genome.fa.s1747.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1747
Parameters: 2 7 7 80 10 50 1000
Length:  62252

Tables:   1   

This is table  1  of  1  ( 40 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
459--526	31	2.1	33	84	10	88	38	16	13	32	1.87
1690--1839	50	2.9	50	90	3	219	41	13	17	28	1.87
2190--2292	39	2.6	40	83	4	129	47	7	21	23	1.76
2190--2317	40	3.2	40	81	4	143	46	9	21	22	1.80
2268--2525	105	2.4	105	82	4	288	43	12	24	20	1.86
3132--3221	40	2.2	40	84	0	117	46	12	21	20	1.82
7023--7179	83	1.9	83	80	5	183	42	19	19	19	1.90
8495--8531	18	2.1	18	100	0	74	27	18	5	48	1.70
9311--9352	13	3.0	14	83	16	52	2	19	0	78	0.86
9301--9338	19	2.0	20	90	10	62	2	15	0	81	0.80
11234--11282	13	4.2	13	70	24	54	34	16	16	32	1.91
11234--11302	34	2.1	32	89	10	104	33	15	15	34	1.90
11382--11406	13	1.9	13	100	0	50	36	16	16	32	1.90
11948--12135	94	2.0	92	92	6	317	29	27	1	42	1.62
13474--13547	20	3.7	20	92	1	112	16	27	39	17	1.91
20111--20159	13	4.2	13	70	24	54	34	16	16	32	1.91
20111--20179	34	2.1	32	89	10	104	33	15	15	34	1.90
24325--24350	13	2.0	13	100	0	52	30	15	15	38	1.88
26877--26914	13	2.9	13	96	0	67	31	15	18	34	1.92
28977--29007	15	2.1	15	93	0	53	12	22	16	48	1.80
30809--30853	21	2.1	21	84	8	56	22	20	4	53	1.63
36275--36314	11	3.5	11	80	12	53	0	20	0	80	0.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36275--36318	13	3.5	13	87	6	65	0	20	0	79	0.73
36640--36681	15	3.1	13	86	13	50	73	2	0	23	0.94
36883--37500	167	3.7	164	78	7	570	48	10	10	29	1.71
39937--40134	97	2.1	97	84	2	256	38	12	19	29	1.88
42807--42856	20	2.5	21	77	9	59	42	10	16	32	1.81
42913--43049	52	2.7	52	85	6	190	29	13	12	43	1.81
57806--57846	20	2.0	21	90	9	66	41	24	17	17	1.89
58719--58768	1	50.0	1	93	0	73	94	0	2	4	0.38
58716--58768	20	2.8	20	91	8	85	88	0	3	7	0.61
58773--58829	21	2.7	21	97	0	105	33	10	19	36	1.86
58885--58952	19	3.9	19	78	21	85	35	11	14	38	1.83
58906--58930	13	1.9	13	100	0	50	36	16	16	32	1.90
58887--58949	32	2.0	32	96	0	117	34	12	15	36	1.86
58992--59017	13	2.0	13	100	0	52	30	15	15	38	1.88
58972--59038	33	2.0	33	88	0	98	25	14	16	43	1.86
61640--61712	28	2.6	30	87	8	100	24	30	19	26	1.98
61372--61784	212	1.9	213	94	2	722	28	25	13	32	1.94
61487--61784	52	5.7	52	68	17	188	27	24	14	33	1.94

Tables:   1

The End!