT-CTTGTTTGTCTCATTTGAGGCACGAACT
** * * *
18246 TAGACTTTACAAAAATTGGTAAGAAAAATGCCCTTCTTGCGAACCCAAAGCATCAATATTGTGTA
383 TAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATA-TGTGTA
* * *
18311 TCCTAAAGAGAAGACTATGCTTACGGTG
447 TCCTAATGAGAAGACTATGTTTATGGTG
* *
18339 CCTAATCCTGAAAAGAATGGGGATCATTATGACTATTCAAGTTTGTCTTATTTAAGAGACAAACT
1 CCTAATCCTGAAAAGAATAGGGATCAGTATGACTATTCAAGTTTGTCTTATTTAAGAGACAAACT
* * * * * *
18404 TTGACTCTATCAAAAACGGTGGAAAGAAGAGCTTTTCTTGTGATCCCAAAGCATTAATGTCATGC
66 TTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGATCCCAAAGCATCAATGTCTTGT
* *
18469 ATCCTAATGAAAGGAATGTGTTTTGGCTTCCCAATCTTGAAAAGAATGGCGACTGTTATGAGAAT
131 ATCCTAATGAAGGGAATGTGTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTGTTATGAGAAT
* * * *
18534 CGACGCTTGTCTTATTTAAGAGATGAACTTTGATTTTAAGGAAAGTAGGGCAAAGAAAAGATTTT
196 CGATGCTTGTCTTATTTAAGGGAAGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTT
* * * * * *
18599 CATGTAAAAGAAAATCATGAATATCATTTTTCCTAATGAGGAGAAAGTATTTATAGTACCTAATC
261 CATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATC
** * * * * * *
18664 ACAAAATGTTTGAAGATCTTTACTAGAATTCATGTTTGTCTTATTTGTGGTACGAACATAGAATT
326 ACAAAATGAATGAAGATCTTTACTAGAA-TCTTGTTTGTCTCATTTGAGGCACGAACTTAGACTT
* *
18729 TAAAAAAATTGGTGGGAAAAAAGCCTTTCTTGCG-AACCGAAAGCATCAATATCGTGTACCCTAA
390 TACAAAAATTGGTGGGAAAAAAGCCTTTCTTGCGAAACC-AAAGCATCAATAT-GTGTATCCTAA
* * *
18793 TAAGAAGGC-AAGTTTATGGTG
453 TGAGAAGACTATGTTTATGGTG
* *
18814 CCTAGTCATGAAAAGAATAGGGATCAGTATGACTATTCAAGTTTGTCTTATTTAAGAGACAAACT
1 CCTAATCCTGAAAAGAATAGGGATCAGTATGACTATTCAAGTTTGTCTTATTTAAGAGACAAACT
** ** *
18879 TTGATTCTATCAAAAATAGTGGAAAGAAAAATTTTTCTTGCGA-CACCAAAGCTTCAATGTCTTG
66 TTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGATC-CCAAAGCATCAATGTCTTG
* * * * *
18943 TATCCTAATGAAGGGATTGCGTTTTGGCTTCCCAAACTTGAAAAGAATGGAGATTATTATGAGAA
130 TATCCTAATGAAGGGAATGTGTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTGTTATGAGAA
* * * * *
19008 TCGATGCTT-T-TTTTTTACA-AGATA-AACTTTAATTTTAAGGAAAATATGGCAAAAAAAAGAT
195 TCGATGCTTGTCTTATTTA-AGGGA-AGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGAT
* * * **
19069 TTTCACGCAAAAGAAAATCATCAATACCATTTATAC-AAAAAGGGAGAATGTGTTTATAGTGCCT
258 TTTCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGA-GGAGAATGTGTTTATAGTGCCT
* * * *
19133 AATTACAAAATGAATGATGACCTTTACTATAATCTATGTTTGTCTCATTTGAGGCACGAACTTAG
322 AATCACAAAATGAATGAAGATCTTTACTAGAATCT-TGTTTGTCTCATTTGAGGCACGAACTTAG
* * *
19198 ACTTTACAAAAATTAGTGGGAAAAAAGCCTTTCTTGCGAAACCAAAGAATCAATATGATGAATGC
386 ACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATG-TGTAT-C
19263 C-AATGAGAAGACTATGTTTATGGTG
449 CTAATGAGAAGACTATGTTTATGGTG
** * * * *
19288 CCTAATCCTGAAAAGAACGGGGATTAGCATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACT
1 CCTAATCCTGAAAAGAATAGGGATCAGTATGACTATTCAAGTTTGTCTTATTTAAGAGACAAACT
* * * * *
19353 TTGATTCTATAAAAAACGGTGGAAATAAAAGGTTTTCTGGCGA-CACCAAAACATCAATGTCTTG
66 TTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGATC-CCAAAGCATCAATGTCTTG
* * * * * **
19417 TATCCTAATGAAGGGAATGTGTTTTTGGCTTCCCAATCTGGAAAAGAAAGGAAATTGCTACAAGA
130 TATCCTAATGAAGGGAATGTG-TTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTGTTATGAGA
* * * * * *
19482 A-CTGATGCTTGTCATATTTAAGGTACA-AACTTTGATTTAAAAGGAAACTAGGGTAAAAAAAAA
194 ATC-GATGCTTGTCTTATTTAAGGGA-AGAACTTTGATTT-TAAGGAAAATAGGG-CAAAGAAAA
* * *
19545 GATTTCCATGCAAAAGAAAA-CAATTAATATCATTTATCCTGATGAGGAGAATGTGTTTATAGTG
255 GATTTTCATGCAAAAGAAAATC-ATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTG
* * * *
19609 CCAAATCACAAAATGAATGAAGATCATTACTAGAATCTATGTTTGTCTCACTTGAGGCATGAACT
319 CCTAATCACAAAATGAATGAAGATCTTTACTAGAATCT-TGTTTGTCTCATTTGAGGCACGAACT
* * * *
19674 TAGACTTTACGAAAATTGGTGAG-AAAATGCCTTTCTTGCGAACCCAAAGCATCAATATTGTGTA
383 TAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATA-TGTGTA
* * *
19738 TCCTAATGAGAAGACTGTGCTTACGGTG
447 TCCTAATGAGAAGACTATGTTTATGGTG
* * * *
19766 CCTAATCTTGAAAAGAATAGGGATCATTATGACTATTCAAGTTTGTCTTATTTGAGAGACAAAGT
1 CCTAATCCTGAAAAGAATAGGGATCAGTATGACTATTCAAGTTTGTCTTATTTAAGAGACAAACT
* * *
19831 TTGATTCTATCAAAAACGGTGGAAAGAAAAGC-TTTCTTGCGATCCCAACGCATCAATGTCATGC
66 TTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGATCCCAAAGCATCAATGTCTTGT
** * * *
19895 ATCCTAATGAAAAGAATGTGTTTTGGCTTCCCAATCTTAAAAAGAATGGATACTGTTA-CAGGAA
131 ATCCTAATGAAGGGAATGTGTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTGTTATGA-GAA
* ** *
19959 TTGATGCTTGTCTTATTTAAGGGCTGAACTTTGATTTTAAGGAAAGTAGGGCAAAGAAAAGATTT
195 TCGATGCTTGTCTTATTTAAGGGAAGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTT
* * * * * *
20024 TCATGTAAAAGAAAATCATGAATATCATTTTTCCTAATGAGGAGAAAGTATTTATAGTACCTAAT
260 TCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAAT
** * * * * * *
20089 CACAAAATGTTTGAAGATCTTTACTAGAATTCATGTTTGTCTTATTTGTGGTACGAACATAGAAT
325 CACAAAATGAATGAAGATCTTTACTAGAA-TCTTGTTTGTCTCATTTGAGGCACGAACTTAGACT
* *
20154 TTAAAAAAATTGGTGGGAAAAAAGCCTTTCTTGCG-AACCGAAAGCATCAATATCGTGTACCCTA
389 TTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGCGAAACC-AAAGCATCAATAT-GTGTATCCTA
* * *
20218 ATAAGAAGGCTAAGTTTATGGTG
452 ATGAGAAGACTATGTTTATGGTG
* *
20241 CCTAGTCATGAAAAGAATAGGGATCAGTATGACTATTCAAGTTTGTCTTATTTAAGAGACAAACT
1 CCTAATCCTGAAAAGAATAGGGATCAGTATGACTATTCAAGTTTGTCTTATTTAAGAGACAAACT
** ** *
20306 TTGATTCTATCAAAAATAGTGGAAAGAAAAATTTTTCTTGCGA-CACCAAAGCTTCAATGTCTTG
66 TTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGATC-CCAAAGCATCAATGTCTTG
* * * * *
20370 TATCCTAATGAAGGGATTGCGTTTTGGCTTCCCAAACTTGAAAAGAATGGAGATTATTATGAGAA
130 TATCCTAATGAAGGGAATGTGTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTGTTATGAGAA
* * * *
20435 TCGATGCTT-T-TTTTTTACA-GGATA-AACTTTAATTTTAAGGAAAATATGGCAAAAAAAAGAT
195 TCGATGCTTGTCTTATTTA-AGGGA-AGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGAT
* * * **
20496 TTTCACGCAAAAGAAAATCATCAATACCATTTATAC-AAAAAGGGAGAATGTGTTTATAGTGCCT
258 TTTCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGA-GGAGAATGTGTTTATAGTGCCT
* * * *
20560 AATTACAAAATGAATGATGACCTTTACTATAATCTATGTTTGTCTCATTTGAGGCACGAACTTAG
322 AATCACAAAATGAATGAAGATCTTTACTAGAATCT-TGTTTGTCTCATTTGAGGCACGAACTTAG
* * *
20625 ACTTTACAAAAATTAGTGGGAAAAAAGCCTTTCTTGCGAAACCAAAGAATCAATATGATGAATGC
386 ACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATG-TGTAT-C
20690 C-AATGAGAAGACTATGTTTATGGTG
449 CTAATGAGAAGACTATGTTTATGGTG
** * * * *
20715 CCTAATCCTGAAAAGAACGGGGATTAGCATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACT
1 CCTAATCCTGAAAAGAATAGGGATCAGTATGACTATTCAAGTTTGTCTTATTTAAGAGACAAACT
* * * * *
20780 TTGATTCTATAAAAAACGGTGGAAATAAAAGGTTTTCTGGCGA-CACCAAAACATCAATGTCTTG
66 TTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGATC-CCAAAGCATCAATGTCTTG
* * * * **
20844 TATCCTAATGAAGGGAATGTGTTTTTGGCTTCCCAATCTGGAAAAGAAAGGAAACTGCTACAAGA
130 TATCCTAATGAAGGGAATGTG-TTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTGTTATGAGA
* * * * * *
20909 A-CTGATGCTTGTCATATTTAAGGTACA-AACTTTGATTTAAAAGGAAACTAGGGTAAAAAAAAA
194 ATC-GATGCTTGTCTTATTTAAGGGA-AGAACTTTGATTT-TAAGGAAAATAGGG-CAAAGAAAA
* * *
20972 GATTTCCATGCAAAAGAAAA-CAATTAATATCATTTATCCTGATGAGGAGAATGTGTTTATAGTG
255 GATTTTCATGCAAAAGAAAATC-ATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTG
* * * *
21036 CCAAATCACAAAATGAATGAAGATCATTACTAGAATCTATGTTTGTCTCACTTGAGGCATGAACT
319 CCTAATCACAAAATGAATGAAGATCTTTACTAGAATCT-TGTTTGTCTCATTTGAGGCACGAACT
* * * *
21101 TAGACTTTACGAAAATTGGTGAG-AAAATGCCTTTCTTGCGAACCCAAAGCATCAATATTGTGTA
383 TAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATA-TGTGTA
* * *
21165 TCCTAATGAGAAGACTGTGCTTACGGTG
447 TCCTAATGAGAAGACTATGTTTATGGTG
* * * *
21193 CCTAATCTTGAAAAGAATAGGGATCATTATGACTATTCAAGTTTGTCTTATTTGAGAGACAAAGT
1 CCTAATCCTGAAAAGAATAGGGATCAGTATGACTATTCAAGTTTGTCTTATTTAAGAGACAAACT
* * *
21258 TTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGATCCCAACGCATCAATGTCATGC
66 TTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGATCCCAAAGCATCAATGTCTTGT
** * *
21323 ATCCTAATGAAAAGAATGTGTTTTGGCTTCCCAATCTTAAAAAGAATGGATACTGTTAT-AGGAA
131 ATCCTAATGAAGGGAATGTGTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTGTTATGA-GAA
* ** *
21387 TTGATGCTTGTCTTATTTAAGGGCTGAACTTTGATTTTAAGGAAAGTAGGGCAAAGAAAAGATTT
195 TCGATGCTTGTCTTATTTAAGGGAAGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTT
* * * * * *
21452 TCATGTAAAAGAAAATCATGAATATCATTTTTCCTAATGAGGAGAAAGTATTTATAGTACCTAAT
260 TCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAAT
** * * * * * *
21517 CACAAAATGTTTGAAGATCTTTACTAGAATTCATGTTTGTCTTATTTGTGGTACGAACATAGAAT
325 CACAAAATGAATGAAGATCTTTACTAGAA-TCTTGTTTGTCTCATTTGAGGCACGAACTTAGACT
* *
21582 TTAAAAAAATTGGTGGGAAAAAAGCCTTTCTTGCG-AACCGAAAGCATCAATATCGTGTACCCTA
389 TTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGCGAAACC-AAAGCATCAATAT-GTGTATCCTA
* * *
21646 ATAAGAAGGCTAAGTTTATGGTG
452 ATGAGAAGACTATGTTTATGGTG
* * *
21669 CCTAGTCATGAAAAGAATAGGGATCAATATGACTATTCAAGTTTGTCTTATTTAAGAGACAAACT
1 CCTAATCCTGAAAAGAATAGGGATCAGTATGACTATTCAAGTTTGTCTTATTTAAGAGACAAACT
** ** *
21734 TTGATTCTATCAAAAATAGTGGAAAGAAAAATTTTTCTTGCGA-CACCAAAGCTTCAATGTCTTG
66 TTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGATC-CCAAAGCATCAATGTCTTG
* * * * *
21798 TATCCTAATGAAGGGATTGCGTTTTGGCTTCCCAAACTTGAAAAGAATGGAGATTATTATGAGAA
130 TATCCTAATGAAGGGAATGTGTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTGTTATGAGAA
* * * *
21863 TCGATGCTT-T-TTTTTTACA-GGATA-AACTTTAATTTTAAGGAAAATATGGCAAAAAAAAGAT
195 TCGATGCTTGTCTTATTTA-AGGGA-AGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGAT
* * * **
21924 TTTCACGCAAAAGAAAATCATCAATACCATTTATAC-AAAAAGGGAGAATGTGTTTATAGTGCCT
258 TTTCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGA-GGAGAATGTGTTTATAGTGCCT
* * * *
21988 AATTACAAAATGAATGATGACCTTTACTATAATCTATGTTTGTCTCATTTGAGGCACGAACTTAG
322 AATCACAAAATGAATGAAGATCTTTACTAGAATCT-TGTTTGTCTCATTTGAGGCACGAACTTAG
* * *
22053 A-ATTACAAAAATTAGTGGGAAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATGATGAATGC
386 ACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATG-TGTAT-C
22117 C-AATGAGAAGACTATGTTTATGGTG
449 CTAATGAGAAGACTATGTTTATGGTG
** * * * *
22142 CCTAATCCTGAAAAGAACGGGGATTAGCATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACT
1 CCTAATCCTGAAAAGAATAGGGATCAGTATGACTATTCAAGTTTGTCTTATTTAAGAGACAAACT
* * * * * *
22207 TTGATTCTATAAAAAATGGTGGAAATAAAAGGTTTTCTGGCGA-CACCAAAACATCAATGTCTTG
66 TTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGATC-CCAAAGCATCAATGTCTTG
* * * * **
22271 TATCCTAATGAAGGGAATGTGTTTTTGGCTTCCCAATCTGGAAAAGAAAGGAAACTGCTACAAGA
130 TATCCTAATGAAGGGAATGTG-TTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTGTTATGAGA
* * * * * *
22336 A-CTGATGCTTGTCATATTTAAGGTGCA-AACTTTGATTTAAAAGGAAACTAGGGTAAAAAAAAA
194 ATC-GATGCTTGTCTTATTTAAGG-GAAGAACTTTGATTT-TAAGGAAAATAGGG-CAAAGAAAA
* * * *
22399 GATTTCCATGCAAAAGAAAACCATTAATATCATTTATCCTGATGAGGAGAATGTGTTTATAGTGC
255 GATTTTCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGC
* * * *
22464 CAAATCACAAAATGAATGAAGATCATTACTAGAATCTATGTTTGTCTCACTTGAGGCATGAACTT
320 CTAATCACAAAATGAATGAAGATCTTTACTAGAATCT-TGTTTGTCTCATTTGAGGCACGAACTT
* * * * *
22529 AGACTTTACGAAAATTGGTGAG-AAAATGCCTTTCTTGCGAACCCAAAGAATCAATATTGTGTAT
384 AGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATA-TGTGTAT
* * *
22593 CCTAATGAGAAGACTGTGCTTACGGTG
448 CCTAATGAGAAGACTATGTTTATGGTG
* * * *
22620 CCTAATCTTGAAAAGAATAGGGATCATTATGACTATTCAAGTTTGTCTTATTTGAGAGACAAAGT
1 CCTAATCCTGAAAAGAATAGGGATCAGTATGACTATTCAAGTTTGTCTTATTTAAGAGACAAACT
* * *
22685 TTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGATCCCAACGCATCAATGTCATGC
66 TTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGATCCCAAAGCATCAATGTCTTGT
** * * *
22750 ATCCTAATGAAAAGAATGTGTTTTGGCTTCCCAATCTTAAAAAGAATGGATACTGTTA-CAGGAA
131 ATCCTAATGAAGGGAATGTGTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTGTTATGA-GAA
* ** *
22814 TTGATGCTTGTCTTATTTAAGGGCTGAACTTTGATTTTAAGGAAAGTAGGGCAAAGAAAAGATTT
195 TCGATGCTTGTCTTATTTAAGGGAAGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTT
* * * * * *
22879 TCATGTAAAAGAAAATCATGAATATCATTTTTCCTAATGAGGAGAAAGTATTTATAGTACCTAAT
260 TCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAAT
** * * * * * *
22944 CACAAAATGTTTGAAGATCTTTACTAGAATTCATGTTTGTCTTATTTGTGGTACGAACATAGAAT
325 CACAAAATGAATGAAGATCTTTACTAGAA-TCTTGTTTGTCTCATTTGAGGCACGAACTTAGACT
* * *
23009 TTAAAAAAATTGGTGGGAAAAAAGCCTTTCTTGC-TAACCGAAAGCATCAATATCGTGTACCCTA
389 TTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGCGAAACC-AAAGCATCAATAT-GTGTATCCTA
* * *
23073 ATAAGAAGGCTAAGTTTATGGTG
452 ATGAGAAGACTATGTTTATGGTG
* * *
23096 CCTAGTCATGAAAAGAATAGGGATCAGTATGACTATTCAAGTTTGTCTTATTTAAGAGTCAAACT
1 CCTAATCCTGAAAAGAATAGGGATCAGTATGACTATTCAAGTTTGTCTTATTTAAGAGACAAACT
* ** *
23161 TTGATTCTATCAAAAACAGTGGAAAGAAAAATTTTTCTTGCGA-CACCAAAGCTTCAATGTCTTG
66 TTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGATC-CCAAAGCATCAATGTCTTG
* * * * *
23225 TATCCTAATGAAGGGATTGCGTTTTGGCTTCCCAAACTTGAAAAGAATGGAGATTATTATGAGAA
130 TATCCTAATGAAGGGAATGTGTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTGTTATGAGAA
* * * * *
23290 TCGATGCTT-T-TTTTTTACA-GGATA-AACTTTAATTTTAAGGAAGATATGGCAAAAAAAAGAT
195 TCGATGCTTGTCTTATTTA-AGGGA-AGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGAT
* * * **
23351 TTTCACGCAAAAGAAAATCATCAATACCATTTATAC-AAAAAGGGAGAATGTGTTTATAGTGCCT
258 TTTCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGA-GGAGAATGTGTTTATAGTGCCT
* * * *
23415 AATTACAAAATGAATGATGACCTTTACTATAATCTATGTTTGTCTCATTTGAGGCACGAACTTAG
322 AATCACAAAATGAATGAAGATCTTTACTAGAATCT-TGTTTGTCTCATTTGAGGCACGAACTTAG
* *
23480 ACTTTACAAAAATTAGTGGGAAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATGATGAATGC
386 ACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATG-TGTAT-C
23545 C-AATGAGAAGACTATGTTTATGGT
449 CTAATGAGAAGACTATGTTTATGGT
23569 ATTCATGTTT
Statistics
Matches: 6388, Mismatches: 1078, Indels: 299
0.82 0.14 0.04
Matches are distributed among these distances:
472 176 0.03
473 512 0.08
474 1088 0.17
475 881 0.14
476 1272 0.20
477 577 0.09
478 905 0.14
479 866 0.14
480 111 0.02
ACGTcount: A:0.37, C:0.14, G:0.18, T:0.31
Consensus pattern (474 bp):
CCTAATCCTGAAAAGAATAGGGATCAGTATGACTATTCAAGTTTGTCTTATTTAAGAGACAAACT
TTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGATCCCAAAGCATCAATGTCTTGT
ATCCTAATGAAGGGAATGTGTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTGTTATGAGAAT
CGATGCTTGTCTTATTTAAGGGAAGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTT
CATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATC
ACAAAATGAATGAAGATCTTTACTAGAATCTTGTTTGTCTCATTTGAGGCACGAACTTAGACTTT
ACAAAAATTGGTGGGAAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATGTGTATCCTAATGA
GAAGACTATGTTTATGGTG
Found at i:22294 original size:159 final size:156
Alignment explanation
Indices: 15872--23280 Score: 1379
Period size: 159 Copynumber: 46.7 Consensus size: 156
15862 TAAACTTTGC
* * * * * * ** * * *
15872 AAAAATTGGTGGGAAAAAAGCCTTTCTTGCGAAATCAAAGCACCAATATGATATGTGCTAATG-A
1 AAAAAATGGTGGAAAAAAAGCTTTTCTTGCGAAACCAAAACATCAATATCTTGTATCCTAATGAA
* * ** *
15936 GAAGAATATGTTTATGGTGCCTAATCCTTCAAAGAA-CGAGGATTAGCATGAGTATTCATGTTTG
66 G-GGAATGTGTTTATGGTGCCTAATCCTGAAAAGAATGGA-GATTAGCATGAGTATTCATGTTTG
* *
16000 TCTTTTTTAAGAAACAAACTTTGATTCTAT
129 TCTTATTTAAG-GACAAACTTTGATT-TAT
* * * * * ** ** * *
16030 CAAAAACGATGGAAAGAAAAGCATTTCTTGCTATCCCAAGGCATCAATATCATGTATCCTAACGA
1 AAAAAATGGTGGAAA-AAAAGCTTTTCTTGCGAAACCAAAACATCAATATCTTGTATCCTAATGA
* * * * * * * * * * **
16095 AGGGAATGTGATT-TGGCTTCCCAATCTTGAAAAGAATGGAAATAACTGTTATGGGAATCCATCA
65 AGGGAATGTGTTTATGG-TGCCTAATCCTGAAAAGAATGGAGATTA--G-CATGAGTATTCATGT
* * *
16159 TTGTCTTGTTTAAAGGATAAACTTTTATTT-T
126 TTGTCTTATTT-AAGGACAAACTTTGATTTAT
* * * * * * ** *
16190 AAGGAAAATAGCGTATAGAAAAGATTTTCATGC-AAAAGAAAATCATCAATATCATT-TACCCTA
1 AA--AAAATGGTGGA-AAAAAAGCTTTTCTTGCGAAACCAAAA-CATCAATATC-TTGTATCCTA
* * ** * ** * * **
16253 ATG-AGGAGAATGTGTTTATAGTGCCTAATCAC--AAAATAAATAAAGATCATTATTAGAAACCA
61 ATGAAGG-GAATGTGTTTATGGTGCCTAATC-CTGAAAA-GAATGGAGATTAGCATGAGTATTCA
** * * *
16315 TGTTTGTCTCGTTTAAGGCACGAACTTAGACTTTAC
123 TGTTTGTCTTATTTAAGG-ACAAACTTTGA-TTTAT
* * * * * * **
16351 AAAAATTTGTAGGCAAAAAA-CCTTTCTTGCAAAACCAAAGCATCAATATGATGTATCCTAAT-A
1 AAAAAATGGT-GGAAAAAAAGCTTTTCTTGCGAAACCAAAACATCAATATCTTGTATCCTAATGA
* * * * * * * *
16414 AGAAGACTATGTTTATGCTGCCTAATCCTGAAAAGAATAGAAATTAGTATAAGTATTCATGTTTG
65 AG-GGAATGTGTTTATGGTGCCTAATCCTGAAAAGAATGGAGATTAGCATGAGTATTCATGTTTG
* *
16479 T-TGTATTTAAGAGTCAAACTTTGATTCTCT
129 TCT-TATTTAAG-GACAAACTTTGATT-TAT
* * * * * ** * *
16509 CAAAAATAGAGGAAAGAAAAGCTTTTCTTG-TAATCCCAATGCATCAATGTCATGTATCCTAATG
1 AAAAAATGGTGGAAA-AAAAGCTTTTCTTGCGAA-ACCAAAACATCAATATCTTGTATCCTAATG
* * * * * * * *
16573 AAAGGAGTGTGTTT-TGGCT-TCTCAATCTTGAAAAGAATGGCGACT-GTTATGAG-AATCGATG
64 AAGGGAATGTGTTTATGG-TGCCT-AATCCTGAAAAGAATGGAGATTAG-CATGAGTATTC-ATG
*
16634 TTTGTCTTACTTAAGGGA-AGAACTTTGATTT-T
125 TTTGTCTTATTTAA-GGACA-AACTTTGATTTAT
* * * * * ** * *
16666 AAGGGAAGTAGG-GCAAAGAAAAGGTTTTCATGC-AAAAAAAAATCTTCAATATCATT-TGTCCT
1 AA--AAAAT-GGTGGAAA-AAAAGCTTTTCTTGCGAAACCAAAA-CATCAATATC-TTGTATCCT
* * * ** ** * ** * *
16728 AATGATGAGAATGTGTTTATAGTGCCTAAGAAC--AAAATGAATAAAGATCATTACT-AGAATCC
60 AATGAAGGGAATGTGTTTATGGTGCCTAA-TCCTGAAAA-GAATGGAGATTAGCA-TGAGTATTC
* * * * * *
16790 TTGTTTTTCTCATTTGAGGCACGAACTTAGACTTTA-
122 ATGTTTGTCTTATTTAAGG-ACAAACTTTGA-TTTAT
* * ** *
16826 AAAAAATTGGTAGG-AAAAAAGTTTTTCTTGCGAAACCAAAGCATCAATATGATGTATCATAATG
1 AAAAAA-TGGT-GGAAAAAAAGCTTTTCTTGCGAAACCAAAACATCAATATCTTGTATCCTAATG
** ** * ** * ** * *
16890 -AGAAAACTACGTTTATCGTGCCTAATCCCAAAAATAA-CAAGGATTAGTATGAGAATTCATGTT
64 AAGGGAA-TGTGTTTATGGTGCCTAATCCTGAAAAGAATGGA-GATTAGCATGAGTATTCATGTT
* * * *
16953 TGTCGTATTTAAGAGATAAATTTTCATTCTAT
127 TGTCTTATTTAAG-GACAAACTTTGATT-TAT
* * * * * * * *
16985 GAAAAATGGTGTAAAGAAAATCTTTTCTTGCGATACCGAAACATCAATGTCTTATATCCAAATGA
1 AAAAAATGGTGGAAA-AAAAGCTTTTCTTGCGAAACCAAAACATCAATATCTTGTATCCTAATGA
* * * * ** * * ** * ** * * * *
17050 AGGAAATGTATTTTTGGCTTCCTAGGCATGCAAAGAAAAGAGACTATTACGAG-AATCAATGCTC
65 AGGGAATGTGTTTATGG-TGCCTAATCCTGAAAAGAATGGAGATTAGCATGAGTATTC-ATGTTT
* * *
17114 ATCATATTTATGG-CATGAACTTTGATTTA-
128 GTCTTATTTAAGGACA--AACTTTGATTTAT
* * * ** * * *
17143 AAGGATAATTGG-GTAAAAAAAAG-TTTTCCATGC-AAAAGAAAATCATTAGTATCATT-TATCT
1 AA--A-AAATGGTG-GAAAAAAAGCTTTT-CTTGCGAAACCAAAA-CATCAATATC-TTGTATCC
* * * * * ** *
17204 TGATG-AGGAGAATGTGTTTATAGTGTCTAAT-C-GCAAAATGAATGAAGATCATTACTG-GAAT
59 TAATGAAGG-GAATGTGTTTATGGTGCCTAATCCTG-AAAA-GAATGGAGATTAGCA-TGAGTAT
* * * *
17265 CCA-GTTTGTCTCATTTGAGGCACGAA--TTGAAACTTT-T
120 TCATGTTTGTCTTATTTAAGG-ACAAACTTTG--A-TTTAT
* * * * * * * *
17302 AAAAAATTGGTGGGAAAAAAGCCTTTCGTGCAAAACCAAAGCATCAATATCGTGTAACCTAAAG-
1 AAAAAA-TGGTGGAAAAAAAGCTTTTCTTGCGAAACCAAAACATCAATATCTTGTATCCTAATGA
* * * * * * * * * *
17366 AGAAGACTATGTTTATGGTACC-AATCCTGAAAAGTATGGGGATCAGTATGACTATTCAAGTTTG
65 AG-GGAATGTGTTTATGGTGCCTAATCCTGAAAAGAATGGAGATTAGCATGAGTATTCATGTTTG
17430 TCTTATTTAAGAGACAAACTTTGATTCTAT
129 TCTTATTTAAG-GACAAACTTTGATT-TAT
* * * ** * * *
17460 CAAAAACGGTGG-AAAAAAGCTTTTCTTGTGATCCCAAAGCATCAATGTCTTGTATACTAATGAA
1 AAAAAATGGTGGAAAAAAAGCTTTTCTTGCGAAACCAAAACATCAATATCTTGTATCCTAATGAA
* * * * * *
17524 GGGAATGTGTTT-TGGCTTTCC-AATCTTAAAAAGAATGGAGACTCTTA-CA--AGAATTGATGC
66 GGGAATGTGTTTATGG--TGCCTAATCCTGAAAAGAATGGAGA---TTAGCATGAGTATTCATGT
**
17584 TTGTCTTATTTAAAGGATGAACTTTGATTT-T
126 TTGTCTTATTT-AAGGACAAACTTTGATTTAT
* * * * * **
17615 AAGGAAAATAAGGT-GAAGAAAAGATTTACATAC-AAAAGAAAATCATCAATATCATT-TATCCT
1 AA--AAAAT--GGTGGAAAAAAAGCTTTTCTTGCGAAACCAAAA-CATCAATATC-TTGTATCCT
* * * * *
17677 AATG-AGGAAAATGTGTTTATAGTGCCTAATCAC--AAAATAAATGAAGATCTTTAG--T-AGAA
60 AATGAAGG-GAATGTGTTTATGGTGCCTAATC-CTGAAAA-GAATGGAGA---TTAGCATGAGTA
** * * *
17736 TTCATGTTTGTCTTATTTGTGGTACGAACATAGACTTT-T
119 TTCATGTTTGTCTTATTTAAGG-ACAAACTTTGA-TTTAT
* * * * **
17775 CAAAAATTGGTGGAAAAAAAGGCTTTTCTTGCTAAACCAAAGCATTAATATGATGTATCCTAATG
1 -AAAAAATGGTGGAAAAAAA-GCTTTTCTTGCGAAACCAAAACATCAATATCTTGTATCCTAAT-
* * * *
17840 CGAA-GG-TTATGTTTATGGTGCCTAATCCTGAAAAGAACAGG-GATTAGTATGAGTATTCATGT
63 -GAAGGGAATGTGTTTATGGTGCCTAATCCTGAAAAGAA-TGGAGATTAGCATGAGTATTCATGT
*
17902 TTGTCGTATTTAAGAGACAAACTTTGATTCTAT
126 TTGTCTTATTTAAG-GACAAACTTTGATT-TAT
* * * * * * ** * *
17935 CAAAAATAGTGGAAAGAAAAGCTTTTCTTGTGACATCAACACATCAATGGCATGTATCCTAGTGA
1 AAAAAATGGTGGAAA-AAAAGCTTTTCTTGCGAAACCAAAACATCAATATCTTGTATCCTAATGA
* * * * * * * * * * * * * *
18000 AGAGAATGAGTTTTTGGGTTCCCAGTCTTGAAAAGAAAGGACACT-GTTACGAG-AATCGATGCT
65 AGGGAATGTGTTTAT-GGTGCCTAATCCTGAAAAGAATGGAGATTAG-CATGAGTATTC-ATGTT
* * **
18063 CGTCTTGTTTAAGGTATGAACTTTGATTTA-
127 TGTCTTATTTAAGG-ACAAACTTTGATTTAT
* * * * **
18093 AAGGAAAATAGG-GTAAAGAGAAA-ATTTCCATGC-AAAAGAAAATCAAT-AATATCATT-TATC
1 AA--AAAAT-GGTGGAAA-A-AAAGCTTTTCTTGCGAAACCAAAA-C-ATCAATATC-TTGTATC
* ** * * * * * ** * *
18153 CTAATCAAGAAAAAATGTGTTTATAGTGCCTAATCC-CAAAATGAATGAAGGTCATTACGAGAAT
58 CTAATGAAG--GGAATGTGTTTATGGTGCCTAATCCTGAAAA-GAATGGAGATTAGCATGAGTAT
* * * *
18217 ACATGTTTGT-TTCATTTGAGGA-ATGAACTTAGACTTTAC
120 TCATGTTTGTCTT-ATTTAAGGACA--AACTTTGA-TTTAT
* ** * * *
18256 AAAAATTGGT--AAGAAAAATGCCCTTCTTGCGAACCCAAAGCATCAATAT-TGTGTATCCTAAA
1 AAAAAATGGTGGAA-AAAAA-GCTTTTCTTGCGAAACCAAAACATCAATATCT-TGTATCCTAAT
* * * * * * * ** * *
18318 G-AGAAGACTATGCTTACGGTGCCTAATCCTGAAAAGAATGGGGATCATTATGACTATTCAAGTT
63 GAAG-GGAATGTGTTTATGGTGCCTAATCCTGAAAAGAATGGAGATTAGCATGAGTATTCATGTT
*
18382 TGTCTTATTTAAGAGACAAACTTTGACTCTAT
127 TGTCTTATTTAAG-GACAAACTTTGA-TTTAT
* * * * ** * * * * *
18414 CAAAAACGGTGGAAAGAAGAGCTTTTCTTGTGATCCCAAAGCATTAATGTCATGCATCCTAATGA
1 AAAAAATGGTGGAAA-AAAAGCTTTTCTTGCGAAACCAAAACATCAATATCTTGTATCCTAATGA
* * * * * * * * * *
18479 AAGGAATGTGTTT-TGGCTTCCCAATCTTGAAAAGAATGGCGACT-GTTATGAG-AATCGACGCT
65 AGGGAATGTGTTTATGG-TGCCTAATCCTGAAAAGAATGGAGATTAG-CATGAGTATTC-ATGTT
**
18541 TGTCTTATTTAAGAGATGAACTTTGATTT-T
127 TGTCTTATTTAAG-GACAAACTTTGATTTAT
* * * * * ** * *
18571 AAGGAAAGTAGG-GCAAAGAAAAGATTTTCATG-TAAAAGAAAATCATGAATATCATT-TTTCCT
1 AA--AAAAT-GGTGGAAA-AAAAGCTTTTCTTGCGAAACCAAAA-CATCAATATC-TTGTATCCT
* * * * ** * *
18633 AATG-AGGAGAAAGTATTTATAGTACCTAATCAC--AAAATGTTTGAAGATCTTTA-C-T-AGAA
60 AATGAAGG-GAATGTGTTTATGGTGCCTAATC-CTGAAAA-GAATGGAGA---TTAGCATGAGTA
** * * *
18692 TTCATGTTTGTCTTATTTGTGGTACGAACATAGAATTTA-
119 TTCATGTTTGTCTTATTTAAGG-ACAAACTTTG-ATTTAT
* * * * *
18731 AAAAAATTGGTGGGAAAAAAGCCTTTCTTGCG-AACCGAAAGCATCAATATCGTGTACCCTAATA
1 AAAAAA-TGGTGGAAAAAAAGCTTTTCTTGCGAAACC-AAAACATCAATATCTTGTATCCTAAT-
* * * * * * *
18795 AGAAGGCAA---GTTTATGGTGCCTAGTCATGAAAAGAATAGG-GATCAGTATGACTATTCAAGT
63 -GAAGGGAATGTGTTTATGGTGCCTAATCCTGAAAAGAAT-GGAGATTAGCATGAGTATTCATGT
18856 TTGTCTTATTTAAGAGACAAACTTTGATTCTAT
126 TTGTCTTATTTAAG-GACAAACTTTGATT-TAT
* * ** * * * *
18889 CAAAAATAGTGGAAAGAAAAATTTTTCTTGCGACACCAAAGCTTCAATGTCTTGTATCCTAATGA
1 AAAAAATGGTGGAAA-AAAAGCTTTTCTTGCGAAACCAAAACATCAATATCTTGTATCCTAATGA
* * * * * * ** *
18954 AGGGATTGCGTTT-TGGCTTCCCAAACTTGAAAAGAATGGAGATTATTATGAG-AATCGATGCTT
65 AGGGAATGTGTTTATGG-TGCCTAATCCTGAAAAGAATGGAGATTAGCATGAGTATTC-ATG-TT
* * *
19017 T-T-TT-TTTACAAGATAAACTTTAATTT-T
127 TGTCTTATTTA-AGGACAAACTTTGATTTAT
* * ** ** * *
19044 AAGGAAAAT-ATGGCAAAAAAAAGATTTTCACGC-AAAAGAAAATCATCAATACCATT-TATAC-
1 AA--AAAATGGTGG--AAAAAAAGCTTTTCTTGCGAAACCAAAA-CATCAATATC-TTGTATCCT
* * * * * * * * *
19105 AA-AAAGGGAGAATGTGTTTATAGTGCCTAAT--T-ACAA-AATGAATGATGACCTTTACTATAA
60 AATGAA-GG-GAATGTGTTTATGGTGCCTAATCCTGAAAAGAATGGA-GATTAGCATGAGTAT--
* * * * *
19165 TCTATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTAC
120 TC-ATGTTTGTCTTATTTAAGG-ACAAACTTTGA-TTTAT
* * * * ** *
19205 AAAAATTAGTGGGAAAAAAGCCTTTCTTGCGAAACCAAAGA-ATCAATATGATGAATGCC-AATG
1 AAAAAATGGTGGAAAAAAAGCTTTTCTTGCGAAACCAAA-ACATCAATATCTTGTAT-CCTAATG
* * * * *
19268 -AGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAACGGGGATTAGCATGAGTATTCATGTTT
64 AAG-GGAATGTGTTTATGGTGCCTAATCCTGAAAAGAATGGAGATTAGCATGAGTATTCATGTTT
19332 GTCTTATTTAAGAGACAAACTTTGATTCTAT
128 GTCTTATTTAAG-GACAAACTTTGATT-TAT
* * * * *
19363 AAAAAACGGTGGAAATAAAAGGTTTTCTGGCGACACCAAAACATCAATGTCTTGTATCCTAATGA
1 AAAAAATGGTGGAAA-AAAAGCTTTTCTTGCGAAACCAAAACATCAATATCTTGTATCCTAATGA
* * * * * ** * * * *
19428 AGGGAATGTGTTTTTGGCTTCCCAAT-CTGGAAAAGAAAGGAAATT-GCTACAAGAACTGATGCT
65 AGGGAATGTGTTTATGG-TGCCTAATCCT-GAAAAGAATGGAGATTAGC-ATGAGTATTCATGTT
*
19491 TGTCATATTTAAGGTACAAACTTTGATTTA-
127 TGTCTTATTTAAGG-ACAAACTTTGATTTAT
** * * * ** *
19521 AAAGGAAACTAGGGTAAAAAAAAAGATTTCCATGC-AAAAGAAAACAATTAATATCATT-TATCC
1 AAA--AAA-T--GGTGGAAAAAAAGCTTTTCTTGCGAAACCAAAAC-ATCAATATC-TTGTATCC
* * * * * ** *
19584 TGATG-AGGAGAATGTGTTTATAGTGCCAAATCAC--AAAATGAATGAAGATCATTACT-AG-AA
59 TAATGAAGG-GAATGTGTTTATGGTGCCTAATC-CTGAAAA-GAATGGAGATTAGCA-TGAGTAT
* * * * *
19644 TCTATGTTTGTCTCACTTGAGG-CATGAACTTAGACTTTAC
120 TC-ATGTTTGTCTTATTTAAGGACA--AACTTTGA-TTTAT
* * * * * * *
19684 GAAAATTGGT-GAGAAAATGCCTTTCTTGCGAACCCAAAGCATCAATAT-TGTGTATCCTAATG-
1 AAAAAATGGTGGAAAAAAAGCTTTTCTTGCGAAACCAAAACATCAATATCT-TGTATCCTAATGA
* * * * * * ** * *
19746 AGAAGACTGTGCTTACGGTGCCTAATCTTGAAAAGAATAGG-GATCATTATGACTATTCAAGTTT
65 AG-GGAATGTGTTTATGGTGCCTAATCCTGAAAAGAAT-GGAGATTAGCATGAGTATTCATGTTT
* *
19810 GTCTTATTTGAGAGACAAAGTTTGATTCTAT
128 GTCTTATTTAAG-GACAAACTTTGATT-TAT
* * ** ** * * *
19841 CAAAAACGGTGGAAAGAAAAGC-TTTCTTGCGATCCCAACGCATCAATGTCATGCATCCTAATGA
1 AAAAAATGGTGGAAA-AAAAGCTTTTCTTGCGAAACCAAAACATCAATATCTTGTATCCTAATGA
** * * * * * * * *
19905 AAAGAATGTGTTT-TGGCTTCCCAATCTTAAAAAGAATGGATACTGTTA-CA-G-GAATTGATGC
65 AGGGAATGTGTTTATGG-TGCCTAATCCTGAAAAGAATGGAGA---TTAGCATGAGTATTCATGT
* *
19966 TTGTCTTATTTAAGGGCTGAACTTTGATTT-T
126 TTGTCTTATTTAAGGAC-AAACTTTGATTTAT
* * * * * ** * *
19997 AAGGAAAGTAGG-GCAAAGAAAAGATTTTCATG-TAAAAGAAAATCATGAATATCATT-TTTCCT
1 AA--AAAAT-GGTGGAAA-AAAAGCTTTTCTTGCGAAACCAAAA-CATCAATATC-TTGTATCCT
* * * * ** * *
20059 AATG-AGGAGAAAGTATTTATAGTACCTAATCAC--AAAATGTTTGAAGATCTTTA-C-T-AGAA
60 AATGAAGG-GAATGTGTTTATGGTGCCTAATC-CTGAAAA-GAATGGAGA---TTAGCATGAGTA
** * * *
20118 TTCATGTTTGTCTTATTTGTGGTACGAACATAGAATTTA-
119 TTCATGTTTGTCTTATTTAAGG-ACAAACTTTG-ATTTAT
* * * * *
20157 AAAAAATTGGTGGGAAAAAAGCCTTTCTTGCG-AACCGAAAGCATCAATATCGTGTACCCTAAT-
1 AAAAAA-TGGTGGAAAAAAAGCTTTTCTTGCGAAACC-AAAACATCAATATCTTGTATCCTAATG
* * * * * * *
20220 AA--GAAGGCTAAGTTTATGGTGCCTAGTCATGAAAAGAATAGG-GATCAGTATGACTATTCAAG
64 AAGGGAATG-T--GTTTATGGTGCCTAATCCTGAAAAGAAT-GGAGATTAGCATGAGTATTCATG
20282 TTTGTCTTATTTAAGAGACAAACTTTGATTCTAT
125 TTTGTCTTATTTAAG-GACAAACTTTGATT-TAT
* * ** * * * *
20316 CAAAAATAGTGGAAAGAAAAATTTTTCTTGCGACACCAAAGCTTCAATGTCTTGTATCCTAATGA
1 AAAAAATGGTGGAAA-AAAAGCTTTTCTTGCGAAACCAAAACATCAATATCTTGTATCCTAATGA
* * * * * * ** *
20381 AGGGATTGCGTTT-TGGCTTCCCAAACTTGAAAAGAATGGAGATTATTATGAG-AATCGATGCTT
65 AGGGAATGTGTTTATGG-TGCCTAATCCTGAAAAGAATGGAGATTAGCATGAGTATTC-ATG-TT
* *
20444 T-T-TT-TTTACAGGATAAACTTTAATTT-T
127 TGTCTTATTTA-AGGACAAACTTTGATTTAT
* * ** ** * *
20471 AAGGAAAAT-ATGGCAAAAAAAAGATTTTCACGC-AAAAGAAAATCATCAATACCATT-TATAC-
1 AA--AAAATGGTGG--AAAAAAAGCTTTTCTTGCGAAACCAAAA-CATCAATATC-TTGTATCCT
* * * * * * * * *
20532 AA-AAAGGGAGAATGTGTTTATAGTGCCTAAT--T-ACAA-AATGAATGATGACCTTTACTATAA
60 AATGAA-GG-GAATGTGTTTATGGTGCCTAATCCTGAAAAGAATGGA-GATTAGCATGAGTAT--
* * * * *
20592 TCTATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTAC
120 TC-ATGTTTGTCTTATTTAAGG-ACAAACTTTGA-TTTAT
* * * * ** *
20632 AAAAATTAGTGGGAAAAAAGCCTTTCTTGCGAAACCAAAGA-ATCAATATGATGAATGCC-AATG
1 AAAAAATGGTGGAAAAAAAGCTTTTCTTGCGAAACCAAA-ACATCAATATCTTGTAT-CCTAATG
* * * * *
20695 -AGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAACGGGGATTAGCATGAGTATTCATGTTT
64 AAG-GGAATGTGTTTATGGTGCCTAATCCTGAAAAGAATGGAGATTAGCATGAGTATTCATGTTT
20759 GTCTTATTTAAGAGACAAACTTTGATTCTAT
128 GTCTTATTTAAG-GACAAACTTTGATT-TAT
* * * * *
20790 AAAAAACGGTGGAAATAAAAGGTTTTCTGGCGACACCAAAACATCAATGTCTTGTATCCTAATGA
1 AAAAAATGGTGGAAA-AAAAGCTTTTCTTGCGAAACCAAAACATCAATATCTTGTATCCTAATGA
* * * * * * ** * * * *
20855 AGGGAATGTGTTTTTGGCTTCCCAAT-CTGGAAAAGAAAGGAAACT-GCTACAAGAACTGATGCT
65 AGGGAATGTGTTTATGG-TGCCTAATCCT-GAAAAGAATGGAGATTAGC-ATGAGTATTCATGTT
*
20918 TGTCATATTTAAGGTACAAACTTTGATTTA-
127 TGTCTTATTTAAGG-ACAAACTTTGATTTAT
** * * * ** *
20948 AAAGGAAACTAGGGTAAAAAAAAAGATTTCCATGC-AAAAGAAAACAATTAATATCATT-TATCC
1 AAA--AAA-T--GGTGGAAAAAAAGCTTTTCTTGCGAAACCAAAAC-ATCAATATC-TTGTATCC
* * * * * ** *
21011 TGATG-AGGAGAATGTGTTTATAGTGCCAAATCAC--AAAATGAATGAAGATCATTACT-AG-AA
59 TAATGAAGG-GAATGTGTTTATGGTGCCTAATC-CTGAAAA-GAATGGAGATTAGCA-TGAGTAT
* * * * *
21071 TCTATGTTTGTCTCACTTGAGG-CATGAACTTAGACTTTAC
120 TC-ATGTTTGTCTTATTTAAGGACA--AACTTTGA-TTTAT
* * * * * * *
21111 GAAAATTGGT-GAGAAAATGCCTTTCTTGCGAACCCAAAGCATCAATAT-TGTGTATCCTAATG-
1 AAAAAATGGTGGAAAAAAAGCTTTTCTTGCGAAACCAAAACATCAATATCT-TGTATCCTAATGA
* * * * * * ** * *
21173 AGAAGACTGTGCTTACGGTGCCTAATCTTGAAAAGAATAGG-GATCATTATGACTATTCAAGTTT
65 AG-GGAATGTGTTTATGGTGCCTAATCCTGAAAAGAAT-GGAGATTAGCATGAGTATTCATGTTT
* *
21237 GTCTTATTTGAGAGACAAAGTTTGATTCTAT
128 GTCTTATTTAAG-GACAAACTTTGATT-TAT
* * ** ** * * *
21268 CAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGATCCCAACGCATCAATGTCATGCATCCTAATGA
1 AAAAAATGGTGGAAA-AAAAGCTTTTCTTGCGAAACCAAAACATCAATATCTTGTATCCTAATGA
** * * * * * * * * * *
21333 AAAGAATGTGTTT-TGGCTTCCCAATCTTAAAAAGAATGGATACT-GTTAT-AGGAATTGATGCT
65 AGGGAATGTGTTTATGG-TGCCTAATCCTGAAAAGAATGGAGATTAG-CATGA-GTATTCATGTT
* *
21395 TGTCTTATTTAAGGGCTGAACTTTGATTT-T
127 TGTCTTATTTAAGGAC-AAACTTTGATTTAT
* * * * * ** * *
21425 AAGGAAAGTAGG-GCAAAGAAAAGATTTTCATG-TAAAAGAAAATCATGAATATCATT-TTTCCT
1 AA--AAAAT-GGTGGAAA-AAAAGCTTTTCTTGCGAAACCAAAA-CATCAATATC-TTGTATCCT
* * * * ** * *
21487 AATG-AGGAGAAAGTATTTATAGTACCTAATCAC--AAAATGTTTGAAGATCTTTA-C-T-AGAA
60 AATGAAGG-GAATGTGTTTATGGTGCCTAATC-CTGAAAA-GAATGGAGA---TTAGCATGAGTA
** * * *
21546 TTCATGTTTGTCTTATTTGTGGTACGAACATAGAATTTA-
119 TTCATGTTTGTCTTATTTAAGG-ACAAACTTTG-ATTTAT
* * * * *
21585 AAAAAATTGGTGGGAAAAAAGCCTTTCTTGCG-AACCGAAAGCATCAATATCGTGTACCCTAAT-
1 AAAAAA-TGGTGGAAAAAAAGCTTTTCTTGCGAAACC-AAAACATCAATATCTTGTATCCTAATG
* * * * ** * *
21648 AA--GAAGGCTAAGTTTATGGTGCCTAGTCATGAAAAGAATAGG-GATCAATATGACTATTCAAG
64 AAGGGAATG-T--GTTTATGGTGCCTAATCCTGAAAAGAAT-GGAGATTAGCATGAGTATTCATG
21710 TTTGTCTTATTTAAGAGACAAACTTTGATTCTAT
125 TTTGTCTTATTTAAG-GACAAACTTTGATT-TAT
* * ** * * * *
21744 CAAAAATAGTGGAAAGAAAAATTTTTCTTGCGACACCAAAGCTTCAATGTCTTGTATCCTAATGA
1 AAAAAATGGTGGAAA-AAAAGCTTTTCTTGCGAAACCAAAACATCAATATCTTGTATCCTAATGA
* * * * * * ** *
21809 AGGGATTGCGTTT-TGGCTTCCCAAACTTGAAAAGAATGGAGATTATTATGAG-AATCGATGCTT
65 AGGGAATGTGTTTATGG-TGCCTAATCCTGAAAAGAATGGAGATTAGCATGAGTATTC-ATG-TT
* *
21872 T-T-TT-TTTACAGGATAAACTTTAATTT-T
127 TGTCTTATTTA-AGGACAAACTTTGATTTAT
* * ** ** * *
21899 AAGGAAAAT-ATGGCAAAAAAAAGATTTTCACGC-AAAAGAAAATCATCAATACCATT-TATAC-
1 AA--AAAATGGTGG--AAAAAAAGCTTTTCTTGCGAAACCAAAA-CATCAATATC-TTGTATCCT
* * * * * * * * *
21960 AA-AAAGGGAGAATGTGTTTATAGTGCCTAAT--T-ACAA-AATGAATGATGACCTTTACTATAA
60 AATGAA-GG-GAATGTGTTTATGGTGCCTAATCCTGAAAAGAATGGA-GATTAGCATGAGTAT--
* * * * * *
22020 TCTATGTTTGTCTCATTTGAGGCACGAACTTAGAATTAC
120 TC-ATGTTTGTCTTATTTAAGG-ACAAACTTTGATTTAT
* * * * * ** *
22059 AAAAATTAGTGGGAAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATGATGAATGCC-AATG-
1 AAAAAATGGTGGAAAAAAAGCTTTTCTTGCGAAACCAAAACATCAATATCTTGTAT-CCTAATGA
* * * * *
22122 AGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAACGGGGATTAGCATGAGTATTCATGTTTG
65 AG-GGAATGTGTTTATGGTGCCTAATCCTGAAAAGAATGGAGATTAGCATGAGTATTCATGTTTG
22187 TCTTATTTAAGAGACAAACTTTGATTCTAT
129 TCTTATTTAAG-GACAAACTTTGATT-TAT
* * * *
22217 AAAAAATGGTGGAAATAAAAGGTTTTCTGGCGACACCAAAACATCAATGTCTTGTATCCTAATGA
1 AAAAAATGGTGGAAA-AAAAGCTTTTCTTGCGAAACCAAAACATCAATATCTTGTATCCTAATGA
* * * * * * ** * * * *
22282 AGGGAATGTGTTTTTGGCTTCCCAAT-CTGGAAAAGAAAGGAAACT-GCTACAAGAACTGATGCT
65 AGGGAATGTGTTTATGG-TGCCTAATCCT-GAAAAGAATGGAGATTAGC-ATGAGTATTCATGTT
* *
22345 TGTCATATTTAAGGTGCAAACTTTGATTTA-
127 TGTCTTATTTAAGG-ACAAACTTTGATTTAT
** * * * ** *
22375 AAAGGAAACTAGGGTAAAAAAAAAGATTTCCATGC-AAAAGAAAACCATTAATATCATT-TATCC
1 AAA--AAA-T--GGTGGAAAAAAAGCTTTTCTTGCGAAACCAAAA-CATCAATATC-TTGTATCC
* * * * * ** *
22438 TGATG-AGGAGAATGTGTTTATAGTGCCAAATCAC--AAAATGAATGAAGATCATTACT-AG-AA
59 TAATGAAGG-GAATGTGTTTATGGTGCCTAATC-CTGAAAA-GAATGGAGATTAGCA-TGAGTAT
* * * * *
22498 TCTATGTTTGTCTCACTTGAGG-CATGAACTTAGACTTTAC
120 TC-ATGTTTGTCTTATTTAAGGACA--AACTTTGA-TTTAT
* * * * * *
22538 GAAAATTGGT-GAGAAAATGCCTTTCTTGCGAACCCAAAGA-ATCAATAT-TGTGTATCCTAATG
1 AAAAAATGGTGGAAAAAAAGCTTTTCTTGCGAAACCAAA-ACATCAATATCT-TGTATCCTAATG
* * * * * * ** * *
22600 -AGAAGACTGTGCTTACGGTGCCTAATCTTGAAAAGAATAGG-GATCATTATGACTATTCAAGTT
64 AAG-GGAATGTGTTTATGGTGCCTAATCCTGAAAAGAAT-GGAGATTAGCATGAGTATTCATGTT
* *
22663 TGTCTTATTTGAGAGACAAAGTTTGATTCTAT
127 TGTCTTATTTAAG-GACAAACTTTGATT-TAT
* * ** ** * * *
22695 CAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGATCCCAACGCATCAATGTCATGCATCCTAATGA
1 AAAAAATGGTGGAAA-AAAAGCTTTTCTTGCGAAACCAAAACATCAATATCTTGTATCCTAATGA
** * * * * * * * *
22760 AAAGAATGTGTTT-TGGCTTCCCAATCTTAAAAAGAATGGATACTGTTA-CA-G-GAATTGATGC
65 AGGGAATGTGTTTATGG-TGCCTAATCCTGAAAAGAATGGAGA---TTAGCATGAGTATTCATGT
* *
22821 TTGTCTTATTTAAGGGCTGAACTTTGATTT-T
126 TTGTCTTATTTAAGGAC-AAACTTTGATTTAT
* * * * * ** * *
22852 AAGGAAAGTAGG-GCAAAGAAAAGATTTTCATG-TAAAAGAAAATCATGAATATCATT-TTTCCT
1 AA--AAAAT-GGTGGAAA-AAAAGCTTTTCTTGCGAAACCAAAA-CATCAATATC-TTGTATCCT
* * * * ** * *
22914 AATG-AGGAGAAAGTATTTATAGTACCTAATCAC--AAAATGTTTGAAGATCTTTA-C-T-AGAA
60 AATGAAGG-GAATGTGTTTATGGTGCCTAATC-CTGAAAA-GAATGGAGA---TTAGCATGAGTA
** * * *
22973 TTCATGTTTGTCTTATTTGTGGTACGAACATAGAATTTA-
119 TTCATGTTTGTCTTATTTAAGG-ACAAACTTTG-ATTTAT
* * * * * *
23012 AAAAAATTGGTGGGAAAAAAGCCTTTCTTGC-TAACCGAAAGCATCAATATCGTGTACCCTAAT-
1 AAAAAA-TGGTGGAAAAAAAGCTTTTCTTGCGAAACC-AAAACATCAATATCTTGTATCCTAATG
* * * * * * *
23075 AA--GAAGGCTAAGTTTATGGTGCCTAGTCATGAAAAGAATAGG-GATCAGTATGACTATTCAAG
64 AAGGGAATG-T--GTTTATGGTGCCTAATCCTGAAAAGAAT-GGAGATTAGCATGAGTATTCATG
*
23137 TTTGTCTTATTTAAGAGTCAAACTTTGATTCTAT
125 TTTGTCTTATTTAAG-GACAAACTTTGATT-TAT
* ** ** * * * *
23171 CAAAAACAGTGGAAAGAAAAATTTTTCTTGCGACACCAAAGCTTCAATGTCTTGTATCCTAATGA
1 AAAAAATGGTGGAAA-AAAAGCTTTTCTTGCGAAACCAAAACATCAATATCTTGTATCCTAATGA
* * * * * *
23236 AGGGATTGCGTTT-TGGCTTCCCAAACTTGAAAAGAATGGAGATTA
65 AGGGAATGTGTTTATGG-TGCCTAATCCTGAAAAGAATGGAGATTA
23281 TTATGAGAAT
Statistics
Matches: 5118, Mismatches: 1528, Indels: 1209
0.65 0.19 0.15
Matches are distributed among these distances:
153 15 0.00
154 29 0.01
155 46 0.01
156 154 0.03
157 774 0.15
158 1204 0.24
159 1770 0.35
160 563 0.11
161 266 0.05
162 255 0.05
163 42 0.01
ACGTcount: A:0.37, C:0.14, G:0.19, T:0.31
Consensus pattern (156 bp):
AAAAAATGGTGGAAAAAAAGCTTTTCTTGCGAAACCAAAACATCAATATCTTGTATCCTAATGAA
GGGAATGTGTTTATGGTGCCTAATCCTGAAAAGAATGGAGATTAGCATGAGTATTCATGTTTGTC
TTATTTAAGGACAAACTTTGATTTAT
Found at i:24457 original size:157 final size:155
Alignment explanation
Indices: 23775--24457 Score: 456
Period size: 157 Copynumber: 4.3 Consensus size: 155
23765 CATGCAAAAG
* * * * * *
23775 AAAACCATTAATATCATTTATCCTGATGAGGAGAATGTGTTTATAGTGCCAAATCACAAAATGAA
1 AAAAGCATTAATATCATGTATCCTAATGAGAAGAATGTGTTTATGGTGCCTAATCACAAAATGAA
* * * *
23840 TGAAGATCATTACTAGAATCTATGTTTGTCTCACTTGAGGCATGAACTTAGACTTTACGAAAATT
66 TGAAGATCATTA-TAGAATCCATGTTTGTCTCATTTAAGGCATGAACTTAGACTTTATGAAAATT
23905 GGTGAGAAAATGCCTTTCTTGCGAACC
130 GGTGAGAAAA-GCCTTTCTTGCGAACC
* * ** * * * **
23932 CAAAGCATCAATATTGTGTATCCTAATGAGAAGACTGTGCTTACGGTGCCTAATCTTGAAAA-GA
1 AAAAGCATTAATATCATGTATCCTAATGAGAAGAATGTGTTTATGGTGCCTAATC-ACAAAATGA
* * * * * * * *
23996 AT-AGGGATCATTAT-GACTATTCAAGTTTGTCTTATTTGAGAGACA--AAGTTTGA-TTCTATC
65 ATGA-AGATCATTATAGA--ATCCATGTTTGTCTCATTT-A-AGGCATGAACTTAGACTT-TATG
** * *
24056 AAAAACGGTGGAAAGAAAAGCTTTTCTTGCGATCC
124 AAAATTGGT-G--AGAAAAGCCTTTCTTGCGAACC
* * * * * * * * ** *
24091 CAACGCATCAATGTCATGCATCCTAATGAAAAGAATGTGTTT-TGGCTTCCCAATCTTAAAAAGA
1 AAAAGCATTAATATCATGTATCCTAATGAGAAGAATGTGTTTATGG-TGCCTAATCACAAAATGA
** * * * * *
24155 ATG--GATACTATTATAGGAATTGATGCTTGTCTTATTTAAGGGC-TGAACTTTGATTTTAAGGA
65 ATGAAGAT-C-ATTATA-GAATCCATGTTTGTCTCATTTAA-GGCATGAACTTAGACTTT-ATGA
* ** * * *
24217 AAATAAGGCAAAGAAAAG-ATTTCATG-GAA-A
125 AAAT-TGG-TGAGAAAAGCCTTTCTTGCGAACC
* ** * * *
24247 AGTAAATCATTAACGTCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATG
1 A--AAAGCATTAATATCATGTATCCTAATGAGAAGAATGTGTTTATGGTGCCTAATCACAAAATG
24312 AATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTAAGGCATGAACTTAGACTTTATGAAAA
64 AATGAAGATCATTA-TAGAATCCATGTTTGTCTCATTTAAGGCATGAACTTAGACTTTATGAAAA
*
24377 TTGGTGGGAAAATGCCTTTCTTGCGAACC
128 TTGGTGAGAAAA-GCCTTTCTTGCGAACC
* * * * *
24406 AAAAGCATTAATATCGTGTACCCTAATGAGAAGACTATGTTTATGGCGCCTA
1 AAAAGCATTAATATCATGTATCCTAATGAGAAGAATGTGTTTATGGTGCCTA
24458 GTCAAGAAAA
Statistics
Matches: 393, Mismatches: 98, Indels: 70
0.70 0.17 0.12
Matches are distributed among these distances:
155 7 0.02
156 7 0.02
157 145 0.37
158 109 0.28
159 105 0.27
160 16 0.04
161 4 0.01
ACGTcount: A:0.35, C:0.15, G:0.19, T:0.31
Consensus pattern (155 bp):
AAAAGCATTAATATCATGTATCCTAATGAGAAGAATGTGTTTATGGTGCCTAATCACAAAATGAA
TGAAGATCATTATAGAATCCATGTTTGTCTCATTTAAGGCATGAACTTAGACTTTATGAAAATTG
GTGAGAAAAGCCTTTCTTGCGAACC
Found at i:24687 original size:474 final size:473
Alignment explanation
Indices: 23579--31445 Score: 7355
Period size: 474 Copynumber: 16.7 Consensus size: 473
23569 ATTCATGTTT
* * * *
23579 AAAACGGTGGAAATAAAAGGTTTTCTGGCGACACCAAAACATCAATGTCTTGTATCCTAATGAAG
1 AAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCTTGTATCCTAATGAAG
* * * *
23644 GGAATGTGTTTTTGGCTTCCCAATCTGGAAAAGAAAGGAAACTGCTACAAGAA-CTGATGCTTGT
66 GGAATGTG-TTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTGTTACAAGAATC-GATGCTTGT
* * ** * * * * *
23708 CATATTTAAGGTACAAACTTTGATTTAAAAGGAAACTAGGGTAAAAAAAAAGATTTCCATGCAAA
129 CTTATTTAAGGGATGAACTTTGATTT-TAAGGAAAATAAGG-CAAAGAAAAGATTTCCATGCAAA
* * *
23773 AGAAAACCATTAATATCATTTATCCTGATGAGGAGAATGTGTTTATAGTGCCAAATCACAAAATG
192 AGAAAATCATTAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATG
* * * *
23838 AATGAAGATCATTACTAGAATCTATGTTTGTCTCACTTGAGGCATGAACTTAGACTTTACGAAAA
257 AATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAA
* *
23903 TTGGTGAGAAAATGCCTTTCTTGCGAACCCAAAGCATCAATATTGTGTATCCTAATGAGAAGACT
322 TTGGTGGGAAAAAGCCTTTCTTGCGAA-CCAAAGCATCAATA-TGTGTATCCTAATGAGAAGACT
* * * * * *
23968 GTGCTTACGGTGCCTAATCTTGAAAAGAATAGGGATCATTATGACTATTCAAGTTTGTCTTATTT
385 ATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATCAGTATGACTATTCAAGTTTGTCTTATTT
* *
24033 GAGAGACAAAGTTTGATTCTATCA
450 AAGAGACAAACTTTGATTCTATCA
* * *
24057 AAAACGGTGGAAAGAAAAGCTTTTCTTGCGATC-CCAACGCATCAATGTCATGCATCCTAATGAA
1 AAAACGGTGGAAAGAAAAGCTTTTCTTGCGA-CACCAAAGCATCAATGTCTTGTATCCTAATGAA
** * * * * * *
24121 AAGAATGTGTTTTGGCTTCCCAATCTTAAAAAGAATGGATACTATTATAGGAATTGATGCTTGTC
65 GGGAATGTGTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTGTTACAAGAATCGATGCTTGTC
* * *
24186 TTATTTAAGGGCTGAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTT-CATGGAAAAGT
130 TTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGA
**
24250 AAATCATTAACGTCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAAT
195 AAATCATTAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAAT
* * **
24315 GAAGATCATTACTAGAATCCATGTTTGTCTCATTTAAGGCATGAACTTAGACTTTATGAAAATTG
260 GAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTG
* * *
24380 GTGGGAAAATGCCTTTCTTGCGAACCAAAAGCATTAATATCGTGTACCCTAATGAGAAGACTATG
325 GTGGGAAAAAGCCTTTCTTGCGAACC-AAAGCATCAATAT-GTGTATCCTAATGAGAAGACTATG
* * ** *
24445 TTTATGGCGCCTAGTCAAGAAAAGAATGGGGATCAGTATGACTATTCAAGTTTATCTTATTTAAG
388 TTTATGGTGCCTAATCCTGAAAAGAATGGGGATCAGTATGACTATTCAAGTTTGTCTTATTTAAG
* *
24510 AGGCAAACTTTGATTTTATCA
453 AGACAAACTTTGATTCTATCA
** ** * * * *
24531 AAAATAGTGGAAAGAAAAATTTTTCTTACGACACCAAAGCTTTAATGTCTTGTATCCTAATGAGG
1 AAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCTTGTATCCTAATGAAG
* * * * * * * *
24596 GGATTGCGCTTTGGGTTCCCAATCTTGAAAAGAATGGAGACTATTACAAGACTCGATGCTTCTTT
66 GGAATGTGTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTGTTACAAGAATCGATGCTTGTCT
* * * * * * *
24661 TTTTTAATGGATAAACTTTTATTTTAAGGAAAATATGGTAAAGAAAAGATTAT-CACGCAAAAGA
131 TATTTAAGGGATGAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATT-TCCATGCAAAAGA
* * * * * *
24725 AAATCATCAATACCAATTATACTAAAG-GGAGAATGTGTTTATAGTGCCTAATTACAAAATGAAT
195 AAATCATTAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAAT
* * * * * *
24789 GATGACCTTTACTATAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGAGTTTACAAAAATTA
260 GAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTG
* * *
24854 GTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATGGTGAATGCC-AATGACAAAACTA
325 GTGGGAA-AAAGCCTTTCTTGCG-AACCAAAGCATCAATAT-GTGTAT-CCTAATGAGAAGACTA
* * * * * *
24918 TGTTTATGGTGCCTAATCCTTAAAAGGACGGGG---AGCATGAGTATTCATGTTTGTCTTATTTA
386 TGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATCAGTATGACTATTCAAGTTTGTCTTATTTA
* *
24980 AGAAACACACTTTGATTCTATCA
451 AGAGACAAACTTTGATTCTATCA
* ** *
25003 AAAACAGTGGAAAGAAAAGCTTTTCTTGCGATC-CCAAAGTGTCAATGTCATGTATCCTAATGAA
1 AAAACGGTGGAAAGAAAAGCTTTTCTTGCGA-CACCAAAGCATCAATGTCTTGTATCCTAATGAA
* * * **
25067 GGGAATGTGATTTGGCTTCCCAATCTTGAAAAGAATGGAAACTATTATGAGAATCCG-TGCTTGT
65 GGGAATGTGTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTGTTACAAGAAT-CGATGCTTGT
* * * * * ** *
25131 CTTATTTAAAGGATAAACTTTTATTTTAAGGAAAAT-AGCGTATAGAAAAGATTTTTA-ACAAAA
129 CTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAAG-GCAAAGAAAAGATTTCCATGCAAAA
* * * * *
25194 AAAAATCATCAATATCATTTATCCTAATGAGGAGAATATATTTATAGTGCCTAATCACAAAATAA
193 GAAAATCATTAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGA
* * * * * *
25259 ATGAGGATCATTATTAGAATCCATGTTTGTCTCATTTGAGGCACAAACTTTGACTTCACAAAATT
258 ATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAAT
*
25324 TGGTGGGCAAAAAGCCTTTCTTGCAAAACCAAAGCATCAATATGATGTATCCTAATGAGAAGACT
323 TGGTGGG-AAAAAGCCTTTCTTGC-GAACCAAAGCATCAATATG-TGTATCCTAATGAGAAGACT
* * * * * *
25389 GTGTTTATGTTGCCTAATCCTGAAAAGAATGGAGATTAGTATGAGTATTCATGTTTGT-TGTATT
385 ATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATCAGTATGACTATTCAAGTTTGTCT-TATT
*
25453 TAAGAGTCAAACTTTGATTCTATCA
449 TAAGAGACAAACTTTGATTCTATCA
* * *
25478 AAAACGGTGGAAAGAAAAGCTTTTCTTGCAATC-CCAATGCATCAATGTCATGTATCCTAATGAA
1 AAAACGGTGGAAAGAAAAGCTTTTCTTGCGA-CACCAAAGCATCAATGTCTTGTATCCTAATGAA
* * * * **
25542 GGGAGTGTGTTTTGGCTTCTCAATCTTGAAAAGAATGGCGACTGTCATGAGAATCGATGCTTGTC
65 GGGAATGTGTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTGTTACAAGAATCGATGCTTGTC
* * ** * * *
25607 TTACTTAAGGGATTAACTTTGATTTTAAGGAAAGCAGGGCAAAGATAAGATTTTCATGCAAAAGA
130 TTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGA
* * * * **
25672 AAATC-TTCAATATTATTTGTCCTAATGATGAGAATATGTTTATAGTGCCTAAGAACAAAATGAA
195 AAATCATT-AATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAA
* * * * *
25736 TGAAGATCATTACTATAATCCTTGTTTGTCTCATTTGAGGCAGGAACTTAGACTTTAAAAAAAAA
259 TGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTT-ACAAAAAT
* ** * * * *
25801 TGGTAGGAAAAAAAGTTTTTCTTGCGAAACCAAACCATCAATATATTATATGCC-AATGAGAAAA
323 TGGT-GG-GAAAAAGCCTTTCTTGCG-AACCAAAGCATCAATAT-GTGTAT-CCTAATGAGAAGA
* * * * *** * * ** * *
25865 CTACGTTTATCGTGCCTAATCCTAAAAATAACAAGGATTAGTGTGAGAATTCATGTTTGTCATAT
383 CTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATCAGTATGACTATTCAAGTTTGTCTTAT
*
25930 TTAAGAGACAAACTTTCATTCTATCA
448 TTAAGAGACAAACTTTGATTCTATCA
* * * * * * * *
25956 AAAACGTTGCAAAGAAAAGCTTTTCTTGCAATACCAAAACATCAATGTCTTGTATTCGAATAAAG
1 AAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCTTGTATCCTAATGAAG
* * * * ** **
26021 GGAATGTGTTTTTGGCTTCCTAGTCTTGCAAAGAAAAAGGAGACTGTTATGAGAATCGATGCTCA
66 GGAATGTG-TTTTGGCTTCCCAATCTTG-AAA-AGAATGGAGACTGTTACAAGAATCGATGCTTG
* * * * * * * *
26086 TCATATTTATGGCATGAACTTTGATTTAAAAGAAAATTAGGTAAAGAAAAGGTTTCCATGCAAAA
128 TCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAA
* * * **
26151 GAAAATCATTAGTATCATTTATCTTGATGAGGAGAATGTGTTTATAGTGTGTAATCACAAAATGA
193 GAAAATCATTAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGA
*
26216 ATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCAC-AAATTAAGACTTTTA-AAAA
258 ATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTT-AGAC-TTTACAAAA
* *
26279 ATTGGTGGGAAAAAAGCCTTTCGTGCGAAACCAAAGCATCAATATCGTGTAACCTACA-GAGAAG
321 ATTGGTGGG-AAAAAGCCTTTCTTGCG-AACCAAAGCATCAATAT-GTGTATCCTA-ATGAGAAG
* * * *
26343 ACTATGTTTATGGTACC-GATCCTGAAAAGTATGGGGTTCAGTATGACTATTCAAGTTTGTCTTA
382 ACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATCAGTATGACTATTCAAGTTTGTCTTA
26407 TTTAAGAGACAAACTTTGATTCTATCA
447 TTTAAGAGACAAACTTTGATTCTATCA
* * *
26434 AAAACGGTGGAAA-AAAAACTTTTCTTGTGATC-CCAAAGCATCAATGTCTTGTATACTAATGAA
1 AAAACGGTGGAAAGAAAAGCTTTTCTTGCGA-CACCAAAGCATCAATGTCTTGTATCCTAATGAA
* * * * *
26497 GGGAATGTGTTTTGGCTTACTAATTTTAAAAAGAATGGAGACTGTTACAAGAATTGATGCTTGTC
65 GGGAATGTGTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTGTTACAAGAATCGATGCTTGTC
* * *
26562 TTATTTAAGGGATGAACTTTAATTTTAAGGAAAATAAGGCAAAAAAAAGATTTCCATACAAAAGA
130 TTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGA
* * * * *
26627 AAATCATCAATATCATTTATCCTAATGAGGTGAATTTGCTTATAGCGCCTAATCACAAAATGAAT
195 AAATCATTAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAAT
* * * * * ** * *
26692 GAAGATCTTTACTAGAATTCGTGTTTGTCTTATTTGTGGTGCGAACATAGACTTTTCAAAAATTG
260 GAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTG
* * * *
26757 GTGGGAAAAAAGCCTTTCTTGCAAAACCAAAGCATCAATATGATGCATCCTAAAGA-AAAAGCTA
325 GTGGG-AAAAAGCCTTTCTTGC-GAACCAAAGCATCAATATG-TGTATCCTAATGAGAAGA-CTA
* * * * * * *
26821 TGTTTATGGTGCCTAATCCTGAAAAGAACGGGGATTAGTATGAGTATTCATGTTTGCCGTATTGA
386 TGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATCAGTATGACTATTCAAGTTTGTCTTATTTA
* **
26886 GGAGACAAACTTTGATTCTAAAA
451 AGAGACAAACTTTGATTCTATCA
** *
26909 AAAACGGTGGAAAGAAAAGCACTTCTTACGACACCAACA-CATCAATGTCTTGTATCCTAATGAA
1 AAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAA-AGCATCAATGTCTTGTATCCTAATGAA
* * * * * * * *
26973 GGGAATGCGTTTTTGGCTTCCTAGTCTTGAAAAAAAAGGAGACTGCTACGAGAATCGATGCTCGT
65 GGGAATGTG-TTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTGTTACAAGAATCGATGCTTGT
* * *
27038 CATATTTAAGGTATGAACTTTCA---T--GG----T-A---AAA-AAAAGATTTCCATGCAAAAG
129 CTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAG
* * * ** *
27089 AAAAGCATTAATATCATTTATCCTAATGAGGAGAATGTGTTTATAATGCCAAATCATGAAATAAA
194 AAAATCATTAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAA
* * * *
27154 TGAAGATCATTACTAGAATCTATGTTTGTCTCACTTGAGGCATGAACTTAGACTTTACGAAAATT
259 TGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATT
* * *
27219 GGTGAGAAAATGCCTTTCTTGCAAACCCAAAGCATCAATATTGTGTATCCTAATGAGAAGACTAT
324 GGTGGGAAAAAGCCTTTCTTGCGAA-CCAAAGCATCAATA-TGTGTATCCTAATGAGAAGACTAT
* * * * * *
27284 GCTTATAGTGCCTAATCTTGGAAAGAATGGGGATCATTATGACTATTCAAGCTTGTCTTATTTAA
387 GTTTATGGTGCCTAATCCTGAAAAGAATGGGGATCAGTATGACTATTCAAGTTTGTCTTATTTAA
27349 GAGACAAACTTTGATTCTATCA
452 GAGACAAACTTTGATTCTATCA
* * * *
27371 AAAACAGTGGAAA-AAAAACTTTTCTTGTGATC-CCAAAGCATCAATGTCTTGTATACTAATGAA
1 AAAACGGTGGAAAGAAAAGCTTTTCTTGCGA-CACCAAAGCATCAATGTCTTGTATCCTAATGAA
* * * * *
27434 GGGAATGTGTTTTGGCTTACTAATTTTAAAAAGAATGGAGACTGTTACAAGAATTGATGCTTGTC
65 GGGAATGTGTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTGTTACAAGAATCGATGCTTGTC
* * *
27499 TTATTTAAGGGATGAACTTTAATTTTAAGGAAAATAAGGCAAAAAAAAGATTTCCATACAAAAGA
130 TTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGA
* * * *
27564 AAATCATCAATATCATTTATCCTAATGAGGTGAATTTGCTTT-TAGCGCCTAATCACAAAATGAA
195 AAATCATTAATATCATTTATCCTAATGAGGAGAATGTG-TTTATAGTGCCTAATCACAAAATGAA
* * * * * ** * *
27628 TGAAGATCTTTACTAGAATTCGTGTTTGTCTTATTTGTGGTGCGAACATAGACTTTTCAAAAATT
259 TGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATT
* * * *
27693 GGTGGGAAAAAAGCCTTTCTTGCAAAACCAAAGCATCAATATGATGCATCCTAAAGA-AAAAGCT
324 GGTGGG-AAAAAGCCTTTCTTGC-GAACCAAAGCATCAATATG-TGTATCCTAATGAGAAGA-CT
* * * * * * *
27757 ATGTTTATGGTGCCTAATCCTGAAAAGAACGGGGATTAGTATGAGTATTCATGTTTGCCGTATTG
385 ATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATCAGTATGACTATTCAAGTTTGTCTTATTT
* **
27822 AGGAGACAAACTTTGATTCTAAAA
450 AAGAGACAAACTTTGATTCTATCA
** *
27846 AAAACGGTGGAAAGAAAAGCACTTCTTACGACACCAACA-CATCAATGTCTTGTATCCTAATGAA
1 AAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAA-AGCATCAATGTCTTGTATCCTAATGAA
* * * * * * * *
27910 GGGAATGCGTTTTTGGCTTCCTAGTCTTGAAAAAAAAGGAGACTGCTACGAGAATCGATGCTCGT
65 GGGAATGTG-TTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTGTTACAAGAATCGATGCTTGT
* * *
27975 CATATTTAAGGTATGAACTTTCA---T--GG----T-A---AAA-AAAAGATTTCCATGCAAAAG
129 CTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAG
* * * ** *
28026 AAAAGCATTAATATCATTTATCCTAATGAGGAGAATGTGTTTATAATGCCAAATCATGAAATAAA
194 AAAATCATTAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAA
* * * *
28091 TGAAGATCATTACTAGAATCTATGTTTGTCTCACTTGAGGCATGAACTTAGACTTTACGAAAATT
259 TGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATT
* * *
28156 GGTGAGAAAATGCCTTTCTTGCAAACCCAAAGCATCAATATTGTGTATCCTAATGAGAAGACTAT
324 GGTGGGAAAAAGCCTTTCTTGCGAA-CCAAAGCATCAATA-TGTGTATCCTAATGAGAAGACTAT
* * * * * *
28221 GCTTATAGTGCCTAATCTTGGAAAGAATGGGGATCATTATGACTATTCAAGCTTGTCTTATTTAA
387 GTTTATGGTGCCTAATCCTGAAAAGAATGGGGATCAGTATGACTATTCAAGTTTGTCTTATTTAA
28286 GAGACAAACTTTGATTCTATCA
452 GAGACAAACTTTGATTCTATCA
* * * * *
28308 AAAACAGTGGAAAGAAAAGCTTTTGTTGCGATC-CCAAAGCATCAACGTCATGCATCCTAATGAA
1 AAAACGGTGGAAAGAAAAGCTTTTCTTGCGA-CACCAAAGCATCAATGTCTTGTATCCTAATGAA
*
28372 AGGAATGTGTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTAG-TAC---AA--G--G---G-
65 GGGAATGTGTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACT-GTTACAAGAATCGATGCTTGT
* *
28425 C-----T-----AT--ACTCTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTT-CATGGAAAAG
129 CTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAG
* * * * * **
28477 AAAATCCTTAACATCATTTATCCTAATAAGAAAAAAATGTTTATAGTGCCTAATCACAAAATGAA
194 AAAATCATTAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAA
* * *
28542 TGAAGATCATTACTATAATCCATGTTTGTCTCATTTAAGGCATGAACTTAGACTTTA-AGAAAAT
259 TGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACA-AAAAT
* * *
28606 TGGT-GGAAAAATCCCTTTCTTGCGAACCGAAAGCATCAATATCATGTACCCTAATGAGAAGACT
323 TGGTGGGAAAAA-GCCTTTCTTGCGAACC-AAAGCATCAATAT-GTGTATCCTAATGAGAAGACT
* * * * *
28670 AAGTTTATGGTGCCTAGTCATGAAAAGAATGGGGATCAGTAGGACTATTCAAGTTTGTCTTATTC
385 ATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATCAGTATGACTATTCAAGTTTGTCTTATTT
*
28735 AAGAGACAAACTTTGTTTCTATCA
450 AAGAGACAAACTTTGATTCTATCA
* * * * * *
28759 AAATCGATGGAAAGAAAAGCTTTTCTTGCAACACCCAAGCTTCATTGTCTTGTATCCTAATGAAG
1 AAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCTTGTATCCTAATGAAG
* ** * * ** * *
28824 GAAATGCATTTTGGCTTCCCAATCTTGAAAGGAATGGAGACTATTATGAGAATCGATACTTGTTT
66 GGAATGTGTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTGTTACAAGAATCGATGCTTGTCT
* * * * * * *
28889 TTTTTAAAGGATCAACTTTGATTTTAAGGAAAATATGGTAAAGAAAAGATTTTC-TCGTAAAATA
131 TATTTAAGGGATGAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCAT-G-CAAA-A
* * * * * * *
28953 AAAAATCATCAATACCGTTTATTCTTAAAG-GGAGAATGTGTTTATAGTGCCTAATTACAAAATG
193 GAAAATCATTAATATCATTTA-TCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATG
* * * *
29017 AATGATGACCTTTACTATAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAA
257 AATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAA
* * *
29082 TTAGTGGGAAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATGATG-AACGCCAATGAGAAGA
322 TTGGTGGG-AAAAAGCCTTTCTTGCG-AACCAAAGCATCAATATG-TGTATC-CTAATGAGAAGA
* ** * * * * *
29146 CTATGTTTATGGTGCCTAATCCTTAAAAGAATCAGGATTAGCATGAGTATTTATGTTTGTCTTAT
383 CTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATCAGTATGACTATTCAAGTTTGTCTTAT
* * *
29211 TTAAGAAACAAACTTTAATTCTCTCA
448 TTAAGAGACAAACTTTGATTCTATCA
* * * * *
29237 AAAACGATGGAAAGCAAAGCTTTTCTTGCGACACCAAAACGTCAATGTCATGTATCCTAATGAAG
1 AAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCTTGTATCCTAATGAAG
* * * * * * *
29302 GGAATGTGTTTTAGCTTCCC-A-GTT-CAAAGGAT--AAACTTTGATTTTA-AAGAA--AAT--A
66 GGAATGTGTTTTGGCTTCCCAATCTTGAAAAGAATGGAGAC--TG---TTACAAGAATCGATGCT
* ** * * **** * * * * ** *
29357 TG--GTA---AA--GAAAATATTTTCACGCAAAAGAAAATCA-TC-AATATCA-TTTATCC-TG-
126 TGTCTTATTTAAGGGATGA-ACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATT-TCCATGC
* ** * * * ** ** *
29410 AAAAGGAGAATGTGTTTATAGTGC-CTAACTACAAAATGA--ATG-ATGACCTTTCTAGAAT-CC
189 AAAA-GAAAAT-CATTAATA-T-CATTTA-T-CCTAATGAGGA-GAATG-TGTTTATAG--TGCC
** ** *** * * * * *** * *
29470 ATGTTTGCCTCAT--TTG-AG-GCATGAACTTAG-A--C---TTTATAAAAATTG-GTG--GGAA
244 -TAATCACAAAATGAATGAAGATCAT-TAC-TAGAATCCATGTTTGTCTCATTTGAG-GCACGAA
*** * * * * *** * * *
29522 AAAAGCCTTT-C-----TT-G-CGAAACCAAAGCATCAATATGATGAATGCCAATG-A-GAATA-
305 CTTAGACTTTACAAAAATTGGTGGGAA--AAAGCCTTTCT-TG-CGAA--CCAAAGCATCAATAT
* * * * * * * **
29576 CTATAT--TTATG-G-TGCCTA-----A---T--C-----CTGAAAAGAGCT-AGGATTTGTATG
364 GTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGA-ATGGGGATCAGTATG
* * * *
29621 AGTATTTATA-TTTGTCTTATTTAAAAGACAAACTTTGATTCTACCA
428 ACTATTCA-AGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCA
* * * *
29667 AAAACGGTGGAAAGTAAAGCTTTTCTTGCCACACCAAAGCTTCAATGTCATGTATCCTAATGAAG
1 AAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCTTGTATCCTAATGAAG
* * * * *
29732 GGAATGTGTTTTGGCTTCCGAATCTTGAAAAGAATGGAGATTATTACAGGAATCGATGCTTGTTT
66 GGAATGTGTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTGTTACAAGAATCGATGCTTGTCT
* * * * * ***
29797 TATTTAAAGGATAAACTTTGATTTTACGAAAAATAAGGTAAAGAAAAGATTTTTGTGCGAAAA-A
131 TATTTAAGGGATGAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATGC-AAAAGA
* ** * * * * * * *
29861 AAATTATCGATATCATTTATCATAATGAGGAGAATATGTTTGTACTGCCTAATCACAATATTAAA
195 AAATCATTAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAAT
* * * * * * *
29926 GAAGATCATTACTAAAATCCACGTTTGCCTTATTTGAGGCATGAACCTAGACTTTACGAAAATTG
260 GAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTG
* * * * *
29991 GTGGGAAAAATGCTTTTCTTGCAAACCCAAAGCATCAATATCGTGTATCTTAATGAGAAGACAAC
325 GTGGGAAAAA-GCCTTTCTTGCGAA-CCAAAGCATCAATAT-GTGTATCCTAATGAGAAGACTAT
* * * * * *
30056 GTTTTATGGTGCCTAAACTTGAAAAAAACT-GGGAT-TGATATGAGTATTCATGTTTGTCTTATT
387 G-TTTATGGTGCCTAATCCTGAAAAGAA-TGGGGATCAG-TATGACTATTCAAGTTTGTCTTATT
* *
30119 TAAAAGACAAACTTTGATTCTATTA
449 TAAGAGACAAACTTTGATTCTATCA
** * * **
30144 AAAACGGTGGAAAGAAAAGCTTTTCTTGCGACATTAAAGCTTCAATGTCATGTATTATAATGAAG
1 AAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCTTGTATCCTAATGAAG
*
30209 GGAATGTGTTTTGGCTTCCCAATCTTGAAAAGAATGGATACTGTTA-AGAGAATCGATGCTTGTC
66 GGAATGTGTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTGTTACA-AGAATCGATGCTTGTC
* * * * * *
30273 TTATTTAAAGGATAAACTTTGA-TTTAAGGGAAAATAGGGTAAAGATAAGATTTTCATGCAAAAG
130 TTATTTAAGGGATGAACTTTGATTTTAA-GGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAG
*
30337 AAAATCATTAAGA-CATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAA
194 AAAATCATTAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAA
* * * * * * * *
30401 TAAACATCTTTACTAGAATCCATGTTTGTCTTACTTGAGGCATGAACATAGACTTTACAGAAATT
259 TGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATT
* * * * * * *
30466 GGTAGGAAAAATGCCTTTCTTGTGAACCTAAGGCATCAATATTATGTATCCTATTGAGAAAAGTA
324 GGTGGGAAAAA-GCCTTTCTTGCGAACC-AAAGCATCAATA-TGTGTATCCTAATGAGAAGACTA
* * * * *
30531 TGTTTATGGTGCCTAATCCTCAAAAAAAGAATAGGGA-CTAGTATAACTATTCATGTTTGTCCTA
386 TGTTTATGGTGCCTAATCCT---GAAAAGAATGGGGATC-AGTATGACTATTCAAGTTTGTCTTA
* *
30595 TTTATGAGACAAACTTTGATTCTTTCA
447 TTTAAGAGACAAACTTTGATTCTATCA
* ** ** * * *
30622 AAAATGGTGGAAAGAAAAGCTTTTCTTATGTTACCAAAGCATCAATGTCATGTATCCTAATAAAA
1 AAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCTTGTATCCTAATGAAG
* * * *
30687 GGAATGTGTTTTTGGCTTCCTAGTCTTGAAAAGAATGTAGACTGTTAGAAGAATCGATGCTTGTC
66 GGAATGTG-TTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTGTTACAAGAATCGATGCTTGTC
* * * *
30752 TTATTTAAGGTATGAACCTTGACTTTAAGGAAAATAGGGCAAA-AAAACGATTTCCATGCAAAA-
130 TTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAA-GATTTCCATGCAAAAG
* * *
30815 AAAATCATCAATATCATTTATCCTAATGAGGAGAATGTATTTAT-GTGCCTAATCACAAAATAAA
194 AAAATCATTAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAA
* * * * * *
30879 TGAAGATCATTACTAGAATCCTTATTTGTCTCATTTGTGGGATGAACTTAGACTTTACAAAAAAT
259 TGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATT
* * * * *
30944 AGTGGGAAAAAAGCCTTTCTTGCGAAACCAAAGCTTCAATATTATGTATGCTAATGAGAACACTA
324 GGTGGG-AAAAAGCCTTTCTTGCG-AACCAAAGCATCAATA-TGTGTATCCTAATGAGAAGACTA
* * * * *
31009 TGTTTATGGTGCCTAATCCTAAAAAGAACGGGGATCAGTATGAGTATTTATGTTTGTCTTATTTA
386 TGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATCAGTATGACTATTCAAGTTTGTCTTATTTA
* *
31074 AGAAACAAAATTTGATTCTATCA
451 AGAGACAAACTTTGATTCTATCA
* ** * * *
31097 AAAATGGTGGAAAGAAAAGCTTTTCTTGCGATTCCAAAGCATCAATGTCATATATGCTAATGAAG
1 AAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCTTGTATCCTAATGAAG
* * * * *
31162 GAAATGTTTTTTGGCTTCCCAGTCTTGAAAAGAATGGAGTCTCTTACAAGAATCGATGCTTGTCT
66 GGAATGTGTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTGTTACAAGAATCGATGCTTGTCT
* ** * * * * * *
31227 TATGTAAAAGATAAACTTTGATTTTCAGTAAAATAGGGTAAAGAAAAGATTTCCATGCAAAAGGA
131 TATTTAAGGGATGAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAA
* * * * *
31292 AATCATCAATATCATTTATCCTAATGAGGAGAATGTATTGATAGTACATAATCACAAAATGAATG
196 AATCATTAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATG
* *
31357 AAGATCATTACTAGAATCTATGTTTGTCTCATTTGAGGCCCGAACTTAGACTTTACAAAAATTGG
261 AAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGG
31422 TGGGAAAAAAGCCTTTCTTGCGAA
326 TGGG-AAAAAGCCTTTCTTGCGAA
31446 TATATTGCCC
Statistics
Matches: 6034, Mismatches: 1082, Indels: 549
0.79 0.14 0.07
Matches are distributed among these distances:
430 138 0.02
431 6 0.00
432 2 0.00
433 9 0.00
435 5 0.00
437 3 0.00
438 5 0.00
439 6 0.00
440 14 0.00
441 24 0.00
442 15 0.00
443 15 0.00
444 9 0.00
445 5 0.00
446 5 0.00
447 12 0.00
448 4 0.00
449 11 0.00
450 20 0.00
451 349 0.06
452 11 0.00
453 10 0.00
454 6 0.00
455 11 0.00
456 8 0.00
457 16 0.00
458 3 0.00
459 13 0.00
460 67 0.01
461 93 0.02
462 314 0.05
463 275 0.05
464 20 0.00
465 25 0.00
466 5 0.00
467 24 0.00
468 4 0.00
469 1 0.00
470 2 0.00
471 35 0.01
472 368 0.06
473 25 0.00
474 1021 0.17
475 719 0.12
476 503 0.08
477 602 0.10
478 776 0.13
479 219 0.04
480 23 0.00
481 173 0.03
482 5 0.00
ACGTcount: A:0.36, C:0.14, G:0.18, T:0.31
Consensus pattern (473 bp):
AAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCTTGTATCCTAATGAAG
GGAATGTGTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTGTTACAAGAATCGATGCTTGTCT
TATTTAAGGGATGAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAA
AATCATTAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATG
AAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGG
TGGGAAAAAGCCTTTCTTGCGAACCAAAGCATCAATATGTGTATCCTAATGAGAAGACTATGTTT
ATGGTGCCTAATCCTGAAAAGAATGGGGATCAGTATGACTATTCAAGTTTGTCTTATTTAAGAGA
CAAACTTTGATTCTATCA
Found at i:25572 original size:159 final size:160
Alignment explanation
Indices: 23909--27014 Score: 569
Period size: 159 Copynumber: 19.6 Consensus size: 160
23899 AAAATTGGTG
* * * ** * * *
23909 AGAAAATGCCTTTCTTGCGAACCCAAAGCATCAATATTGTGTATCCTAATGAGAAGACTGTGCTT
1 AGAAAA-GCTTTTCTTGCAAAACCAAAGCATCAATATCATGTATCCTAATGAG-GGAATGTGTTT
* * * ** * * *
23974 ACGG-TGC-CTAATCTTGAAAAGAATAGG-GATCATTATGACTATTCAAGTTTGTCTTATTTGAG
64 ATGGCTTCTC-AATCTTGAAAAGAAT-GGAGATTATTATGAGAATCCATGTTTGTCTTATTTAAG
* *
24036 AG-ACAAAGTTTGATTCTATCAAAAACGGTGGAA
127 AGAACAAACTTTGATTCTATCAAAAACAGTGGAA
* ** * * * **
24069 AGAAAAGCTTTTCTTGCGATCCCAACGCATCAATGTCATGCATCCTAATGAAAAGAATGTGTTT-
1 AGAAAAGCTTTTCTTGCAAAACCAAAGCATCAATATCATGTATCCTAATG-AGGGAATGTGTTTA
* * * * ** *
24133 TGGCTTCCCAATCTTAAAAAGAATGGATACTATTAT-AGGAATTGATGCTTGTCTTATTTAAG-G
65 TGGCTTCTCAATCTTGAAAAGAATGGAGATTATTATGA-GAATCCATGTTTGTCTTATTTAAGAG
* * * ** *
24196 -GCTGAACTTTGATTTTAAGGAAAATA-AG-GCAA
129 AAC-AAACTTTGATTCT-ATCAAAA-ACAGTGGAA
* * * ** * * ** *
24228 AGAAAAG-ATTTCATGGAAAAGTAAATCATTAACGTCATTTATCCTAATGAGGAGAATGTGTTTA
1 AGAAAAGCTTTTCTTGCAAAACCAAAGCATCAATATCATGTATCCTAATGAGG-GAATGTGTTTA
** * * *
24292 TAGTGC--CT-AATC-ACAAAATGAATGAAGATCATTACT-AGAATCCATGTTTGTCTCATTTAA
65 T-G-GCTTCTCAATCTTGAAAA-GAATGGAGATTATTA-TGAGAATCCATGTTTGTCTTATTTAA
* ** * * ***
24352 G-GCATGAACTTAGACTT-TATGAAAATTGGTGG--
126 GAGAACAAACTTTGA-TTCTATCAAAAACAGTGGAA
* * * * * * * *
24384 -GAAAATGCCTTTCTTGC-GAACCAAAAGCATTAATATCGTGTACCCTAATGAGAAGACTATGTT
1 AGAAAA-GCTTTTCTTGCAAAACC-AAAGCATCAATATCATGTATCCTAATGAG-GGAATGTGTT
** * ** * * * ** * * *
24447 TATGGCGCCT-AGTCAAGAAAAGAATGGGGATCAGTATGACTATTCAAGTTTATCTTATTTAAGA
63 TATGGCTTCTCAATCTTGAAAAGAATGGAGATTATTATGAGAATCCATGTTTGTCTTATTTAAGA
* * *
24511 G-GCAAACTTTGATTTTATCAAAAATAGTGGAA
128 GAACAAACTTTGATTCTATCAAAAACAGTGGAA
** * * * * * * * * * *
24543 AGAAAAATTTTTCTTACGACACCAAAGCTTTAATGTCTTGTATCCTAATGAGGGGATTGCGCTT-
1 AGAAAAGCTTTTCTTGCAAAACCAAAGCATCAATATCATGTATCCTAATGA-GGGAATGTGTTTA
* * * ** * * * * * *
24607 TGGGTTCCCAATCTTGAAAAGAATGGAGACTATTACAAGACTCGATGCTTCTTTTTTTTAATG-G
65 TGGCTTCTCAATCTTGAAAAGAATGGAGATTATTATGAGAATCCATGTTTGTCTTATTTAA-GAG
* * * *** *
24671 -ATAAACTTTTATTTTAAGGAAAATA-TGGTAA
129 AACAAACTTTGATTCTATCAAAAACAGTGG-AA
* * ** ** * * * *
24702 AGAAAAGATTATCACGCAAAAGAAAATCATCAATACCAAT-TATACTAAAG-GGAGAATGTGTTT
1 AGAAAAGCTTTTCTTGCAAAACCAAAGCATCAATATC-ATGTATCCTAATGAGG-GAATGTGTTT
** * * *
24765 ATAGTGC--CT-AAT-TACAAAATGAAT-GATGACCT-TTACT-ATAATCCATGTTTGTCTCATT
64 AT-G-GCTTCTCAATCTTGAAAA-GAATGGA-GA-TTATTA-TGAGAATCCATGTTTGTCTTATT
* * * * * *
24823 TGAG-GCACGAACTTAGAGTT-TA-CAAAAATTAGTGGGA
123 TAAGAGAACAAACTTTGA-TTCTATCAAAAA-CAGTGGAA
* * ** * *** *
24860 AG-AAAGCCTTTCTTGCGAAACCAAAGCATCAATATGGTGAATGCC-AATGACAAAACTATGTTT
1 AGAAAAGCTTTTCTTGCAAAACCAAAGCATCAATATCATGTAT-CCTAATGAGGGAA-TGTGTTT
* * * * ** * *
24923 ATGG-TGC-CTAATCCTT-AAAAGGACGG-G--GAGCATGAGTATTCATGTTTGTCTTATTTAAG
64 ATGGCTTCTC-AAT-CTTGAAAAGAATGGAGATTATTATGAGAATCCATGTTTGTCTTATTTAAG
*
24982 A-AACACACTTTGATTCTATCAAAAACAGTGGAA
127 AGAACAAACTTTGATTCTATCAAAAACAGTGGAA
* ** ** * *
25015 AGAAAAGCTTTTCTTGCGATCCCAAAGTGTCAATGTCATGTATCCTAATGAAGGGAATGTGATT-
1 AGAAAAGCTTTTCTTGCAAAACCAAAGCATCAATATCATGTATCCTAATG-AGGGAATGTGTTTA
* * * * * *
25079 TGGCTTCCCAATCTTGAAAAGAATGGAAACTATTATGAGAATCCGTGCTTGTCTTATTTAA-AGG
65 TGGCTTCTCAATCTTGAAAAGAATGGAGATTATTATGAGAATCCATGTTTGTCTTATTTAAGAGA
* * * *** * * * *
25143 ATAAACTTTTATTTTAAGGAAAATAGCGTAT
130 ACAAACTTTGATTCTATCAAAAACAGTGGAA
* ** ** * * * *
25174 AGAAAAGATTTT-TAACAAAAAAAAATCATCAATATCATTTATCCTAATGAGGAGAATATATTTA
1 AGAAAAGCTTTTCTTGCAAAACCAAAGCATCAATATCATGTATCCTAATGAGG-GAATGTGTTTA
** * * * * *
25238 TAGTGC--CT-AATC-ACAAAATAAAT-GAGGATCATTATTAGAATCCATGTTTGTCTCATTTGA
65 T-G-GCTTCTCAATCTTGAAAA-GAATGGA-GATTATTATGAGAATCCATGTTTGTCTTATTTAA
* *** **
25298 G-GCACAAACTTTGACTTC-A-CAAAATTTGGTGGGC
126 GAGAACAAACTTTGA-TTCTATCAAAA-ACAGTGGAA
* * * *
25332 A-AAAAGCCTTTCTTGCAAAACCAAAGCATCAATATGATGTATCCTAATGAGAAGACTGTGTTTA
1 AGAAAAGCTTTTCTTGCAAAACCAAAGCATCAATATCATGTATCCTAATGAG-GGAATGTGTTTA
* * * *
25396 T-G-TTGC-CTAATCCTGAAAAGAATGGAGATTAGTATGAGTATTCATGTTTGT-TGTATTTAAG
65 TGGCTT-CTC-AATCTTGAAAAGAATGGAGATTATTATGAGAATCCATGTTTGTCT-TATTTAAG
* *
25457 AG-TCAAACTTTGATTCTATCAAAAACGGTGGAA
127 AGAACAAACTTTGATTCTATCAAAAACAGTGGAA
** * * *
25490 AGAAAAGCTTTTCTTGCAATCCCAATGCATCAATGTCATGTATCCTAATGAAGGGAGTGTGTTT-
1 AGAAAAGCTTTTCTTGCAAAACCAAAGCATCAATATCATGTATCCTAATG-AGGGAATGTGTTTA
* * * * * * * *
25554 TGGCTTCTCAATCTTGAAAAGAATGGCGACTGTCATGAGAATCGATGCTTGTCTTACTTAAG-GG
65 TGGCTTCTCAATCTTGAAAAGAATGGAGATTATTATGAGAATCCATGTTTGTCTTATTTAAGAGA
** * *** *
25618 ATTAACTTTGATTTTAAGGAAAGCAG-GGCAA
130 ACAAACTTTGATTCTATCAAAAACAGTGG-AA
* * * ** * * * * * * *
25649 AGATAAGATTTTCATGCAAAAGAAAATCTTCAATATTATTTGTCCTAATGATGAGAATATGTTTA
1 AGAAAAGCTTTTCTTGCAAAACCAAAGCATCAATATCATGTATCCTAATGA-GGGAATGTGTTTA
* * * * * * * *
25714 TAGTGC--CTAAGAAC---AAAATGAATGAAGATCATTACT-ATAATCCTTGTTTGTCTCATTTG
65 T-G-GCTTCTCA-ATCTTGAAAA-GAATGGAGATTATTA-TGAGAATCCATGTTTGTCTTATTTA
* ** * * *
25773 AG-GCAGGAACTTAGACTT-TA-AAAAAAAATGGTAGGAA
125 AGAGAACAAACTTTGA-TTCTATCAAAAACA--GT-GGAA
* * * * ** **
25810 A-AAAAGTTTTTCTTGCGAAACCAAACCATCAATAT-ATTATATGCC-AATGAGAAAACTACGTT
1 AGAAAAGCTTTTCTTGCAAAACCAAAGCATCAATATCA-TGTAT-CCTAATGAGGGAA-TGTGTT
* * * ** * * * *
25872 TATCGTGC--CT-AATCCTAAAAATAA-CAAGGATTAGTGTGAGAATTCATGTTTGTCATATTTA
63 TAT-G-GCTTCTCAATCTTGAAAAGAATGGA-GATTATTATGAGAATCCATGTTTGTCTTATTTA
* *
25933 AGAG-ACAAACTTTCATTCTATCAAAAAC-GTTGCAA
125 AGAGAACAAACTTTGATTCTATCAAAAACAG-TGGAA
* * * * * * * *
25968 AGAAAAGCTTTTCTTGCAATACCAAAACATCAATGTCTTGTATTCGAATAAAGGGAATGTGTTTT
1 AGAAAAGCTTTTCTTGCAAAACCAAAGCATCAATATCATGTATCCTAAT-GAGGGAATGTGTTTA
* * * * * * * ** * *
26033 TGGCTTC-CTAGTCTTGCAAAGAAAAAGGAGACTGTTATGAGAATCGATGCTCATCATATTTATG
65 TGGCTTCTC-AATCTTG-AAA-AGAATGGAGATTATTATGAGAATCCATGTTTGTCTTATTTAAG
* ** * *
26097 -GCATGAACTTTGATT-TA--AAAGAAAATTAGGTAA
127 AGAACAAACTTTGATTCTATCAAA-AACAGT-GG-AA
* * * ** * * * * * *
26130 AGAAAAGGTTTCCATGCAAAAGAAAATCATTAGTATCATTTATCTTGATGAGGAGAATGTGTTTA
1 AGAAAAGCTTTTCTTGCAAAACCAAAGCATCAATATCATGTATCCTAATGAGG-GAATGTGTTTA
* * ** * * * *
26195 TAG-TGTGT-AATC-ACAAAATGAATGAAGATCATTACT-AGAATCCATGTTTGTCTCATTTGAG
65 TGGCT-TCTCAATCTTGAAAA-GAATGGAGATTATTA-TGAGAATCCATGTTTGTCTTATTTAAG
* * * ** *
26256 -GCACAAA-TTAAGACTT-T-TAAAAAATTGGTGGGA
127 AGAACAAACTT-TGA-TTCTATCAAAAA-CAGTGGAA
* * * * * * * *
26289 A-AAAAGCCTTTCGTGCGAAACCAAAGCATCAATATCGTGTAACCTACA-GAGAAGACTATGTTT
1 AGAAAAGCTTTTCTTGCAAAACCAAAGCATCAATATCATGTATCCTA-ATGAG-GGAATGTGTTT
* * * * * * ** * *
26352 ATGG-TAC-CGATCCTGAAAAGTATGG-GGTTCAGTATGACTATTCAAGTTTGTCTTATTTAAGA
64 ATGGCTTCTCAATCTTGAAAAGAATGGAGATT-ATTATGAGAATCCATGTTTGTCTTATTTAAGA
*
26414 G-ACAAACTTTGATTCTATCAAAAACGGTGGAA
128 GAACAAACTTTGATTCTATCAAAAACAGTGGAA
* ** ** * * *
26446 A-AAAAACTTTTCTTGTGATCCCAAAGCATCAATGTCTTGTATACTAATGAAGGGAATGTGTTT-
1 AGAAAAGCTTTTCTTGCAAAACCAAAGCATCAATATCATGTATCCTAATG-AGGGAATGTGTTTA
* * * * ** ** *
26509 TGGCTTACT-AATTTTAAAAAGAATGGAGACTGTTACAAGAATTGATGCTTGTCTTATTTAAG-G
65 TGGCTT-CTCAATCTTGAAAAGAATGGAGATTATTATGAGAATCCATGTTTGTCTTATTTAAGAG
* ** * * ** *
26572 GATGAACTTTAATTTTAAGGAAAATA-AG-GCAA
129 AACAAACTTTGATTCT-ATCAAAA-ACAGTGGAA
* * * * * ** * * * *
26604 AAAAAAGATTTCCATACAAAAGAAAATCATCAATATCATTTATCCTAATGAGGTGAATTTGCTTA
1 AGAAAAGCTTTTCTTGCAAAACCAAAGCATCAATATCATGTATCCTAATGAGG-GAATGTGTTTA
* ** ** * * * **
26669 TAGCGCCT-AATC-ACAAAATGAATGAAGATCT-TTACT-AGAATTCGTGTTTGTCTTATTTGTG
65 TGGCTTCTCAATCTTGAAAA-GAATGGAGAT-TATTA-TGAGAATCCATGTTTGTCTTATTTAAG
** * * * ** *
26730 -GTGCGAACATAGACTT-T-TCAAAAATTGGTGGGA
127 AGAACAAACTTTGA-TTCTATCAAAAA-CAGTGGAA
* * * * ** *
26763 A-AAAAGCCTTTCTTGCAAAACCAAAGCATCAATATGATGCATCCTAAAGA-AAAAGCTATGTTT
1 AGAAAAGCTTTTCTTGCAAAACCAAAGCATCAATATCATGTATCCTAATGAGGGAA--TGTGTTT
* * * * * * * * * * *
26826 ATGG-TGC-CTAATCCTGAAAAGAACGGGGATTAGTATGAGTATTCATGTTTGCCGTATTGAGGA
64 ATGGCTTCTC-AATCTTGAAAAGAATGGAGATTATTATGAGAATCCATGTTTGTCTTATTTAAGA
** *
26889 G-ACAAACTTTGATTCTAAAAAAAACGGTGGAA
128 GAACAAACTTTGATTCTATCAAAAACAGTGGAA
** * * * * * *
26921 AGAAAAGCACTTCTTACGACACCAACA-CATCAATGTCTTGTATCCTAATGAAGGGAATGCGTTT
1 AGAAAAGCTTTTCTTGCAAAACCAA-AGCATCAATATCATGTATCCTAATG-AGGGAATGTGTTT
* * * *
26985 TTGGCTTC-CTAGTCTTGAAAAAAAAGGAGA
64 ATGGCTTCTC-AATCTTGAAAAGAATGGAGA
27015 CTGCTACGAG
Statistics
Matches: 2062, Mismatches: 685, Indels: 398
0.66 0.22 0.13
Matches are distributed among these distances:
154 3 0.00
155 55 0.03
156 80 0.04
157 284 0.14
158 572 0.28
159 760 0.37
160 173 0.08
161 44 0.02
162 90 0.04
163 1 0.00
ACGTcount: A:0.36, C:0.14, G:0.19, T:0.31
Consensus pattern (160 bp):
AGAAAAGCTTTTCTTGCAAAACCAAAGCATCAATATCATGTATCCTAATGAGGGAATGTGTTTAT
GGCTTCTCAATCTTGAAAAGAATGGAGATTATTATGAGAATCCATGTTTGTCTTATTTAAGAGAA
CAAACTTTGATTCTATCAAAAACAGTGGAA
Found at i:27383 original size:937 final size:942
Alignment explanation
Indices: 23579--29322 Score: 6199
Period size: 937 Copynumber: 6.1 Consensus size: 942
23569 ATTCATGTTT
* * ** * *
23579 AAAACGGTGGAAATAAAAGGTTTTCTGGCGA-CACCAAAACATCAATGTCTTGTATCCTAATGAA
1 AAAACAGTGGAAAGAAAAACTTTTCTTGCGATC-CCAAAGCATCAATGTCTTGTATCCTAATGAA
* * * * *
23643 GGGAATGTGTTTTTGGCTTCCCAATCTGGAAAAGAAAGGAAACTGCTACAAGAACTGATGCTTGT
65 GGGAATGTG-TTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTGTTACAAGAATTGATGCTTGT
* * * * * * *
23708 CATATTTAAGGTACAAACTTTGATTTAAAAGGAAACTAGGGTAAAAAAAAAGATTTCCATGCAAA
129 CTTATTTAAGGGATAAACTTTGATTT-TAAGGAAAATAAGG-CAAAAAAAAGATTTCCATGCAAA
* * * * *
23773 AGAAAACCATTAATATCATTTATCCTGATGAGGAGAATGTGTTTATAGTGCCAAATCACAAAATG
192 AGAAAATCATCAATATCATTTATCCTAATGAGGAGAATATGTTTATAGTGCCTAATCACAAAATG
* * * *
23838 AATGAAGATCATTACTAGAATCTATGTTTGTCTCACTTGAGGCATGAACTTAGACTTTACGAAAA
257 AATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAA
* * * *
23903 TTGGTGAG-AAAATGCCTTTCTTGCGAACCCAAAGCATCAATATTG-TGTATCCTAATG-AGAAG
322 TTGGTGGGAAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATA-TGATGTATCCTAATGAAAAAG
* * * * ** * * * *
23965 ACTGTGCTTACGGTGCCTAATCTTGAAAAGAATAGGGATCATTATGACTATTCAAGTTTGTCTTA
386 -CTATGTTTATGGTGCCTAATCCTGAAAAGAACGGGGATTAGTATGAGTATTCATGTTTGTCTTA
*
24030 TTTG-AGAGACAAAGTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGATC-CCA
450 -TTGAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGA-CACCA
* * * ** *
24093 ACGCATCAATGTCATGCATCCTAATGAAAAGAATGTG-TTTTGGCTTCCCAATCTT-AAAAAGAA
513 ACACATCAATGTCTTGTATCCTAATGAAGGGAATGCGTTTTTGGCTTCCCAATCTTGAAAAA-AA
* * * * * * *
24156 TGGATACTATTAT-AGGAATTGATGCTTGTCTTATTTAAGGGCTGAACTTTGATTTTAAGGAAAA
577 AGGAGACTATTATGA-GAATCGATGCTCGTCATATTTAA-GGATGAACTTTCA--TT-AGG---A
* * **
24220 TAAGGCAAAGAAAAGATTT-CATGGAAAAGTAAATCATTAACGTCATTTATCCTAATGAGGAGAA
634 T-A-G-AAA-AAAAGATTTCCATGCAAAAGAAAATCATTAATATCATTTATCCTAATGAGGAGAA
*
24284 TGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATT
695 TGTGTTTATAGTGCCTAATCACAAAATAAATGAAGATCATTACTAGAATCCATGTTTGTCTCATT
* * * * *
24349 TAAGGCATGAACTTAGACTTTATGAAAATTGGTGGG-AAAATGCCTTTCTTGCGAACCAAAAGCA
760 TGAGGCATGAACTTAGACTTTACGAAAATTGGTGGGAAAAAAGCCTTTCTTGCAAACCCAAAGCA
* * * * * **
24413 TTAATATCGTGTACCCTAATGAGAAGACTATGTTTATGGCGCCTAGTCAAGAAAAGAATGGGGAT
825 TCAATATTGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCTTGAAAAGAATGGGGAT
* * *
24478 CAGTATGACTATTCAAGTTTATCTTATTTAAGAGGCAAACTTTGATTTTATCA
890 CAGTATGACTATTCAAGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCA
* * * * * *
24531 AAAATAGTGGAAAGAAAAATTTTTCTTACGA-CACCAAAGCTTTAATGTCTTGTATCCTAATGAG
1 AAAACAGTGGAAAGAAAAACTTTTCTTGCGATC-CCAAAGCATCAATGTCTTGTATCCTAATGAA
* * * * * * * * *
24595 GGGATTGCGCTTTGGGTTCCCAATCTTGAAAAGAATGGAGACTATTACAAGACTCGATGCTTCTT
65 GGGAATGTGTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTGTTACAAGAATTGATGCTTGTC
* * * * * * *
24660 TTTTTTAATGGATAAACTTTTATTTTAAGGAAAATATGGTAAAGAAAAGATTAT-CACGCAAAAG
130 TTATTTAAGGGATAAACTTTGATTTTAAGGAAAATAAGGCAAAAAAAAGATT-TCCATGCAAAAG
* * * * * *
24724 AAAATCATCAATACCAATTATACTAAAG-GGAGAATGTGTTTATAGTGCCTAATTACAAAATGAA
194 AAAATCATCAATATCATTTATCCTAATGAGGAGAATATGTTTATAGTGCCTAATCACAAAATGAA
* * * * *
24788 TGATGACCTTTACTATAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGAGTTTACAAAAATT
259 TGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATT
* * * *
24853 AGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATGGTGAATGCC-AATGACAAAA-C
324 GGTGGGAAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATGATGTAT-CCTAATGA-AAAAGC
* * *
24916 TATGTTTATGGTGCCTAATCCTTAAAAGGACGGGG---AGCATGAGTATTCATGTTTGTCTTATT
387 TATGTTTATGGTGCCTAATCCTGAAAAGAACGGGGATTAGTATGAGTATTCATGTTTGTCTTATT
* * * *
24978 TAAGAAACACACTTTGATTCTATCAAAAACAGTGGAAAGAAAAGCTTTTCTTGCGATC-CCAA-A
452 GAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGA-CACCAACA
** * * * * *
25041 GTGTCAATGTCATGTATCCTAATGAAGGGAATGTG-ATTTGGCTTCCCAATCTTGAAAAGAATGG
516 -CATCAATGTCTTGTATCCTAATGAAGGGAATGCGTTTTTGGCTTCCCAATCTTGAAAAAAAAGG
* * * * *
25105 AAACTATTATGAGAATCCG-TGCTTGTCTTATTTAAAGGATAAACTTTTATTTTAAGGAAAATAG
580 AGACTATTATGAGAAT-CGATGCTCGTCATATTT-AAGGATGAACTTTCA--TT-AGG---ATA-
* ** * * * *
25169 CGTATAGAAAAGATTTTTA-ACAAAAAAAAATCATCAATATCATTTATCCTAATGAGGAGAATAT
636 -G-A-AAAAAAGATTTCCATGCAAAAGAAAATCATTAATATCATTTATCCTAATGAGGAGAATGT
* * *
25233 ATTTATAGTGCCTAATCACAAAATAAATGAGGATCATTATTAGAATCCATGTTTGTCTCATTTGA
698 GTTTATAGTGCCTAATCACAAAATAAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGA
** * * * *
25298 GGCACAAACTTTGACTTCAC-AAAATTTGGTGGGCAAAAAGCCTTTCTTGCAAAACCAAAGCATC
763 GGCATGAACTTAGACTTTACGAAAA-TTGGTGGGAAAAAAGCCTTTCTTGCAAACCCAAAGCATC
* * * * *
25362 AATA-TGATGTATCCTAATGAGAAGACTGTGTTTATGTTGCCTAATCCTGAAAAGAATGGAGATT
827 AATATTG-TGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCTTGAAAAGAATGGGGATC
* * *
25426 AGTATGAGTATTCATGTTTGT-TGTATTTAAGAGTCAAACTTTGATTCTATCA
891 AGTATGACTATTCAAGTTTGTCT-TATTTAAGAGACAAACTTTGATTCTATCA
* * * * *
25478 AAAACGGTGGAAAGAAAAGCTTTTCTTGCAATCCCAATGCATCAATGTCATGTATCCTAATGAAG
1 AAAACAGTGGAAAGAAAAACTTTTCTTGCGATCCCAAAGCATCAATGTCTTGTATCCTAATGAAG
* * * * ** *
25543 GGAGTGTGTTTTGGCTTCTCAATCTTGAAAAGAATGGCGACTGTCATGAGAATCGATGCTTGTCT
66 GGAATGTGTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTGTTACAAGAATTGATGCTTGTCT
* * ** * * * *
25608 TACTTAAGGGATTAACTTTGATTTTAAGGAAAGCAGGGCAAAGATAAGATTTTCATGCAAAAGAA
131 TATTTAAGGGATAAACTTTGATTTTAAGGAAAATAAGGCAAAAAAAAGATTTCCATGCAAAAGAA
* * * * **
25673 AATCTTCAATATTATTTGTCCTAATGATGAGAATATGTTTATAGTGCCTAAGAACAAAATGAATG
196 AATCATCAATATCATTTATCCTAATGAGGAGAATATGTTTATAGTGCCTAATCACAAAATGAATG
* * * * *
25738 AAGATCATTACTATAATCCTTGTTTGTCTCATTTGAGGCAGGAACTTAGACTTTAAAAAAAAATG
261 AAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTT-ACAAAAATTG
* ** * *
25803 GTAGGAAAAAAAGTTTTTCTTGCGAAACCAAACCATCAATAT-ATTATATGCC-AATGAGAAAA-
325 GT-GGGAAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATGA-TGTAT-CCTAATGA-AAAAG
* * * * ** * * *
25865 CTACGTTTATCGTGCCTAATCCTAAAAATAACAAGGATTAGTGTGAGAATTCATGTTTGTCATAT
386 CTATGTTTATGGTGCCTAATCCTGAAAAGAACGGGGATTAGTATGAGTATTCATGTTTGTCTTAT
* * * * * * *
25930 TTAAGAGACAAACTTTCATTCTATCAAAAACGTTGCAAAGAAAAGCTTTTCTTGCAATACCAAAA
451 TGAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAACA
* * * * * *
25995 CATCAATGTCTTGTATTCGAATAAAGGGAATGTGTTTTTGGCTTCCTAGTCTTGCAAAGAAAAAG
516 CATCAATGTCTTGTATCCTAATGAAGGGAATGCGTTTTTGGCTTCCCAATCTTG-AAA-AAAAAG
* * * * *
26060 GAGACTGTTATGAGAATCGATGCTCATCATATTTATGGCATGAACTTTGATTTAAAAGAAAATTA
579 GAGACTATTATGAGAATCGATGCTCGTCATATTTAAGG-ATGAACTTTCA-TT---AG--GA-TA
* * * *
26125 GGTAAAGAAAAGGTTTCCATGCAAAAGAAAATCATTAGTATCATTTATCTTGATGAGGAGAATGT
636 -G-AAA-AAAAGATTTCCATGCAAAAGAAAATCATTAATATCATTTATCCTAATGAGGAGAATGT
** *
26190 GTTTATAGTGTGTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGA
698 GTTTATAGTGCCTAATCACAAAATAAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGA
* * * *
26255 GGCA-CAAATTAAGACTTTTA-AAAAATTGGTGGGAAAAAAGCCTTTCGTGCGAAA-CCAAAGCA
763 GGCATGAACTT-AGAC-TTTACGAAAATTGGTGGGAAAAAAGCCTTTCTTGC-AAACCCAAAGCA
* * * * * * *
26317 TCAATATCGTGTAACCTACA-GAGAAGACTATGTTTATGGTACC-GATCCTGAAAAGTATGGGGT
825 TCAATATTGTGTATCCTA-ATGAGAAGACTATGTTTATGGTGCCTAATCTTGAAAAGAATGGGGA
26380 TCAGTATGACTATTCAAGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCA
889 TCAGTATGACTATTCAAGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCA
* * *
26434 AAAACGGTGGAAA-AAAAACTTTTCTTGTGATCCCAAAGCATCAATGTCTTGTATACTAATGAAG
1 AAAACAGTGGAAAGAAAAACTTTTCTTGCGATCCCAAAGCATCAATGTCTTGTATCCTAATGAAG
* * * *
26498 GGAATGTGTTTTGGCTTACTAATTTTAAAAAGAATGGAGACTGTTACAAGAATTGATGCTTGTCT
66 GGAATGTGTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTGTTACAAGAATTGATGCTTGTCT
* * *
26563 TATTTAAGGGATGAACTTTAATTTTAAGGAAAATAAGGCAAAAAAAAGATTTCCATACAAAAGAA
131 TATTTAAGGGATAAACTTTGATTTTAAGGAAAATAAGGCAAAAAAAAGATTTCCATGCAAAAGAA
* * * *
26628 AATCATCAATATCATTTATCCTAATGAGGTGAATTTGCTTATAGCGCCTAATCACAAAATGAATG
196 AATCATCAATATCATTTATCCTAATGAGGAGAATATGTTTATAGTGCCTAATCACAAAATGAATG
* * * * * ** * *
26693 AAGATCTTTACTAGAATTCGTGTTTGTCTTATTTGTGGTGCGAACATAGACTTTTCAAAAATTGG
261 AAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGG
* * *
26758 TGGGAAAAAAGCCTTTCTTGCAAAACCAAAGCATCAATATGATGCATCCTAAAGAAAAAGCTATG
326 TGGGAAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATGATGTATCCTAATGAAAAAGCTATG
* * *
26823 TTTATGGTGCCTAATCCTGAAAAGAACGGGGATTAGTATGAGTATTCATGTTTGCCGTATTGAGG
391 TTTATGGTGCCTAATCCTGAAAAGAACGGGGATTAGTATGAGTATTCATGTTTGTCTTATTGAAG
** ** *
26888 AGACAAACTTTGATTCTAAAAAAAACGGTGGAAAGAAAAGCACTTCTTACGACACCAACACATCA
456 AGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAACACATCA
* * *
26953 ATGTCTTGTATCCTAATGAAGGGAATGCGTTTTTGGCTTCCTAGTCTTGAAAAAAAAGGAGACTG
521 ATGTCTTGTATCCTAATGAAGGGAATGCGTTTTTGGCTTCCCAATCTTGAAAAAAAAGGAGACTA
* *
27018 CTACGAGAATCGATGCTCGTCATATTTAAGGTATGAACTTTCA-T-GG-TA-AAAAAAAGATTTC
586 TTATGAGAATCGATGCTCGTCATATTTAAGG-ATGAACTTTCATTAGGATAGAAAAAAAGATTTC
* * *
27079 CATGCAAAAGAAAAGCATTAATATCATTTATCCTAATGAGGAGAATGTGTTTATAATGCCAAATC
650 CATGCAAAAGAAAATCATTAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATC
** * *
27144 ATGAAATAAATGAAGATCATTACTAGAATCTATGTTTGTCTCACTTGAGGCATGAACTTAGACTT
715 ACAAAATAAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTT
* *
27209 TACGAAAATTGGTGAG-AAAATGCCTTTCTTGCAAACCCAAAGCATCAATATTGTGTATCCTAAT
780 TACGAAAATTGGTGGGAAAAAAGCCTTTCTTGCAAACCCAAAGCATCAATATTGTGTATCCTAAT
* * * * *
27273 GAGAAGACTATGCTTATAGTGCCTAATCTTGGAAAGAATGGGGATCATTATGACTATTCAAGCTT
845 GAGAAGACTATGTTTATGGTGCCTAATCTTGAAAAGAATGGGGATCAGTATGACTATTCAAGTTT
27338 GTCTTATTTAAGAGACAAACTTTGATTCTATCA
910 GTCTTATTTAAGAGACAAACTTTGATTCTATCA
* *
27371 AAAACAGTGGAAA-AAAAACTTTTCTTGTGATCCCAAAGCATCAATGTCTTGTATACTAATGAAG
1 AAAACAGTGGAAAGAAAAACTTTTCTTGCGATCCCAAAGCATCAATGTCTTGTATCCTAATGAAG
* * * *
27435 GGAATGTGTTTTGGCTTACTAATTTTAAAAAGAATGGAGACTGTTACAAGAATTGATGCTTGTCT
66 GGAATGTGTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTGTTACAAGAATTGATGCTTGTCT
* * *
27500 TATTTAAGGGATGAACTTTAATTTTAAGGAAAATAAGGCAAAAAAAAGATTTCCATACAAAAGAA
131 TATTTAAGGGATAAACTTTGATTTTAAGGAAAATAAGGCAAAAAAAAGATTTCCATGCAAAAGAA
* * *
27565 AATCATCAATATCATTTATCCTAATGAGGTGAATTTGCTTT-TAGCGCCTAATCACAAAATGAAT
196 AATCATCAATATCATTTATCCTAATGAGGAGAATATG-TTTATAGTGCCTAATCACAAAATGAAT
* * * * * ** * *
27629 GAAGATCTTTACTAGAATTCGTGTTTGTCTTATTTGTGGTGCGAACATAGACTTTTCAAAAATTG
260 GAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTG
* * *
27694 GTGGGAAAAAAGCCTTTCTTGCAAAACCAAAGCATCAATATGATGCATCCTAAAGAAAAAGCTAT
325 GTGGGAAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATGATGTATCCTAATGAAAAAGCTAT
* * *
27759 GTTTATGGTGCCTAATCCTGAAAAGAACGGGGATTAGTATGAGTATTCATGTTTGCCGTATTGAG
390 GTTTATGGTGCCTAATCCTGAAAAGAACGGGGATTAGTATGAGTATTCATGTTTGTCTTATTGAA
** ** *
27824 GAGACAAACTTTGATTCTAAAAAAAACGGTGGAAAGAAAAGCACTTCTTACGACACCAACACATC
455 GAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAACACATC
* *
27889 AATGTCTTGTATCCTAATGAAGGGAATGCGTTTTTGGCTTCCTAGTCTTGAAAAAAAAGGAGACT
520 AATGTCTTGTATCCTAATGAAGGGAATGCGTTTTTGGCTTCCCAATCTTGAAAAAAAAGGAGACT
** *
27954 GCTACGAGAATCGATGCTCGTCATATTTAAGGTATGAACTTTCA-T-GG-TA-AAAAAAAGATTT
585 ATTATGAGAATCGATGCTCGTCATATTTAAGG-ATGAACTTTCATTAGGATAGAAAAAAAGATTT
* * *
28015 CCATGCAAAAGAAAAGCATTAATATCATTTATCCTAATGAGGAGAATGTGTTTATAATGCCAAAT
649 CCATGCAAAAGAAAATCATTAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAAT
** * *
28080 CATGAAATAAATGAAGATCATTACTAGAATCTATGTTTGTCTCACTTGAGGCATGAACTTAGACT
714 CACAAAATAAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACT
* *
28145 TTACGAAAATTGGTGAG-AAAATGCCTTTCTTGCAAACCCAAAGCATCAATATTGTGTATCCTAA
779 TTACGAAAATTGGTGGGAAAAAAGCCTTTCTTGCAAACCCAAAGCATCAATATTGTGTATCCTAA
* * * * *
28209 TGAGAAGACTATGCTTATAGTGCCTAATCTTGGAAAGAATGGGGATCATTATGACTATTCAAGCT
844 TGAGAAGACTATGTTTATGGTGCCTAATCTTGAAAAGAATGGGGATCAGTATGACTATTCAAGTT
28274 TGTCTTATTTAAGAGACAAACTTTGATTCTATCA
909 TGTCTTATTTAAGAGACAAACTTTGATTCTATCA
* * * * * *
28308 AAAACAGTGGAAAGAAAAGCTTTTGTTGCGATCCCAAAGCATCAACGTCATGCATCCTAATGAAA
1 AAAACAGTGGAAAGAAAAACTTTTCTTGCGATCCCAAAGCATCAATGTCTTGTATCCTAATGAAG
28373 GGAATGTGTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTAG-TAC---AA--G--G---G-C
66 GGAATGTGTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACT-GTTACAAGAATTGATGCTTGTC
* * *
28426 -----T-----AT--ACTCTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTT-CATGGAAAAGA
130 TTATTTAAGGGATAAACTTTGATTTTAAGGAAAATAAGGCAAAAAAAAGATTTCCATGCAAAAGA
* * * * * * *
28478 AAATCCTTAACATCATTTATCCTAATAAGAAAAAAATGTTTATAGTGCCTAATCACAAAATGAAT
195 AAATCATCAATATCATTTATCCTAATGAGGAGAATATGTTTATAGTGCCTAATCACAAAATGAAT
* * *
28543 GAAGATCATTACTATAATCCATGTTTGTCTCATTTAAGGCATGAACTTAGACTTTA-AGAAAATT
260 GAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACA-AAAATT
** * * *
28607 GGT-GGAAAAATCCCTTTCTTGCG-AACCGAAAGCATCAATATCATGTACCCTAATG-AGAAGAC
324 GGTGGGAAAAAAGCCTTTCTTGCGAAACC-AAAGCATCAATATGATGTATCCTAATGAAAAAG-C
* * * * * * * *
28669 TAAGTTTATGGTGCCTAGTCATGAAAAGAATGGGGATCAGTAGGACTATTCAAGTTTGTCTTATT
387 TATGTTTATGGTGCCTAATCCTGAAAAGAACGGGGATTAGTATGAGTATTCATGTTTGTCTTATT
* * * * * *
28734 CAAGAGACAAACTTTGTTTCTATCAAAATCGATGGAAAGAAAAGCTTTTCTTGCAACACCCAA-G
452 GAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACA-CCAACA
* * * * ** *
28798 CTTCATTGTCTTGTATCCTAATGAAGGAAATGC-ATTTTGGCTTCCCAATCTTGAAAGGAATGGA
516 CATCAATGTCTTGTATCCTAATGAAGGGAATGCGTTTTTGGCTTCCCAATCTTGAAAAAAAAGGA
* * ** * * *
28862 GACTATTATGAGAATCGATACTTGTTTTTTTTAAAGGATCAACTTTGATTTTAAGGAAAATATGG
581 GACTATTATGAGAATCGATGCTCGTCATATTT-AAGGATGAACTTTCA--TT-AGG---ATA--G
* * * * * * * *
28927 TAAAGAAAAGATTTTC-TCGTAAAATAAAAAATCATCAATACCGTTTATTCTTAAAG-GGAGAAT
637 -AAA-AAAAGATTTCCAT-G-CAAA-AGAAAATCATTAATATCATTTA-TCCTAATGAGGAGAAT
* * * * * *
28990 GTGTTTATAGTGCCTAATTACAAAATGAATGATGACCTTTACTATAATCCATGTTTGTCTCATTT
696 GTGTTTATAGTGCCTAATCACAAAATAAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTT
* * *
29055 GAGGCACGAACTTAGACTTTACAAAAATTAGTGGGAAAAAAGCCTTTCTTGCGAAA-CCAAAGCA
761 GAGGCATGAACTTAGACTTTACGAAAATTGGTGGGAAAAAAGCCTTTCTTGC-AAACCCAAAGCA
* * **
29119 TCAATA-TGATG-AACGCCAATGAGAAGACTATGTTTATGGTGCCTAATCCTT-AAAAGAATCAG
825 TCAATATTG-TGTATC-CTAATGAGAAGACTATGTTTATGGTGCCTAAT-CTTGAAAAGAATGGG
* * * * * * * *
29181 GATTAGCATGAGTATTTATGTTTGTCTTATTTAAGAAACAAACTTTAATTCTCTCA
887 GATCAGTATGACTATTCAAGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCA
* * * * *
29237 AAAAC-GATGGAAAGCAAAGCTTTTCTTGCGA-CACCAAAACGTCAATGTCATGTATCCTAATGA
1 AAAACAG-TGGAAAGAAAAACTTTTCTTGCGATC-CCAAAGCATCAATGTCTTGTATCCTAATGA
*
29300 AGGGAATGTGTTTTAGCTTCCCA
64 AGGGAATGTGTTTTGGCTTCCCA
29323 GTTCAAAGGA
Statistics
Matches: 4162, Mismatches: 539, Indels: 205
0.85 0.11 0.04
Matches are distributed among these distances:
912 66 0.02
913 181 0.04
914 117 0.03
915 36 0.01
917 4 0.00
921 2 0.00
922 1 0.00
925 4 0.00
926 11 0.00
927 4 0.00
928 115 0.03
929 194 0.05
930 6 0.00
931 1 0.00
933 1 0.00
935 6 0.00
936 62 0.01
937 1140 0.27
938 93 0.02
939 1 0.00
941 2 0.00
945 8 0.00
946 312 0.07
947 307 0.07
948 179 0.04
949 118 0.03
950 92 0.02
951 116 0.03
952 69 0.02
953 302 0.07
954 27 0.01
955 265 0.06
956 133 0.03
957 175 0.04
958 12 0.00
ACGTcount: A:0.36, C:0.15, G:0.18, T:0.31
Consensus pattern (942 bp):
AAAACAGTGGAAAGAAAAACTTTTCTTGCGATCCCAAAGCATCAATGTCTTGTATCCTAATGAAG
GGAATGTGTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTGTTACAAGAATTGATGCTTGTCT
TATTTAAGGGATAAACTTTGATTTTAAGGAAAATAAGGCAAAAAAAAGATTTCCATGCAAAAGAA
AATCATCAATATCATTTATCCTAATGAGGAGAATATGTTTATAGTGCCTAATCACAAAATGAATG
AAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGG
TGGGAAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATGATGTATCCTAATGAAAAAGCTATG
TTTATGGTGCCTAATCCTGAAAAGAACGGGGATTAGTATGAGTATTCATGTTTGTCTTATTGAAG
AGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAACACATCA
ATGTCTTGTATCCTAATGAAGGGAATGCGTTTTTGGCTTCCCAATCTTGAAAAAAAAGGAGACTA
TTATGAGAATCGATGCTCGTCATATTTAAGGATGAACTTTCATTAGGATAGAAAAAAAGATTTCC
ATGCAAAAGAAAATCATTAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCA
CAAAATAAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTT
ACGAAAATTGGTGGGAAAAAAGCCTTTCTTGCAAACCCAAAGCATCAATATTGTGTATCCTAATG
AGAAGACTATGTTTATGGTGCCTAATCTTGAAAAGAATGGGGATCAGTATGACTATTCAAGTTTG
TCTTATTTAAGAGACAAACTTTGATTCTATCA
Found at i:37908 original size:1 final size:1
Alignment explanation
Indices: 37904--37958 Score: 56
Period size: 1 Copynumber: 55.0 Consensus size: 1
37894 CCACCTTTTT
** * * * *
37904 AAAAAAAAAAACCAAAAAAAAACAAAAACAAAAAAAAAAAAAAAAGAAAAGAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
37959 TAACCTACTT
Statistics
Matches: 44, Mismatches: 10, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
1 44 1.00
ACGTcount: A:0.89, C:0.07, G:0.04, T:0.00
Consensus pattern (1 bp):
A
Found at i:37947 original size:16 final size:16
Alignment explanation
Indices: 37904--37947 Score: 70
Period size: 16 Copynumber: 2.8 Consensus size: 16
37894 CCACCTTTTT
*
37904 AAAAAAAAAAACCAAA
1 AAAAAAAAAAAACAAA
*
37920 AAAAAACAAAAACAAA
1 AAAAAAAAAAAACAAA
37936 AAAAAAAAAAAA
1 AAAAAAAAAAAA
37948 AGAAAAGAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 25 1.00
ACGTcount: A:0.91, C:0.09, G:0.00, T:0.00
Consensus pattern (16 bp):
AAAAAAAAAAAACAAA
Found at i:37947 original size:17 final size:17
Alignment explanation
Indices: 37904--37958 Score: 74
Period size: 17 Copynumber: 3.2 Consensus size: 17
37894 CCACCTTTTT
*
37904 AAAAAAAAAAACCAAAA
1 AAAAAAAAAAACAAAAA
*
37921 AAAAACAAAAACAAAAA
1 AAAAAAAAAAACAAAAA
*
37938 AAAAAAAAAAAGAAAAGA
1 AAAAAAAAAAACAAAA-A
37956 AAA
1 AAA
37959 TAACCTACTT
Statistics
Matches: 33, Mismatches: 4, Indels: 1
0.87 0.11 0.03
Matches are distributed among these distances:
17 29 0.88
18 4 0.12
ACGTcount: A:0.89, C:0.07, G:0.04, T:0.00
Consensus pattern (17 bp):
AAAAAAAAAAACAAAAA
Found at i:39240 original size:122 final size:122
Alignment explanation
Indices: 39030--39331 Score: 379
Period size: 122 Copynumber: 2.5 Consensus size: 122
39020 GAGCAGGACG
* * * * *
39030 CCTTTCAAAGCCCACACAAGTTGGTGGCA-TTTTCCAGTCCTCAAAGAGCAG-GA----TGCCTT
1 CCTTTTAAAGCCCACACAAGTTGGTGGCACTTTTCTAGTCCTCAAAGAGCAGACACCTTTTCCTA
*
39089 TTAAAGCCCACACAAGCTGGTGGCACCTT-CAGTCCTCAAAGAGCAAGATGCCTTTT
66 TTAAAGCCCACACAAGCTGGTGGCACCTTCCAGTCCTCAAAGAGCAAGACGCCTTTT
* *
39145 CCTTTTAAAGACCACACAAGTTGGTGGCACTTTTCTAGTCCTCAAAGTGCTAGACACCTTTTCCT
1 CCTTTTAAAGCCCACACAAGTTGGTGGCACTTTTCTAGTCCTCAAAGAGC-AGACACCTTTTCCT
* * * *
39210 ATTAAAGCCCACACAAGTTGGTGGCACCTTCCAGTCCTCACAGAGTAGGACGCCTTTT
65 ATTAAAGCCCACACAAGCTGGTGGCACCTTCCAGTCCTCAAAGAGCAAGACGCCTTTT
** *
39268 -CTTTTCAAAGCCCACATGAGTTGGTGGCACTTTT-TAGTCCTCAAAGAGCAGAACGCCTTTTCC
1 CCTTTT-AAAGCCCACACAAGTTGGTGGCACTTTTCTAGTCCTCAAAGAGCAG-ACACCTTTTCC
39331 T
64 T
39332 TCTCTCTTTT
Statistics
Matches: 160, Mismatches: 17, Indels: 13
0.84 0.09 0.07
Matches are distributed among these distances:
115 27 0.17
116 18 0.11
117 2 0.01
118 1 0.01
121 2 0.01
122 62 0.39
123 48 0.30
ACGTcount: A:0.25, C:0.28, G:0.19, T:0.27
Consensus pattern (122 bp):
CCTTTTAAAGCCCACACAAGTTGGTGGCACTTTTCTAGTCCTCAAAGAGCAGACACCTTTTCCTA
TTAAAGCCCACACAAGCTGGTGGCACCTTCCAGTCCTCAAAGAGCAAGACGCCTTTT
Found at i:39278 original size:61 final size:60
Alignment explanation
Indices: 39010--39329 Score: 340
Period size: 61 Copynumber: 5.5 Consensus size: 60
39000 TTCACCCTTT
*
39010 AGTCCTCAAAGAGCAGGACGCC-TTTC----AAAGCCCACACAAGTTGGTGGCATTTTCC
1 AGTCCTCAAAGAGCAGGACGCCTTTTCTTTTAAAGCCCACACAAGTTGGTGGCACTTTCC
* * *
39065 AGTCCTCAAAGAGCAGGATG-C----CTTTTAAAGCCCACACAAGCTGGTGGCACCTT-C
1 AGTCCTCAAAGAGCAGGACGCCTTTTCTTTTAAAGCCCACACAAGTTGGTGGCACTTTCC
* * * *
39119 AGTCCTCAAAGAGCAAGATGCCTTTTCCTTTTAAAGACCACACAAGTTGGTGGCACTTTTCT
1 AGTCCTCAAAGAGCAGGACGCCTTTT-CTTTTAAAGCCCACACAAGTTGGTGGCAC-TTTCC
* * * *
39181 AGTCCTCAAAGTGCTA-GACACCTTTTCCTATTAAAGCCCACACAAGTTGGTGGCACCTTCC
1 AGTCCTCAAAGAGC-AGGACGCCTTTT-CTTTTAAAGCCCACACAAGTTGGTGGCACTTTCC
* * ** **
39242 AGTCCTCACAGAGTAGGACGCCTTTTCTTTTCAAAGCCCACATGAGTTGGTGGCACTTTTT
1 AGTCCTCAAAGAGCAGGACGCCTTTTCTTTT-AAAGCCCACACAAGTTGGTGGCACTTTCC
*
39303 AGTCCTCAAAGAGCAGAACGCCTTTTC
1 AGTCCTCAAAGAGCAGGACGCCTTTTC
39330 CTTCTCTCTT
Statistics
Matches: 221, Mismatches: 29, Indels: 24
0.81 0.11 0.09
Matches are distributed among these distances:
51 1 0.00
54 21 0.10
55 44 0.20
60 32 0.14
61 73 0.33
62 49 0.22
63 1 0.00
ACGTcount: A:0.26, C:0.28, G:0.20, T:0.26
Consensus pattern (60 bp):
AGTCCTCAAAGAGCAGGACGCCTTTTCTTTTAAAGCCCACACAAGTTGGTGGCACTTTCC
Found at i:39436 original size:79 final size:82
Alignment explanation
Indices: 39305--39491 Score: 231
Period size: 79 Copynumber: 2.3 Consensus size: 82
39295 CACTTTTTAG
* * *
39305 TCCTCAAAGAGCAGAACGCCTTTTCCTTCTCTCTTTTGTCCTCAAAGGGCAGGAC-ACATTTCAT
1 TCCTCAAAGAGCAGAACACCTTTT-CTTCTCTCCTTTGTCCTCAAAGAGCAGGACGA-ATTTCAT
39369 TTCTTTCTTTTCCTTTTTT
64 TTCTTTCTTTTCCTTTTTT
*
39388 TCCTCAAAGAGCAGAATACCTTTT-TT-T-TCCTTTGTCCTCAAAGAGCAGGACGAATTTCATTT
1 TCCTCAAAGAGCAGAACACCTTTTCTTCTCTCCTTTGTCCTCAAAGAGCAGGACGAATTTCATTT
**
39450 CTTTCTTTTCCCTTCTAGT
66 CTTTCTTTT-CCTT-TTTT
*
39469 T-CTCAAAGAGCAGGACACGCTTT
1 TCCTCAAAGAGCAGAACAC-CTTT
39492 ATTATCCTTT
Statistics
Matches: 92, Mismatches: 8, Indels: 10
0.84 0.07 0.09
Matches are distributed among these distances:
79 40 0.43
80 21 0.23
81 9 0.10
83 22 0.24
ACGTcount: A:0.21, C:0.26, G:0.13, T:0.39
Consensus pattern (82 bp):
TCCTCAAAGAGCAGAACACCTTTTCTTCTCTCCTTTGTCCTCAAAGAGCAGGACGAATTTCATTT
CTTTCTTTTCCTTTTTT
Found at i:41917 original size:47 final size:47
Alignment explanation
Indices: 41848--41989 Score: 248
Period size: 47 Copynumber: 3.0 Consensus size: 47
41838 CGAATGTCCG
41848 TAGCATGAGTTCGATCTAGTGGAGAAACCAAAACGTTAAACACCTCC
1 TAGCATGAGTTCGATCTAGTGGAGAAACCAAAACGTTAAACACCTCC
* *
41895 TAGCAAGAGTTCGATCTAGTGGAGAAACCAAAATGTTAAACACCTCC
1 TAGCATGAGTTCGATCTAGTGGAGAAACCAAAACGTTAAACACCTCC
* *
41942 TAGCATGAGCTCGAGCTAGTGGAGAAACCAAAACGTTAAACACCTCC
1 TAGCATGAGTTCGATCTAGTGGAGAAACCAAAACGTTAAACACCTCC
41989 T
1 T
41990 CTGTTTTGGT
Statistics
Matches: 89, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
47 89 1.00
ACGTcount: A:0.37, C:0.23, G:0.20, T:0.20
Consensus pattern (47 bp):
TAGCATGAGTTCGATCTAGTGGAGAAACCAAAACGTTAAACACCTCC
Found at i:42754 original size:50 final size:51
Alignment explanation
Indices: 42684--42807 Score: 153
Period size: 50 Copynumber: 2.5 Consensus size: 51
42674 TAAATTTCTA
* * * * *
42684 GATTTTTCATCTT-GGAGATACTTTAACCTCAGCTTTATTTCTAAAATATT
1 GATTTTTCATATTCGGGGATACTTTAACCTCAGCTTTATTTCCAAAACATC
* *
42734 GATTTTTCAT-TTCGGGGATACTCTAACCTCAGTTTTATTTCCAAAACATC
1 GATTTTTCATATTCGGGGATACTTTAACCTCAGCTTTATTTCCAAAACATC
* *
42784 AATTTTTCATAATCGGGGATACTT
1 GATTTTTCATATTCGGGGATACTT
42808 CAATCCTGTT
Statistics
Matches: 63, Mismatches: 9, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
49 2 0.03
50 50 0.79
51 11 0.17
ACGTcount: A:0.27, C:0.18, G:0.12, T:0.43
Consensus pattern (51 bp):
GATTTTTCATATTCGGGGATACTTTAACCTCAGCTTTATTTCCAAAACATC
Found at i:44960 original size:466 final size:464
Alignment explanation
Indices: 44054--45370 Score: 1448
Period size: 466 Copynumber: 2.8 Consensus size: 464
44044 TTGCGACATT
* * * * * *
44054 AATATCTTTTATCCTATTGTGGATAATGTTTTTATAGTGCTTAATCACAAAATGAATAAAGATCA
1 AATATCATTTATCCTAATGAGGAGAATGTTTTTATAGTGCCTAATCACAAAATGAATGAAGATCA
* * * * * *
44119 TTAGTTGAATCCACGTTTTTCTCATTTGAGACACAAACTTAGACTTTACAAAAATTGGTGGGAAA
66 TTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGT-GGAAA
** * * *
44184 AAAACCTTT-ATTGCGAAGCCAAAGCATCAGTCTGATGTATCCTAATGAGAAGACTATGTTTATG
130 AATGCCTTTCA-TGCGAAACCAAAGCATCAATATGATGTATCCTAATGAGAAGACTATGTTTATG
* * ** * * * *
44248 GTTCTTAAT-CT-TGAAAAGAACGAGGATTAGTATGAGTATTCATCTCTGTCATATTTAAGAGCC
194 GTGCCTAATCCTAAAAAAAGAATGGGGATTACTATGAGTATTCA-----G---------AGAGAC
* ** ** *
44311 AAACTTTGATTCTATCAAAAACAAG-GGAAAGAAAAGCTTTTCTTGTGACACCAAAACATCAATG
245 AAACTTTGATTCTTTCAAAAA-TGGTGGAAAGAAAAGCTTTTCTTGCAACACCAAAGCATCAATG
* *
44375 TCATGTATCCTAAAGAAGGGAATGTGTTTTTGGCTTCCTAGTCTTGAAAAGAAAGAAGACTATTA
309 TCATGTATCCTAATGAAGGGAATGTGTTTTTGGCTTCCTAGTCTTGAAAAGAAAGAAGACTAATA
* * * * *
44440 CGAGGATAGATGCTCATCATATTTAAGGTATGAACTTTGATTTAAAGGAAAATAGGGTAAAGAAA
374 CGAGAATAGATGCTCATCATACTTAAGGTATGAACATTGATTTAAAGGAAAATAGAGCAAAGAAA
*
44505 AGATTTCCATGCAGAAA-AAAATCATC
439 AGATTTCCATGCA-AAATAAAAGCATC
* * *
44531 AATATCATTTATCATAATGAGGAGAATGTTTTTATAGTTCCTAATCACACAATGAATGAAGATCA
1 AATATCATTTATCCTAATGAGGAGAATGTTTTTATAGTGCCTAATCACAAAATGAATGAAGATCA
* ** * *
44596 TCACTAGAATCCATGTTTGTCTCATTTGAGGCTTGAAGTTAGACTTTACGAAAATTGGTAGGAAA
66 TTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGT-GGAAA
*
44661 AATGCCTTTCATGCGAACCCAAAGCATCAATATTG-TGTATCCTAAAT-AGAAGACTATGTTTAT
130 AATGCCTTTCATGCGAAACCAAAGCATCAATA-TGATGTATCCT-AATGAGAAGACTATGTTTAT
* *
44724 GGTGCCTAATCCTCAAAAAAAGAATGGGGATTACTATGAGTATTCAGGGAGACAAACATTGATTC
193 GGTGCCTAATCCT-AAAAAAAGAATGGGGATTACTATGAGTATTCAGAGAGACAAACTTTGATTC
*
44789 TTTTAAAAATGGTGGAAAGAAAAGCTTTTCTTGCAACACCAAAGCATCAATGTCATGTATCCTAA
257 TTTCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCAACACCAAAGCATCAATGTCATGTATCCTAA
* ** * * *
44854 TGAAGGGAATGTGTTTTTGGCTTCCCAGTCTTGAAAAGATTGGAGACTAATACGAGAATCGATTC
322 TGAAGGGAATGTGTTTTTGGCTTCCTAGTCTTGAAAAGAAAGAAGACTAATACGAGAATAGATGC
** * *
44919 TTGTCTTACTTAAGGTATGAACATTGATTTTAAGGAAAATAGAGCAAAGAAAAGATTTCCATGCA
387 TCATCATACTTAAGGTATGAACATTGATTTAAAGGAAAATAGAGCAAAGAAAAGATTTCCATGCA
44984 AAATAAAAGCATC
452 AAATAAAAGCATC
* * ** * * *
44997 AATATCATTTATCCTAATGAGAAGCATGCGTTTATAGTGCCTAATCACAAAATGAATGATGACCT
1 AATATCATTTATCCTAATGAGGAGAATGTTTTTATAGTGCCTAATCACAAAATGAATGAAGATCA
* * * * *
45062 TTACAAGAATCCATGTTTGTCTTATTTGAGGCACGAACTTAGACTTTGCAAAAATTAGTGGGAAA
66 TTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGAAAA
* * * *
45127 ATAGCCTTTCCTTCGAAACCAAAGCATCAATATGATGTATCCTAATGAGTAGACTATGTTTATGC
131 AT-GCCTTTCATGCGAAACCAAAGCATCAATATGATGTATCCTAATGAGAAGACTATGTTTATGG
* * *
45192 TGCCTAATCCT--AAAACGAACGGGGATTAGTATGAGTATTCATATTTGTCTTATTTAAGAGACA
195 TGCCTAATCCTAAAAAAAGAATGGGGATTACTATGAGTATTC--A---G---------AGAGACA
* * * * * *
45255 AACTTTGATTCGTTCGAAAATGATGGAAGGAAAAGCTTTTCTTACAACACCAAAGCTTCAATGTC
246 AACTTTGATTCTTTCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCAACACCAAAGCATCAATGTC
*
45320 ATGCATCCTAATGAAGGGAATGTG-TTTTGGCTTCCTAGTCTTGAAAAGAAA
311 ATGTATCCTAATGAAGGGAATGTGTTTTTGGCTTCCTAGTCTTGAAAAGAAA
45371 ATCATTAATA
Statistics
Matches: 713, Mismatches: 102, Indels: 51
0.82 0.12 0.06
Matches are distributed among these distances:
463 26 0.04
465 17 0.02
466 358 0.50
468 1 0.00
475 1 0.00
476 24 0.03
477 252 0.35
478 8 0.01
480 26 0.04
ACGTcount: A:0.36, C:0.15, G:0.18, T:0.31
Consensus pattern (464 bp):
AATATCATTTATCCTAATGAGGAGAATGTTTTTATAGTGCCTAATCACAAAATGAATGAAGATCA
TTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGAAAA
ATGCCTTTCATGCGAAACCAAAGCATCAATATGATGTATCCTAATGAGAAGACTATGTTTATGGT
GCCTAATCCTAAAAAAAGAATGGGGATTACTATGAGTATTCAGAGAGACAAACTTTGATTCTTTC
AAAAATGGTGGAAAGAAAAGCTTTTCTTGCAACACCAAAGCATCAATGTCATGTATCCTAATGAA
GGGAATGTGTTTTTGGCTTCCTAGTCTTGAAAAGAAAGAAGACTAATACGAGAATAGATGCTCAT
CATACTTAAGGTATGAACATTGATTTAAAGGAAAATAGAGCAAAGAAAAGATTTCCATGCAAAAT
AAAAGCATC
Found at i:46054 original size:158 final size:155
Alignment explanation
Indices: 45405--46043 Score: 456
Period size: 158 Copynumber: 4.0 Consensus size: 155
45395 AAGGAAAATG
* * * ** * *
45405 TGTTTATAGTGCCTAATCACAAAATGGATTAAGATCATTACTAGAATCCATGTTTATCTCATTTG
1 TGTTTATAGTGCCTAATCACAAAA-GAATGAAGATCATTACTAGAATCTATGTTTGCCTTATTTA
* * * *
45470 AGGCATGAACTTAGACTTTACGAAAATTGGTGGGAAAAATGCCTTTCTTGCAAAACCAAAGCATC
65 AGGCATAAACTTAGACTTTA-AAAAATTGGTGGAAAAAAAGCCTTTCTTGCAAAACCAAAGCATC
45535 AATATCGTGTATCCTAATGAGAAGACTA
129 AATATCGTGTATCCTAATGAGAAGA-TA
* ** ** * * *
45563 TGTTTATGGTGCCTAATCTTGAAAAGAATGGGGATCAGTA-TAGGTATTCT-TGTTTGCCCTATT
1 TGTTTATAGTGCCTAATC-ACAAAAGAATGAAGATCATTACTA-G-AATCTATGTTTGCCTTATT
* * * ** *
45626 TAAGAG-ACAAACTTTGATTCTTTAAAAAA-TGGTAGAAAAAAAGGTTTTCTTGCAACACCAAAG
63 TAAG-GCATAAACTTAGA--CTTTAAAAAATTGGTGGAAAAAAAGCCTTTCTTGCAAAACCAAAG
*
45689 CATCAATGTCGTGTATCCT-ATGAAGGAA-ATA
125 CATCAATATCGTGTATCCTAATG-A-GAAGATA
* * * ** * * * * *
45720 TGTTTTTGGCTTTCC-AGCCTCGAAAAGAAT-AGAGA-CTATTACGAGAAT-GATGGTTGTCTTA
1 TGTTTATAG--TGCCTAATCAC-AAAAGAATGA-AGATC-ATTACTAGAATCTATGTTTGCCTTA
* * * * ** * **
45781 TTTAAGGCATGAACTTTGAGTTTAAGGAAAATTGG-GTAAAAAAAAGATTTTTTTGCAAAAAAAA
61 TTTAAGGCATAAACTTAGACTTTAA--AAAATTGGTG-GAAAAAAAGCCTTTCTTGCAAAACCAA
* * * * * ** * *
45845 ATCATCAAAATCATTTATTCTAAAAAGTAGAATG
123 AGCATCAATATCGTGTATCCTAATGAGAAG-ATA
* *
45879 TGTTTATAGTGCCTAATCACAAAATTAATGAAGATCATTACTAGAATCTATGTTTGCCTTATTTG
1 TGTTTATAGTGCCTAATCACAAAA-GAATGAAGATCATTACTAGAATCTATGTTTGCCTTATTTA
*
45944 AGGCATAAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGCAAAACCAAAGCATC
65 AGGCATAAACTTAGACTTTA-AAAAATTGGTGGAAAAAAAGCCTTTCTTGCAAAACCAAAGCATC
*
46009 AATAT-GATGTATCCTAATGAGAACAGTA
129 AATATCG-TGTATCCTAATGAGAAGA-TA
46037 TGTTTAT
1 TGTTTAT
46044 GCTGCGTAAT
Statistics
Matches: 357, Mismatches: 92, Indels: 64
0.70 0.18 0.12
Matches are distributed among these distances:
155 5 0.01
156 1 0.00
157 56 0.16
158 227 0.64
159 62 0.17
160 6 0.02
ACGTcount: A:0.36, C:0.14, G:0.18, T:0.32
Consensus pattern (155 bp):
TGTTTATAGTGCCTAATCACAAAAGAATGAAGATCATTACTAGAATCTATGTTTGCCTTATTTAA
GGCATAAACTTAGACTTTAAAAAATTGGTGGAAAAAAAGCCTTTCTTGCAAAACCAAAGCATCAA
TATCGTGTATCCTAATGAGAAGATA
Found at i:46187 original size:854 final size:845
Alignment explanation
Indices: 44522--46223 Score: 2258
Period size: 854 Copynumber: 2.0 Consensus size: 845
44512 CATGCAGAAA
* * * * *
44522 AAAATCATCAATATCATTTATCATAATGAGGAGAATGTTTTTATAGTTCCTAATCACACAATGAA
1 AAAATCATCAATATCATTTATCATAATAAGGAAAATGTGTTTATAGTGCCTAATCACAAAATGAA
* * *
44587 TGAAGATCATCACTAGAATCCATGTTTGTCTCATTTGAGGCTTGAAGTTAGACTTTACGAAAATT
66 TGAAGATCATCACTAGAATCCATGTTTATCTCATTTGAGGCATGAACTTAGACTTTACGAAAATT
* * *
44652 GGTAGGAAAAATGCCTTTCATGCGAACCCAAAGCATCAATATTGTGTATCCTAAATAGAAGACTA
131 GGTAGGAAAAATGCCTTTCATGCAAAACCAAAGCATCAATATCGTGTATCCTAAATAGAAGACTA
*
44717 TGTTTATGGTGCCTAATCCTCAAAAAAAGAATGGGGATTACTATGAGTATTCAGGGAGACAAACA
196 TGTTTATGGTGCCTAATCCT-AAAAAAAGAATGGGGATCACTATGAGTATTCAGGGAGACAAACA
* *
44782 TTGATTCTTTTAAAAATGGTGGAAAGAAAAGCTTTTCTTGCAACACCAAAGCATCAATGTCATGT
260 TTGATTCTTTAAAAAATGGTAGAAAGAAAAGCTTTTCTTGCAACACCAAAGCATCAATGTCATGT
* * * * * *
44847 ATCCTAATGAAGGGAATGTGTTTTTGGCTTCCCAGTCTTGAAAAGATTGGAGACTAATACGAGAA
325 ATCCTAATGAAGGAAATATGTTTTTGGCTTCCCAGCCTCGAAAAGAATAGAGACTAATACGAGAA
* * * *
44912 TCGATTCTTGTCTTACTTAAGGTATGAACATTGATTTTAAGGAAAATAGAGCAAAGAAAAGATTT
390 TCGATGCTTGTCTTACTTAAGGCATGAACATTGAGTTTAAGGAAAATAGAGCAAAAAAAAGATTT
* * ** *
44977 CCATGCAAAATAAAAGCATCAATATCATTTATCCTAATGAGAAGCATGCGTTTATAGTGCCTAAT
455 CCATGCAAAAAAAAAGCATCAAAATCATTTATCCTAAAAAGAAGAATGCGTTTATAGTGCCTAAT
* * * *
45042 CACAAAATGAATGATGACCTTTACAAGAATCCATGTTTGTCTTATTTGAGGCACGAACTTAGACT
520 CACAAAATGAATGAAGACCATTACAAGAATCCATGTTTGCCTTATTTGAGGCACAAACTTAGACT
* * *
45107 TTGCAAAAATTAGTGGGAAAATAGCCTTTCCTTCGAAACCAAAGCATCAATATGATGTATCCTAA
585 TTACAAAAATTAGTGGGAAAAAAGCCTTTCCTTCAAAACCAAAGCATCAATATGATGTATCCTAA
* * *
45172 TGAGTAGACTATGTTTATGCTGCCTAATCCTAAAACGAACGGGGATTAGTATGAGTATTCATATT
650 TGAGAACACTATGTTTATGCTGCCTAATCCTAAAACGAACGGGGATTAGTAGGAGTATTCATATT
* * * *
45237 TGTCTTATTTAAGAGACAAACTTTGATTCGTTCGAAAATGATGGAAGGAAAAGCTTTTCTTACAA
715 TGTCTTATTTAAGAGACAAACTTTGATTCGATCAAAAATGATGAAAAGAAAAGCTTTTCTTACAA
* * * *
45302 CACCAAAGCTTCAATGTCATGCATCCTAATGAAGGGAATGTGTTTTGGCTTCCTAGTCTTGAAAA
780 CACCAAAGATTCAATGTCATGAATCCTAATGAAGGGAATGTGTTTTGGCTTCCCAATCTTGAAAA
45367 G
845 G
* * * *
45368 AAAATCATTAATATCATTTATCCTACTAAGGAAAATGTGTTTATAGTGCCTAATCACAAAATGGA
1 AAAATCATCAATATCATTTATCATAATAAGGAAAATGTGTTTATAGTGCCTAATCACAAAATGAA
* *
45433 TTAAGATCATTACTAGAATCCATGTTTATCTCATTTGAGGCATGAACTTAGACTTTACGAAAATT
66 TGAAGATCATCACTAGAATCCATGTTTATCTCATTTGAGGCATGAACTTAGACTTTACGAAAATT
* *
45498 GGTGGGAAAAATGCCTTTCTTGCAAAACCAAAGCATCAATATCGTGTATCCT-AATGAGAAGACT
131 GGTAGGAAAAATGCCTTTCATGCAAAACCAAAGCATCAATATCGTGTATCCTAAAT-AGAAGACT
** * *
45562 ATGTTTATGGTGCCTAAT-CT-TGAAAAGAATGGGGATCAGTAT-AGGTATTCTTGTTTGCCCTA
195 ATGTTTATGGTGCCTAATCCTAAAAAAAGAATGGGGATCACTATGA-GTATTC-AG---G-----
* *
45624 TTTAAGAGACAAACTTTGATTCTTTAAAAAATGGTAGAAA-AAAAGGTTTTCTTGCAACACCAAA
250 -----GAGACAAACATTGATTCTTTAAAAAATGGTAGAAAGAAAAGCTTTTCTTGCAACACCAAA
* *
45688 GCATCAATGTCGTGTATCCT-ATGAAGGAAATATGTTTTTGGCTTTCCAGCCTCGAAAAGAATAG
310 GCATCAATGTCATGTATCCTAATGAAGGAAATATGTTTTTGGCTTCCCAGCCTCGAAAAGAATAG
* * * * * *
45752 AGACTATTACGAGAAT-GATGGTTGTCTTATTTAAGGCATGAACTTTGAGTTTAAGGAAAATTGG
375 AGACTAATACGAGAATCGATGCTTGTCTTACTTAAGGCATGAACATTGAGTTTAAGGAAAATAGA
* *** * * * *
45816 GTAAAAAAAAGATTTTTTTGCAAAAAAAAATCATCAAAATCATTTATTCTAAAAAGTAGAATGTG
440 GCAAAAAAAAGATTTCCATGCAAAAAAAAAGCATCAAAATCATTTATCCTAAAAAGAAGAATGCG
* * * *
45881 TTTATAGTGCCTAATCACAAAATTAATGAAGATCATTACTAGAATCTATGTTTGCCTTATTTGAG
505 TTTATAGTGCCTAATCACAAAATGAATGAAGACCATTACAAGAATCCATGTTTGCCTTATTTGAG
* *
45946 GCATAAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTT-CTTGCAAAACCAAAGCATCA
570 GCACAAACTTAGACTTTACAAAAATTAGTGGGAAAAAAGCCTTTCCTT-CAAAACCAAAGCATCA
* *
46010 ATATGATGTATCCTAATGAGAACAGTATGTTTATGCTGCGTAATCCTGAAAA-GAACGGGGATTA
634 ATATGATGTATCCTAATGAGAACACTATGTTTATGCTGCCTAATCCT-AAAACGAACGGGGATTA
* ** * *
46074 TTAGGAGTATTTGTGTTTGT-TCTATTTAAGAGACAAACTTTGATT-GAATCAAAAATGGTGAAA
698 GTAGGAGTATTCATATTTGTCT-TATTTAAGAGACAAACTTTGATTCG-ATCAAAAATGATGAAA
* * * * * *
46137 AGAAAAGCTTTTCTTGCGACACCCAAGA-TCTAATGTCTTGAATTCTAATGAAGGGAATTTGTTT
761 AGAAAAGCTTTTCTTACAACACCAAAGATTC-AATGTCATGAATCCTAATGAAGGGAATGTGTTT
46201 TGGCTTCCCAATCTTGAAAAG
825 TGGCTTCCCAATCTTGAAAAG
46222 AA
1 AA
46224 TGGAGACTGT
Statistics
Matches: 739, Mismatches: 96, Indels: 34
0.85 0.11 0.04
Matches are distributed among these distances:
842 1 0.00
843 24 0.03
844 1 0.00
845 5 0.01
846 189 0.26
847 1 0.00
853 7 0.01
854 381 0.52
855 56 0.08
856 42 0.06
857 32 0.04
ACGTcount: A:0.36, C:0.15, G:0.18, T:0.32
Consensus pattern (845 bp):
AAAATCATCAATATCATTTATCATAATAAGGAAAATGTGTTTATAGTGCCTAATCACAAAATGAA
TGAAGATCATCACTAGAATCCATGTTTATCTCATTTGAGGCATGAACTTAGACTTTACGAAAATT
GGTAGGAAAAATGCCTTTCATGCAAAACCAAAGCATCAATATCGTGTATCCTAAATAGAAGACTA
TGTTTATGGTGCCTAATCCTAAAAAAAGAATGGGGATCACTATGAGTATTCAGGGAGACAAACAT
TGATTCTTTAAAAAATGGTAGAAAGAAAAGCTTTTCTTGCAACACCAAAGCATCAATGTCATGTA
TCCTAATGAAGGAAATATGTTTTTGGCTTCCCAGCCTCGAAAAGAATAGAGACTAATACGAGAAT
CGATGCTTGTCTTACTTAAGGCATGAACATTGAGTTTAAGGAAAATAGAGCAAAAAAAAGATTTC
CATGCAAAAAAAAAGCATCAAAATCATTTATCCTAAAAAGAAGAATGCGTTTATAGTGCCTAATC
ACAAAATGAATGAAGACCATTACAAGAATCCATGTTTGCCTTATTTGAGGCACAAACTTAGACTT
TACAAAAATTAGTGGGAAAAAAGCCTTTCCTTCAAAACCAAAGCATCAATATGATGTATCCTAAT
GAGAACACTATGTTTATGCTGCCTAATCCTAAAACGAACGGGGATTAGTAGGAGTATTCATATTT
GTCTTATTTAAGAGACAAACTTTGATTCGATCAAAAATGATGAAAAGAAAAGCTTTTCTTACAAC
ACCAAAGATTCAATGTCATGAATCCTAATGAAGGGAATGTGTTTTGGCTTCCCAATCTTGAAAAG
Found at i:47295 original size:476 final size:473
Alignment explanation
Indices: 46321--47496 Score: 1476
Period size: 476 Copynumber: 2.5 Consensus size: 473
46311 TATTAATAAG
* * *
46321 ACTATGTTTATGGTGCCTAATCCTAAAAAGAACGGGGATTAGTATGAGTATTCATGTTTG-CCTT
1 ACTATGTTTATGGTGCCTAATCCTGAAAAGAACAGGGATTATTA-GAGTATTCATGTTTGTCC-T
* * *
46385 ATTTAAGAGACAAACTTTGATTCTATCAAAAAGGGTGGAAAGAAAAACTTTTCTTTCGACACCAA
64 ATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAA
* * * * * *
46450 AGCATCAATGTCATGTATCTTAATGATGGCAATGTGGTTTTGGCTTCCC-AGCGTTGAAAAGAGT
129 AGCATCAATGTCATGTATCCTAATGAAGGGAAT-TTGTTTTGGCTTCCCAATC-TTGAAAAGAAT
* * *
46514 GGAGACTATTACGAAAATCGATGCTTGTCTTATTTAAGGTATGAACTTTGATTTAAAGGAAAACA
192 GGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGTATAAACTTTGATTTAAAGGAAAACA
* * * * * *
46579 GGCTAAGGAAAAGATTTCCATGGAAAATAAAATCATCAATGTCATTTATCCTAACTAGGAGAATG
257 GGCTAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAACGAAGAGAATG
* * * *
46644 TTTATTGTGCCTAATCACAAAATGAATAAAGATCATTACTAGAATCTATGTTTGTCTCATTTGAG
322 TTTATAGTGCCTAATCACAAAATGAATAAAGATCATTACTAGAATCCATGTTTGCCTCATTCGAG
** * * * *
46709 GCATGAACTTAGACTTTACAAAAATTTGTGGGAAAAAAGCCTTTCTTGCAAAACCAAAGCATCAA
387 GCACAAACATAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCGTGCAAAACCAAAGCAGCAA
* *
46774 TATGATGTATCCTAATGAGAAC
452 TATGATGTATCCTAAGGAGAAA
* * * ** *
46796 AGTATGTTTATGCTGCGTAATCCTGAAAAGAACAGGGATTATTAGGAGTATTTGTGTTTGTTCTA
1 ACTATGTTTATGGTGCCTAATCCTGAAAAGAACAGGGATTATTA-GAGTATTCATGTTTGTCCTA
* * * *
46861 TTTAAGAGACAAACTTTGATTCAATCAAAAATGGTGGAAAGAAAAGCTTTTCATGCGACACCCAA
65 TTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAA
*
46926 G-ATCTAATGT-ATTGAATCCTAATGAAGGGAATTTGTTTTGGCTTCCCAATCTTGAAAAGAATG
130 GCATC-AATGTCA-TGTATCCTAATGAAGGGAATTTGTTTTGGCTTCCCAATCTTGAAAAGAATG
* * * *
46989 GAGACTGTTATGAGAATCGATGGTTGTCTTATTTAAAGG-ATAAAGTTTGATTTTAAA-GAAAAT
193 GAGACTGTTACGAGAATCGATGCTTGTCTTATTT-AAGGTATAAACTTTGA-TTTAAAGGAAAAC
* * * * * * *
47052 AGGGTAAAGAAAAGATTTTCGTGCAAAAGAAAATC-GCTAATATCATTTTTTCTAACGAAGTGAA
256 AGGCTAAAGAAAAGATTTCCATGCAAAAGAAAATCATC-AATATCATTTATCCTAACGAAGAGAA
* * * *
47116 TGTGTTTATAGTGCCTAATCCCGAAAA-GAATGAAGATTATTACTGGAATCCATGTTTGCCTCAT
320 --TGTTTATAGTGCCTAATCAC-AAAATGAATAAAGATCATTACTAGAATCCATGTTTGCCTCAT
* * *
47180 TCGAGGCACAAACATAGACTTTACAAAAATTGGTGGGAAAAAAGCTTTTCGTGCGAAACCAAAGT
382 TCGAGGCACAAACATAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCGTGCAAAACCAAAGC
* *
47245 AGCAATATGATTTATCCTTAGGAGAAA
447 AGCAATATGATGTATCCTAAGGAGAAA
*
47272 ACTATGTTTATGGTGCCTAATCCTGAAAAGAACATGGATTACTATAG-GTATTCATGTTTGTCCT
1 ACTATGTTTATGGTGCCTAATCCTGAAAAGAACAGGGATTA-T-TAGAGTATTCATGTTTGTCCT
* * *
47336 ATTAAAGAGACAAACTTTGATTCTTTTAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACA-CAA
64 ATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAA
* *
47400 AGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGCTT-CCAATCTTGAAACGAATG
129 AGCATCAATGTCATGTATCCTAATGAAGGGAATTTG-TTTTGGCTTCCCAATCTTGAAAAGAATG
* *
47464 GAGA-TGTTACGAGAATCGATGTTTGTCTCATTT
193 GAGACTGTTACGAGAATCGATGCTTGTCTTATTT
47497 GAGGCACAAA
Statistics
Matches: 602, Mismatches: 84, Indels: 31
0.84 0.12 0.04
Matches are distributed among these distances:
473 1 0.00
474 148 0.25
475 197 0.33
476 248 0.41
477 6 0.01
478 2 0.00
ACGTcount: A:0.35, C:0.14, G:0.20, T:0.32
Consensus pattern (473 bp):
ACTATGTTTATGGTGCCTAATCCTGAAAAGAACAGGGATTATTAGAGTATTCATGTTTGTCCTAT
TTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAG
CATCAATGTCATGTATCCTAATGAAGGGAATTTGTTTTGGCTTCCCAATCTTGAAAAGAATGGAG
ACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGTATAAACTTTGATTTAAAGGAAAACAGGCT
AAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAACGAAGAGAATGTTTA
TAGTGCCTAATCACAAAATGAATAAAGATCATTACTAGAATCCATGTTTGCCTCATTCGAGGCAC
AAACATAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCGTGCAAAACCAAAGCAGCAATATG
ATGTATCCTAAGGAGAAA
Found at i:47557 original size:315 final size:316
Alignment explanation
Indices: 47161--47813 Score: 933
Period size: 315 Copynumber: 2.1 Consensus size: 316
47151 ATTATTACTG
* * * *
47161 GAATCCATGTTTGCCTCATTCGAGGCACAAACATAGACTTTACAAAAATTGGTGGGAAAAAAGCT
1 GAATCGATGTTTGTCTCATTTGAGGCACAAACATAGACTTTACAAAAATTGGTGGGAAAAAAGCC
*
47226 TTTCGTGCGAAACCAAAGTAG-CAATATGATTTATCCT-TAGGAGAAAACTATGTTTATGGTGCC
66 TTTCGTGCGAAACCAAAGT-GTCAATATGATGTATCCTATAGGA-AAAA-TATGTTTATGGTGCC
*
47289 TAATCCTGAAAAGAACATGGATTACTAT-AGGTATTCATGTTTGTCC-TATTAAAGAGACAAACT
128 TAATCCTGAAAAGAACAGGGATTACTATGA-GTATTCATGTTTG-CCTTATTAAAGAGACAAACT
* * * * *
47352 TTGATTCTTTTAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGAC-ACAAAGCATCAATGTCATGT
191 TTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTACGACGACAAAGCATCAACGTCATGC
**
47416 ATCCTAATGAAGGGAATGTGTTTTTGGCTT-CCAATCTTGAAACGAATGGAGA-TGTTACGA
256 ATCCTAATGAAGGGAATGTG-TTTTGGCTTCCCAATCTTGAAAAAAATGGAGACTGTTACGA
**
47476 GAATCGATGTTTGTCTCATTTGAGGCACAAATTTAGACTTTACAAAAATTGGTGGGAAAAAAGCC
1 GAATCGATGTTTGTCTCATTTGAGGCACAAACATAGACTTTACAAAAATTGGTGGGAAAAAAGCC
* * *
47541 TTTCTTGCGAAACCAAAGTGTCAATATGATGTATCCTAATATGAAGAATATGTTTATGGTGCCTA
66 TTTCGTGCGAAACCAAAGTGTCAATATGATGTATCCT-ATAGGAAAAATATGTTTATGGTGCCTA
* * * *
47606 ATCTTGAAAAGAACAGGGATTAGTATGAGTATTCATGTTTGCCTTATTTAAGAGAGAAACTTTGA
130 ATCCTGAAAAGAACAGGGATTACTATGAGTATTCATGTTTGCCTTATTAAAGAGACAAACTTTGA
* * *
47671 TTCTATCAAAAACGGTGGAAAGAAATGCTTTTCTTACGACGCCAAAGCATCAACGTCATGCATTC
195 TTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTACGACGACAAAGCATCAACGTCATGCATCC
* *
47736 TAATGAAGGGAATGTGTTTTGGCTTCCCAATCTTGAAAAAAATGGTGACTGTTATGA
260 TAATGAAGGGAATGTGTTTTGGCTTCCCAATCTTGAAAAAAATGGAGACTGTTACGA
* *
47793 GAATCGATGCTTGTCTTATTT
1 GAATCGATGTTTGTCTCATTT
47814 AAAGGATTAA
Statistics
Matches: 301, Mismatches: 29, Indels: 14
0.88 0.08 0.04
Matches are distributed among these distances:
314 3 0.01
315 209 0.69
316 59 0.20
317 30 0.10
ACGTcount: A:0.34, C:0.15, G:0.20, T:0.31
Consensus pattern (316 bp):
GAATCGATGTTTGTCTCATTTGAGGCACAAACATAGACTTTACAAAAATTGGTGGGAAAAAAGCC
TTTCGTGCGAAACCAAAGTGTCAATATGATGTATCCTATAGGAAAAATATGTTTATGGTGCCTAA
TCCTGAAAAGAACAGGGATTACTATGAGTATTCATGTTTGCCTTATTAAAGAGACAAACTTTGAT
TCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTACGACGACAAAGCATCAACGTCATGCATCCT
AATGAAGGGAATGTGTTTTGGCTTCCCAATCTTGAAAAAAATGGAGACTGTTACGA
Found at i:47768 original size:159 final size:157
Alignment explanation
Indices: 46346--47774 Score: 449
Period size: 159 Copynumber: 9.0 Consensus size: 157
46336 CCTAATCCTA
*
46346 AAAAGAACGGGGATTAGTATGAGTATTCATGTTTGCCTTATTTAAGAGACAAACTTTGATTCTAT
1 AAAAGAACAGGGATTAGTATGAGTATTCATGTTTGCCTTATTTAAGAGACAAACTTTGATTCTAT
* * * *
46411 CAAAAAGGGTGGAAAGAAAAACTTTTCTTTCGACACCAAAGCATCAATGTCATGTATCTTAATGA
66 CAAAAACGGTGGAAAG-AAAGCTTTTCTTGCGAC-CCAAAGCATCAATGTCATGTATCCTAATGA
* * *
46476 TGGCAATGTGGTTTTGGCTTCCC-AGCGTTG
129 AGGGAATGT-GTTTTGGCTTCCCAATC-TTG
** * * * * * * * **
46506 AAAAG-AGTGGAGACTATTACGA-AAATCGATGCTTGTCTTATTTAAG-GTATGAACTTTGATT-
1 AAAAGAACAGG-GATTAGTATGAGTATTC-ATGTTTGCCTTATTTAAGAG-ACAAACTTTGATTC
* * * * * *** * *
46567 TA-AAGGAAAACAGGCT--AAGGAAAAGATTTCCATG-GAAAATAAAATCATCAATGTCATTTAT
63 TATCA--AAAAC-GG-TGGAAAG-AAAGCTTTTCTTGCG--ACCCAAAGCATCAATGTCATGTAT
* * **
46628 CCTAACT--AGGAGAATGT-TTATT-G-TGCCTAATC-AC
121 CCTAA-TGAAGG-GAATGTGTT-TTGGCTTCCCAATCTTG
* ** * * * * * * *
46662 AAAATGAATAAAGATCATTACT-AG-AATCTATGTTTGTCTCATTT--GAGGCATGAACTTAGAC
1 AAAA-GAACAGGGATTAGTA-TGAGTATTC-ATGTTTGCCTTATTTAAGAGACA--AACTTTGA-
** * * * * *
46723 TT-TA-CAAAAATTTGTGGGAAA-AAAGCCTTTCTTGCAAAACCAAAGCATCAATATGATGTATC
60 TTCTATCAAAAA-CGGT-GGAAAGAAAGCTTTTCTTGC-GACCCAAAGCATCAATGTCATGTATC
* * * ** *
46785 CTAATG-A-GAACAGTATGTTTAT-GCTGCGTAATCCTG
122 CTAATGAAGGGA-A-TGTGTTT-TGGCTTCCCAATCTTG
* * ** * *
46821 AAAAGAACAGGGATTATTAGGAGTATTTGTGTTTG-TTCTATTTAAGAGACAAACTTTGATTCAA
1 AAAAGAACAGGGATTAGTATGAGTATTCATGTTTGCCT-TATTTAAGAGACAAACTTTGATTCTA
* * * *
46885 TCAAAAATGGTGGAAAGAAAAGCTTTTCATGCGACACCCAAG-ATCTAATGT-ATTGAATCCTAA
65 TCAAAAACGGTGGAAAG-AAAGCTTTTCTTGCGAC-CCAAAGCATC-AATGTCA-TGTATCCTAA
*
46948 TGAAGGGAATTTGTTTTGGCTTCCCAATCTTG
126 TGAAGGGAATGTGTTTTGGCTTCCCAATCTTG
* * * * * * *
46980 AAAAGAA-TGGAGACT-GTTATGAG-AATCGATGGTTGTCTTATTTAA-AGGATAAAGTTTGATT
1 AAAAGAACAGG-GATTAG-TATGAGTATTC-ATGTTTGCCTTATTTAAGA-GACAAACTTTGATT
* * * * * * * *** * * *
47041 TTA-AAGAAAATAGG-GTAAAGAAAAGATTTTCGTGCAAAAGAAA--ATCGCTAATATCATTTTT
62 CTATCA-AAAA-CGGTGGAAAG-AAAGCTTTTCTTGCGACCCAAAGCAT--C-AATGTCATGTAT
* * * * * * **
47102 TCTAACGAAGTGAATGTGTTTATAG-TGCCTAATCCCG
121 CCTAATGAAGGGAATGTGTTT-TGGCTTCCCAATCTTG
* * * * * * ** * *
47139 AAAAGAA-TGAAGATTATTACTG-GAATCCATGTTTGCCTCATTCGAG-GCACAAACATAGACTT
1 AAAAGAACAG-GGATTAGTA-TGAGTATTCATGTTTGCCTTATTTAAGAG-ACAAACTTTGA-TT
* * * * * * * *
47201 -TA-CAAAAATTGGTGGGAAA-AAAGCTTTTCGTGCGAAACCAAAGTAGCAATATGATTTATCCT
62 CTATCAAAAA-CGGT-GGAAAGAAAGCTTTTCTTGCG-ACCCAAAGCATCAATGTCATGTATCCT
* * ** * * * *
47263 TA-GGAGAAAACTATGTTTATGG-TGCCTAATCCTG
124 AATGAAGGGAA-TGTGTTT-TGGCTTCCCAATCTTG
* * *
47297 AAAAGAACATGGATTACTAT-AGGTATTCATGTTTGTCC-TATTAAAGAGACAAACTTTGATTCT
1 AAAAGAACAGGGATTAGTATGA-GTATTCATGTTTG-CCTTATTTAAGAGACAAACTTTGATTCT
* * *
47360 TTTAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACAAAGCATCAATGTCATGTATCCTAATG
64 ATCAAAAACGGTGGAAAG-AAAGCTTTTCTTGCGACCCAAAGCATCAATGTCATGTATCCTAATG
47425 AAGGGAATGTGTTTTTGGCTT-CCAATCTTG
128 AAGGGAATGTG-TTTTGGCTTCCCAATCTTG
* * * * * * *
47455 AAACGAA-TGGAGA-T-GTTACGAG-AATCGATGTTTGTCTCATTTGAG-GCACAAA-TTTAGAC
1 AAAAGAACAGG-GATTAG-TATGAGTATTC-ATGTTTGCCTTATTTAAGAG-ACAAACTTT-GA-
* * * ** * *
47514 TT-TA-CAAAAATTGGTGGGAAA-AAAGCCTTTCTTGCGAAACCAAAGTGTCAATATGATGTATC
60 TTCTATCAAAAA-CGGT-GGAAAGAAAGCTTTTCTTGCG-ACCCAAAGCATCAATGTCATGTATC
* * *
47576 CTAATATGAA--GAATATGTTTATGG-TGCCTAATCTTG
122 CT-A-ATGAAGGGAATGTGTTT-TGGCTTCCCAATCTTG
*
47612 AAAAGAACAGGGATTAGTATGAGTATTCATGTTTGCCTTATTTAAGAGAGAAACTTTGATTCTAT
1 AAAAGAACAGGGATTAGTATGAGTATTCATGTTTGCCTTATTTAAGAGACAAACTTTGATTCTAT
* * * *
47677 CAAAAACGGTGGAAAGAAATGCTTTTCTTACGACGCCAAAGCATCAACGTCATGCATTCTAATGA
66 CAAAAACGGTGGAAAGAAA-GCTTTTCTTGCGAC-CCAAAGCATCAATGTCATGTATCCTAATGA
47742 AGGGAATGTGTTTTGGCTTCCCAATCTTG
129 AGGGAATGTGTTTTGGCTTCCCAATCTTG
47771 AAAA
1 AAAA
47775 AAATGGTGAC
Statistics
Matches: 919, Mismatches: 236, Indels: 229
0.66 0.17 0.17
Matches are distributed among these distances:
154 1 0.00
155 5 0.01
156 77 0.08
157 148 0.16
158 260 0.28
159 314 0.34
160 106 0.12
161 7 0.01
162 1 0.00
ACGTcount: A:0.35, C:0.14, G:0.20, T:0.31
Consensus pattern (157 bp):
AAAAGAACAGGGATTAGTATGAGTATTCATGTTTGCCTTATTTAAGAGACAAACTTTGATTCTAT
CAAAAACGGTGGAAAGAAAGCTTTTCTTGCGACCCAAAGCATCAATGTCATGTATCCTAATGAAG
GGAATGTGTTTTGGCTTCCCAATCTTG
Found at i:47811 original size:159 final size:155
Alignment explanation
Indices: 46850--47815 Score: 466
Period size: 159 Copynumber: 6.1 Consensus size: 155
46840 GGAGTATTTG
* * *
46850 TGTTTGT-TCTATTTAAGAGACAAACTTTGATTCAATCAAAAATGGTGGAAAGAAAAGCTTTTCA
1 TGTTTGTCT-TATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAG-AAAGCTTTTCT
* * *
46914 TGCGACACCCAAG-ATCTAATGT-ATTGAATCCTAATGAAGGGAATTTGTTTTGGCTTCCCAATC
64 TGCGAC-CCAAAGCATC-AATGTCA-TGTATCCTAATGAAGGGAATGTGTTTTGGCTTCCCAATC
*
46977 TTGAAAAGAATGGAGACTGTTATGAGAATCGA
126 TTGAAAAAAATGG-GA-TGTTATGAGAATCGA
* * * * * * * *
47009 TGGTTGTCTTATTTAA-AGGATAAAGTTTGATTTTA-AAGAAAATAGG-GTAAAGAAAAGATTTT
1 TGTTTGTCTTATTTAAGA-GACAAACTTTGATTCTATCA-AAAA-CGGTGGAAAG-AAAGCTTTT
* * *** * * * * * * * * *
47071 CGTGCAAAAGAAA--ATCGCTAATATCATTTTTTCTAACGAAGTGAATGTGTTTATAG-TGCCTA
62 CTTGCGACCCAAAGCAT--C-AATGTCATGTATCCTAATGAAGGGAATGTGTTT-TGGCTTCCCA
** * * * *
47133 ATCCCGAAAAGAATGAAGATTATTACTG-GAATCCA
123 ATCTTGAAAAAAATG-GGA-TGTTA-TGAGAATCGA
* * ** * * *
47168 TGTTTGCCTCATTCGAG-GCACAAACATAGACTT-TA-CAAAAATTGGTGGGAAA-AAAGCTTTT
1 TGTTTGTCTTATTTAAGAG-ACAAACTTTGA-TTCTATCAAAAA-CGGT-GGAAAGAAAGCTTTT
* * * * * * * * * ** * * *
47229 CGTGCGAAACCAAAGTAGCAATATGATTTATCCTTA-GGAGAAAACTATGTTTATGG-TGCCTAA
62 CTTGCG-ACCCAAAGCATCAATGTCATGTATCCTAATGAAGGGAA-TGTGTTT-TGGCTTCCCAA
* *
47292 TCCTGAAAAGAACAT-GGAT-TACTAT-AGGTATTC-A
124 TCTTGAAAA-AA-ATGGGATGT--TATGA-G-AATCGA
* * * *
47326 TGTTTGTCCTATTAAAGAGACAAACTTTGATTCTTTTAAAAACGGTGGAAAGAAAAGCTTTTCTT
1 TGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAG-AAAGCTTTTCTT
*
47391 GCGACACAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGCTT-CCAATCTTG
65 GCGACCCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTG-TTTTGGCTTCCCAATCTTG
** *
47455 AAACGAATGGAGATGTTACGAGAATCGA
129 AAAAAAATGG-GATGTTATGAGAATCGA
* * * *
47483 TGTTTGTCTCATTTGAG-GCACAAA-TTTAGACTT-TA-CAAAAATTGGTGGGAAA-AAAGCCTT
1 TGTTTGTCTTATTTAAGAG-ACAAACTTT-GA-TTCTATCAAAAA-CGGT-GGAAAGAAAGCTTT
* ** * * * * *
47543 TCTTGCGAAACCAAAGTGTCAATATGATGTATCCTAATATGAA--GAATATGTTTATGG-TGCCT
61 TCTTGCG-ACCCAAAGCATCAATGTCATGTATCCT-A-ATGAAGGGAATGTGTTT-TGGCTTCCC
*
47605 AATCTTGAAAAGAACA-GGGAT-TAGTATGAGTATTC-A
122 AATCTTGAAAA-AA-ATGGGATGT--TATGAG-AATCGA
* *
47641 TGTTTGCCTTATTTAAGAGAGAAACTTTGATTCTATCAAAAACGGTGGAAAGAAATGCTTTTCTT
1 TGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAA-GCTTTTCTT
* * * *
47706 ACGACGCCAAAGCATCAACGTCATGCATTCTAATGAAGGGAATGTGTTTTGGCTTCCCAATCTTG
65 GCGAC-CCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTGGCTTCCCAATCTTG
47771 AAAAAAATGGTGACTGTTATGAGAATCGA
129 AAAAAAATGG-GA-TGTTATGAGAATCGA
*
47800 TGCTTGTCTTATTTAA
1 TGTTTGTCTTATTTAA
47816 AGGATTAACT
Statistics
Matches: 604, Mismatches: 134, Indels: 138
0.69 0.15 0.16
Matches are distributed among these distances:
156 34 0.06
157 103 0.17
158 191 0.32
159 257 0.43
160 17 0.03
161 2 0.00
ACGTcount: A:0.35, C:0.14, G:0.20, T:0.32
Consensus pattern (155 bp):
TGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAGCTTTTCTTG
CGACCCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTGGCTTCCCAATCTTGAA
AAAAATGGGATGTTATGAGAATCGA
Found at i:48358 original size:791 final size:791
Alignment explanation
Indices: 46679--48399 Score: 1976
Period size: 791 Copynumber: 2.2 Consensus size: 791
46669 ATAAAGATCA
* * * * ** * * * *
46679 TTACTAGAATCTATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTTG-TGGGAA
1 TTACGAGAATCAATGCTTGTCTCATTTAAGGCACAAATTTAGACTTTACAAAAA-CTGAAGGCAA
* * * * * *
46743 AAAAGCCTTTCTTGC-AAAACCAAAGCATCAATATGATGTATCCTAATGAGAACAGTATGTTTAT
65 AAAAGCATTTCATGCGAAAACAAAATCATCAATATGATGTATCCTAATGAGAAGAATATGTTTAT
* * * ** *
46807 GCTGCGTAATCCTGAAAAGAACAGGGATTATTAGGAGTATTTGTGTTTGTTCTATTTAAGAGACA
130 GGTGCCTAATCCTGAAAAGAACAGGGATTAGTAGGAGTATTCATGTTTGCTCTATTTAAGAGACA
* * * *
46872 AACTTTGATTCAATCAAAAATGGTGGAAAGAAAAGCTTTTCATGCGACACCCAAGATCTAATGTA
195 AACTTTGATTCAATCAAAAACGGTGGAAAGAAAAGCTTTTCATACGACACCAAAGATCTAACGTA
* *
46937 TTGAATCCTAATGAAGGGAATTTGTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTGTTATGA
260 TTGAATCCTAATGAAGGGAATGTGTTTTGGCTTCCCAATCTTGAAAAAAATGGAGACTGTTATGA
* * *
47002 GAATCGATGGTTGTCTTATTTAAAGGATAAAGTTTGATTTTAAAGAAAATAGGGTAAAGAAAAGA
325 GAATCGATGCTTGTCTTATTTAAAGGATAAACTTTGATTTTAAAGAAAATAGGGTAAAGAAAACA
* * * * * * *
47067 TTTTCGTGCAAAAGAAAATCGCTAATATCATTTTTTCTAACGAAGTGAATGTGTTTATAGTGCCT
390 TTTCCATGCAAAAGAAAATCGCTAATATCATTTGTCCTAAAGAAGAGAAAGTGTTTATAGTGCCT
* * *
47132 AATCCCGAAAAGAATGAAGATTATTACTGGAATCCATGTTTGCCTCATTCGAGGCACAAACATAG
455 AATCCAGAAAAGAATGAAGATCATTACTAGAATCCATGTTTGCCTCATTCGAGGCACAAACATAG
* * * * * * *
47197 ACTTTACAAAAATTGGTGGGAAAAAAGCTTTTCGTGCGAAACCAAAGTAGCAATATGATTTATCC
520 ACTATACAAAAAATAGTGGGAAAAAAGCCTTTCGTACGAAACCAAAGCAGCAATATGATGTATCC
* *
47262 TTAGGAGAAAACTATGTTTATGGTGCCTAATCCTGAAAAGAACATGGATTACTATAGGTATTCAT
585 TAAGGAGAAAACTA-GTTTATGGTGCCTAATCCTGAAAAGAACAGGGATTACTATAGGTATTCAT
* **** * *
47327 GTTTGTCCTATTAAAGAGACAAACTTTGATTCTTTTAAAAACGGTGGAAAGAAAAGCTTTTCTTG
649 GTTTATCCTATTAAAGAGACAAACTTTGATAAAATAAAAAACAGTGGAAAGAAAAGCTTTTCTTG
* * * *
47392 CGACACAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGCTTCCAATCTTGAA
714 CAACACAAACCATCAATATCATGTATCCTAATGAAAGGAATGTGTTTTTGGCTTCCAATCTTGAA
*
47457 ACGAATGGAGATG
779 AAGAATGGAGATG
* * * * ** *
47470 TTACGAGAATCGATGTTTGTCTCATTTGAGGCACAAATTTAGACTTTACAAAAATTGGTGGGAAA
1 TTACGAGAATCAATGCTTGTCTCATTTAAGGCACAAATTTAGACTTTACAAAAACTGAAGGCAAA
* * * * *
47535 AAAGCCTTTCTTGCGAAACCAAAGT-GTCAATATGATGTATCCTAAT-ATGAAGAATATGTTTAT
66 AAAGCATTTCATGCGAAAACAAAATCATCAATATGATGTATCCTAATGA-GAAGAATATGTTTAT
* * *
47598 GGTGCCTAATCTTGAAAAGAACAGGGATTAGTATGAGTATTCATGTTTGC-CTTATTTAAGAGAG
130 GGTGCCTAATCCTGAAAAGAACAGGGATTAGTAGGAGTATTCATGTTTGCTC-TATTTAAGAGAC
* * * *
47662 AAACTTTGATTCTATCAAAAACGGTGGAAAGAAATGCTTTTCTTACGACGCCAAAGCATC-AACG
194 AAACTTTGATTCAATCAAAAACGGTGGAAAGAAAAGCTTTTCATACGACACCAAAG-ATCTAACG
* * *
47726 TCA-TGCATTCTAATGAAGGGAATGTGTTTTGGCTTCCCAATCTTGAAAAAAATGGTGACTGTTA
258 T-ATTGAATCCTAATGAAGGGAATGTGTTTTGGCTTCCCAATCTTGAAAAAAATGGAGACTGTTA
* * *
47790 TGAGAATCGATGCTTGTCTTATTTAAAGGATTAACTTTGATTTTAAGGAAAATAGGGTAAGGAAA
322 TGAGAATCGATGCTTGTCTTATTTAAAGGATAAACTTTGATTTTAAAGAAAATAGGGTAAAGAAA
* * *
47855 CCATTTCCATGCAAAAGAAAATC-ATCAATATCATTTGTCCTAAAGAGGAGAAAGTGTTTATAGT
387 ACATTTCCATGCAAAAGAAAATCGCT-AATATCATTTGTCCTAAAGAAGAGAAAGTGTTTATAGT
* * * *
47919 GCTTAAT-CAGAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTTATTTGAGGCACGAA
451 GCCTAATCCAGAAAA-GAATGAAGATCATTACTAGAATCCATGTTTGCCTCATTCGAGGCAC-AA
* * *
47983 A-ATAGACTATA-AAAAAATAGTGGGAAAAAAGCCTTTCTTACGAAACTAATGCA-CAATATGAT
514 ACATAGACTATACAAAAAATAGTGGGAAAAAAGCCTTTCGTACGAAACCAAAGCAGCAATATGAT
* * ** * ** *
48045 GTATCCTAATGAGAAGACTA-TTTATTTTGCCTAATCCTGAAATGAATGGGGATTAGTAT-GAGT
579 GTATCCTAAGGAGAAAACTAGTTTATGGTGCCTAATCCTGAAAAGAACAGGGATTACTATAG-GT
* * * *
48108 ATAT-ATGTTTATCTTATTTAAGAGATAAACTTTGGTAAAAATAAAAAACAGTGGAAAGAAAAGC
643 AT-TCATGTTTATCCTATTAAAGAGACAAACTTTGAT-AAAATAAAAAACAGTGGAAAGAAAAGC
* *
48172 TTTTCTTGCAATGC-CAAACCATTAATATCATGTATGCTAATGAAAGGAATGTG-TTTTGGCTTC
706 TTTTCTTGCAA--CACAAACCATCAATATCATGTATCCTAATGAAAGGAATGTGTTTTTGGCTT-
48235 CCAATCTTGAAAAGAATGGAGACTG
768 CCAATCTTGAAAAGAATGGAGA-TG
* * * * *
48260 TTACGAGAATCAATGCTTGTCTTATTTAAGAG-ATGAACTTT-GATTTTA-AGGAAACT-AAGGC
1 TTACGAGAATCAATGCTTGTCTCATTTAAG-GCA-CAAATTTAGACTTTACA-AAAACTGAAGGC
* * * * **
48321 AAAGAATAG-ATTTCCATGC-AAAAGAAAATCATCAATATCATCTATCCTAATGAGGAGAATGCG
63 AAA-AA-AGCATTT-CATGCGAAAACAAAATCATCAATATGATGTATCCTAATGAGAAGAATATG
*
48384 TTTATAGTGCCTAATC
125 TTTATGGTGCCTAATC
48400 ACAAAATGAA
Statistics
Matches: 787, Mismatches: 119, Indels: 48
0.82 0.12 0.05
Matches are distributed among these distances:
786 1 0.00
787 63 0.08
788 41 0.05
789 86 0.11
790 98 0.12
791 484 0.61
792 14 0.02
ACGTcount: A:0.36, C:0.13, G:0.19, T:0.31
Consensus pattern (791 bp):
TTACGAGAATCAATGCTTGTCTCATTTAAGGCACAAATTTAGACTTTACAAAAACTGAAGGCAAA
AAAGCATTTCATGCGAAAACAAAATCATCAATATGATGTATCCTAATGAGAAGAATATGTTTATG
GTGCCTAATCCTGAAAAGAACAGGGATTAGTAGGAGTATTCATGTTTGCTCTATTTAAGAGACAA
ACTTTGATTCAATCAAAAACGGTGGAAAGAAAAGCTTTTCATACGACACCAAAGATCTAACGTAT
TGAATCCTAATGAAGGGAATGTGTTTTGGCTTCCCAATCTTGAAAAAAATGGAGACTGTTATGAG
AATCGATGCTTGTCTTATTTAAAGGATAAACTTTGATTTTAAAGAAAATAGGGTAAAGAAAACAT
TTCCATGCAAAAGAAAATCGCTAATATCATTTGTCCTAAAGAAGAGAAAGTGTTTATAGTGCCTA
ATCCAGAAAAGAATGAAGATCATTACTAGAATCCATGTTTGCCTCATTCGAGGCACAAACATAGA
CTATACAAAAAATAGTGGGAAAAAAGCCTTTCGTACGAAACCAAAGCAGCAATATGATGTATCCT
AAGGAGAAAACTAGTTTATGGTGCCTAATCCTGAAAAGAACAGGGATTACTATAGGTATTCATGT
TTATCCTATTAAAGAGACAAACTTTGATAAAATAAAAAACAGTGGAAAGAAAAGCTTTTCTTGCA
ACACAAACCATCAATATCATGTATCCTAATGAAAGGAATGTGTTTTTGGCTTCCAATCTTGAAAA
GAATGGAGATG
Found at i:48775 original size:477 final size:474
Alignment explanation
Indices: 47470--50169 Score: 3324
Period size: 477 Copynumber: 5.7 Consensus size: 474
47460 AATGGAGATG
* * * *
47470 TTACGAGAATCGATGTTTGTCTCATTTGAGGCACAAATTTAGACTTTACAAAAATTGGTGGGAAA
1 TTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAA
** *
47535 AAAGCCTTTCTTGCGAAACCAAAGTGTCAATATGATGTATCCTAAT-ATGAAGAATATGTTTATG
66 AAAGCCTTTCTTGCGAAACCAAAGCATCAATATGATGTATCCTAATGA-GAAGACTATGTTTATG
** *
47599 GTGCCTAATCTTGAAAAGAACAGGGATTAGTATGAGTATTCATGTTTGCCTTATTTAAGAGAGAA
130 GTGCCTAATCTT-AAAAGAACAGGGATTAGTATGAGTATTCATGTTTATCTTATTTAAGAGACAA
* * * *
47664 ACTTTGATTCTATCAAAAACGGTGGAAAGAAATGCTTTTCTTACGACGCCAAAGCATCAACGTCA
194 ACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCA
* * * * *
47729 TGCATTCTAATGAAGGGAATGTGTTTTGGCTTCCCAATCTTGAAAAAAATGGTGACTGTTATGAG
259 TGTA-TCTAATGAAGGGAATGTGTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTATTACGAG
* * **
47794 AATCGATGCTTGTCTTATTTAAAGG-ATTAACTTTGATTTTAAGGAAAATAGGGTAAGGAAACCA
323 AATCGATGCTTGTCTTATTT-AAGGTATGAACTTTGATTTTAAGGAAAATAGGGTAAAGAAAAGA
* * * * * *
47858 TTTCCATGCAAAAGAAAATCATCAATATCATTTGTCCTAAAGAGGAGAAAGTGTTTATAGTGCTT
387 TTTCCACGCAAAAGAAAATCATTAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCT
*
47923 AATCAGAAAATGAATGAAGATCA
452 AATCACAAAATGAATGAAGATCA
* ** * * *
47946 TTACTAGAATCCATGTTTGTCTTATTTGAGGCACGAAAATAGACTATA-AAAAAATAGTGGGAAA
1 TTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAA
* * * **
48010 AAAGCCTTTCTTACGAAACTAATGCA-CAATATGATGTATCCTAATGAGAAGACTA--TTTATTT
66 AAAGCCTTTCTTGCGAAACCAAAGCATCAATATGATGTATCCTAATGAGAAGACTATGTTTATGG
* * ** *
48072 TGCCTAATCCTGAAATGAATGGGGATTAGTATGAGTATAT-ATGTTTATCTTATTTAAGAGATAA
131 TGCCTAAT-CTTAAAAGAACAGGGATTAGTATGAGTAT-TCATGTTTATCTTATTTAAGAGACAA
* *** * * * ** * * *
48136 ACTTTGGTAAAAATAAAAAACAGTGGAAAGAAAAGCTTTTCTTGCAATGCCAAACCATTAATATC
194 ACTTTGAT-TCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTC
* *
48201 ATGTATGCTAATGAAAGGAATGTGTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTGTTACGA
258 ATGTAT-CTAATGAAGGGAATGTGTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTATTACGA
* * * * *
48266 GAATCAATGCTTGTCTTATTTAAGAG-ATGAACTTTGATTTTAAGGAAACTAAGGCAAAGAATAG
322 GAATCGATGCTTGTCTTATTTAAG-GTATGAACTTTGATTTTAAGGAAAATAGGGTAAAGAAAAG
* * * *
48330 ATTTCCATGCAAAAGAAAATCATCAATATCATCTATCCTAATGAGGAGAATGCGTTTATAGTGCC
386 ATTTCCACGCAAAAGAAAATCATTAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCC
* *
48395 TAATCACAAAATGAACGAAGATTA
451 TAATCACAAAATGAATGAAGATCA
* * *
48419 TTACTTGAATCCATGTTTGTCTCATTTGAGGCTA-GAACTTAGACTTTAGAAAAATTGGAGGGAA
1 TTACTAGAATCCATGTTTGTCTCATTTGAGGC-ACGAACTTAGACTTTACAAAAATTGGTGGGAA
* * *
48483 AAAAGCCTTTCTTGCGAAACTAAAGCATCAATTTAATGTATCCTAATGAGAAGACTATGTTTATG
65 AAAAGCCTTTCTTGCGAAACCAAAGCATCAATATGATGTATCCTAATGAGAAGACTATGTTTATG
* * * *
48548 GTGCCTAATCTTGGAAAGAACAGGGATTAGTATGAGTATTCATGTTTATCATA-TTCAGTGGACA
130 GTGCCTAATCTT-AAAAGAACAGGGATTAGTATGAGTATTCATGTTTATCTTATTTAAG-AGACA
* *
48612 AACTTTGATTCTATCAAAAACGGTGGAAAAAAAAGCTTTTCTTGCGACACCAAAGCATCAATATC
193 AACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTC
* * * * *
48677 TTGTATCATAATGAAGGGAACGTGTTTTTCGCTTCCCAATCTTGAAAGGAATGGAGACTATAACG
258 ATGTATC-TAATGAAGGGAATGTG-TTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTATTACG
48742 AGAATCGATGCTTGT-TGTATTTAAGGTATGAACTTTGATTTTAAGGAAAATAGGGTAAA-AAAA
321 AGAATCGATGCTTGTCT-TATTTAAGGTATGAACTTTGATTTTAAGGAAAATAGGGTAAAGAAAA
* * * * *
48805 GGATTTTCACGTAAAAGAAAATCATTAATATCATTTATCCTATTGAGGGGAATGT-TTAATCACA
385 -GATTTCCACGCAAAAGAAAATCATTAATATCATTTATCCTAATGAGGAGAATGTGTT--T-ATA
* *
48869 GTGTCTAATCACAAGATGAATGAAGATCA
446 GTGCCTAATCACAAAATGAATGAAGATCA
* * * *
48898 TTACTGGAATCCATGTTTGTCTCATTTGGGGCAC-AGACTTAAACTTTGCAAAAATTGGTGGGAA
1 TTACTAGAATCCATGTTTGTCTCATTTGAGGCACGA-ACTTAGACTTTACAAAAATTGGTGGGAA
*
48962 AAATGCCTTTCTTGCGAAACCAAAGCATCAATATTG-TGTATCCTAATGAGAAGACTA--TTTAT
65 AAAAGCCTTTCTTGCGAAACCAAAGCATCAATA-TGATGTATCCTAATGAGAAGACTATGTTTAT
* * * *
49024 GGTGCCTAATCCTAAAATGAATAGGGATTAGTATGAGTATTTATGTTTATCTTATTTAAAAGACA
129 GGTGCCTAATCTTAAAA-GAACAGGGATTAGTATGAGTATTCATGTTTATCTTATTTAAGAGACA
** * * * *
49089 AACTTTGATAATAATCAAAAATGGTGGAAAGAAAATCTTTTCTTGTGACACCAAAGCATGAATGT
193 AACTTTGATTCT-ATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGT
* * * **
49154 CATGTATGCTAATGAAAGAAATGTGTTTTGGCTTCCCAATCTTGAAAAAAACAGAGACTATTACG
257 CATGTAT-CTAATGAAGGGAATGTGTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTATTACG
* * * * *
49219 AGAATCGATGCTTGTCTTATTTAAGAGT-TGAACTTTGATTTTAGGGAAAATAAGGCAAAGCATA
321 AGAATCGATGCTTGTCTTATTTAAG-GTATGAACTTTGATTTTAAGGAAAATAGGGTAAAGAAAA
* ** * * *
49283 GATTTCTACGCAAAAGAAAATCATTAATATCATCGATCCTAATAAAGAGAATGTGTTTATAGTGT
385 GATTTCCACGCAAAAGAAAATCATTAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGC
*
49348 CTAATCACAAAATGAACGAAGATCA
450 CTAATCACAAAATGAATGAAGATCA
49373 TTACTTA-AATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGG-A
1 TTAC-TAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAA
* * * * *
49436 AAAAGCCTTTCTTGTGAAACCAAAGCATCAGTGTGACGCATCCTAATGAGAAGACTATGTTTATG
65 AAAAGCCTTTCTTGCGAAACCAAAGCATCAATATGATGTATCCTAATGAGAAGACTATGTTTATG
* * * * *
49501 GTGCCGAATCGTTAAAAGAATAGGGATTAGTATGAGTATTCATGTTTGTCGTATTTAAGAGCCAA
130 GTGCCTAATC-TTAAAAGAACAGGGATTAGTATGAGTATTCATGTTTATCTTATTTAAGAGACAA
** ** * * *
49566 ACTTTGATTCTATCAATGACGGTGGAAAGAAAAGCTTTTCTTATGGCACTAAAACATCAATGTCA
194 ACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCA
* * *
49631 TGTATCATAATGAAGGG-ATCGTGTTTTTGGCTTCCTAATCTTGAAAAGAATAGAGACTATAACG
259 TGTATC-TAATGAAGGGAAT-GTG-TTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTATTACG
* * *
49695 AGAAATCAATGCTTGTCGTATTTAAGGTATGAACTTTGATTTAAAGGAAAATAGGGTAAAGAAAA
321 AG-AATCGATGCTTGTCTTATTTAAGGTATGAACTTTGATTTTAAGGAAAATAGGGTAAAGAAAA
* * * *
49760 GATTTTCACGCAAAAGAAAATCATTATTATCATTTATCCTAATGAGGGGAATATGTTTATAGTGC
385 GATTTCCACGCAAAAGAAAATCATTAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGC
* *
49825 ATAATCACAAGATGAATGAAGATCA
450 CTAATCACAAAATGAATGAAGATCA
* * *
49850 TTACTAGAATCCATGTTTGTCTTATTTGAGGCATGAACTTAGACTTTACAAAAA-T-GTAAGGAA
1 TTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGT-GGGAA
* * * * *
49913 AAAAGCCTTTCTTGCGAAACCGAAGCATCAATATGATTTATCCTAAGGAGAAAACTATGTTTGTG
65 AAAAGCCTTTCTTGCGAAACCAAAGCATCAATATGATGTATCCTAATGAGAAGACTATGTTTATG
* * * * * * *
49978 GTGTCTAATCTTGAAAAGAACAGGGATTGGTGTGAGTATTCATGTTTGTCATATTTTAGTGACAA
130 GTGCCTAATCTT-AAAAGAACAGGGATTAGTATGAGTATTCATGTTTATCTTATTTAAGAGACAA
* * * *
50043 ACTTCGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCAACACCAAAGCTTCAATGTCA
194 ACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCA
* *
50108 TGTATCCTAATGAAGGGAATGTGTTTTTGGCTTCCCAGTCTTG-AAAGAATGGAGACTGTTAC
259 TGTAT-CTAATGAAGGGAATGTG-TTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTATTAC
50170 TTTAATCCAT
Statistics
Matches: 1907, Mismatches: 267, Indels: 100
0.84 0.12 0.04
Matches are distributed among these distances:
472 68 0.04
473 278 0.15
474 116 0.06
475 210 0.11
476 255 0.13
477 765 0.40
478 81 0.04
479 133 0.07
480 1 0.00
ACGTcount: A:0.36, C:0.13, G:0.19, T:0.31
Consensus pattern (474 bp):
TTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAA
AAAGCCTTTCTTGCGAAACCAAAGCATCAATATGATGTATCCTAATGAGAAGACTATGTTTATGG
TGCCTAATCTTAAAAGAACAGGGATTAGTATGAGTATTCATGTTTATCTTATTTAAGAGACAAAC
TTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATG
TATCTAATGAAGGGAATGTGTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTATTACGAGAAT
CGATGCTTGTCTTATTTAAGGTATGAACTTTGATTTTAAGGAAAATAGGGTAAAGAAAAGATTTC
CACGCAAAAGAAAATCATTAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATC
ACAAAATGAATGAAGATCA
Found at i:50225 original size:159 final size:157
Alignment explanation
Indices: 50040--50486 Score: 391
Period size: 157 Copynumber: 2.8 Consensus size: 157
50030 ATTTTAGTGA
* *
50040 CAAACTTCGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCAACACCAAAGCTTCAATG
1 CAAACTTAGACTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCAACACCAAAGCTTCAATG
*
50105 TCATGTATCCTAATGAAGGGAATGTGTTTTTGGCTTCCCAGTCTTG-AAAGAATGGAGACTGTTA
66 TCATGTATCCTAATGAAGGGAATGTGTTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTGTTA
* *
50169 CTTTAATCCATTCATGTC-TC-ATTT-GAGG
131 --TAAAT--ATTCATGTCATCAATTTAGAGC
* * * * *
50197 CATGAGCTTAGACTCTA-CAAAAATTGGTGG-GA-AAAAGCCTTTCTTGTGAA-ACCAAAGCTTT
1 CA--AACTTAGACTCTATCAAAAA-TGGTGGAAAGAAAAGCTTTTCTTG-CAACACCAAAGCTTC
* * * * * * * * *
50258 AGTGTGATGTATCCTAATG-AGAAGACTATGTTTATGG-TGT-CGAATCCTGAAAAGAGTAGGA-
62 AATGTCATGTATCCTAATGAAG-GGAATGTGTTTTTGGCT-TCCCAATCTTGAAAAGAAT-GGAG
50319 ACTAG-TATAAATATTCATGTCTATCATATTTAAGAGC
124 ACT-GTTATAAATATTCATGTC-ATCA-ATTT-AGAGC
* * * ** * * * * *
50356 CAAACTTTGATTTTATCAAAGGTGGCGGAAAGAAAAGCTTTTATT-CGGACACCAAAACATCAAT
1 CAAACTTAGACTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGC-AACACCAAAGCTTCAAT
50420 GTCATGTATCCTAATGAAGGGAATGTGTTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTGTT
65 GTCATGTATCCTAATGAAGGGAATGTGTTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTGTT
50485 AT
130 AT
50487 GAGAATCGAT
Statistics
Matches: 222, Mismatches: 43, Indels: 47
0.71 0.14 0.15
Matches are distributed among these distances:
153 9 0.04
155 6 0.03
156 9 0.04
157 83 0.37
158 19 0.09
159 73 0.33
160 23 0.10
ACGTcount: A:0.33, C:0.16, G:0.20, T:0.31
Consensus pattern (157 bp):
CAAACTTAGACTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCAACACCAAAGCTTCAATG
TCATGTATCCTAATGAAGGGAATGTGTTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTGTTA
TAAATATTCATGTCATCAATTTAGAGC
Found at i:50336 original size:316 final size:316
Alignment explanation
Indices: 49867--50485 Score: 830
Period size: 316 Copynumber: 2.0 Consensus size: 316
49857 AATCCATGTT
* *
49867 TGTCTTATTTGAGGCATGAACTTAGACTTTACAAAAATGTAAGGAAAAAAGCCTTTCTTGCGAAA
1 TGTCTCATTTGAGGCATGAACTTAGACTCTACAAAAATGT-AGGAAAAAAGCCTTTCTTGCGAAA
* * * * *
49932 CCGAAGCATCAATATGATTTATCCTAAGGAGAAAACTATGTTTGTGGTGTCTAATCTTGAAAAGA
65 CCAAAGCATCAATATGATGTATCCTAAGGAGAAAACTATGTTTATGGTGTCGAATCCTGAAAAGA
* * * * * * * * * *
49997 ACAGGGATTGGTGTGAGTATTCATGTTTGTCATATTTTAGTGACAAACTTCGATTCTATCAAAAA
130 ACAGGAACTAGTATAAATATTCATGTCTATCATATTTAAGAGACAAACTTCGATTCTATCAAAAA
* * * *
50062 TGGTGGAAAGAAAAGCTTTTCTT-GCAACACCAAAGCTTCAATGTCATGTATCCTAATGAAGGGA
195 TGGCGGAAAGAAAAGCTTTTATTCG-AACACCAAAACATCAATGTCATGTATCCTAATGAAGGGA
*
50126 ATGTGTTTTTGGCTTCCCAGTCTTG-AAAGAATGGAGACTGTTACTTTAATCCATTCA
259 ATGTGTTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTGTTACTTTAATCCATTCA
* * *
50183 TGTCTCATTTGAGGCATGAGCTTAGACTCTACAAAAATTGGT-GGGAAAAAGCCTTTCTTGTGAA
1 TGTCTCATTTGAGGCATGAACTTAGACTCTACAAAAA-T-GTAGGAAAAAAGCCTTTCTTGCGAA
* * * * * *
50247 ACCAAAGCTTTAGTGTGATGTATCCTAATGAGAAGACTATGTTTATGGTGTCGAATCCTGAAAAG
64 ACCAAAGCATCAATATGATGTATCCTAAGGAGAAAACTATGTTTATGGTGTCGAATCCTGAAAAG
** * * * *
50312 AGTAGGAACTAGTATAAATATTCATGTCTATCATATTTAAGAGCCAAACTTTGATTTTATCAAAG
129 AACAGGAACTAGTATAAATATTCATGTCTATCATATTTAAGAGACAAACTTCGATTCTATCAAAA
* *
50377 GTGGCGGAAAGAAAAGCTTTTATTCGGACACCAAAACATCAATGTCATGTATCCTAATGAAGGGA
194 ATGGCGGAAAGAAAAGCTTTTATTCGAACACCAAAACATCAATGTCATGTATCCTAATGAAGGGA
50442 ATGTGTTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTGTTA
259 ATGTGTTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTGTTA
50486 TGAGAATCGA
Statistics
Matches: 260, Mismatches: 39, Indels: 7
0.85 0.13 0.02
Matches are distributed among these distances:
316 238 0.92
317 20 0.08
318 2 0.01
ACGTcount: A:0.33, C:0.15, G:0.21, T:0.32
Consensus pattern (316 bp):
TGTCTCATTTGAGGCATGAACTTAGACTCTACAAAAATGTAGGAAAAAAGCCTTTCTTGCGAAAC
CAAAGCATCAATATGATGTATCCTAAGGAGAAAACTATGTTTATGGTGTCGAATCCTGAAAAGAA
CAGGAACTAGTATAAATATTCATGTCTATCATATTTAAGAGACAAACTTCGATTCTATCAAAAAT
GGCGGAAAGAAAAGCTTTTATTCGAACACCAAAACATCAATGTCATGTATCCTAATGAAGGGAAT
GTGTTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTGTTACTTTAATCCATTCA
Found at i:50708 original size:793 final size:795
Alignment explanation
Indices: 49373--50950 Score: 2192
Period size: 793 Copynumber: 2.0 Consensus size: 795
49363 ACGAAGATCA
* *
49373 TTACTTAAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAA
1 TTACTTAAATCCATGTATGTCTCATTTGAGGCACGAACTTAGACTCTACAAAAATTGGTGGGAAA
49438 AAGCCTTTCTTGTGAAACCAAAGCATCAGTGTGACGCATCCTAATGAGAAGACTATGTTTATGGT
66 AAGCCTTTCTTGTGAAACCAAAGCATCAGTGTGACGCATCCTAATGAGAAGACTATGTTTATGGT
* * * * * * * * *
49503 GCCGAATCGTTAAAAGAATAGGGATTAGTATGAGTATTCATGTTTGTCGTATTTAAGAGCCAAAC
131 GCCGAATCCTGAAAAGAATAGGAACTAGTATAAATATTCATGTCTATCATATTTAAGAGCCAAAC
* * * * *
49568 TTTGATTCTATCAATGACGGTGGAAAGAAAAGCTTTTCTTATGGCACTAAAACATCAATGTCATG
196 TTTGATTCTATCAAAGACGGCGGAAAGAAAAGCTTTTATTACGGCACCAAAACATCAATGTCATG
*
49633 TATCATAATGAAGGGATCGTGTTTTTGGCTTCCTAATCTTGAAAAGAATAGAGACTATAACGAGA
261 TATCATAATGAAGGGATCGTGTTTTTGGCTTCCCAATCTTGAAAAGAATAGAGACTATAACGAGA
* *
49698 AATCAATGCTTGTCGTATTTAAGGTATGAACTTTGATTTAAAGGAAAATAGGGTAAAGAAAAGAT
326 AATCAATGCTTGTCGTATTTAAGGTATAAACTTTGATTTAAAGAAAAATAGGGTAAAGAAAAGAT
* * * *
49763 TTTCACGCAAAAGAAAATCATTATTATCATTTATCCTAATGAGGGGAATATGTTTATAGTGCATA
391 TTCCACGCAAAAAAAAATCATTAATATCATTTATCCTAATGAGGAGAATATGTTTATAGTGCATA
* *
49828 ATCACAAGATGAATGAAGATCATTACTAGAATCCATGTTTGTCTTATTTGAGGCATGAACTTAGA
456 ATCACAAAATGAATGAAGATCATCACTAGAATCCATGTTTGTCTTATTTGAGGCATGAACTTAGA
* * *
49893 CTTTACAAAAATGTAAGGAAAAA-AGCCTTTCTTGCGAAACC-GAAGCATCAATA-TGATTTATC
521 CTTTACAAAAATGTAAGGAAAAATA-CATTTCTTGCG-AACCTAAAGCATCAATATTG-TGTATC
* * ** * *
49955 CTAAGGAGAAAACTATGTTTGTGGTGTCTAAT-CT-TGAAAAGAACAGGGATTGGTGTGAGTATT
583 CTAAGGAGAAAACTATGTTTATGGTGCCTAATCCTAAAAAAAGAACAGGGATTAGTATGAGTATT
** * * * *
50018 CATGTTTGTCATATTTTAGTGACAAACTTCGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTC
648 CATGTTTGTCATATTAAAGAGACAAACTTCAATTCTATCAAAAATAGTGGAAAAAAAAGCTTTTC
* * *
50083 TTGCAACACCAAAGCTTCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGCTTCCCAGTC
713 TTACAACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGCTTCCCAGCC
50148 TTGAAAGAATGGAGACTG
778 TTGAAAGAATGGAGACTG
* * *
50166 TTACTTTAATCCAT-TCATGTCTCATTTGAGGCATGAGCTTAGACTCTACAAAAATTGGTGGGAA
1 TTACTTAAATCCATGT-ATGTCTCATTTGAGGCACGAACTTAGACTCTACAAAAATTGGTGGGAA
* * * *
50230 AAAGCCTTTCTTGTGAAACCAAAGCTTTAGTGTGATGTATCCTAATGAGAAGACTATGTTTATGG
65 AAAGCCTTTCTTGTGAAACCAAAGCATCAGTGTGACGCATCCTAATGAGAAGACTATGTTTATGG
* *
50295 TGTCGAATCCTGAAAAGAGTAGGAACTAGTATAAATATTCATGTCTATCATATTTAAGAGCCAAA
130 TGCCGAATCCTGAAAAGAATAGGAACTAGTATAAATATTCATGTCTATCATATTTAAGAGCCAAA
* **
50360 CTTTGATTTTATCAAAGGTGGCGGAAAGAAAAGCTTTTATT-CGGACACCAAAACATCAATGTCA
195 CTTTGATTCTATCAAAGACGGCGGAAAGAAAAGCTTTTATTACGG-CACCAAAACATCAATGTCA
* * * * *
50424 TGTATCCTAATGAAGGGAAT-GTGTTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTGTTATG
259 TGTATCATAATGAAGGG-ATCGTGTTTTTGGCTTCCCAATCTTGAAAAGAATAGAGACTATAACG
* * * * *
50488 AG-AATCGATGGTTGTCTTATTTAAAGG-ATAAAGTTTGATTTTAAGAAAAATAGGGTAAAGAAA
323 AGAAATCAATGCTTGTCGTATTT-AAGGTATAAACTTTGATTTAAAGAAAAATAGGGTAAAGAAA
*
50551 AGATTTCCACGCAAAAAAAAATCATTAATATCATTTA-CCTTAATGAGGAGAATGTGTTTATAGT
387 AGATTTCCACGCAAAAAAAAATCATTAATATCATTTATCC-TAATGAGGAGAATATGTTTATAGT
* * ** *
50615 GCCTAATCACAAAATGAATGAAGATCGTCGTTAGAATCCATGTTTGTCTTATTTGAGGCATGACC
451 GCATAATCACAAAATGAATGAAGATCATCACTAGAATCCATGTTTGTCTTATTTGAGGCATGAAC
* * *
50680 TTAGACTTTA-AGAAAATTTGT-GGGAAAAATACATTTCTTGTGAACCTAAAGTATCAATATTGT
516 TTAGACTTTACA-AAAA--TGTAAGGAAAAATACATTTCTTGCGAACCTAAAGCATCAATATTGT
** * **
50743 GTATCCTAATTAGAAGACTATGTTTATGGTGCCTAATCCTCAAAAAAAAGAATGGGGATTAGTAT
578 GTATCCTAAGGAGAAAACTATGTTTATGGTGCCTAATCCT--AAAAAAAGAACAGGGATTAGTAT
* * *
50808 GAGTATTCATGTTTGTCCTATTAAAGAGACAAACTTTAATTCTTTCAAAAATAGTGGAAAAAAAA
641 GAGTATTCATGTTTGTCATATTAAAGAGACAAACTTCAATTCTATCAAAAATAGTGGAAAAAAAA
* *
50873 GCTTTTCTTATATCACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGCTT
706 GCTTTTCTTACAACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGCTT
50938 CCCAGCCTTGAAA
771 CCCAGCCTTGAAA
50951 AGAGTTGAGA
Statistics
Matches: 686, Mismatches: 84, Indels: 26
0.86 0.11 0.03
Matches are distributed among these distances:
791 3 0.00
792 184 0.27
793 344 0.50
794 10 0.01
797 145 0.21
ACGTcount: A:0.35, C:0.14, G:0.19, T:0.32
Consensus pattern (795 bp):
TTACTTAAATCCATGTATGTCTCATTTGAGGCACGAACTTAGACTCTACAAAAATTGGTGGGAAA
AAGCCTTTCTTGTGAAACCAAAGCATCAGTGTGACGCATCCTAATGAGAAGACTATGTTTATGGT
GCCGAATCCTGAAAAGAATAGGAACTAGTATAAATATTCATGTCTATCATATTTAAGAGCCAAAC
TTTGATTCTATCAAAGACGGCGGAAAGAAAAGCTTTTATTACGGCACCAAAACATCAATGTCATG
TATCATAATGAAGGGATCGTGTTTTTGGCTTCCCAATCTTGAAAAGAATAGAGACTATAACGAGA
AATCAATGCTTGTCGTATTTAAGGTATAAACTTTGATTTAAAGAAAAATAGGGTAAAGAAAAGAT
TTCCACGCAAAAAAAAATCATTAATATCATTTATCCTAATGAGGAGAATATGTTTATAGTGCATA
ATCACAAAATGAATGAAGATCATCACTAGAATCCATGTTTGTCTTATTTGAGGCATGAACTTAGA
CTTTACAAAAATGTAAGGAAAAATACATTTCTTGCGAACCTAAAGCATCAATATTGTGTATCCTA
AGGAGAAAACTATGTTTATGGTGCCTAATCCTAAAAAAAGAACAGGGATTAGTATGAGTATTCAT
GTTTGTCATATTAAAGAGACAAACTTCAATTCTATCAAAAATAGTGGAAAAAAAAGCTTTTCTTA
CAACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGCTTCCCAGCCTTG
AAAGAATGGAGACTG
Found at i:50975 original size:481 final size:472
Alignment explanation
Indices: 50183--52419 Score: 2596
Period size: 481 Copynumber: 4.7 Consensus size: 472
50173 AATCCATTCA
* * *
50183 TGTCTCATTTGAGGCATGAGCTTAGACTCTACAAAAATTGGTGGGAAAAAGCCTTTCTTGTGAAA
1 TGTCTCATTTGAGGCATGAACTTAGACTTTA-AAAAATTGGTGGGAAAAAACCTTTCTTGT-AAA
* * * * *
50248 CCAAAGCT-TTAGTGTGATGTATCCTAATGAGAAGACTATGTTTATGGTGTCGAATCCTGAAAAG
64 CCAAAG-TATCAATATGATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAG
* * * * * * * *
50312 AGTAGGAACTAGTATAAATATTCATGTCTATCATATTTAAGAGCCAAACTTTGATT-TTATCAAA
128 AATAGGGATTAGTATAAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTT-TCAAA
** * * *
50376 GGTGGCGGAAAGAAAAGCTTTTATTCGGACACCAAAACATCAATGTCATGTATCCTAATGAAGGG
192 AAT-GTGGAAAGAAAAGCTTTTCTT-AGACACCAAAACATCAATGTCATGTATCCTAATGAAGGG
* *
50441 AATGTGTTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTGTTATGAGAATCGATGGTTGTCTT
255 AATGTGTTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTATTATGAGAATCGATGGTCGTCTT
* * * * *
50506 ATTTAAAGG-ATAAAGTTTGATTTTAAGAAAAATAGGGTAAAGAAAAGATTTCCACGCAAAAAAA
320 ATTT-AAGGTATGAACTTTGATTTTAAGGAAAATAGGGTAAAGAAAAGATTTCCATGCAAAAGAA
50570 AATCATTAATATCATTTA-CCTTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAAT
384 AATCATTAATATCATTTATCC-TAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAAT
* ***
50634 GAAGATCGTCGTTAGAATCCATGTT
448 GAAGATCTTTACTAGAATCCATGTT
* * * * *
50659 TGTCTTATTTGAGGCATGACCTTAGACTTTAAGAAAATTTGTGGGAAAAATACATTTCTTGTGAA
1 TGTCTCATTTGAGGCATGAACTTAGACTTTAA-AAAATTGGTGGGAAAAA-ACCTTTCTTGTAAA
* *
50724 CCTAAAGTATCAATATTG-TGTATCCTAATTAGAAGACTATGTTTATGGTGCCTAATCCTCAAAA
64 CC-AAAGTATCAATA-TGATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCT----G
* * * * *
50788 AAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCCTATTAAAGAGACAAACTTTAATTCTTT
123 AAAAGAATAGGGATTAGTATAAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTTT
* * *
50853 CAAAAATAGTGGAAAAAAAAGCTTTTCTTATATCACCAAAGCATCAATGTCATGTATCCTAATGA
188 CAAAAAT-GTGGAAAGAAAAGCTTTTCTTAGA-CACCAAAACATCAATGTCATGTATCCTAATGA
** * * ** *
50918 AGGGAATGTGTTTTTGGCTTCCCAGCCTTGAAAAGAGTTGAGACTATTACAAGAATCGA-GGCTT
251 AGGGAATGTGTTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTATTATGAGAATCGATGG-TC
* * * * *
50982 GTCTTATTTAAGGTATGAACTTTGATTTTAAGGAAAATAGGGCAAAGGAAAGACCTT-CTTACAA
315 GTCTTATTTAAGGTATGAACTTTGATTTTAAGGAAAATAGGGTAAAGAAAAGA-TTTCCATGCAA
* * * **
51046 AAGAAAATCATCAATATCATTTATCCTAACGAGGAAAATGTGTTTATAGTGCCTAATCTTAAAAT
379 AAGAAAATCATTAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAAT
* * *
51111 GAATGATGACCTTTACTAGAATCTATGTT
444 GAATGAAGATCTTTACTAGAATCCATGTT
* *
51140 TGTCTCATTTGAGGCACGAACTTAGACTTTATAAAAATTGGTGGGAAAAAAGCCTTTCCTGTAAA
1 TGTCTCATTTGAGGCATGAACTTAGACTTTA-AAAAATTGGTGGGAAAAAA-CCTTTCTTGTAAA
* * * *
51205 TCCAAAGCATCAATATGATGTATCTTAATGAGTAGAATATGTTTATGGTGCCTAATCCTGAAAAG
64 -CCAAAGTATCAATATGATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAG
* * *
51270 AACAGGGATTAGTATAAGTGTTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCGTTCAAAA
128 AATAGGGATTAGTATAAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTTTCAAAA
* * * * * *
51335 ACGGTGTAAAGAAAAGCTTTTCTTACGACACCAAAGCTTCAATGTCATGCATCCTAATGAAGAGA
193 A-TGTGGAAAGAAAAGCTTTTCTTA-GACACCAAAACATCAATGTCATGTATCCTAATGAAGGGA
* * **
51400 A--TG----TGGCTTCCCAATCTTGAAAAGAGTGGAAACTATTATGAGAATCGATTCTCGTCTTA
256 ATGTGTTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTATTATGAGAATCGATGGTCGTCTTA
* * * *
51459 TTTAAGGTATGAATTTTGATTTAAAGGAAAATAAGGTAAAGAAAAGATTTTCATGCAAAAGAAAA
321 TTTAAGGTATGAACTTTGATTTTAAGGAAAATAGGGTAAAGAAAAGATTTCCATGCAAAAGAAAA
* * * * * *
51524 TCATTAATATCATTTATCCTAATAAGAAGAATGTGTTTATAATGCCTAATCACAAAAAGACTGAT
386 TCATTAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAA
*
51589 GATCTTTACTAGAATGCATGTT
451 GATCTTTACTAGAATCCATGTT
* * * *
51611 TGTCTCATTTGACGCATGAACTTAGACTTTACAAAATTGGT-GGAAAAAAGCTTTTCTTGCAAAA
1 TGTCTCATTTGAGGCATGAACTTAGACTTTAAAAAATTGGTGGGAAAAAA-CCTTTCTTG-TAAA
* * * * *
51675 CCAAAGCT-TCAATATGATATATCCTAATGAGAAGCCTATGTTTGTGCTGCCTAATCTTGGAAAA
64 CCAAAG-TATCAATATGATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCT-GAAAA
* * * *
51739 -AAT-GGTGATCAGTAT-GGTTATTCATGTTTGTCTTATTTAAGACATAAACTTTGATTCTTTCA
127 GAATAGG-GATTAGTATAAG-TATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTTTCA
* *** *
51801 AAAATGTTGGAAAGAAAAGCTATTCACGCGACACCAAAACATCAATGTCATGTATCCTAATGAAA
190 AAAATG-TGGAAAGAAAAGCTTTTC-TTAGACACCAAAACATCAATGTCATGTATCCTAATGAAG
* * * *
51866 GGAATGTGTTTTTGGCTTCCCAGTCTTGAAAAAAATAGAGACTATTATGAGAATCGATGGTCATC
253 GGAATGTGTTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTATTATGAGAATCGATGGTCGTC
* * * *
51931 TTCTTTAAGGTATGAACTTTGATTTCAAGGAAAATAGGGTAAAGAAAACATTTCCATGCTAAAGA
318 TTATTTAAGGTATGAACTTTGATTTTAAGGAAAATAGGGTAAAGAAAAGATTTCCATGCAAAAGA
* * * *
51996 AAATCATTAACATCATTTATCCTAATGAGGCGAATGTGTTTATTGAGCCTAATCACAAAA-GAAA
383 AAATCATTAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATG-AA
* *
52060 TGAAGATCATTACTAGAATCTATGTT
447 TGAAGATCTTTACTAGAATCCATGTT
* * * *** *
52086 TGTCTCATTTGAGGCATTAACTTAGACTTTACGAAAATTGGTGAGAGAAATGTCTTTCTTGCAAA
1 TGTCTCATTTGAGGCATGAACTTAGACTTTA-AAAAATTGGTGGGA-AAAAACCTTTCTTG-TAA
* * *
52151 ACCAAAGCATCAATATTG-TGTATCCTAATGACAAGACTATGCTTATGGTGCCTAATCCTGAAAA
63 ACCAAAGTATCAATA-TGATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAA
* *
52215 -AA-AGAGGATTAGTACAAGTATTCATGTTTGTCGTT-TTTAAGAGACAAACTTTGATTCTATCA
127 GAATAG-GGATTAGTATAAGTATTCATGTTTGTC-TTATTTAAGAGACAAACTTTGATTCTTTCA
* * *
52277 AAAATGATGGACAGAAAAGCTTTTCTTACGACACC-AAACATCAATGTCATGTAACGTAATGAAG
190 AAAATG-TGGAAAGAAAAGCTTTTCTTA-GACACCAAAACATCAATGTCATGTATCCTAATGAAG
* * * *
52341 GGAATGTGTTTTTGGCTTCCTAATCTTGAAAAGAATGGAGATTGTTATGAGAATCGATGCTCGTC
253 GGAATGTGTTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTATTATGAGAATCGATGGTCGTC
52406 TTATTTAAGGTATG
318 TTATTTAAGGTATG
52420 TGTTAGGATC
Statistics
Matches: 1492, Mismatches: 222, Indels: 95
0.82 0.12 0.05
Matches are distributed among these distances:
468 4 0.00
469 169 0.11
470 19 0.01
471 205 0.14
474 1 0.00
475 307 0.21
476 139 0.09
477 236 0.16
478 8 0.01
480 10 0.01
481 385 0.26
482 9 0.01
ACGTcount: A:0.36, C:0.14, G:0.18, T:0.32
Consensus pattern (472 bp):
TGTCTCATTTGAGGCATGAACTTAGACTTTAAAAAATTGGTGGGAAAAAACCTTTCTTGTAAACC
AAAGTATCAATATGATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAAT
AGGGATTAGTATAAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTTTCAAAAATG
TGGAAAGAAAAGCTTTTCTTAGACACCAAAACATCAATGTCATGTATCCTAATGAAGGGAATGTG
TTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTATTATGAGAATCGATGGTCGTCTTATTTAA
GGTATGAACTTTGATTTTAAGGAAAATAGGGTAAAGAAAAGATTTCCATGCAAAAGAAAATCATT
AATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCT
TTACTAGAATCCATGTT
Found at i:51963 original size:946 final size:950
Alignment explanation
Indices: 50183--52419 Score: 2798
Period size: 946 Copynumber: 2.3 Consensus size: 950
50173 AATCCATTCA
* *
50183 TGTCTCATTTGAGGCATGAGCTTAGACTCTACAAAAATTGGTGGG-AAAAAGCCTTTCTTGTGAA
1 TGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGT-AA
* * * * * *
50247 ACCAAAGCTTTAGTGTGATGTATCCTAATGAGAAGACTATGTTTATGGTGTCGAATCCTGAAAAG
65 ACCAAAGCATCAATATGATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAG
* * * * * * * * * *
50312 AGTAGGAACTAGTATAAATATTCATGTCTATCATATTTAAGAGCCAAACTTTGATTTTATCAAAG
130 A-AAGGGATTAGTATAAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAA
* * *
50377 GTGGCGGAAAGAAAAGCTTTTATT-CGGACACCAAAACATCAATGTCATGTATCCTAATGAAGGG
194 ATGGTGGAAAGAAAAGCTTTTCTTAC-GACACC-AAACATCAATGTCATGTATCCTAATGAAGGG
* *
50441 AATGTGTTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTGTTATGAGAATCGATGGTTGTCTT
257 AA-GTG---TTGGCTTCCCAATCTTGAAAAGAATGGAGACTGTTATGAGAATCGATGCTCGTCTT
* * *
50506 ATTTAAAGG-ATAAAGTTTGATTTTAAGAAAAATAGGGTAAAGAAAAGATTTCCACGCAAAAAAA
318 ATTT-AAGGTATGAAGTTTGATTTAAAGAAAAATAAGGTAAAGAAAAGATTTCCACGCAAAAAAA
* * * *
50570 AATCATTAATATCATTTACCTTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATG
382 AATCATTAATATCATTTACCTTAATAAGAAGAATGTGTTTATAATGCCTAATCACAAAAAGAATG
** * * * * *
50635 AAGATCGTCGTTAGAATCCATGTTTGTCTTATTTGAGGCATGACCTTAGACTTTAAGAAAATTTG
447 AAGATCGTCACTAGAATCCATGTTTGTCTCATTTGACGCATGAACTTAGACTTTAACAAAATTGG
** * *
50700 TGGGAAAAATACATTTCTTGTGAACCTAAAGTATCAATATTGTGTATCCTAATTAGAAGACTATG
512 TGGGAAAAATACATTTCTTGAAAACCTAAAGTATCAATATTGTATATCCTAATGAGAAGACTATG
* *
50765 TTTATGGTGCCTAATCCTCAAAAAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCCTATT
577 TTTATGCTGCCTAATCCT-AAAAAAAAGAATGGGGATCAGTATGAGTATTCATGTTTGTCCTATT
* * ** * *
50830 AAAGAGACAAACTTTAATTCTTTCAAAAATAGTGGAAAAAAAAGCTTTTCTTATATCACCAAAGC
641 AAAGACACAAACTTTAATTCTTTCAAAAATAGTGGAAAAAAAAGCTATTCCGAGATCACCAAAAC
* * * *
50895 ATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGCTTCCCAGCCTTGAAAAGAGTTGAG
706 ATCAATGTCATGTATCCTAATGAAAGGAATGTGTTTTTGGCTTCCCAGCCTTGAAAAAAATAGAG
** *
50960 ACTATTACAAGAATCGAGGCTTGTCTTATTTAAGGTATGAACTTTGATTTTAAGGAAAATAGGGC
771 ACTATTACAAGAATCGAGGCTCATCTTATTTAAGGTATGAACTTTGATTTCAAGGAAAATAGGGC
* *
51025 AAAGGAAAGAC-CTT-CTTACAAAAGAAAATCATCAATATCATTTATCCTAACGAGGAAAATGTG
836 AAA-GAAA-ACACTTCCATACAAAAGAAAATCATCAACATCATTTATCCTAACGAGGAAAATGTG
* ** * *
51088 TTTATAGTGCCTAATCTTAAAATG-AATGATGACCTTTACTAGAATCTATGTT
899 TTTATAGAGCCTAATCACAAAA-GAAATGAAGACCATTACTAGAATCTATGTT
* * *
51140 TGTCTCATTTGAGGCACGAACTTAGACTTTATAAAAATTGGTGGGAAAAAAGCCTTTCCTGTAAA
1 TGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGTAAA
* * *
51205 TCCAAAGCATCAATATGATGTATCTTAATGAGTAGAATATGTTTATGGTGCCTAATCCTGAAAAG
66 -CCAAAGCATCAATATGATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAG
*
51270 AACAGGGATTAGTATAAGTGTTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCGT-TCAAA
130 AA-AGGGATTAGTATAAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTC-TATCAAA
* * * * *
51334 AACGGTGTAAAGAAAAGCTTTTCTTACGACACCAAAGCTTCAATGTCATGCATCCTAATGAAGAG
193 AATGGTGGAAAGAAAAGCTTTTCTTACGACACCAAA-CATCAATGTCATGTATCCTAATGAAGGG
* * * *
51399 AA-TG-TGGCTTCCCAATCTTGAAAAGAGTGGAAACTATTATGAGAATCGATTCTCGTCTTATTT
257 AAGTGTTGGCTTCCCAATCTTGAAAAGAATGGAGACTGTTATGAGAATCGATGCTCGTCTTATTT
* * * * *
51462 AAGGTATGAATTTTGATTTAAAGGAAAATAAGGTAAAGAAAAGATTTTCATGCAAAAGAAAATCA
322 AAGGTATGAAGTTTGATTTAAAGAAAAATAAGGTAAAGAAAAGATTTCCACGCAAAAAAAAATCA
* *
51527 TTAATATCATTTATCC-TAATAAGAAGAATGTGTTTATAATGCCTAATCACAAAAAGACTGATGA
387 TTAATATCATTTA-CCTTAATAAGAAGAATGTGTTTATAATGCCTAATCACAAAAAGAATGAAGA
* * *
51591 TCTTTACTAGAATGCATGTTTGTCTCATTTGACGCATGAACTTAGACTTT-ACAAAATTGGT-GG
451 TCGTCACTAGAATCCATGTTTGTCTCATTTGACGCATGAACTTAGACTTTAACAAAATTGGTGGG
* *
51654 AAAAA-AGCTTTTCTTGCAAAACC-AAAGCT-TCAATA-TGATATATCCTAATGAGAAGCCTATG
516 AAAAATA-CATTTCTTG-AAAACCTAAAG-TATCAATATTG-TATATCCTAATGAGAAGACTATG
* *** * *
51715 TTTGTGCTGCCTAAT-CT-TGGAAAA-AATGGTGATCAGTATG-GTTATTCATGTTTGTCTTATT
577 TTTATGCTGCCTAATCCTAAAAAAAAGAATGGGGATCAGTATGAG-TATTCATGTTTGTCCTATT
* * * * *
51776 TAAGACATAAACTTTGATTCTTTCAAAAAT-GTTGGAAAGAAAAGCTATTCACGCGA-CACCAAA
641 AAAGACACAAACTTTAATTCTTTCAAAAATAG-TGGAAAAAAAAGCTATTC-CGAGATCACCAAA
*
51839 ACATCAATGTCATGTATCCTAATGAAAGGAATGTGTTTTTGGCTTCCCAGTCTTGAAAAAAATAG
704 ACATCAATGTCATGTATCCTAATGAAAGGAATGTGTTTTTGGCTTCCCAGCCTTGAAAAAAATAG
** *
51904 AGACTATTATGAGAATCGATGG-TCATCTTCTTTAAGGTATGAACTTTGATTTCAAGGAAAATAG
769 AGACTATTACAAGAATCGA-GGCTCATCTTATTTAAGGTATGAACTTTGATTTCAAGGAAAATAG
* * * * * * **
51968 GGTAAAGAAAACATTTCCATGCTAAAGAAAATCATTAACATCATTTATCCTAATGAGGCGAATGT
833 GGCAAAGAAAACACTTCCATACAAAAGAAAATCATCAACATCATTTATCCTAACGAGGAAAATGT
* *
52033 GTTTATTGAGCCTAATCACAAAAGAAATGAAGATCATTACTAGAATCTATGTT
898 GTTTATAGAGCCTAATCACAAAAGAAATGAAGACCATTACTAGAATCTATGTT
* * * * * * *
52086 TGTCTCATTTGAGGCATTAACTTAGACTTTACGAAAATTGGTGAGAGAAATGTCTTTCTTGCAAA
1 TGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTG-TAA
* *
52151 ACCAAAGCATCAATATTG-TGTATCCTAATGACAAGACTATGCTTATGGTGCCTAATCCTGAAAA
65 ACCAAAGCATCAATA-TGATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAA
*
52215 -AAAGAGGATTAGTACAAGTATTCATGTTTGTCGTT-TTTAAGAGACAAACTTTGATTCTATCAA
129 GAAAG-GGATTAGTATAAGTATTCATGTTTGTC-TTATTTAAGAGACAAACTTTGATTCTATCAA
* * * *
52278 AAATGATGGACAGAAAAGCTTTTCTTACGACACCAAACATCAATGTCATGTAACGTAATGAAGGG
192 AAATGGTGGAAAGAAAAGCTTTTCTTACGACACCAAACATCAATGTCATGTATCCTAATGAAGGG
* *
52343 AATGTGTTTTTGGCTTCCTAATCTTGAAAAGAATGGAGATTGTTATGAGAATCGATGCTCGTCTT
257 AA-GTG---TTGGCTTCCCAATCTTGAAAAGAATGGAGACTGTTATGAGAATCGATGCTCGTCTT
52408 ATTTAAGGTATG
318 ATTTAAGGTATG
52420 TGTTAGGATC
Statistics
Matches: 1102, Mismatches: 148, Indels: 67
0.84 0.11 0.05
Matches are distributed among these distances:
944 30 0.03
945 95 0.09
946 395 0.36
947 12 0.01
949 5 0.00
950 119 0.11
951 18 0.02
952 202 0.18
953 2 0.00
956 2 0.00
957 47 0.04
958 173 0.16
959 2 0.00
ACGTcount: A:0.36, C:0.14, G:0.18, T:0.32
Consensus pattern (950 bp):
TGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGTAAA
CCAAAGCATCAATATGATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGA
AAGGGATTAGTATAAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAAT
GGTGGAAAGAAAAGCTTTTCTTACGACACCAAACATCAATGTCATGTATCCTAATGAAGGGAAGT
GTTGGCTTCCCAATCTTGAAAAGAATGGAGACTGTTATGAGAATCGATGCTCGTCTTATTTAAGG
TATGAAGTTTGATTTAAAGAAAAATAAGGTAAAGAAAAGATTTCCACGCAAAAAAAAATCATTAA
TATCATTTACCTTAATAAGAAGAATGTGTTTATAATGCCTAATCACAAAAAGAATGAAGATCGTC
ACTAGAATCCATGTTTGTCTCATTTGACGCATGAACTTAGACTTTAACAAAATTGGTGGGAAAAA
TACATTTCTTGAAAACCTAAAGTATCAATATTGTATATCCTAATGAGAAGACTATGTTTATGCTG
CCTAATCCTAAAAAAAAGAATGGGGATCAGTATGAGTATTCATGTTTGTCCTATTAAAGACACAA
ACTTTAATTCTTTCAAAAATAGTGGAAAAAAAAGCTATTCCGAGATCACCAAAACATCAATGTCA
TGTATCCTAATGAAAGGAATGTGTTTTTGGCTTCCCAGCCTTGAAAAAAATAGAGACTATTACAA
GAATCGAGGCTCATCTTATTTAAGGTATGAACTTTGATTTCAAGGAAAATAGGGCAAAGAAAACA
CTTCCATACAAAAGAAAATCATCAACATCATTTATCCTAACGAGGAAAATGTGTTTATAGAGCCT
AATCACAAAAGAAATGAAGACCATTACTAGAATCTATGTT
Found at i:52762 original size:19 final size:19
Alignment explanation
Indices: 52738--52793 Score: 76
Period size: 20 Copynumber: 2.9 Consensus size: 19
52728 TATATCGATA
52738 CATTGTATCGATACATGTT
1 CATTGTATCGATACATGTT
**
52757 CATTGTATCGATACACACTT
1 CATTGTATCGATACA-TGTT
*
52777 AATTGTATCGATACATG
1 CATTGTATCGATACATG
52794 AAACTGGCAA
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
19 15 0.48
20 16 0.52
ACGTcount: A:0.30, C:0.18, G:0.14, T:0.38
Consensus pattern (19 bp):
CATTGTATCGATACATGTT
Found at i:53091 original size:33 final size:33
Alignment explanation
Indices: 53053--53119 Score: 134
Period size: 33 Copynumber: 2.0 Consensus size: 33
53043 CCTATAAATT
53053 TGAGTTTCCAACAACTGAACAAGAAGAGAACCA
1 TGAGTTTCCAACAACTGAACAAGAAGAGAACCA
53086 TGAGTTTCCAACAACTGAACAAGAAGAGAACCA
1 TGAGTTTCCAACAACTGAACAAGAAGAGAACCA
53119 T
1 T
53120 TAAGAAACAT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 34 1.00
ACGTcount: A:0.45, C:0.21, G:0.18, T:0.16
Consensus pattern (33 bp):
TGAGTTTCCAACAACTGAACAAGAAGAGAACCA
Found at i:54551 original size:27 final size:27
Alignment explanation
Indices: 54512--54570 Score: 100
Period size: 27 Copynumber: 2.2 Consensus size: 27
54502 TGAAGATGAT
54512 GATGATGACAATGATAAAGTTGACTCA
1 GATGATGACAATGATAAAGTTGACTCA
* *
54539 GATGATGATAATGATGAAGTTGACTCA
1 GATGATGACAATGATAAAGTTGACTCA
54566 GATGA
1 GATGA
54571 AGAAATGGAT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.39, C:0.08, G:0.25, T:0.27
Consensus pattern (27 bp):
GATGATGACAATGATAAAGTTGACTCA
Found at i:56598 original size:32 final size:32
Alignment explanation
Indices: 56562--56638 Score: 127
Period size: 32 Copynumber: 2.4 Consensus size: 32
56552 GGCTCAATGT
* *
56562 ACAGTGATGAATAGTGATGTATCGATACATGA
1 ACAGTGATGAACAGTGATATATCGATACATGA
56594 ACAGTGATGAACAGTGATATATCGATACATGA
1 ACAGTGATGAACAGTGATATATCGATACATGA
*
56626 ATAGTGATGAACA
1 ACAGTGATGAACA
56639 ATGAAAATGA
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
32 42 1.00
ACGTcount: A:0.40, C:0.10, G:0.23, T:0.26
Consensus pattern (32 bp):
ACAGTGATGAACAGTGATATATCGATACATGA
Found at i:56688 original size:13 final size:13
Alignment explanation
Indices: 56670--56694 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
56660 TGCCAATGCT
56670 ATGTATCGATACA
1 ATGTATCGATACA
56683 ATGTATCGATAC
1 ATGTATCGATAC
56695 TTAGCAAAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:56815 original size:21 final size:21
Alignment explanation
Indices: 56775--56815 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
56765 GTCAACCTTG
*
56775 TGTATTGATACCAATAGTATA
1 TGTATTGATACCAACAGTATA
56796 TGTATTGATA-CAACACGTAT
1 TGTATTGATACCAACA-GTAT
56816 TTTTACTTAG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 4 0.22
21 14 0.78
ACGTcount: A:0.37, C:0.12, G:0.15, T:0.37
Consensus pattern (21 bp):
TGTATTGATACCAACAGTATA
Found at i:61054 original size:20 final size:21
Alignment explanation
Indices: 61029--61067 Score: 71
Period size: 20 Copynumber: 1.9 Consensus size: 21
61019 ATTTTCCAAA
61029 ATGTATCGATACAT-TGAATG
1 ATGTATCGATACATATGAATG
61049 ATGTATCGATACATATGAA
1 ATGTATCGATACATATGAA
61068 AAACCTAGAT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 14 0.78
21 4 0.22
ACGTcount: A:0.38, C:0.10, G:0.18, T:0.33
Consensus pattern (21 bp):
ATGTATCGATACATATGAATG
Done.