genome.fa.s1748.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1748
Parameters: 2 7 7 80 10 50 1000
Length:  63510

Tables:   1   

This is table  1  of  1  ( 65 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3255--3348	1	94.0	1	76	0	89	88	11	0	0	0.52
3255--3347	16	5.6	16	86	6	132	88	11	0	0	0.52
3253--3348	40	2.5	38	85	8	131	87	12	0	0	0.54
3255--3348	45	2.1	43	86	13	120	88	11	0	0	0.52
4731--4963	29	8.0	29	80	6	247	28	27	17	26	1.97
4727--4954	57	3.9	58	78	7	239	29	27	17	25	1.97
4731--4954	88	2.6	87	85	4	283	29	27	17	25	1.98
4727--4963	117	2.0	117	82	4	291	28	27	16	27	1.97
4939--5030	35	2.7	36	80	8	111	21	28	10	39	1.87
5159--5243	43	2.0	43	92	0	143	28	23	18	29	1.98
5108--5290	92	2.0	94	91	3	298	27	23	16	32	1.96
5201--5349	52	2.8	54	80	3	176	26	23	15	34	1.94
6156--6180	13	1.9	13	100	0	50	36	16	16	32	1.90
6222--6246	13	1.9	13	100	0	50	32	16	16	36	1.90
6235--6429	52	3.9	52	80	9	251	30	17	17	33	1.94
6255--6448	98	2.0	98	100	0	388	29	17	18	35	1.94
6305--6448	46	3.0	46	75	11	171	29	16	18	36	1.93
13656--13710	24	2.2	25	83	3	67	45	1	0	52	1.11
14260--14291	17	1.9	17	93	6	57	46	0	0	53	1.00
14253--14301	14	3.3	14	79	20	55	51	0	0	48	1.00
17358--17390	13	2.5	13	95	0	57	48	0	3	48	1.17
18177--18219	18	2.3	19	88	4	61	25	0	4	69	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18292--18316	5	5.0	5	100	0	50	40	0	0	60	0.97
18482--18552	18	4.1	17	78	10	63	38	0	0	61	0.96
18478--18553	17	4.3	18	75	18	61	39	0	0	60	0.97
19683--19729	23	2.0	24	91	4	78	53	6	0	40	1.27
24651--24711	19	3.3	18	78	13	61	52	1	0	45	1.10
31543--31578	2	18.5	2	88	5	56	47	2	0	50	1.15
33138--33168	16	1.9	16	93	0	53	48	0	3	48	1.17
33747--33804	30	2.0	30	83	10	75	46	1	0	51	1.11
33979--34027	14	3.4	15	71	18	50	30	0	2	67	1.02
34026--34071	17	2.4	19	76	16	51	65	0	0	34	0.93
34040--34095	20	2.8	19	75	20	60	60	0	0	39	0.97
34192--34270	19	4.0	21	77	16	71	39	0	0	60	0.97
34221--34303	41	2.0	41	81	9	98	43	0	0	56	0.99
34769--34811	20	2.2	20	87	8	61	48	0	0	51	1.00
35045--35115	30	2.3	31	79	13	76	35	1	1	61	1.13
37889--37927	2	19.5	2	89	0	60	48	5	0	46	1.24
39422--39486	2	32.5	2	100	0	130	50	0	0	49	1.00
40660--40701	22	1.9	22	85	0	57	52	7	2	38	1.42
41188--41219	12	2.7	12	95	0	55	34	9	34	21	1.86
42381--42428	3	16.0	3	95	0	87	64	2	0	33	1.05
47801--47851	20	2.5	20	77	0	57	56	0	1	41	1.10
47990--48052	24	2.6	25	82	12	78	41	1	3	53	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48015--48073	9	6.1	9	75	14	55	38	0	0	61	0.96
47991--48065	14	5.2	14	74	4	60	38	1	2	57	1.21
47991--48073	20	4.3	19	77	9	78	38	1	2	57	1.19
48413--48481	32	2.2	31	82	12	86	52	0	2	44	1.16
48735--48768	16	2.0	18	88	11	54	50	0	0	50	1.00
48744--48799	23	2.4	24	82	8	71	46	0	0	53	1.00
48727--48802	19	3.8	19	75	17	66	47	1	0	51	1.09
48735--48817	23	3.6	23	76	11	64	49	0	1	49	1.08
49235--49282	14	3.7	13	78	15	55	41	0	0	58	0.98
49722--49766	20	2.2	19	81	14	54	71	0	26	2	0.98
50686--50756	21	3.4	21	80	1	72	50	4	9	35	1.55
51702--51744	22	2.0	22	90	9	70	39	2	0	58	1.11
52520--52577	21	2.8	21	84	7	82	37	15	13	32	1.87
52613--52712	19	5.9	19	74	25	107	35	12	15	38	1.84
52615--52709	32	3.0	32	98	0	181	34	12	15	36	1.86
52634--52690	13	3.9	13	76	24	60	35	14	15	35	1.88
52752--52777	13	2.0	13	100	0	52	30	15	15	38	1.88
52732--52798	33	2.0	33	88	0	98	25	14	16	43	1.86
55246--55315	27	2.6	26	84	11	79	25	34	20	20	1.96
55305--55472	51	3.3	51	79	1	201	27	26	11	33	1.92
62268--62301	17	2.0	17	88	0	50	50	17	26	5	1.69

Tables:   1

The End!