Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold1749
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 365996
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 1 of 3
Found at i:398 original size:52 final size:52
Alignment explanation
Indices: 250--378 Score: 249
Period size: 52 Copynumber: 2.5 Consensus size: 52
240 CGAAATATGA
250 AAATTTGCCTGCATGTATCGATACATTTCATAGTGTATCGATACATCTTGGC
1 AAATTTGCCTGCATGTATCGATACATTTCATAGTGTATCGATACATCTTGGC
*
302 AAATTTGCCTGCATGTATCGATACATTTTATAGTGTATCGATACATCTTGGC
1 AAATTTGCCTGCATGTATCGATACATTTCATAGTGTATCGATACATCTTGGC
354 AAATTTGCCTGCATGTATCGATACA
1 AAATTTGCCTGCATGTATCGATACA
379 AAGATCAGTG
Statistics
Matches: 76, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
52 76 1.00
ACGTcount: A:0.28, C:0.19, G:0.17, T:0.36
Consensus pattern (52 bp):
AAATTTGCCTGCATGTATCGATACATTTCATAGTGTATCGATACATCTTGGC
Found at i:405 original size:13 final size:13
Alignment explanation
Indices: 387--411 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
377 CAAAGATCAG
387 TGTATCGATACAA
1 TGTATCGATACAA
400 TGTATCGATACA
1 TGTATCGATACA
412 TTTGAGTAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:453 original size:86 final size:84
Alignment explanation
Indices: 314--497 Score: 212
Period size: 86 Copynumber: 2.2 Consensus size: 84
304 ATTTGCCTGC
* * * *
314 ATGTATCGATACATTTTATAGTGTATCGATACATCTTGGCAAATTTGCCTGCA-TGTATCGATAC
1 ATGTATCGATACATTTGATAATGTATCGATACATCTTGGC-AAGTAGCCTGCATTGTATCGATAC
378 AAAGA-TCAGTGTATCGATACA
65 AAA-ACTCA-TGTATCGATACA
* *
399 ATGTATCGATACATTTGAGTAATGTATCGATACATTTTTTGGC-AGTAGCTTGCATTGTATCGAT
1 ATGTATCGATACATTTGA-TAATGTATCGATACA--TCTTGGCAAGTAGCCTGCATTGTATCGAT
*
463 ACAAAACTTATGTATCGATACA
63 ACAAAACTCATGTATCGATACA
* *
485 TTGTATTGATACA
1 ATGTATCGATACA
498 ACACTTATGT
Statistics
Matches: 85, Mismatches: 9, Indels: 9
0.83 0.09 0.09
Matches are distributed among these distances:
85 17 0.20
86 46 0.54
87 16 0.19
88 6 0.07
ACGTcount: A:0.32, C:0.15, G:0.17, T:0.36
Consensus pattern (84 bp):
ATGTATCGATACATTTGATAATGTATCGATACATCTTGGCAAGTAGCCTGCATTGTATCGATACA
AAACTCATGTATCGATACA
Found at i:478 original size:19 final size:18
Alignment explanation
Indices: 454--551 Score: 72
Period size: 19 Copynumber: 5.8 Consensus size: 18
444 TAGCTTGCAT
454 TGTATCGATACAAAACTTA
1 TGTATCGATAC-AAACTTA
473 TGTATCGATAC--A--T-
1 TGTATCGATACAAACTTA
*
486 TGTATTGATACAACACTTA
1 TGTATCGATACAA-ACTTA
505 TGTATCGATAC--A-TTA
1 TGTATCGATACAAACTTA
520 --TATCGATACAACACTTTA
1 TGTATCGATACAA-AC-TTA
*
538 TGTATCAATACAAA
1 TGTATCGATACAAA
552 TTGTTGAAAT
Statistics
Matches: 63, Mismatches: 3, Indels: 26
0.68 0.03 0.28
Matches are distributed among these distances:
13 19 0.30
14 1 0.02
15 3 0.05
16 4 0.06
18 4 0.06
19 22 0.35
20 10 0.16
ACGTcount: A:0.39, C:0.16, G:0.10, T:0.35
Consensus pattern (18 bp):
TGTATCGATACAAACTTA
Found at i:496 original size:32 final size:32
Alignment explanation
Indices: 451--549 Score: 153
Period size: 32 Copynumber: 3.1 Consensus size: 32
441 CAGTAGCTTG
*
451 CATTGTATCGATACAAAACTTATGTATCGATA
1 CATTGTATCGATACAACACTTATGTATCGATA
*
483 CATTGTATTGATACAACACTTATGTATCGATA
1 CATTGTATCGATACAACACTTATGTATCGATA
* *
515 CATTATATCGATACAACACTTTATGTATCAATA
1 CATTGTATCGATACAACAC-TTATGTATCGATA
548 CA
1 CA
550 AATTGTTGAA
Statistics
Matches: 61, Mismatches: 5, Indels: 1
0.91 0.07 0.01
Matches are distributed among these distances:
32 47 0.77
33 14 0.23
ACGTcount: A:0.37, C:0.17, G:0.10, T:0.35
Consensus pattern (32 bp):
CATTGTATCGATACAACACTTATGTATCGATA
Found at i:1672 original size:20 final size:20
Alignment explanation
Indices: 1627--1698 Score: 58
Period size: 20 Copynumber: 3.6 Consensus size: 20
1617 CGTTGAACTC
* * *
1627 AGTGTATGGATACATTTATGA
1 AGTGTATTGATACATTCA-CA
1648 A-TGTATTGATACATTCTA-A
1 AGTGTATTGATACATTC-ACA
* * *
1667 ATTGTATCGAAACATTCACA
1 AGTGTATTGATACATTCACA
1687 AGTGTATTGATA
1 AGTGTATTGATA
1699 TGAATGAGGG
Statistics
Matches: 41, Mismatches: 7, Indels: 7
0.75 0.13 0.13
Matches are distributed among these distances:
19 3 0.07
20 36 0.88
21 2 0.05
ACGTcount: A:0.36, C:0.10, G:0.17, T:0.38
Consensus pattern (20 bp):
AGTGTATTGATACATTCACA
Found at i:1786 original size:20 final size:21
Alignment explanation
Indices: 1741--1787 Score: 69
Period size: 20 Copynumber: 2.3 Consensus size: 21
1731 GCCAACAAAT
* *
1741 TGTATCAATACATTCATATGA
1 TGTATCAATACATTCACATAA
1762 TGTATCAATACA-TCACATAA
1 TGTATCAATACATTCACATAA
1782 TGTATC
1 TGTATC
1788 GATAAATTTT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
20 12 0.50
21 12 0.50
ACGTcount: A:0.38, C:0.17, G:0.09, T:0.36
Consensus pattern (21 bp):
TGTATCAATACATTCACATAA
Found at i:4281 original size:20 final size:20
Alignment explanation
Indices: 4256--4322 Score: 81
Period size: 20 Copynumber: 3.6 Consensus size: 20
4246 ATATAGAGAA
*
4256 TGTATCGATAGATTATTCAT
1 TGTATCGATACATTATTCAT
4276 TGTATCGATACA--A-T--T
1 TGTATCGATACATTATTCAT
4291 TGTATCGATACATTATTCAT
1 TGTATCGATACATTATTCAT
*
4311 TGTATCAATACA
1 TGTATCGATACA
4323 ATCTGGAAAA
Statistics
Matches: 40, Mismatches: 2, Indels: 10
0.77 0.04 0.19
Matches are distributed among these distances:
15 13 0.32
17 2 0.05
18 2 0.05
20 23 0.57
ACGTcount: A:0.33, C:0.13, G:0.12, T:0.42
Consensus pattern (20 bp):
TGTATCGATACATTATTCAT
Found at i:4306 original size:35 final size:35
Alignment explanation
Indices: 4256--4324 Score: 120
Period size: 35 Copynumber: 2.0 Consensus size: 35
4246 ATATAGAGAA
* *
4256 TGTATCGATAGATTATTCATTGTATCGATACAATT
1 TGTATCGATACATTATTCATTGTATCAATACAATT
4291 TGTATCGATACATTATTCATTGTATCAATACAAT
1 TGTATCGATACATTATTCATTGTATCAATACAAT
4325 CTGGAAAACC
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
35 32 1.00
ACGTcount: A:0.33, C:0.13, G:0.12, T:0.42
Consensus pattern (35 bp):
TGTATCGATACATTATTCATTGTATCAATACAATT
Found at i:10404 original size:20 final size:20
Alignment explanation
Indices: 10360--10432 Score: 76
Period size: 20 Copynumber: 3.6 Consensus size: 20
10350 GTTGAACTCA
* * * *
10360 ATGTATCAATACATTTATAG
1 ATGTATCGATACATTCAAAT
10380 ATGTATCGATACATTCCAAAT
1 ATGTATCGATACATT-CAAAT
* *
10401 -TGTATCGATACATTTACAT
1 ATGTATCGATACATTCAAAT
10420 ATGTATCGATACA
1 ATGTATCGATACA
10433 AATGAGGGTT
Statistics
Matches: 45, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
19 3 0.07
20 40 0.89
21 2 0.04
ACGTcount: A:0.37, C:0.15, G:0.11, T:0.37
Consensus pattern (20 bp):
ATGTATCGATACATTCAAAT
Found at i:12178 original size:157 final size:155
Alignment explanation
Indices: 11893--12245 Score: 386
Period size: 157 Copynumber: 2.3 Consensus size: 155
11883 TCTAAGATTC
** * * * * * * *
11893 AGTTCAAGGGAAGATTACTAAAATGCTCTTTAGGTATATCTTCAACATGAAAGTATCTTGGTAAC
1 AGTTCAAGTAAAGATTACTAAAATACCCTTTAGGTATACCTTCAACATAAAAGCATCCTAGTAAC
** * * *
11958 TAAAAGGCATGAAAATGATATGAAAAAGGACAAACATATCCTAAGCGCACACCTTTGGCATAAAA
66 TAAAAGGCACAAAAATGACATGAAAAAGGACAAACATATCCTAAACGCACACCTTTGACATAAAA
* *
12023 GTGACCTACTGATTACCTAGGACTT
131 ATGACCTACTGACTACCTAGGACTT
*
12048 AGTTCAAGTAAAGATTACCAAAATACCCTTCTA-GTATACCTTCAACATAAAAGCATCCTAGTAA
1 AGTTCAAGTAAAGATTACTAAAATACCCTT-TAGGTATACCTTCAACATAAAAGCATCCTAGTAA
* * ** * * * *
12112 TCTTAAAGGGCACAAAAATGACATGAAAAATGATGAGCCTATCCTAAATGCACACCTTTGATATA
65 -C-TAAAAGGCACAAAAATGACATGAAAAAGGACAAACATATCCTAAACGCACACCTTTGACATA
*
12177 AAAATGACCTAGTGACTACCTAGGACTT
128 AAAATGACCTACTGACTACCTAGGACTT
* * * *
12205 GGTTCTTAGTAAA-ATTACTAAAATATCCTTAAGGTATACCT
1 AGTTC-AAGTAAAGATTACTAAAATACCCTTTAGGTATACCT
12246 ACGACATGAA
Statistics
Matches: 162, Mismatches: 31, Indels: 8
0.81 0.15 0.04
Matches are distributed among these distances:
155 51 0.31
156 4 0.02
157 101 0.62
158 6 0.04
ACGTcount: A:0.39, C:0.18, G:0.15, T:0.27
Consensus pattern (155 bp):
AGTTCAAGTAAAGATTACTAAAATACCCTTTAGGTATACCTTCAACATAAAAGCATCCTAGTAAC
TAAAAGGCACAAAAATGACATGAAAAAGGACAAACATATCCTAAACGCACACCTTTGACATAAAA
ATGACCTACTGACTACCTAGGACTT
Found at i:13462 original size:17 final size:17
Alignment explanation
Indices: 13440--13478 Score: 69
Period size: 17 Copynumber: 2.3 Consensus size: 17
13430 ATCATTGTTT
13440 TCATGCTTGGCCTTTCA
1 TCATGCTTGGCCTTTCA
13457 TCATGCTTGGCCTTTCA
1 TCATGCTTGGCCTTTCA
*
13474 ACATG
1 TCATG
13479 GAATGAAATC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.15, C:0.28, G:0.18, T:0.38
Consensus pattern (17 bp):
TCATGCTTGGCCTTTCA
Found at i:16522 original size:20 final size:21
Alignment explanation
Indices: 16489--16548 Score: 65
Period size: 20 Copynumber: 3.0 Consensus size: 21
16479 ATTAATATTT
16489 TAATAT-TTTATATTTAATAAA
1 TAATATATTTATA-TTAATAAA
16510 -AATATATTT-TATTAATAAA
1 TAATATATTTATATTAATAAA
*
16529 TAATA-ATTTAAATTGAATAA
1 TAATATATTTATATT-AATAA
16549 TGCTAATCTG
Statistics
Matches: 34, Mismatches: 1, Indels: 8
0.79 0.02 0.19
Matches are distributed among these distances:
19 12 0.35
20 14 0.41
21 8 0.24
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.47
Consensus pattern (21 bp):
TAATATATTTATATTAATAAA
Found at i:18694 original size:31 final size:31
Alignment explanation
Indices: 18656--18720 Score: 130
Period size: 31 Copynumber: 2.1 Consensus size: 31
18646 TATGAATATA
18656 TTAAAATTTAAATATTATAACTTATTAAAAC
1 TTAAAATTTAAATATTATAACTTATTAAAAC
18687 TTAAAATTTAAATATTATAACTTATTAAAAC
1 TTAAAATTTAAATATTATAACTTATTAAAAC
18718 TTA
1 TTA
18721 TCCCATTTCA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 34 1.00
ACGTcount: A:0.51, C:0.06, G:0.00, T:0.43
Consensus pattern (31 bp):
TTAAAATTTAAATATTATAACTTATTAAAAC
Found at i:19823 original size:28 final size:33
Alignment explanation
Indices: 19805--19870 Score: 105
Period size: 33 Copynumber: 2.0 Consensus size: 33
19795 ATTTAAAAAT
19805 AATATAAAATATAATAAAATATATAAATATATG
1 AATATAAAATATAATAAAATATATAAATATATG
* *
19838 AATATAAAATATGATATAAATATATTAATATAT
1 AATATAAAATATAATA-AAATATATAAATATAT
19871 TAAAATTTAT
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
33 15 0.50
34 15 0.50
ACGTcount: A:0.61, C:0.00, G:0.03, T:0.36
Consensus pattern (33 bp):
AATATAAAATATAATAAAATATATAAATATATG
Found at i:19834 original size:8 final size:8
Alignment explanation
Indices: 19805--19892 Score: 70
Period size: 8 Copynumber: 10.1 Consensus size: 8
19795 ATTTAAAAAT
19805 AATATA-A
1 AATATATA
19812 AATATAATAA
1 AATAT-AT-A
19822 AATATATA
1 AATATATA
*
19830 AATATATG
1 AATATATA
*
19838 AATATAAA
1 AATATATA
19846 ATATGATATA
1 A-AT-ATATA
*
19856 AATATATT
1 AATATATA
19864 AATATATTAA
1 AATATA-T-A
19874 AATTTATATA
1 AA--TATATA
19884 AATATATA
1 AATATATA
19892 A
1 A
19893 TACGTTAAAC
Statistics
Matches: 66, Mismatches: 6, Indels: 17
0.74 0.07 0.19
Matches are distributed among these distances:
7 5 0.08
8 33 0.50
9 7 0.11
10 16 0.24
11 1 0.02
12 4 0.06
ACGTcount: A:0.60, C:0.00, G:0.02, T:0.38
Consensus pattern (8 bp):
AATATATA
Found at i:19854 original size:26 final size:23
Alignment explanation
Indices: 19798--19894 Score: 85
Period size: 26 Copynumber: 4.0 Consensus size: 23
19788 AAAAAAAATT
19798 TAAAAATAATATAAA-ATAT-A-A
1 TAAAAAT-ATATAAATATATAATA
19819 T-AAAATATATAAATATATGAATA
1 TAAAAATATATAAATATAT-AATA
19842 TAAAATATGATATAAATATATTAATA
1 TAAAA-AT-ATATAAATATA-TAATA
19868 TATTAAAATTTATATAAATATATAATA
1 TA--AAAA--TATATAAATATATAATA
19895 CGTTAAACAA
Statistics
Matches: 64, Mismatches: 0, Indels: 18
0.78 0.00 0.22
Matches are distributed among these distances:
19 7 0.11
20 9 0.14
21 1 0.02
22 1 0.02
23 2 0.03
24 3 0.05
25 2 0.03
26 17 0.27
27 7 0.11
28 14 0.22
29 1 0.02
ACGTcount: A:0.61, C:0.00, G:0.02, T:0.37
Consensus pattern (23 bp):
TAAAAATATATAAATATATAATA
Found at i:19882 original size:28 final size:26
Alignment explanation
Indices: 19805--19894 Score: 96
Period size: 28 Copynumber: 3.4 Consensus size: 26
19795 ATTTAAAAAT
*
19805 AATATAAAATATAATAAAA--TATATA
1 AATATATAATAT-ATAAAATTTATATA
* *
19830 AATATATGA-ATATAAAATATGATATA
1 AATATATAATATATAAAAT-TTATATA
19856 AATATATTAATATATTAAAATTTATATA
1 AATATA-TAATATA-TAAAATTTATATA
19884 AATATATAATA
1 AATATATAATA
19895 CGTTAAACAA
Statistics
Matches: 54, Mismatches: 5, Indels: 10
0.78 0.07 0.14
Matches are distributed among these distances:
23 6 0.11
24 2 0.04
25 7 0.13
26 11 0.20
27 7 0.13
28 15 0.28
29 6 0.11
ACGTcount: A:0.60, C:0.00, G:0.02, T:0.38
Consensus pattern (26 bp):
AATATATAATATATAAAATTTATATA
Found at i:19886 original size:10 final size:10
Alignment explanation
Indices: 19801--19891 Score: 60
Period size: 10 Copynumber: 9.9 Consensus size: 10
19791 AAAAATTTAA
19801 AAATA-ATAT
1 AAATATATAT
19810 AAA-ATATAAT
1 AAATATAT-AT
19820 AAA-ATATAT
1 AAATATATAT
19829 -AA-ATATAT
1 AAATATATAT
*
19837 -GA-ATATA-
1 AAATATATAT
19844 AAATATGATAT
1 AAATAT-ATAT
19855 AAATATAT-T
1 AAATATATAT
19864 -AATATAT-T
1 AAATATATAT
*
19872 AAAATTTATAT
1 -AAATATATAT
19883 AAATATATA
1 AAATATATA
19892 ATACGTTAAA
Statistics
Matches: 69, Mismatches: 4, Indels: 17
0.77 0.04 0.19
Matches are distributed among these distances:
8 24 0.35
9 10 0.14
10 28 0.41
11 7 0.10
ACGTcount: A:0.60, C:0.00, G:0.02, T:0.37
Consensus pattern (10 bp):
AAATATATAT
Found at i:20151 original size:2 final size:2
Alignment explanation
Indices: 20106--20138 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
20096 CAAACGTGTG
20106 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
20139 TAAAAGTTAT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:20196 original size:11 final size:11
Alignment explanation
Indices: 20180--20228 Score: 53
Period size: 11 Copynumber: 4.4 Consensus size: 11
20170 AAATATTTTA
*
20180 AATATAATTAT
1 AATATAAATAT
*
20191 AATATATGATAT
1 AATATA-AATAT
*
20203 AAAATAAATAT
1 AATATAAATAT
*
20214 AAAATAAATAT
1 AATATAAATAT
20225 AATA
1 AATA
20229 ATCTTAATTT
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
11 24 0.75
12 8 0.25
ACGTcount: A:0.63, C:0.00, G:0.02, T:0.35
Consensus pattern (11 bp):
AATATAAATAT
Found at i:20209 original size:5 final size:6
Alignment explanation
Indices: 20147--20226 Score: 51
Period size: 5 Copynumber: 13.0 Consensus size: 6
20137 ATTAAAAGTT
* * *
20147 ATATAA A-ATAA ATTATTA ATAATAA ATATTTTAA ATATAA TTAT-A ATATATG
1 ATATAA ATATAA A-TATAA AT-ATAA ATA---TAA ATATAA ATATAA ATATA-A
20199 ATATAA A-ATAA ATATAA A-ATAA ATATAA
1 ATATAA ATATAA ATATAA ATATAA ATATAA
20227 TAATCTTAAT
Statistics
Matches: 58, Mismatches: 6, Indels: 20
0.69 0.07 0.24
Matches are distributed among these distances:
5 19 0.33
6 19 0.33
7 14 0.24
9 6 0.10
ACGTcount: A:0.61, C:0.00, G:0.01, T:0.38
Consensus pattern (6 bp):
ATATAA
Found at i:21251 original size:14 final size:14
Alignment explanation
Indices: 21234--21299 Score: 53
Period size: 14 Copynumber: 4.5 Consensus size: 14
21224 GGTTCGTCTA
*
21234 TTTTATTTTAATTT
1 TTTTAATTTAATTT
21248 TTTTAATTTAATTT
1 TTTTAATTTAATTT
* *
21262 TTAATAATTAAATATAT
1 TT-TTAATTTAAT-T-T
21279 TTTTAA-TTAACTTT
1 TTTTAATTTAA-TTT
*
21293 TGTTAAT
1 TTTTAAT
21300 ATTTTTTAAA
Statistics
Matches: 41, Mismatches: 6, Indels: 9
0.73 0.11 0.16
Matches are distributed among these distances:
14 21 0.51
15 12 0.29
16 5 0.12
17 3 0.07
ACGTcount: A:0.33, C:0.02, G:0.02, T:0.64
Consensus pattern (14 bp):
TTTTAATTTAATTT
Found at i:21413 original size:21 final size:20
Alignment explanation
Indices: 21368--21418 Score: 68
Period size: 20 Copynumber: 2.5 Consensus size: 20
21358 ACTAGTAAAC
21368 TAAAATTATAATTATTATTA
1 TAAAATTATAATTATTATTA
*
21388 TAAAATGTATTATTA-TATTA
1 TAAAAT-TATAATTATTATTA
*
21408 TAAAAATATAA
1 TAAAATTATAA
21419 ATTTTTAATT
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
19 4 0.15
20 16 0.59
21 7 0.26
ACGTcount: A:0.53, C:0.00, G:0.02, T:0.45
Consensus pattern (20 bp):
TAAAATTATAATTATTATTA
Found at i:22310 original size:16 final size:17
Alignment explanation
Indices: 22289--22329 Score: 52
Period size: 16 Copynumber: 2.6 Consensus size: 17
22279 TTTTGAGTTA
*
22289 ATTTTAGATTTT-TATC
1 ATTTTAGATTTTAAATC
22305 ATTTTA-ATTTTAAATC
1 ATTTTAGATTTTAAATC
22321 ATTTT-GATT
1 ATTTTAGATT
22330 CGTGGATCAT
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
15 5 0.23
16 17 0.77
ACGTcount: A:0.29, C:0.05, G:0.05, T:0.61
Consensus pattern (17 bp):
ATTTTAGATTTTAAATC
Found at i:22453 original size:16 final size:16
Alignment explanation
Indices: 22425--22458 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 16
22415 TTAGGATCAG
22425 ATCATCTTTGATTCGA
1 ATCATCTTTGATTCGA
22441 ATCAT-TTTGGATTCGA
1 ATCATCTTT-GATTCGA
22457 AT
1 AT
22459 TAATTAACTT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 3 0.18
16 14 0.82
ACGTcount: A:0.26, C:0.15, G:0.15, T:0.44
Consensus pattern (16 bp):
ATCATCTTTGATTCGA
Found at i:22750 original size:37 final size:37
Alignment explanation
Indices: 22709--22832 Score: 90
Period size: 37 Copynumber: 3.1 Consensus size: 37
22699 GATTAATCAA
22709 GTTTAATATTCAAGTTAATCAATTTCGAGTCAATTAG
1 GTTTAATATTCAAGTTAATCAATTTCGAGTCAATTAG
* * * * * *
22746 GTTT-ATCACTT-GAGTTTATCAAGTTTAGTTATTTTGAGTTCAG
1 GTTTAAT-A-TTCAAGTTAATCAA-TTTCG--A--GTCAATT-AG
22789 AAGTTTAATATTCAAGTTAATCAATTTCGAGTCAATTAG
1 --GTTTAATATTCAAGTTAATCAATTTCGAGTCAATTAG
22828 GTTTA
1 GTTTA
22833 TCACTTGAGT
Statistics
Matches: 63, Mismatches: 12, Indels: 24
0.64 0.12 0.24
Matches are distributed among these distances:
36 2 0.03
37 19 0.30
38 6 0.10
39 2 0.03
40 5 0.08
42 5 0.08
43 2 0.03
44 6 0.10
45 14 0.22
46 2 0.03
ACGTcount: A:0.31, C:0.10, G:0.15, T:0.44
Consensus pattern (37 bp):
GTTTAATATTCAAGTTAATCAATTTCGAGTCAATTAG
Found at i:22793 original size:82 final size:82
Alignment explanation
Indices: 22707--22870 Score: 328
Period size: 82 Copynumber: 2.0 Consensus size: 82
22697 TAGATTAATC
22707 AAGTTTAATATTCAAGTTAATCAATTTCGAGTCAATTAGGTTTATCACTTGAGTTTATCAAGTTT
1 AAGTTTAATATTCAAGTTAATCAATTTCGAGTCAATTAGGTTTATCACTTGAGTTTATCAAGTTT
22772 AGTTATTTTGAGTTCAG
66 AGTTATTTTGAGTTCAG
22789 AAGTTTAATATTCAAGTTAATCAATTTCGAGTCAATTAGGTTTATCACTTGAGTTTATCAAGTTT
1 AAGTTTAATATTCAAGTTAATCAATTTCGAGTCAATTAGGTTTATCACTTGAGTTTATCAAGTTT
22854 AGTTATTTTGAGTTCAG
66 AGTTATTTTGAGTTCAG
22871 GTCATTTCGT
Statistics
Matches: 82, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
82 82 1.00
ACGTcount: A:0.30, C:0.10, G:0.16, T:0.44
Consensus pattern (82 bp):
AAGTTTAATATTCAAGTTAATCAATTTCGAGTCAATTAGGTTTATCACTTGAGTTTATCAAGTTT
AGTTATTTTGAGTTCAG
Found at i:24667 original size:22 final size:22
Alignment explanation
Indices: 24642--24692 Score: 93
Period size: 22 Copynumber: 2.3 Consensus size: 22
24632 CCCATTTTAT
24642 ATATTAAAAGGTTTTGGTTCAA
1 ATATTAAAAGGTTTTGGTTCAA
*
24664 ATATTAAAGGGTTTTGGTTCAA
1 ATATTAAAAGGTTTTGGTTCAA
24686 ATATTAA
1 ATATTAA
24693 GCTGGTTAAA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
22 28 1.00
ACGTcount: A:0.37, C:0.04, G:0.18, T:0.41
Consensus pattern (22 bp):
ATATTAAAAGGTTTTGGTTCAA
Found at i:24795 original size:21 final size:22
Alignment explanation
Indices: 24771--24822 Score: 58
Period size: 21 Copynumber: 2.5 Consensus size: 22
24761 AATTATTTTT
24771 TAATTATATAGT-ATACA-TATA
1 TAATTATATA-TCATACATTATA
*
24792 TAA-TATTTATCATACATTATA
1 TAATTATATATCATACATTATA
24813 TAATT-TATAT
1 TAATTATATAT
24823 TTTATAGAAG
Statistics
Matches: 26, Mismatches: 2, Indels: 6
0.76 0.06 0.18
Matches are distributed among these distances:
19 1 0.04
20 10 0.38
21 14 0.54
22 1 0.04
ACGTcount: A:0.44, C:0.06, G:0.02, T:0.48
Consensus pattern (22 bp):
TAATTATATATCATACATTATA
Found at i:26553 original size:64 final size:64
Alignment explanation
Indices: 26462--26581 Score: 231
Period size: 64 Copynumber: 1.9 Consensus size: 64
26452 TACTACATAT
*
26462 ATATATATATATGTATTTTTTTAAAAAAATTCAATCATTATATAATATGTGACATAGCTACTAC
1 ATATATATATATGTATTTTTTTAAAAAAATTCAATCATTATATAATAAGTGACATAGCTACTAC
26526 ATATATATATATGTATTTTTTTAAAAAAATTCAATCATTATATAATAAGTGACATA
1 ATATATATATATGTATTTTTTTAAAAAAATTCAATCATTATATAATAAGTGACATA
26582 AAATTAGAAG
Statistics
Matches: 55, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
64 55 1.00
ACGTcount: A:0.44, C:0.07, G:0.06, T:0.42
Consensus pattern (64 bp):
ATATATATATATGTATTTTTTTAAAAAAATTCAATCATTATATAATAAGTGACATAGCTACTAC
Found at i:26838 original size:19 final size:21
Alignment explanation
Indices: 26809--26851 Score: 63
Period size: 20 Copynumber: 2.1 Consensus size: 21
26799 ATCAAAAACC
*
26809 TATATTAAACAAAT-TATTAA
1 TATATTAAACAAATATATAAA
26829 TATA-TAAACAAATATATAAA
1 TATATTAAACAAATATATAAA
26849 TAT
1 TAT
26852 TTACTAACTT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 9 0.43
20 12 0.57
ACGTcount: A:0.58, C:0.05, G:0.00, T:0.37
Consensus pattern (21 bp):
TATATTAAACAAATATATAAA
Found at i:26918 original size:18 final size:19
Alignment explanation
Indices: 26872--26931 Score: 54
Period size: 18 Copynumber: 3.3 Consensus size: 19
26862 GAATATCTTT
*
26872 ATAATATAAA-AAATAAAC
1 ATAAAATAAATAAATAAAC
* *
26890 ATAACACAAATAAATAAA-
1 ATAAAATAAATAAATAAAC
* *
26908 ATAAAATAAATTAA-AAGC
1 ATAAAATAAATAAATAAAC
26926 ATAAAA
1 ATAAAA
26932 AATATGATTA
Statistics
Matches: 34, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
17 2 0.06
18 25 0.74
19 7 0.21
ACGTcount: A:0.72, C:0.07, G:0.02, T:0.20
Consensus pattern (19 bp):
ATAAAATAAATAAATAAAC
Found at i:27445 original size:70 final size:70
Alignment explanation
Indices: 27371--27512 Score: 248
Period size: 70 Copynumber: 2.0 Consensus size: 70
27361 ATATAATTTA
* * *
27371 ATACAAAAAATAAATACTAATATAATATGAATGCACGAATATATCAATATATAGAATACAAATTA
1 ATACAAAAAATAAACACTAATATAATATGAATGCACAAATATATCAATATATAAAATACAAATTA
27436 TTAAC
66 TTAAC
*
27441 ATACAAAAAATAAACACTAATATAATATGAATGTACAAATATATCAATATATAAAATACAAATTA
1 ATACAAAAAATAAACACTAATATAATATGAATGCACAAATATATCAATATATAAAATACAAATTA
27506 TTAAC
66 TTAAC
27511 AT
1 AT
27513 GTCATATGTA
Statistics
Matches: 68, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
70 68 1.00
ACGTcount: A:0.57, C:0.10, G:0.04, T:0.29
Consensus pattern (70 bp):
ATACAAAAAATAAACACTAATATAATATGAATGCACAAATATATCAATATATAAAATACAAATTA
TTAAC
Found at i:28147 original size:18 final size:19
Alignment explanation
Indices: 28115--28151 Score: 58
Period size: 18 Copynumber: 2.0 Consensus size: 19
28105 TGGGTTAATA
28115 ATTTTAGTTGAGCTTTTAT
1 ATTTTAGTTGAGCTTTTAT
*
28134 ATTTT-GTTGGGCTTTTAT
1 ATTTTAGTTGAGCTTTTAT
28152 CTTTGCTTGT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 12 0.71
19 5 0.29
ACGTcount: A:0.16, C:0.05, G:0.19, T:0.59
Consensus pattern (19 bp):
ATTTTAGTTGAGCTTTTAT
Found at i:30380 original size:13 final size:13
Alignment explanation
Indices: 30362--30387 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
30352 TACAGCAAGT
30362 ATGTATCGATACA
1 ATGTATCGATACA
30375 ATGTATCGATACA
1 ATGTATCGATACA
30388 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:32645 original size:21 final size:21
Alignment explanation
Indices: 32612--32656 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
32602 TTGCAAGTTG
*
32612 AAATAAAGAAGTTGGCTAATGA
1 AAATAAAGAAGTTAGCTAA-GA
*
32634 AAATAATG-AGTTAGCTAAGA
1 AAATAAAGAAGTTAGCTAAGA
32654 AAA
1 AAA
32657 ATGAAAACTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 5 0.24
21 9 0.43
22 7 0.33
ACGTcount: A:0.53, C:0.04, G:0.20, T:0.22
Consensus pattern (21 bp):
AAATAAAGAAGTTAGCTAAGA
Found at i:34480 original size:15 final size:15
Alignment explanation
Indices: 34460--34490 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
34450 TAAAAATGTC
*
34460 CAAAATGAGGAAGCT
1 CAAAATGAAGAAGCT
34475 CAAAATGAAGAAGCT
1 CAAAATGAAGAAGCT
34490 C
1 C
34491 CAAACGAAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.48, C:0.16, G:0.23, T:0.13
Consensus pattern (15 bp):
CAAAATGAAGAAGCT
Found at i:36571 original size:13 final size:13
Alignment explanation
Indices: 36553--36591 Score: 60
Period size: 13 Copynumber: 3.0 Consensus size: 13
36543 ACATTTTTAT
36553 TTGTATCGATACA
1 TTGTATCGATACA
36566 TTGTATCGATACA
1 TTGTATCGATACA
* *
36579 CTATATCGATACA
1 TTGTATCGATACA
36592 GGAGGATTAT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
13 24 1.00
ACGTcount: A:0.33, C:0.18, G:0.13, T:0.36
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:36755 original size:20 final size:19
Alignment explanation
Indices: 36714--36756 Score: 52
Period size: 20 Copynumber: 2.2 Consensus size: 19
36704 ATCTTTTACA
36714 AAATACTTGTTTTTCACTTC
1 AAATACTTGTTTTTCAC-TC
36734 AAATCACTTCGTTTTTCA-TC
1 AAAT-ACTT-GTTTTTCACTC
36754 AAA
1 AAA
36757 ACCAGCATCA
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
20 9 0.43
21 4 0.19
22 8 0.38
ACGTcount: A:0.30, C:0.21, G:0.05, T:0.44
Consensus pattern (19 bp):
AAATACTTGTTTTTCACTC
Found at i:38396 original size:12 final size:12
Alignment explanation
Indices: 38379--38404 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
38369 TTATATGCAA
38379 ATAAATTTTGAT
1 ATAAATTTTGAT
38391 ATAAATTTTGAT
1 ATAAATTTTGAT
38403 AT
1 AT
38405 GTGTGAATTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.08, T:0.50
Consensus pattern (12 bp):
ATAAATTTTGAT
Found at i:38538 original size:21 final size:21
Alignment explanation
Indices: 38509--38568 Score: 62
Period size: 21 Copynumber: 3.2 Consensus size: 21
38499 AAACTTGTTA
*
38509 AAATCATTTTGTTTAAGGGAG
1 AAATTATTTTGTTTAAGGGAG
38530 AAATTATTTTG-TT-----A-
1 AAATTATTTTGTTTAAGGGAG
38544 AAATTATTTTGTTTAAGGGAG
1 AAATTATTTTGTTTAAGGGAG
38565 AAAT
1 AAAT
38569 AAAAGAAAAA
Statistics
Matches: 31, Mismatches: 1, Indels: 14
0.67 0.02 0.30
Matches are distributed among these distances:
14 11 0.35
15 3 0.10
20 3 0.10
21 14 0.45
ACGTcount: A:0.37, C:0.02, G:0.18, T:0.43
Consensus pattern (21 bp):
AAATTATTTTGTTTAAGGGAG
Found at i:38549 original size:14 final size:14
Alignment explanation
Indices: 38530--38556 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
38520 TTTAAGGGAG
38530 AAATTATTTTGTTA
1 AAATTATTTTGTTA
38544 AAATTATTTTGTT
1 AAATTATTTTGTT
38557 TAAGGGAGAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.33, C:0.00, G:0.07, T:0.59
Consensus pattern (14 bp):
AAATTATTTTGTTA
Found at i:39202 original size:13 final size:13
Alignment explanation
Indices: 39184--39209 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
39174 TACAGCAAGT
39184 ATGTATCGATACA
1 ATGTATCGATACA
39197 ATGTATCGATACA
1 ATGTATCGATACA
39210 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:41635 original size:20 final size:20
Alignment explanation
Indices: 41610--41687 Score: 75
Period size: 20 Copynumber: 3.8 Consensus size: 20
41600 ATTGCCAATG
41610 AAATGTATCGATACATTAAT
1 AAATGTATCGATACATTAAT
* ***
41630 AAATGTATCGATATATGCTT
1 AAATGTATCGATACATTAAT
*
41650 CAAATTGTATCGATACATTTAT
1 -AAA-TGTATCGATACATTAAT
* *
41672 CATTGTATCGATACAT
1 AAATGTATCGATACAT
41688 CTGGGTTTTT
Statistics
Matches: 46, Mismatches: 10, Indels: 4
0.77 0.17 0.07
Matches are distributed among these distances:
20 29 0.63
21 4 0.09
22 13 0.28
ACGTcount: A:0.37, C:0.13, G:0.12, T:0.38
Consensus pattern (20 bp):
AAATGTATCGATACATTAAT
Found at i:50892 original size:36 final size:34
Alignment explanation
Indices: 50805--50902 Score: 107
Period size: 36 Copynumber: 3.0 Consensus size: 34
50795 CCTTGCAACA
*
50805 CTATC-TTTC-AAGGCTAAGATAGAA-AC-CTCC
1 CTATCTTTTCAAAGGCTAAGATAGAACTCTCTCC
** *
50835 CTATCTTTTCACGGGCAAAGATAGAACCTCTCTCC
1 CTATCTTTTCAAAGGCTAAGATAGAA-CTCTCTCC
50870 CTATCTTTTTCAAAGGCTAAGATAGAACT-TCTC
1 CTATC-TTTTCAAAGGCTAAGATAGAACTCTCTC
50903 AATCACTTCT
Statistics
Matches: 55, Mismatches: 7, Indels: 8
0.79 0.10 0.11
Matches are distributed among these distances:
30 5 0.09
31 4 0.07
32 12 0.22
34 5 0.09
35 11 0.20
36 18 0.33
ACGTcount: A:0.30, C:0.27, G:0.13, T:0.31
Consensus pattern (34 bp):
CTATCTTTTCAAAGGCTAAGATAGAACTCTCTCC
Found at i:51377 original size:14 final size:14
Alignment explanation
Indices: 51358--51388 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
51348 ACAATGTATC
*
51358 GATACATGAACAGT
1 GATACATAAACAGT
51372 GATACATAAACAGT
1 GATACATAAACAGT
51386 GAT
1 GAT
51389 GAACAGTGAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.45, C:0.13, G:0.19, T:0.23
Consensus pattern (14 bp):
GATACATAAACAGT
Found at i:51408 original size:32 final size:32
Alignment explanation
Indices: 51372--51461 Score: 153
Period size: 32 Copynumber: 2.8 Consensus size: 32
51362 CATGAACAGT
*
51372 GATACATAAACAGTGATGAACAGTGATGTATC
1 GATACATGAACAGTGATGAACAGTGATGTATC
*
51404 GATACATGAATAGTGATGAACAGTGATGTATC
1 GATACATGAACAGTGATGAACAGTGATGTATC
*
51436 GATACATGAACAATGATGAACAGTGA
1 GATACATGAACAGTGATGAACAGTGA
51462 AAATGAGATT
Statistics
Matches: 54, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
32 54 1.00
ACGTcount: A:0.41, C:0.11, G:0.23, T:0.24
Consensus pattern (32 bp):
GATACATGAACAGTGATGAACAGTGATGTATC
Found at i:51507 original size:13 final size:13
Alignment explanation
Indices: 51489--51513 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
51479 TGTCAGTTTT
51489 ATGTATCGATACA
1 ATGTATCGATACA
51502 ATGTATCGATAC
1 ATGTATCGATAC
51514 TAAGCAAAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:51968 original size:20 final size:20
Alignment explanation
Indices: 51943--51982 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
51933 AACATACGAA
51943 TGTCCATCACTAAGGTCTAT
1 TGTCCATCACTAAGGTCTAT
51963 TGTCCATCACTAAGGTCTAT
1 TGTCCATCACTAAGGTCTAT
51983 GGTAGTGGAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.25, C:0.25, G:0.15, T:0.35
Consensus pattern (20 bp):
TGTCCATCACTAAGGTCTAT
Found at i:53358 original size:35 final size:33
Alignment explanation
Indices: 53306--53398 Score: 91
Period size: 35 Copynumber: 2.7 Consensus size: 33
53296 CTATTGTTGC
* *
53306 TTTC-TTTCATTTGATTTATTTTATATTTGCATTA
1 TTTCATTTCATTTTATTTATTTTAT-GTT-CATTA
* *
53340 TTTCATTTCATTTTATTTACTTTATGTTCTTTA
1 TTTCATTTCATTTTATTTATTTTATGTTCATTA
53373 TTT-ACTTTACATTGTTATTTATTTTA
1 TTTCA-TTT-CATT-TTATTTATTTTA
53399 CCTTTTTTTA
Statistics
Matches: 50, Mismatches: 5, Indels: 7
0.81 0.08 0.11
Matches are distributed among these distances:
32 1 0.02
33 10 0.20
34 10 0.20
35 29 0.58
ACGTcount: A:0.20, C:0.10, G:0.04, T:0.66
Consensus pattern (33 bp):
TTTCATTTCATTTTATTTATTTTATGTTCATTA
Found at i:57161 original size:20 final size:20
Alignment explanation
Indices: 57136--57213 Score: 88
Period size: 20 Copynumber: 3.9 Consensus size: 20
57126 GTAAAAAGAC
57136 AGAATGTATCGATACATCGA
1 AGAATGTATCGATACATCGA
57156 AGAATGTATCGATACATTC-A
1 AGAATGTATCGATACA-TCGA
* * * *
57176 TA-CATGTATAGATATATTGA
1 -AGAATGTATCGATACATCGA
57196 AGAATGTATCGATACATC
1 AGAATGTATCGATACATC
57214 TGAGTAAAAA
Statistics
Matches: 46, Mismatches: 8, Indels: 8
0.74 0.13 0.13
Matches are distributed among these distances:
19 2 0.04
20 41 0.89
21 3 0.07
ACGTcount: A:0.40, C:0.13, G:0.17, T:0.31
Consensus pattern (20 bp):
AGAATGTATCGATACATCGA
Found at i:58156 original size:33 final size:33
Alignment explanation
Indices: 58118--58210 Score: 107
Period size: 32 Copynumber: 2.8 Consensus size: 33
58108 TGAAAAGGGT
*
58118 TGCCACCGACTTGCGTGGGCTTTTAAAAAAAGG
1 TGCCACCGACTTGTGTGGGCTTTTAAAAAAAGG
** * * * *
58151 TGCCACTAACTTGTATGGGC-TTTGAAAAGAGT
1 TGCCACCGACTTGTGTGGGCTTTTAAAAAAAGG
*
58183 TGCCACCGACTTGTGTGGGCTTTGAAAA
1 TGCCACCGACTTGTGTGGGCTTTTAAAA
58211 GAGTTACCAC
Statistics
Matches: 47, Mismatches: 12, Indels: 2
0.77 0.20 0.03
Matches are distributed among these distances:
32 26 0.55
33 21 0.45
ACGTcount: A:0.26, C:0.19, G:0.27, T:0.28
Consensus pattern (33 bp):
TGCCACCGACTTGTGTGGGCTTTTAAAAAAAGG
Found at i:58312 original size:28 final size:28
Alignment explanation
Indices: 58146--58635 Score: 576
Period size: 28 Copynumber: 17.1 Consensus size: 28
58136 GCTTTTAAAA
*
58146 AAAGG-TGCCACTAACTTGTATGGGCTTTG
1 AAAGGATGCCACTGACTTG--TGGGCTTTG
* *
58175 AAAAGAGTTGCCACCGACTTGTGTGGGCTTTG
1 -AAAG-GATGCCACTGAC-T-TGTGGGCTTTG
* * *
58207 AAAAGAGTTACCACTGACTTATGGGCTTTG
1 -AAAG-GATGCCACTGACTTGTGGGCTTTG
58237 AGAAGGATGCCACTGACTTGTGGGCTTTG
1 A-AAGGATGCCACTGACTTGTGGGCTTTG
*
58266 AGAAGGATGCCACTAACTTGTGGGCTTTG
1 A-AAGGATGCCACTGACTTGTGGGCTTTG
*
58295 AAAGGGTGCCACTGACTTGTGGGCTTTG
1 AAAGGATGCCACTGACTTGTGGGCTTTG
*
58323 AAAGGGTGCCACTGACTTGTGGGCTTTG
1 AAAGGATGCCACTGACTTGTGGGCTTTG
58351 AAAGGATGCCACTGACTTGTGGGCTTTG
1 AAAGGATGCCACTGACTTGTGGGCTTTG
*
58379 AGAAGGATGCCACTAACTTGTGGGCTTTG
1 A-AAGGATGCCACTGACTTGTGGGCTTTG
* *
58408 AAAGGATGCCACTAACTTGTGGGCTTTA
1 AAAGGATGCCACTGACTTGTGGGCTTTG
*
58436 AAAGTG-TGCTACTGACTTGTGGGCTTTG
1 AAAG-GATGCCACTGACTTGTGGGCTTTG
*
58464 AAAGGATGCCACTGACTTATGGGCTTTG
1 AAAGGATGCCACTGACTTGTGGGCTTTG
* * *
58492 AAAAGATGCCATTGACTTGTGGGTTTTG
1 AAAGGATGCCACTGACTTGTGGGCTTTG
58520 AGAAGGATGCCACTGACTTGTGGGCTTTG
1 A-AAGGATGCCACTGACTTGTGGGCTTTG
*
58549 AGAAGGATGCCATTGACTTGTGGGCTTTTG
1 A-AAGGATGCCACTGACTTGTGGGC-TTTG
* **
58579 -AAGAGATGCCATTGACTTGTGGTTTTTTG
1 AAAG-GATGCCACTGACTTGTGG-GCTTTG
* * *
58608 -AA-GAGGCCACTAACCTGTGGGCTTTG
1 AAAGGATGCCACTGACTTGTGGGCTTTG
58634 AA
1 AA
58636 GAGATGAATG
Statistics
Matches: 412, Mismatches: 35, Indels: 29
0.87 0.07 0.06
Matches are distributed among these distances:
26 4 0.01
27 16 0.04
28 182 0.44
29 151 0.37
30 21 0.05
31 2 0.00
32 33 0.08
33 1 0.00
34 2 0.00
ACGTcount: A:0.23, C:0.17, G:0.31, T:0.30
Consensus pattern (28 bp):
AAAGGATGCCACTGACTTGTGGGCTTTG
Found at i:58371 original size:113 final size:113
Alignment explanation
Indices: 58147--58635 Score: 619
Period size: 113 Copynumber: 4.3 Consensus size: 113
58137 CTTTTAAAAA
* *
58147 AAGG-TGCCACTAACTTGTATGGGCTTTGAAAAGAGTTGCCACCGACTTGTGTGGGCTTTGAAAA
1 AAGGATGCCACTAACTTG--TGGGCTTTG-AAAG-GATGCCACTGAC-T-TGTGGGCTTTG-AAA
* * *
58211 GAGTTACCACTGACTTATGGGCTTTGAGAAGGATGCCACTGACTTGTGGGCTTTGAG
59 G-GGTGCCACTGACTTGTGGGCTTTGA-AAGGATGCCACTGACTTGTGGGCTTTGAG
*
58268 AAGGATGCCACTAACTTGTGGGCTTTGAAAGGGTGCCACTGACTTGTGGGCTTTGAAAGGGTGCC
1 AAGGATGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGGTGCC
58333 ACTGACTTGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAG
66 ACTGACTTGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAG
* * * *
58381 AAGGATGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGCTTTAAAAGTGTGCT
1 AAGGATGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGGTGCC
*
58446 ACTGACTTGTGGGCTTTGAAAGGATGCCACTGACTTATGGGCTTTGA-
66 ACTGACTTGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAG
* * * * *
58493 AAAGATGCCATTGACTTGTGGGTTTTGAGAAGGATGCCACTGACTTGTGGGCTTTGAGAAGGATG
1 AAGGATGCCACTAACTTGTGGGCTTTGA-AAGGATGCCACTGACTTGTGGGCTTTGA-AAGGGTG
* * * **
58558 CCATTGACTTGTGGGCTTTTG-AAGAGATGCCATTGACTTGT-GGTTTTTTG
64 CCACTGACTTGTGGGC-TTTGAAAG-GATGCCACTGACTTGTGGGCTTTGAG
* *
58608 AA-GAGGCCACTAACCTGTGGGCTTTGAA
1 AAGGATGCCACTAACTTGTGGGCTTTGAA
58636 GAGATGAATG
Statistics
Matches: 331, Mismatches: 31, Indels: 20
0.87 0.08 0.05
Matches are distributed among these distances:
112 24 0.07
113 162 0.49
114 69 0.21
115 24 0.07
116 11 0.03
117 1 0.00
118 10 0.03
119 4 0.01
120 9 0.03
121 4 0.01
122 13 0.04
ACGTcount: A:0.23, C:0.17, G:0.31, T:0.30
Consensus pattern (113 bp):
AAGGATGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGGTGCC
ACTGACTTGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAG
Found at i:67734 original size:21 final size:19
Alignment explanation
Indices: 67667--67736 Score: 59
Period size: 20 Copynumber: 3.5 Consensus size: 19
67657 CACACCTAGA
***
67667 TGTATCGATACATGCTGCTT
1 TGTATCGATACATG-TAAAT
**
67687 TGTATCGATACATGTTTAT
1 TGTATCGATACATGTAAAT
*
67706 TATATCGATACATGGTCAAAT
1 TGTATCGATACAT-GT-AAAT
67727 TGTATCGATA
1 TGTATCGATA
67737 TATGAAACTG
Statistics
Matches: 41, Mismatches: 7, Indels: 3
0.80 0.14 0.06
Matches are distributed among these distances:
19 14 0.34
20 16 0.39
21 11 0.27
ACGTcount: A:0.29, C:0.14, G:0.17, T:0.40
Consensus pattern (19 bp):
TGTATCGATACATGTAAAT
Found at i:67814 original size:33 final size:32
Alignment explanation
Indices: 67769--67835 Score: 91
Period size: 33 Copynumber: 2.0 Consensus size: 32
67759 CTATTACTAT
*
67769 TTGTATCGATACATG-GTACAATGTATCGATACA
1 TTGTATCAATACATGAG-A-AATGTATCGATACA
67802 TTGTATCAATACATGAAGAAATGTATCGATACA
1 TTGTATCAATACATG-AGAAATGTATCGATACA
67835 T
1 T
67836 AGCATGTAAT
Statistics
Matches: 31, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
33 29 0.94
34 1 0.03
35 1 0.03
ACGTcount: A:0.37, C:0.13, G:0.16, T:0.33
Consensus pattern (32 bp):
TTGTATCAATACATGAGAAATGTATCGATACA
Found at i:73972 original size:20 final size:20
Alignment explanation
Indices: 73947--74011 Score: 81
Period size: 20 Copynumber: 3.6 Consensus size: 20
73937 AAAACCCAGA
73947 TGTATCGATACAATATTCTT
1 TGTATCGATACAATATTCTT
73967 TGTATCGATAC---A----T
1 TGTATCGATACAATATTCTT
73980 TGTATCGATACAATATTCTT
1 TGTATCGATACAATATTCTT
74000 TGTATCGATACA
1 TGTATCGATACA
74012 TTGTATCGAT
Statistics
Matches: 38, Mismatches: 0, Indels: 14
0.73 0.00 0.27
Matches are distributed among these distances:
13 12 0.32
16 1 0.03
17 1 0.03
20 24 0.63
ACGTcount: A:0.31, C:0.15, G:0.12, T:0.42
Consensus pattern (20 bp):
TGTATCGATACAATATTCTT
Found at i:73984 original size:13 final size:13
Alignment explanation
Indices: 73966--74027 Score: 64
Period size: 13 Copynumber: 5.2 Consensus size: 13
73956 ACAATATTCT
73966 TTGTATCGATACA
1 TTGTATCGATACA
73979 TTGTATCGATACA
1 TTGTATCGATACA
* *
73992 ----AT--ATTCT
1 TTGTATCGATACA
73999 TTGTATCGATACA
1 TTGTATCGATACA
74012 TTGTATCGATACA
1 TTGTATCGATACA
74025 TTG
1 TTG
74028 GGTACTATTT
Statistics
Matches: 39, Mismatches: 4, Indels: 12
0.71 0.07 0.22
Matches are distributed among these distances:
7 3 0.08
9 2 0.05
11 2 0.05
13 32 0.82
ACGTcount: A:0.29, C:0.15, G:0.15, T:0.42
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:73989 original size:33 final size:33
Alignment explanation
Indices: 73947--74024 Score: 156
Period size: 33 Copynumber: 2.4 Consensus size: 33
73937 AAAACCCAGA
73947 TGTATCGATACAATATTCTTTGTATCGATACAT
1 TGTATCGATACAATATTCTTTGTATCGATACAT
73980 TGTATCGATACAATATTCTTTGTATCGATACAT
1 TGTATCGATACAATATTCTTTGTATCGATACAT
74013 TGTATCGATACA
1 TGTATCGATACA
74025 TTGGGTACTA
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 45 1.00
ACGTcount: A:0.31, C:0.15, G:0.13, T:0.41
Consensus pattern (33 bp):
TGTATCGATACAATATTCTTTGTATCGATACAT
Found at i:75228 original size:20 final size:19
Alignment explanation
Indices: 75199--75237 Score: 69
Period size: 20 Copynumber: 2.0 Consensus size: 19
75189 AGGTCAAAAC
75199 CCTTAAATGTATCGATACA
1 CCTTAAATGTATCGATACA
75218 CCTTCAAATGTATCGATACA
1 CCTT-AAATGTATCGATACA
75238 TAATGCACAG
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 4 0.21
20 15 0.79
ACGTcount: A:0.36, C:0.23, G:0.10, T:0.31
Consensus pattern (19 bp):
CCTTAAATGTATCGATACA
Found at i:76983 original size:15 final size:15
Alignment explanation
Indices: 76963--76993 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
76953 TCAACCATTA
76963 AGGATGATGAAGATG
1 AGGATGATGAAGATG
*
76978 AGGATGATGATGATG
1 AGGATGATGAAGATG
76993 A
1 A
76994 TGGTGACTCA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.39, C:0.00, G:0.39, T:0.23
Consensus pattern (15 bp):
AGGATGATGAAGATG
Found at i:81545 original size:13 final size:13
Alignment explanation
Indices: 81527--81551 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
81517 CAACATTCTC
81527 TGTATCGATACAT
1 TGTATCGATACAT
81540 TGTATCGATACA
1 TGTATCGATACA
81552 AAGGGTTTAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:81718 original size:20 final size:20
Alignment explanation
Indices: 81681--81724 Score: 63
Period size: 22 Copynumber: 2.1 Consensus size: 20
81671 TGCAAATTTC
81681 TCATTTTTCACTTCAAAATACA
1 TCATTTTTCAC-TCAAAAT-CA
81703 TCATTTTTCA-TCAAAATCA
1 TCATTTTTCACTCAAAATCA
81722 TCA
1 TCA
81725 ACAAAAACAG
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
19 5 0.23
20 7 0.32
22 10 0.45
ACGTcount: A:0.36, C:0.23, G:0.00, T:0.41
Consensus pattern (20 bp):
TCATTTTTCACTCAAAATCA
Found at i:83944 original size:13 final size:13
Alignment explanation
Indices: 83926--83951 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
83916 CAATTTTTTG
83926 TGTATCGATACAT
1 TGTATCGATACAT
83939 TGTATCGATACAT
1 TGTATCGATACAT
83952 ACTTGTTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:86458 original size:13 final size:13
Alignment explanation
Indices: 86440--86464 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
86430 ATAATCACCC
86440 TGTATCGATACAT
1 TGTATCGATACAT
86453 TGTATCGATACA
1 TGTATCGATACA
86465 AAGAAAAATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:88562 original size:15 final size:15
Alignment explanation
Indices: 88542--88572 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
88532 ATTTCGTTTG
*
88542 GAGCTTCTTCATTTT
1 GAGCTTCCTCATTTT
88557 GAGCTTCCTCATTTT
1 GAGCTTCCTCATTTT
88572 G
1 G
88573 GACATTTTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.13, C:0.23, G:0.16, T:0.48
Consensus pattern (15 bp):
GAGCTTCCTCATTTT
Found at i:90405 original size:21 final size:21
Alignment explanation
Indices: 90376--90420 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
90366 AAGTTTTCAT
*
90376 TTTTCTTAGCTAAC-TCATTA
1 TTTTCTTAGCCAACTTCATTA
*
90396 TTTTCATTAGCCAACTTCTTTA
1 TTTTC-TTAGCCAACTTCATTA
90418 TTT
1 TTT
90421 CAACTTGCAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 5 0.24
21 8 0.38
22 8 0.38
ACGTcount: A:0.22, C:0.20, G:0.04, T:0.53
Consensus pattern (21 bp):
TTTTCTTAGCCAACTTCATTA
Found at i:92656 original size:13 final size:13
Alignment explanation
Indices: 92638--92663 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
92628 CAATTTTTTG
92638 TGTATCGATACAT
1 TGTATCGATACAT
92651 TGTATCGATACAT
1 TGTATCGATACAT
92664 ACTTGCTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:94912 original size:32 final size:30
Alignment explanation
Indices: 94876--94934 Score: 75
Period size: 32 Copynumber: 1.9 Consensus size: 30
94866 GAAATCAAAT
94876 ACAAAGAGCT-TAGAAAAATAATAACAATATGA
1 ACAAA-AGCTCTAGAAAAAT-ATAA-AATATGA
*
94908 ACAAAAGCTCTTGAAAAATATAAAATA
1 ACAAAAGCTCTAGAAAAATATAAAATA
94935 CTTTGATCTA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
30 4 0.16
31 8 0.32
32 13 0.52
ACGTcount: A:0.59, C:0.10, G:0.10, T:0.20
Consensus pattern (30 bp):
ACAAAAGCTCTAGAAAAATATAAAATATGA
Found at i:95224 original size:19 final size:20
Alignment explanation
Indices: 95184--95235 Score: 79
Period size: 19 Copynumber: 2.6 Consensus size: 20
95174 TACAAGCCAA
95184 TGTATCGATACATATTTTTTG
1 TGTATCGATACATA-TTTTTG
*
95205 TGTATCAATACATA-TTTTG
1 TGTATCGATACATATTTTTG
95224 TGTATCGATACA
1 TGTATCGATACA
95236 AGTTTGGCTA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
19 16 0.55
21 13 0.45
ACGTcount: A:0.29, C:0.12, G:0.13, T:0.46
Consensus pattern (20 bp):
TGTATCGATACATATTTTTG
Found at i:97792 original size:13 final size:13
Alignment explanation
Indices: 97774--97798 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
97764 ATAATCACCC
97774 TGTATCGATACAT
1 TGTATCGATACAT
97787 TGTATCGATACA
1 TGTATCGATACA
97799 AAGAAAAATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:101169 original size:15 final size:15
Alignment explanation
Indices: 101149--101179 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
101139 ATTTCGTTTG
*
101149 GAGCTTCTTCATTTT
1 GAGCTTCCTCATTTT
101164 GAGCTTCCTCATTTT
1 GAGCTTCCTCATTTT
101179 G
1 G
101180 GACATTTTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.13, C:0.23, G:0.16, T:0.48
Consensus pattern (15 bp):
GAGCTTCCTCATTTT
Found at i:104944 original size:32 final size:30
Alignment explanation
Indices: 104908--104966 Score: 75
Period size: 32 Copynumber: 1.9 Consensus size: 30
104898 GAAATCAAAT
104908 ACAAAGAGCT-TAGAAAAATAATAACAATATGA
1 ACAAA-AGCTCTAGAAAAAT-ATAA-AATATGA
*
104940 ACAAAAGCTCTTGAAAAATATAAAATA
1 ACAAAAGCTCTAGAAAAATATAAAATA
104967 CTTTGATCTA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
30 4 0.16
31 8 0.32
32 13 0.52
ACGTcount: A:0.59, C:0.10, G:0.10, T:0.20
Consensus pattern (30 bp):
ACAAAAGCTCTAGAAAAATATAAAATATGA
Found at i:105265 original size:13 final size:13
Alignment explanation
Indices: 105247--105272 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
105237 ATATTTTTTG
105247 TGTATCGATACAT
1 TGTATCGATACAT
105260 TGTATCGATACAT
1 TGTATCGATACAT
105273 ATTTTTTATG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:105269 original size:34 final size:34
Alignment explanation
Indices: 105226--105324 Score: 175
Period size: 34 Copynumber: 3.0 Consensus size: 34
105216 TACAAGCCAA
105226 TGTATCGATACATATTTTTTGTGTATCGATACAT
1 TGTATCGATACATATTTTTTGTGTATCGATACAT
*
105260 TGTATCGATACATATTTTTTATGTATCGATACAT
1 TGTATCGATACATATTTTTTGTGTATCGATACAT
105294 TGTATCGATACATA--TTTTGTGTATCGATACA
1 TGTATCGATACATATTTTTTGTGTATCGATACA
105325 AGTTTGGCTA
Statistics
Matches: 63, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
32 16 0.25
34 47 0.75
ACGTcount: A:0.28, C:0.12, G:0.14, T:0.45
Consensus pattern (34 bp):
TGTATCGATACATATTTTTTGTGTATCGATACAT
Found at i:105299 original size:13 final size:13
Alignment explanation
Indices: 105281--105306 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
105271 ATATTTTTTA
105281 TGTATCGATACAT
1 TGTATCGATACAT
105294 TGTATCGATACAT
1 TGTATCGATACAT
105307 ATTTTGTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:106902 original size:18 final size:19
Alignment explanation
Indices: 106870--106908 Score: 62
Period size: 18 Copynumber: 2.1 Consensus size: 19
106860 AATAAATTTT
*
106870 TATAAAAAGGGGGAGAAGA
1 TATAAAAAGGAGGAGAAGA
106889 TATAAAAA-GAGGAGAAGA
1 TATAAAAAGGAGGAGAAGA
106907 TA
1 TA
106909 ATCGTTTAAG
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 11 0.58
19 8 0.42
ACGTcount: A:0.56, C:0.00, G:0.31, T:0.13
Consensus pattern (19 bp):
TATAAAAAGGAGGAGAAGA
Found at i:107535 original size:19 final size:20
Alignment explanation
Indices: 107492--107544 Score: 72
Period size: 19 Copynumber: 2.7 Consensus size: 20
107482 CACACCCAGA
*
107492 TGTATCGATACATGCTGCTT
1 TGTATCGATACATGCTGCAT
* *
107512 TGTATTGATACATG-TTCAT
1 TGTATCGATACATGCTGCAT
107531 TGTATCGATACATG
1 TGTATCGATACATG
107545 GCCAAATTGT
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
19 16 0.55
20 13 0.45
ACGTcount: A:0.25, C:0.15, G:0.19, T:0.42
Consensus pattern (20 bp):
TGTATCGATACATGCTGCAT
Found at i:108861 original size:153 final size:153
Alignment explanation
Indices: 108604--108887 Score: 464
Period size: 153 Copynumber: 1.9 Consensus size: 153
108594 GAAATAAGGC
* *
108604 CGGGGTTGAAGTATCCCTGATTGTGAAAAATTGGTGTTTTTGAAAATAAAATCGGAGTTGGAGTA
1 CGGGGTTGAAGTATCCCCGATTGTGAAAAATTGGTGTTTTCGAAAATAAAATCGGAGTTGGAGTA
* *
108669 TCCCCGATTATAGAAAATTGGTGTTTTGAAAATAAAATCGGGGTTGGAGTATCCCCGATTATAGA
66 TCCCCGATTATAGAAAATTAGTGTTTTGAAAATAAAATCGGGGTTGGAGTACCCCCGATTAT-GA
108734 AACTTGGTGTTTTGAAAATAAAAT
130 AACTTGGTGTTTTGAAAATAAAAT
* *
108758 CGGGGTTGGAGTATCCCCGATTGTGGAAAATTGGTG-TTTCGAAAATAAAATCGGAGTTGGAGTA
1 CGGGGTTGAAGTATCCCCGATTGTGAAAAATTGGTGTTTTCGAAAATAAAATCGGAGTTGGAGTA
* *
108822 TCCCCGATTGTGGAAAATTAGTGTTTT-AGAAATAAAATCGGGGTTGGAGTACCCCCGATTATGA
66 TCCCCGATTATAGAAAATTAGTGTTTTGA-AAATAAAATCGGGGTTGGAGTACCCCCGATTATGA
108886 AA
130 AA
108888 AATGGAGAAA
Statistics
Matches: 121, Mismatches: 8, Indels: 4
0.91 0.06 0.03
Matches are distributed among these distances:
152 5 0.04
153 83 0.69
154 33 0.27
ACGTcount: A:0.32, C:0.11, G:0.26, T:0.31
Consensus pattern (153 bp):
CGGGGTTGAAGTATCCCCGATTGTGAAAAATTGGTGTTTTCGAAAATAAAATCGGAGTTGGAGTA
TCCCCGATTATAGAAAATTAGTGTTTTGAAAATAAAATCGGGGTTGGAGTACCCCCGATTATGAA
ACTTGGTGTTTTGAAAATAAAAT
Found at i:108890 original size:51 final size:51
Alignment explanation
Indices: 108553--108890 Score: 405
Period size: 51 Copynumber: 6.6 Consensus size: 51
108543 TCGAAAATAA
* * *** * ***
108553 CGGGGTTGGAGTGTCCCCGATTGTGAGAAATCAATATTTT-AGAAATAAGGC
1 CGGGGTTGGAGTATCCCCGATTGTGAAAAATTGGTGTTTTGA-AAATAAAAT
* *
108604 CGGGGTTGAAGTATCCCTGATTGTGAAAAATTGGTGTTTTTGAAAATAAAAT
1 CGGGGTTGGAGTATCCCCGATTGTGAAAAATTGGTG-TTTTGAAAATAAAAT
* *
108656 CGGAGTTGGAGTATCCCCGATTAT-AGAAAATTGGTGTTTTGAAAATAAAAT
1 CGGGGTTGGAGTATCCCCGATTGTGA-AAAATTGGTGTTTTGAAAATAAAAT
* *
108707 CGGGGTTGGAGTATCCCCGATTAT-AGAAACTTGGTGTTTTGAAAATAAAAT
1 CGGGGTTGGAGTATCCCCGATTGTGA-AAAATTGGTGTTTTGAAAATAAAAT
* *
108758 CGGGGTTGGAGTATCCCCGATTGTGGAAAATTGGTGTTTCGAAAATAAAAT
1 CGGGGTTGGAGTATCCCCGATTGTGAAAAATTGGTGTTTTGAAAATAAAAT
* * *
108809 CGGAGTTGGAGTATCCCCGATTGTGGAAAATTAGTGTTTT-AGAAATAAAAT
1 CGGGGTTGGAGTATCCCCGATTGTGAAAAATTGGTGTTTTGA-AAATAAAAT
* *
108860 CGGGGTTGGAGTACCCCCGATTATGAAAAAT
1 CGGGGTTGGAGTATCCCCGATTGTGAAAAAT
108891 GGAGAAACTT
Statistics
Matches: 254, Mismatches: 28, Indels: 10
0.87 0.10 0.03
Matches are distributed among these distances:
50 1 0.00
51 212 0.83
52 40 0.16
53 1 0.00
ACGTcount: A:0.32, C:0.12, G:0.27, T:0.30
Consensus pattern (51 bp):
CGGGGTTGGAGTATCCCCGATTGTGAAAAATTGGTGTTTTGAAAATAAAAT
Found at i:111253 original size:20 final size:21
Alignment explanation
Indices: 111228--111269 Score: 77
Period size: 20 Copynumber: 2.0 Consensus size: 21
111218 AAACTTCCTA
111228 GATGTATCGATACAATG-ATC
1 GATGTATCGATACAATGTATC
111248 GATGTATCGATACAATGTATC
1 GATGTATCGATACAATGTATC
111269 G
1 G
111270 TTACACTTCC
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 17 0.81
21 4 0.19
ACGTcount: A:0.33, C:0.14, G:0.21, T:0.31
Consensus pattern (21 bp):
GATGTATCGATACAATGTATC
Found at i:111285 original size:21 final size:21
Alignment explanation
Indices: 111261--111302 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
111251 GTATCGATAC
*
111261 AATGTATCGTTACACTTCCTT
1 AATGTATCGATACACTTCCTT
*
111282 AATGTATCGATACATTTCCTT
1 AATGTATCGATACACTTCCTT
111303 GGCAGTAGCT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.26, C:0.21, G:0.10, T:0.43
Consensus pattern (21 bp):
AATGTATCGATACACTTCCTT
Found at i:111351 original size:19 final size:18
Alignment explanation
Indices: 111327--111476 Score: 87
Period size: 19 Copynumber: 8.8 Consensus size: 18
111317 AGCGATACAT
111327 TGTATCGATACAAAACTTA
1 TGTATCGATAC-AAACTTA
*
111346 TGTATCGAT----ACGT-
1 TGTATCGATACAAACTTA
111359 TGTATCGATACAACACTTA
1 TGTATCGATACAA-ACTTA
*
111378 TGTATCGAT----ACGT-
1 TGTATCGATACAAACTTA
111391 TGTATCGATACAACACTTA
1 TGTATCGATACAA-ACTTA
*
111410 TGTATCGAT----ACGT-
1 TGTATCGATACAAACTTA
111423 TGTATCGATACAACACTTA
1 TGTATCGATACAA-ACTTA
* *
111442 TGTATCGATACATTTACTGTT
1 TGTATCGATACA--AACT-TA
111463 TGTATCGATACAAA
1 TGTATCGATACAAA
111477 TTGTTTGAAA
Statistics
Matches: 101, Mismatches: 9, Indels: 42
0.66 0.06 0.28
Matches are distributed among these distances:
13 27 0.27
14 9 0.09
18 9 0.09
19 40 0.40
20 3 0.03
21 13 0.13
ACGTcount: A:0.33, C:0.17, G:0.15, T:0.35
Consensus pattern (18 bp):
TGTATCGATACAAACTTA
Found at i:111362 original size:32 final size:32
Alignment explanation
Indices: 111319--111452 Score: 250
Period size: 32 Copynumber: 4.2 Consensus size: 32
111309 AGCTTCGTAG
* *
111319 CGATACATTGTATCGATACAAAACTTATGTAT
1 CGATACGTTGTATCGATACAACACTTATGTAT
111351 CGATACGTTGTATCGATACAACACTTATGTAT
1 CGATACGTTGTATCGATACAACACTTATGTAT
111383 CGATACGTTGTATCGATACAACACTTATGTAT
1 CGATACGTTGTATCGATACAACACTTATGTAT
111415 CGATACGTTGTATCGATACAACACTTATGTAT
1 CGATACGTTGTATCGATACAACACTTATGTAT
111447 CGATAC
1 CGATAC
111453 ATTTACTGTT
Statistics
Matches: 100, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
32 100 1.00
ACGTcount: A:0.33, C:0.19, G:0.15, T:0.34
Consensus pattern (32 bp):
CGATACGTTGTATCGATACAACACTTATGTAT
Found at i:111483 original size:19 final size:19
Alignment explanation
Indices: 111422--111483 Score: 63
Period size: 19 Copynumber: 3.2 Consensus size: 19
111412 TATCGATACG
111422 TTGTATCGATACAACACT-T
1 TTGTATCGATACAA-ACTGT
* *
111441 ATGTATCGATACATTTACTGT
1 TTGTATCGATACA--AACTGT
*
111462 TTGTATCGATACAAATTGT
1 TTGTATCGATACAAACTGT
111481 TTG
1 TTG
111484 AAATTCAAAA
Statistics
Matches: 35, Mismatches: 5, Indels: 6
0.76 0.11 0.13
Matches are distributed among these distances:
19 19 0.54
20 3 0.09
21 13 0.37
ACGTcount: A:0.29, C:0.15, G:0.15, T:0.42
Consensus pattern (19 bp):
TTGTATCGATACAAACTGT
Found at i:112100 original size:40 final size:42
Alignment explanation
Indices: 112056--112155 Score: 107
Period size: 42 Copynumber: 2.4 Consensus size: 42
112046 TATCCCACTT
* *
112056 TTGAGGACAAAGGAAAAG-AG-AATGAAATAG-GTCTTGCTCC
1 TTGAGGACAAAGGAAAAGAAGAAAAGAAA-AGTGTCCTGCTCC
* * * *
112096 TTGAGGACAAAAGAAGAGAAGAAAAGGAAAGTGTCCTGCTTC
1 TTGAGGACAAAGGAAAAGAAGAAAAGAAAAGTGTCCTGCTCC
112138 TTGAGGACAAAGTGAAAA
1 TTGAGGACAAAG-GAAAA
112156 AGAGTATGTC
Statistics
Matches: 48, Mismatches: 8, Indels: 5
0.79 0.13 0.08
Matches are distributed among these distances:
40 16 0.33
41 4 0.08
42 24 0.50
43 4 0.08
ACGTcount: A:0.43, C:0.11, G:0.28, T:0.18
Consensus pattern (42 bp):
TTGAGGACAAAGGAAAAGAAGAAAAGAAAAGTGTCCTGCTCC
Found at i:112388 original size:55 final size:55
Alignment explanation
Indices: 112248--113161 Score: 1048
Period size: 55 Copynumber: 16.3 Consensus size: 55
112238 ATAAAGTGCA
* * *
112248 TCCTGTTCTTTGAGGACT-AAAAAGTGCCACCAACTCGTGTGGGCTTTGAAAAGGAAAGGCG
1 TCCTGCTCTTTGAGGACTGGAAAA-TGCCACCAACTTGTGTGGGCTTT------GAAAGGCG
* * *
112309 TCATGCTCTTTGAGGATTGGAAAATGCCACTAACTTGTGTGGGCTTT-AAGAGGCG
1 TCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAA-AGGCG
* *
112364 TCCTGCTCTTTGGGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTAAAAAGAAAAGGTG
1 TCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTT-----G-AAAGGCG
* * * * * *
112425 TCTTGCTCTTTGAGGATTAGAAGATGCCACCAACTCGTGTGGGCTTTGAAAGGCA
1 TCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGCG
* * * * * *
112480 TCCTGCTCTTTGAGGATTGGGAAGTGGCACCAACTTGTGTGGGCTTTAAAAGGAG
1 TCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGCG
*
112535 TCCTGCTCTTTGAGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGCG
1 TCCTGCTCTTTGAGGACTGGAAA-ATGCCACCAACTTGTGTGGGCTTTGAAAGGCG
* * * * *
112590 TCCTGCTCTTTGAGGATTAGAAGATGCCACCAACTCGTGTGGGCTTTGAAAGGCA
1 TCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGCG
* * * * * *
112645 TCCCGCTCTTTGAGGGCTGGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAG
1 TCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGCG
* *
112700 TCCTGCTCTTTGAGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGCA
1 TCCTGCTCTTTGAGGACTGGAAA-ATGCCACCAACTTGTGTGGGCTTTGAAAGGCG
*
112755 TCCTGCTCTTTGAGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGCG
1 TCCTGCTCTTTGAGGACTGGAAA-ATGCCACCAACTTGTGTGGGCTTTGAAAGGCG
* * * * *
112810 TCCTGCTCTTTGAGGATTAGAAGATGCCACCAACTCGTGTGGGCTTTGAAAGGCA
1 TCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGCG
* * * * *
112865 TCCCGCTCTTTGAGGACTGGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAG
1 TCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGCG
*
112920 TCCTGCTCTTTGAGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGCG
1 TCCTGCTCTTTGAGGACTGGAAA-ATGCCACCAACTTGTGTGGGCTTTGAAAGGCG
* * *
112975 TCCTGCTCTTTGAGGACTAGAAAAGTGCCACCAACTTGTGAGGGCTTTAAAAGGCG
1 TCCTGCTCTTTGAGGACTGGAAAA-TGCCACCAACTTGTGTGGGCTTTGAAAGGCG
*
113031 TCCTGCTCTTTGAGGACTGAAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGAAATGGCG
1 TCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTT-----GAAA-GGCG
** * *
113092 TCCTGCTCTTTGAGGACTATAAAAGTGCCACCAACTTGTGTGGGCATTAAAAGGCG
1 TCCTGCTCTTTGAGGACTGGAAAA-TGCCACCAACTTGTGTGGGCTTTGAAAGGCG
* *
113148 TCTTACTCTTTGAG
1 TCCTGCTCTTTGAG
113162 ACTAAAGGGC
Statistics
Matches: 741, Mismatches: 89, Indels: 51
0.84 0.10 0.06
Matches are distributed among these distances:
54 11 0.01
55 511 0.69
56 78 0.11
57 3 0.00
60 3 0.00
61 107 0.14
62 28 0.04
ACGTcount: A:0.23, C:0.20, G:0.29, T:0.27
Consensus pattern (55 bp):
TCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGCG
Found at i:113016 original size:28 final size:27
Alignment explanation
Indices: 112985--113069 Score: 64
Period size: 28 Copynumber: 3.1 Consensus size: 27
112975 TCCTGCTCTT
112985 TGAGGACTAGAAAAGTGCCACCAACTTG
1 TGAGGACT-GAAAAGTGCCACCAACTTG
* * ** ** *
113013 TGAGGGCTTTAAAAG-GCGTCCTGCTCTT
1 TGAGGAC-TGAAAAGTGCCACCAACT-TG
*
113041 TGAGGACTGAAAAATGCCACCAACTTG
1 TGAGGACTGAAAAGTGCCACCAACTTG
113068 TG
1 TG
113070 TGGGCTTTGA
Statistics
Matches: 39, Mismatches: 15, Indels: 7
0.64 0.25 0.11
Matches are distributed among these distances:
27 14 0.36
28 24 0.62
29 1 0.03
ACGTcount: A:0.29, C:0.21, G:0.26, T:0.24
Consensus pattern (27 bp):
TGAGGACTGAAAAGTGCCACCAACTTG
Found at i:113298 original size:60 final size:59
Alignment explanation
Indices: 113183--113327 Score: 200
Period size: 60 Copynumber: 2.4 Consensus size: 59
113173 AAAGGAGAGA
113183 GCGTCCTGCTCTTTGAGGACTAGGAAGTGCCACCAACTTGTGTAAGCTTTAAAAGGAAAAG
1 GCGTCCTGCTCTTTGAGGACT--GAAGTGCCACCAACTTGTGTAAGCTTTAAAAGGAAAAG
* * ** *
113244 GCGTCATGCTCTTTGAGGACTGAAGGTGCCACCAGCTTGTGTGGGCTTTAAAAGGCAAAG
1 GCGTCCTGCTCTTTGAGGACTGAA-GTGCCACCAACTTGTGTAAGCTTTAAAAGGAAAAG
* *
113304 GCATCCTGCTCTTTGAGGATTGAA
1 GCGTCCTGCTCTTTGAGGACTGAA
113328 AAGTGGAAGG
Statistics
Matches: 75, Mismatches: 8, Indels: 3
0.87 0.09 0.03
Matches are distributed among these distances:
59 3 0.04
60 52 0.69
61 20 0.27
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.26
Consensus pattern (59 bp):
GCGTCCTGCTCTTTGAGGACTGAAGTGCCACCAACTTGTGTAAGCTTTAAAAGGAAAAG
Found at i:114333 original size:23 final size:24
Alignment explanation
Indices: 114300--114354 Score: 85
Period size: 24 Copynumber: 2.3 Consensus size: 24
114290 CTTTTCTCTC
* *
114300 TTTTTTCTTTG-TTTTGTTTTTTT
1 TTTTTTTTTTGCTTTTGTTTTTGT
114323 TTTTTTTTTTGCTTTTGTTTTTGT
1 TTTTTTTTTTGCTTTTGTTTTTGT
114347 TTTTTTTT
1 TTTTTTTT
114355 AGAAGAATGT
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
23 10 0.34
24 19 0.66
ACGTcount: A:0.00, C:0.04, G:0.09, T:0.87
Consensus pattern (24 bp):
TTTTTTTTTTGCTTTTGTTTTTGT
Found at i:127072 original size:153 final size:153
Alignment explanation
Indices: 126753--127088 Score: 392
Period size: 153 Copynumber: 2.2 Consensus size: 153
126743 TCGAAAATAA
* * * **
126753 CGGGGTTGGAGTGTCCCCGATTGTGAGAAATCAATATTTTAGAAATAAGGCCGGGGTTGAAGTAT
1 CGGGGTTGGAGTATCCCCGATTATGA-AAATCAATATTTTAAAAATAAAACCGGGGTTGAAGTAT
* ** * * *
126818 CTCTGATTGTGAAAAATTGGTGTTTTTGGAAATAAAATCGGAGTTGGAGTATCCCTGATTATAGA
65 CCCCAATTGTGAAAAATTGGTGTTTTCGAAAATAAAATCGGAGTTGGAGTATCCCCGATTATAGA
* *
126883 AAATTGGTGTTTTGAAAATAAAAT
130 AAATTAGTGTTTTGAAAATAAAAC
* * *** * *
126907 CAGAGTTGGAGTATCCCCGATTATAGAAAATTGGTGTTTTAAAAATAAAACCGGGGTTGGAGTAT
1 CGGGGTTGGAGTATCCCCGATTAT-GAAAATCAATATTTTAAAAATAAAACCGGGGTTGAAGTAT
* * *
126972 CCCCAATTGTGGAAAATTGGTG-TTTCGAAAATAAAATCGGAGTTTGAGTATCCCCGATTGT-GA
65 CCCCAATTGTGAAAAATTGGTGTTTTCGAAAATAAAATCGGAGTTGGAGTATCCCCGATTATAG-
127035 AAAATTAGTGTTTT-AGAAATAAAAC
129 AAAATTAGTGTTTTGA-AAATAAAAC
127060 CGGGGTTGGAGTA-CCCTCGATTATGAAAA
1 CGGGGTTGGAGTATCCC-CGATTATGAAAA
127089 ATGGAGAAAT
Statistics
Matches: 153, Mismatches: 25, Indels: 10
0.81 0.13 0.05
Matches are distributed among these distances:
152 10 0.07
153 73 0.48
154 68 0.44
155 2 0.01
ACGTcount: A:0.33, C:0.11, G:0.25, T:0.31
Consensus pattern (153 bp):
CGGGGTTGGAGTATCCCCGATTATGAAAATCAATATTTTAAAAATAAAACCGGGGTTGAAGTATC
CCCAATTGTGAAAAATTGGTGTTTTCGAAAATAAAATCGGAGTTGGAGTATCCCCGATTATAGAA
AATTAGTGTTTTGAAAATAAAAC
Found at i:127089 original size:51 final size:51
Alignment explanation
Indices: 126753--127090 Score: 326
Period size: 51 Copynumber: 6.6 Consensus size: 51
126743 TCGAAAATAA
* * *** * **
126753 CGGGGTTGGAGTGTCCCCGATTGTGAGAAATCAATATTTTAGAAATAAGGC
1 CGGGGTTGGAGTATCCCCGATTGTGAAAAATTGGTGTTTTAGAAATAAAAC
* * * * *
126804 CGGGGTTGAAGTATCTCTGATTGTGAAAAATTGGTGTTTTTGGAAATAAAAT
1 CGGGGTTGGAGTATCCCCGATTGTGAAAAATTGGTG-TTTTAGAAATAAAAC
* * * *
126856 CGGAGTTGGAGTATCCCTGATTAT-AGAAAATTGGTGTTTT-GAAAATAAAAT
1 CGGGGTTGGAGTATCCCCGATTGTGA-AAAATTGGTGTTTTAG-AAATAAAAC
* * * *
126907 CAGAGTTGGAGTATCCCCGATTAT-AGAAAATTGGTGTTTTAAAAATAAAAC
1 CGGGGTTGGAGTATCCCCGATTGTGA-AAAATTGGTGTTTTAGAAATAAAAC
* * * *
126958 CGGGGTTGGAGTATCCCCAATTGTGGAAAATTGGTG-TTTCGAAAATAAAAT
1 CGGGGTTGGAGTATCCCCGATTGTGAAAAATTGGTGTTTTAG-AAATAAAAC
* * *
127009 CGGAGTTTGAGTATCCCCGATTGTGAAAAATTAGTGTTTTAGAAATAAAAC
1 CGGGGTTGGAGTATCCCCGATTGTGAAAAATTGGTGTTTTAGAAATAAAAC
*
127060 CGGGGTTGGAGTA-CCCTCGATTATGAAAAAT
1 CGGGGTTGGAGTATCCC-CGATTGTGAAAAAT
127091 GGAGAAATTT
Statistics
Matches: 240, Mismatches: 39, Indels: 16
0.81 0.13 0.05
Matches are distributed among these distances:
50 7 0.03
51 188 0.78
52 45 0.19
ACGTcount: A:0.33, C:0.11, G:0.25, T:0.31
Consensus pattern (51 bp):
CGGGGTTGGAGTATCCCCGATTGTGAAAAATTGGTGTTTTAGAAATAAAAC
Found at i:127090 original size:102 final size:103
Alignment explanation
Indices: 126808--127090 Score: 369
Period size: 102 Copynumber: 2.8 Consensus size: 103
126798 TAAGGCCGGG
* * * * * *
126808 GTTGAAGTATCTCTGATTGTGAAAAATTGGTGTTTTTGGAAATAAAATCGGAGTTGGAGTATCCC
1 GTTGGAGTATCCCCGATTGTGAAAAATTGGTG-TTTTAGAAATAAAACCGGGGTTGGAGTATCCC
*
126873 T-GATTAT-AGAAAATTGGTGTTTTGAAAATAAAATCAGA
65 TCGATTATGA-AAAATTGGTGTTTCGAAAATAAAATCAGA
* *
126911 GTTGGAGTATCCCCGATTAT-AGAAAATTGGTGTTTTAAAAATAAAACCGGGGTTGGAGTATCCC
1 GTTGGAGTATCCCCGATTGTGA-AAAATTGGTGTTTTAGAAATAAAACCGGGGTTGGAGTATCCC
* * * *
126975 -CAATTGTGGAAAATTGGTGTTTCGAAAATAAAATCGGA
65 TCGATTATGAAAAATTGGTGTTTCGAAAATAAAATCAGA
* *
127013 GTTTGAGTATCCCCGATTGTGAAAAATTAGTGTTTTAGAAATAAAACCGGGGTTGGAGTA-CCCT
1 GTTGGAGTATCCCCGATTGTGAAAAATTGGTGTTTTAGAAATAAAACCGGGGTTGGAGTATCCCT
127077 CGATTATGAAAAAT
66 CGATTATGAAAAAT
127091 GGAGAAATTT
Statistics
Matches: 155, Mismatches: 20, Indels: 11
0.83 0.11 0.06
Matches are distributed among these distances:
101 3 0.02
102 125 0.81
103 27 0.17
ACGTcount: A:0.34, C:0.10, G:0.24, T:0.32
Consensus pattern (103 bp):
GTTGGAGTATCCCCGATTGTGAAAAATTGGTGTTTTAGAAATAAAACCGGGGTTGGAGTATCCCT
CGATTATGAAAAATTGGTGTTTCGAAAATAAAATCAGA
Found at i:129472 original size:21 final size:21
Alignment explanation
Indices: 129446--129486 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
129436 ACAAAGATCG
129446 ATGTATCGATACACTTCCTTA
1 ATGTATCGATACACTTCCTTA
*
129467 ATGTATCGATACATTTCCTT
1 ATGTATCGATACACTTCCTT
129487 GGCAGTAGCT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.27, C:0.22, G:0.10, T:0.41
Consensus pattern (21 bp):
ATGTATCGATACACTTCCTTA
Found at i:129538 original size:19 final size:19
Alignment explanation
Indices: 129511--129596 Score: 67
Period size: 19 Copynumber: 4.7 Consensus size: 19
129501 AGCGATACAT
*
129511 TGTAGCGATACAAAACTTA
1 TGTATCGATACAAAACTTA
129530 TGTATCGATAC---A--T-
1 TGTATCGATACAAAACTTA
*
129543 TGTATCGATACAACACTTA
1 TGTATCGATACAAAACTTA
** *
129562 TGTATCGATACATTTACTGTT
1 TGTATCGATACA-AAACT-TA
129583 TGTATCGATACAAA
1 TGTATCGATACAAA
129597 TTGTTTGAAA
Statistics
Matches: 53, Mismatches: 6, Indels: 15
0.72 0.08 0.20
Matches are distributed among these distances:
13 11 0.21
14 1 0.02
16 2 0.04
18 1 0.02
19 22 0.42
20 3 0.06
21 13 0.25
ACGTcount: A:0.35, C:0.16, G:0.14, T:0.35
Consensus pattern (19 bp):
TGTATCGATACAAAACTTA
Found at i:129544 original size:32 final size:32
Alignment explanation
Indices: 129503--129575 Score: 128
Period size: 32 Copynumber: 2.3 Consensus size: 32
129493 AGCTTCGTAG
129503 CGATACATTGTAGCGATACAAAACTTATGTAT
1 CGATACATTGTAGCGATACAAAACTTATGTAT
* *
129535 CGATACATTGTATCGATACAACACTTATGTAT
1 CGATACATTGTAGCGATACAAAACTTATGTAT
129567 CGATACATT
1 CGATACATT
129576 TACTGTTTGT
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
32 39 1.00
ACGTcount: A:0.36, C:0.18, G:0.14, T:0.33
Consensus pattern (32 bp):
CGATACATTGTAGCGATACAAAACTTATGTAT
Found at i:129548 original size:13 final size:13
Alignment explanation
Indices: 129530--129554 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
129520 ACAAAACTTA
129530 TGTATCGATACAT
1 TGTATCGATACAT
129543 TGTATCGATACA
1 TGTATCGATACA
129555 ACACTTATGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:129603 original size:19 final size:19
Alignment explanation
Indices: 129542--129603 Score: 63
Period size: 19 Copynumber: 3.2 Consensus size: 19
129532 TATCGATACA
129542 TTGTATCGATACAACACT-T
1 TTGTATCGATACAA-ACTGT
* *
129561 ATGTATCGATACATTTACTGT
1 TTGTATCGATACA--AACTGT
*
129582 TTGTATCGATACAAATTGT
1 TTGTATCGATACAAACTGT
129601 TTG
1 TTG
129604 AAATTCAAAA
Statistics
Matches: 35, Mismatches: 5, Indels: 6
0.76 0.11 0.13
Matches are distributed among these distances:
19 19 0.54
20 3 0.09
21 13 0.37
ACGTcount: A:0.29, C:0.15, G:0.15, T:0.42
Consensus pattern (19 bp):
TTGTATCGATACAAACTGT
Found at i:129907 original size:13 final size:13
Alignment explanation
Indices: 129886--129916 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
129876 CGATACATGG
*
129886 TACAATGTATCGA
1 TACATTGTATCGA
129899 TACATTGTATCGA
1 TACATTGTATCGA
129912 TACAT
1 TACAT
129917 GAAGAAATGT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.35, C:0.16, G:0.13, T:0.35
Consensus pattern (13 bp):
TACATTGTATCGA
Found at i:129912 original size:33 final size:32
Alignment explanation
Indices: 129870--129936 Score: 100
Period size: 33 Copynumber: 2.0 Consensus size: 32
129860 CTATCACTAT
129870 TTGTATCGATACATG-GTACAATGTATCGATACA
1 TTGTATCGATACATGAG-A-AATGTATCGATACA
129903 TTGTATCGATACATGAAGAAATGTATCGATACA
1 TTGTATCGATACATG-AGAAATGTATCGATACA
129936 T
1 T
129937 AGCATGTAAC
Statistics
Matches: 32, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
33 30 0.94
34 1 0.03
35 1 0.03
ACGTcount: A:0.36, C:0.13, G:0.18, T:0.33
Consensus pattern (32 bp):
TTGTATCGATACATGAGAAATGTATCGATACA
Found at i:137272 original size:13 final size:13
Alignment explanation
Indices: 137254--137278 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
137244 CATAAAGTGT
137254 TGTATCGATACAA
1 TGTATCGATACAA
137267 TGTATCGATACA
1 TGTATCGATACA
137279 TATTTTTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:137276 original size:33 final size:33
Alignment explanation
Indices: 137234--137300 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
137224 TTCAACGATT
137234 TGTATCGATACATAAAGTGTTGTATCGATACAA
1 TGTATCGATACATAAAGTGTTGTATCGATACAA
*** *
137267 TGTATCGATACATATTTTTTTGTATCGATACAA
1 TGTATCGATACATAAAGTGTTGTATCGATACAA
137300 T
1 T
137301 TTAAGCTACT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.33, C:0.12, G:0.15, T:0.40
Consensus pattern (33 bp):
TGTATCGATACATAAAGTGTTGTATCGATACAA
Found at i:138122 original size:13 final size:13
Alignment explanation
Indices: 138104--138129 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
138094 CAATTTTTTG
138104 TGTATCGATACAT
1 TGTATCGATACAT
138117 TGTATCGATACAT
1 TGTATCGATACAT
138130 ACTTGCTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:138214 original size:20 final size:20
Alignment explanation
Indices: 138189--138261 Score: 101
Period size: 20 Copynumber: 3.6 Consensus size: 20
138179 CAACTTTTTT
138189 ATGTATCGATACATTGCAAC
1 ATGTATCGATACATTGCAAC
****
138209 ATGTATCGATACATCTTTTTC
1 ATGTATCGATACAT-TGCAAC
138230 ATGTATCGATACATTGCAAC
1 ATGTATCGATACATTGCAAC
138250 ATGTATCGATAC
1 ATGTATCGATAC
138262 TTTGAATTGT
Statistics
Matches: 44, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
20 28 0.64
21 16 0.36
ACGTcount: A:0.32, C:0.19, G:0.14, T:0.36
Consensus pattern (20 bp):
ATGTATCGATACATTGCAAC
Found at i:138227 original size:41 final size:41
Alignment explanation
Indices: 138168--138261 Score: 170
Period size: 41 Copynumber: 2.3 Consensus size: 41
138158 CTGCCAAGAA
*
138168 ATGTATCGATACAACTTTTTTATGTATCGATACATTGCAAC
1 ATGTATCGATACAACTTTTTCATGTATCGATACATTGCAAC
*
138209 ATGTATCGATACATCTTTTTCATGTATCGATACATTGCAAC
1 ATGTATCGATACAACTTTTTCATGTATCGATACATTGCAAC
138250 ATGTATCGATAC
1 ATGTATCGATAC
138262 TTTGAATTGT
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
41 51 1.00
ACGTcount: A:0.31, C:0.18, G:0.13, T:0.38
Consensus pattern (41 bp):
ATGTATCGATACAACTTTTTCATGTATCGATACATTGCAAC
Found at i:138243 original size:21 final size:21
Alignment explanation
Indices: 138168--138243 Score: 91
Period size: 21 Copynumber: 3.7 Consensus size: 21
138158 CTGCCAAGAA
* *
138168 ATGTATCGATACAACTTTTTT
1 ATGTATCGATACATCTTTTTC
****
138189 ATGTATCGATACAT-TGCAAC
1 ATGTATCGATACATCTTTTTC
138209 ATGTATCGATACATCTTTTTC
1 ATGTATCGATACATCTTTTTC
138230 ATGTATCGATACAT
1 ATGTATCGATACAT
138244 TGCAACATGT
Statistics
Matches: 44, Mismatches: 10, Indels: 2
0.79 0.18 0.04
Matches are distributed among these distances:
20 15 0.34
21 29 0.66
ACGTcount: A:0.30, C:0.17, G:0.12, T:0.41
Consensus pattern (21 bp):
ATGTATCGATACATCTTTTTC
Found at i:138922 original size:34 final size:34
Alignment explanation
Indices: 138882--138947 Score: 132
Period size: 34 Copynumber: 1.9 Consensus size: 34
138872 CCCGTTTATT
138882 AAAAAATCTCCCCCTTAATCAAGTAATTCATAAA
1 AAAAAATCTCCCCCTTAATCAAGTAATTCATAAA
138916 AAAAAATCTCCCCCTTAATCAAGTAATTCATA
1 AAAAAATCTCCCCCTTAATCAAGTAATTCATA
138948 TCAAAATTTA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 32 1.00
ACGTcount: A:0.45, C:0.24, G:0.03, T:0.27
Consensus pattern (34 bp):
AAAAAATCTCCCCCTTAATCAAGTAATTCATAAA
Found at i:140756 original size:13 final size:13
Alignment explanation
Indices: 140738--140788 Score: 93
Period size: 13 Copynumber: 3.9 Consensus size: 13
140728 ATAATCACCC
140738 TGTATCGATACAG
1 TGTATCGATACAG
140751 TGTATCGATACAG
1 TGTATCGATACAG
*
140764 TGTATCGATACAA
1 TGTATCGATACAG
140777 TGTATCGATACA
1 TGTATCGATACA
140789 AAGAAAAATG
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
13 37 1.00
ACGTcount: A:0.33, C:0.16, G:0.20, T:0.31
Consensus pattern (13 bp):
TGTATCGATACAG
Found at i:140800 original size:20 final size:20
Alignment explanation
Indices: 140775--140853 Score: 70
Period size: 20 Copynumber: 3.7 Consensus size: 20
140765 GTATCGATAC
140775 AATGTATCGATACAAAGAAA
1 AATGTATCGATACAAAGAAA
*
140795 AATGTATCGATACATAGAATTTCCA
1 AATGTATCGATACAAAGAA-----A
*
140820 GATGTATCGATACACAA-AAA
1 AATGTATCGATACA-AAGAAA
*
140840 CATGTATCGATACA
1 AATGTATCGATACA
140854 TTTTGGACAT
Statistics
Matches: 49, Mismatches: 4, Indels: 12
0.75 0.06 0.18
Matches are distributed among these distances:
20 32 0.65
25 16 0.33
26 1 0.02
ACGTcount: A:0.46, C:0.15, G:0.14, T:0.25
Consensus pattern (20 bp):
AATGTATCGATACAAAGAAA
Found at i:142889 original size:15 final size:15
Alignment explanation
Indices: 142869--142899 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
142859 ATTTCGTTTG
*
142869 GAGCTTCTTCATTTT
1 GAGCTTCCTCATTTT
142884 GAGCTTCCTCATTTT
1 GAGCTTCCTCATTTT
142899 G
1 G
142900 GACATTTTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.13, C:0.23, G:0.16, T:0.48
Consensus pattern (15 bp):
GAGCTTCCTCATTTT
Found at i:146980 original size:13 final size:13
Alignment explanation
Indices: 146962--146987 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
146952 CAATTTTTTG
146962 TGTATCGATACAT
1 TGTATCGATACAT
146975 TGTATCGATACAT
1 TGTATCGATACAT
146988 ACTTGCTATA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:147072 original size:20 final size:20
Alignment explanation
Indices: 147047--147119 Score: 101
Period size: 20 Copynumber: 3.6 Consensus size: 20
147037 CAACTTTTTT
147047 ATGTATCGATACATTGCAAC
1 ATGTATCGATACATTGCAAC
****
147067 ATGTATCGATACATCTTTTTC
1 ATGTATCGATACAT-TGCAAC
147088 ATGTATCGATACATTGCAAC
1 ATGTATCGATACATTGCAAC
147108 ATGTATCGATAC
1 ATGTATCGATAC
147120 TTTGAATTGT
Statistics
Matches: 44, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
20 28 0.64
21 16 0.36
ACGTcount: A:0.32, C:0.19, G:0.14, T:0.36
Consensus pattern (20 bp):
ATGTATCGATACATTGCAAC
Found at i:147085 original size:41 final size:41
Alignment explanation
Indices: 147026--147119 Score: 170
Period size: 41 Copynumber: 2.3 Consensus size: 41
147016 CTGCCAAGAA
*
147026 ATGTATCGATACAACTTTTTTATGTATCGATACATTGCAAC
1 ATGTATCGATACAACTTTTTCATGTATCGATACATTGCAAC
*
147067 ATGTATCGATACATCTTTTTCATGTATCGATACATTGCAAC
1 ATGTATCGATACAACTTTTTCATGTATCGATACATTGCAAC
147108 ATGTATCGATAC
1 ATGTATCGATAC
147120 TTTGAATTGT
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
41 51 1.00
ACGTcount: A:0.31, C:0.18, G:0.13, T:0.38
Consensus pattern (41 bp):
ATGTATCGATACAACTTTTTCATGTATCGATACATTGCAAC
Found at i:147101 original size:21 final size:21
Alignment explanation
Indices: 147026--147101 Score: 91
Period size: 21 Copynumber: 3.7 Consensus size: 21
147016 CTGCCAAGAA
* *
147026 ATGTATCGATACAACTTTTTT
1 ATGTATCGATACATCTTTTTC
****
147047 ATGTATCGATACAT-TGCAAC
1 ATGTATCGATACATCTTTTTC
147067 ATGTATCGATACATCTTTTTC
1 ATGTATCGATACATCTTTTTC
147088 ATGTATCGATACAT
1 ATGTATCGATACAT
147102 TGCAACATGT
Statistics
Matches: 44, Mismatches: 10, Indels: 2
0.79 0.18 0.04
Matches are distributed among these distances:
20 15 0.34
21 29 0.66
ACGTcount: A:0.30, C:0.17, G:0.12, T:0.41
Consensus pattern (21 bp):
ATGTATCGATACATCTTTTTC
Found at i:147475 original size:52 final size:51
Alignment explanation
Indices: 147414--147562 Score: 208
Period size: 52 Copynumber: 2.9 Consensus size: 51
147404 CCTAACACAT
** *
147414 TGTATCGATACACTGATCTTTGTATCGATACATGCAGACAAATTTGCCCAGA
1 TGTATCGATACACT-ATCAATGTATCGATACATGCAGGCAAATTTGCCCAGA
* * * *
147466 TGTATCGATACATTATAAAATGTATCAATACATGCAGGCAAATTTGCCGAGA
1 TGTATCGATACACTAT-CAATGTATCGATACATGCAGGCAAATTTGCCCAGA
147518 TGTATCGATACACTATTCAATGTATCGATACATGCAGGCAAATTT
1 TGTATCGATACACTA-TCAATGTATCGATACATGCAGGCAAATTT
147563 TCATATTTCG
Statistics
Matches: 85, Mismatches: 10, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
51 2 0.02
52 82 0.96
53 1 0.01
ACGTcount: A:0.34, C:0.18, G:0.17, T:0.31
Consensus pattern (51 bp):
TGTATCGATACACTATCAATGTATCGATACATGCAGGCAAATTTGCCCAGA
Found at i:152961 original size:12 final size:12
Alignment explanation
Indices: 152944--152978 Score: 54
Period size: 12 Copynumber: 2.9 Consensus size: 12
152934 TACCTTATTT
152944 CAAAAAACAAAA
1 CAAAAAACAAAA
152956 CAAAAAAC-AAA
1 CAAAAAACAAAA
152967 CAAACAAACAAA
1 CAAA-AAACAAA
152979 GCTCCAACCC
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
11 7 0.33
12 12 0.57
13 2 0.10
ACGTcount: A:0.80, C:0.20, G:0.00, T:0.00
Consensus pattern (12 bp):
CAAAAAACAAAA
Found at i:154100 original size:22 final size:23
Alignment explanation
Indices: 154075--154131 Score: 80
Period size: 22 Copynumber: 2.5 Consensus size: 23
154065 GGTTTAACAA
* *
154075 ATGATACCTAAAGGTTTTG-GAG
1 ATGATATCTAAAGGTTTTGAAAG
*
154097 ATGATATCTAGAGGTTTTGAAAG
1 ATGATATCTAAAGGTTTTGAAAG
154120 ATGATATCTAAA
1 ATGATATCTAAA
154132 TTTTTAAAAA
Statistics
Matches: 30, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
22 17 0.57
23 13 0.43
ACGTcount: A:0.37, C:0.07, G:0.23, T:0.33
Consensus pattern (23 bp):
ATGATATCTAAAGGTTTTGAAAG
Found at i:155761 original size:24 final size:23
Alignment explanation
Indices: 155728--155790 Score: 74
Period size: 24 Copynumber: 2.7 Consensus size: 23
155718 ATTTATAAAC
155728 TAAATT-AAATTTAATTTAATTT
1 TAAATTAAAATTTAATTTAATTT
**
155750 TAAACTTAAAATTTAAATTTTTTTT
1 TAAA-TTAAAATTT-AATTTAATTT
*
155775 TAAATTATAATTTAAT
1 TAAATTAAAATTTAAT
155791 GTAACTCGAG
Statistics
Matches: 35, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
22 4 0.11
23 5 0.14
24 14 0.40
25 12 0.34
ACGTcount: A:0.44, C:0.02, G:0.00, T:0.54
Consensus pattern (23 bp):
TAAATTAAAATTTAATTTAATTT
Found at i:162899 original size:167 final size:166
Alignment explanation
Indices: 162475--162975 Score: 715
Period size: 166 Copynumber: 3.0 Consensus size: 166
162465 AATCTTTCTA
* * * * *
162475 TTTTTAAATTACGG-AGTTTCTTCTCCGTAAATTTTTTCGAGGATATTTTTTTTGGTTTTCAATT
1 TTTTTAAAATACGGTATTTTCTACTCCGTAAATTTTTTCGAGGAGATTTTTCTTGGTTTTCAATT
*
162539 TTTAAAATTCATCAAATATTGTTATTTATTTTATATTAATTCAGTTTTCAAAAATTCATTCATTT
66 TTTAAAATTCATCAAACATTGTTATTTATTTTATATTAATTCAGTTTTCAAAAATTCATTCATTT
162604 TCATTCATTTTTTATTTTTTT-TCTTGAAACTTCT-TT
131 TCATTCATTTTTTATTTTTTTCT-TTGAAACTT-TATT
* * * * *
162640 TTTTTGAAATACGATGTTTTCTACTCCGTAAATTTCTTCG-GGGGCATTTTTCTTGGTTTTCAAT
1 TTTTTAAAATACGGTATTTTCTACTCCGTAAATTTTTTCGAGGAG-ATTTTTCTTGGTTTTCAAT
* * *
162704 TTTTAAAATTCATCAAACATTGTTATTTATTTCATATTAATTTAGTTTTTAAAAATTCATTCATT
65 TTTTAAAATTCATCAAACATTGTTATTTATTTTATATTAATTCAGTTTTCAAAAATTCATTCATT
162769 TTCATTCATTTTTTATTTTTTTCTTTGAAACTTTATT
130 TTCATTCATTTTTTATTTTTTTCTTTGAAACTTTATT
*
162806 TTTTCTAAAATACGGTATTTTCTACTCCATAAATTTTTTCGAGGAGATTTTTCTTGGTTTTCAAT
1 TTTT-TAAAATACGGTATTTTCTACTCCGTAAATTTTTTCGAGGAGATTTTTCTTGGTTTTCAAT
** *
162871 TTTTAAAATTCATCAAACATCATTATTTATTTTATATTAATTCAATTTTCAAAAATTCATTCATT
65 TTTTAAAATTCATCAAACATTGTTATTTATTTTATATTAATTCAGTTTTCAAAAATTCATTCATT
* * * *
162936 TTCA-TGAGTTTTTGAATTTTTTCTTTGAAATCCTTATT
130 TTCATTCA-TTTTTTATTTTTTTCTTTGAAA-CTTTATT
162974 TT
1 TT
162976 CTAAAAAACC
Statistics
Matches: 298, Mismatches: 30, Indels: 13
0.87 0.09 0.04
Matches are distributed among these distances:
165 14 0.05
166 139 0.47
167 134 0.45
168 11 0.04
ACGTcount: A:0.27, C:0.12, G:0.08, T:0.54
Consensus pattern (166 bp):
TTTTTAAAATACGGTATTTTCTACTCCGTAAATTTTTTCGAGGAGATTTTTCTTGGTTTTCAATT
TTTAAAATTCATCAAACATTGTTATTTATTTTATATTAATTCAGTTTTCAAAAATTCATTCATTT
TCATTCATTTTTTATTTTTTTCTTTGAAACTTTATT
Done.