Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold175
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 1254584
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.32
File 1 of 8
Found at i:35 original size:15 final size:14
Alignment explanation
Indices: 12--7835 Score: 5715
Period size: 15 Copynumber: 529.0 Consensus size: 14
2 AAACCGAACA
*
12 CGAACCCCGAAACCC
1 CGAAACCCGAAA-CC
27 CGAAACCCGAAAACC
1 CGAAACCCG-AAACC
* *
42 CGAACCCCTAAACC
1 CGAAACCCGAAACC
56 CGAAACCCGAAATCC
1 CGAAACCCGAAA-CC
*
71 CGAAAACCGAAACC
1 CGAAACCCGAAACC
85 CGGGAAA-CCGAAAACC
1 C--GAAACCCG-AAACC
*
101 CGCAATCCCG-AACC
1 CG-AAACCCGAAACC
115 CGACAAACCCGAAACC
1 CG--AAACCCGAAACC
*
131 CGGAACCCGAAACTC
1 CGAAACCCGAAAC-C
*
146 CGCAACCCGAATACC
1 CGAAACCCGAA-ACC
161 CGAAA--C-AAACC
1 CGAAACCCGAAACC
* *
172 GGGAAACCCGCAACC
1 -CGAAACCCGAAACC
187 CGAAACCCGAAACC
1 CGAAACCCGAAACC
* *
201 CGGAATCCCCGAACCC
1 C-GAA-ACCCGAAACC
217 CG-AACCTCGACTAACC
1 CGAAACC-CGA--AACC
*
233 C-TAACCACGAATTACTCC
1 CGAAACC-CGAA--A--CC
251 CGAAACCCGAAACC
1 CGAAACCCGAAACC
*
265 CGGAACCCGAAACTC
1 CGAAACCCGAAAC-C
* *
280 CGATACCGGAAA-C
1 CGAAACCCGAAACC
* *
293 CGCCAACCCGCGAACC
1 CG-AAACCCG-AAACC
*
309 CGCATACCCGAAACC
1 CG-AAACCCGAAACC
*
324 TCG-AA-CCG-ACCC
1 -CGAAACCCGAAACC
336 CGAAA-CCG-AACC
1 CGAAACCCGAAACC
348 CGAAACCCGAAACC
1 CGAAACCCGAAACC
* *
362 CGAAACCGGACACC
1 CGAAACCCGAAACC
376 CTG-AACCCGAATACC
1 C-GAAACCCGAA-ACC
391 GCGAAACCCGAAATCC
1 -CGAAACCCGAAA-CC
*
407 CGAAACCCGCAACC
1 CGAAACCCGAAACC
*
421 CGCAAACCCGACA-C
1 CG-AAACCCGAAACC
435 CGAAACCCTGAAA-C
1 CGAAACCC-GAAACC
449 CGAAACCCGATAACC
1 CGAAACCCGA-AACC
*
464 CGAAACCCGCAA--
1 CGAAACCCGAAACC
476 CGAAACCCCGGAAACC
1 CGAAA-CCC-GAAACC
492 CGAAACCCGGAAAACC
1 CGAAACCC-G-AAACC
*
508 CG-TA-CCGAAACC
1 CGAAACCCGAAACC
520 CGAATACCCGAAA--
1 CGAA-ACCCGAAACC
533 CG-AACCCGGAAACC
1 CGAAACCC-GAAACC
547 CGAAACCCGAAA-C
1 CGAAACCCGAAACC
560 CGAAACGAACCGAAACC
1 CGAAAC---CCGAAACC
* *
577 CGACACACGAAACC
1 CGAAACCCGAAACC
591 CGAAACCCG-AACC
1 CGAAACCCGAAACC
604 CGAATACCCTGAAACC
1 CGAA-ACCC-GAAACC
620 CGAAACCCGAAACC
1 CGAAACCCGAAACC
634 CGAAACCCGAAACC
1 CGAAACCCGAAACC
*
648 CGAAAACCCGAACCC
1 CG-AAACCCGAAACC
*
663 CGGAAACACGAAAACC
1 C-GAAACCCG-AAACC
*
679 CGCAACCCGAAACC
1 CGAAACCCGAAACC
693 CGAAACCCGAAACC
1 CGAAACCCGAAACC
*
707 TGAAA-CCG-AACC
1 CGAAACCCGAAACC
719 CGAAA-CCG-AACC
1 CGAAACCCGAAACC
*
731 CGGAAACCATTC-AATCCC
1 C-GAAACC---CGAA-ACC
*
749 CGAAACCCGAATCCC
1 CGAAACCCGAA-ACC
764 CGAAACCCGAAACC
1 CGAAACCCGAAACC
*
778 CGAAA-CCTAAACC
1 CGAAACCCGAAACC
791 CGAAAACCCGATAACC
1 CG-AAACCCGA-AACC
807 CGAAACCCGTAAACC
1 CGAAACCCG-AAACC
822 CGAAACCCGATAACC
1 CGAAACCCGA-AACC
*
837 CGAAACCCGACACGC
1 CGAAACCCGAAAC-C
852 CG-AACCCGAAA-C
1 CGAAACCCGAAACC
864 CGAAACCCCG-AACC
1 CGAAA-CCCGAAACC
* *
878 TG-CACCCGAATACC
1 CGAAACCCGAA-ACC
892 CGGAAACCCGAAACC
1 C-GAAACCCGAAACC
907 CGAAAAACCCTGAAACC
1 CG--AAACCC-GAAACC
924 CGATAACCCTGAAGACC
1 CGA-AACCC-GAA-ACC
941 CGAAACCCGAAACC
1 CGAAACCCGAAACC
* *
955 CGGATATCCCGAAA-A
1 C-GA-AACCCGAAACC
970 CGAAATACCCGAAAACCC
1 CG-AA-ACCCG-AAA-CC
988 GCGAAACCCGGAAATCC
1 -CGAAACCC-GAAA-CC
1005 CGAAACCCGAAAAACC
1 CGAAACCCG--AAACC
1021 CGAAACCCGAAACC
1 CGAAACCCGAAACC
1035 CGAAACCCGAAAACC
1 CGAAACCCG-AAACC
1050 CGTAAACCCGAAACC
1 CG-AAACCCGAAACC
1065 CGAAAACCCGAAACATC
1 CG-AAACCCGAAAC--C
* *
1082 CGAATATCCAGAACCTC
1 CGAA-A-CCCGAAAC-C
*
1099 CGGAAACCCGACACCC
1 C-GAAACCCGA-AACC
1115 CGAAACCCGAGAAACC
1 CGAAACCC--GAAACC
1131 CGAAAACCCTGAAAACC
1 CG-AAACCC-G-AAACC
1148 CGGAAACCCGAAACC
1 C-GAAACCCGAAACC
*
1163 CTGAAACCCTAATACC
1 C-GAAACCCGAA-ACC
1179 CGAAACCCG-AA-C
1 CGAAACCCGAAACC
1191 CGAAA-CCGAAACC
1 CGAAACCCGAAACC
1204 CGAATACCCGACAACC
1 CGAA-ACCCGA-AACC
*
1220 CGAAACTCCGCAA-C
1 CGAAAC-CCGAAACC
1234 CGAACACCCGAAACC
1 CGAA-ACCCGAAACC
1249 CGAAACCCGAAACC
1 CGAAACCCGAAACC
**
1263 CGGAAACCAATAAACC
1 C-GAAACC-CGAAACC
*
1279 CGATAACCCTAATACC
1 CGA-AACCCGAA-ACC
1295 CGAATACCCGAAACC
1 CGAA-ACCCGAAACC
* *
1310 CGCAACCAGAAAACC
1 CGAAACCCG-AAACC
1325 CGAAACCCGAAACC
1 CGAAACCCGAAACC
*
1339 CGAAAACCGAAACC
1 CGAAACCCGAAACC
1353 CGAAACCCGAAGAAACC
1 CGAAACCC---GAAACC
1370 CGGAACACCTCGAAACCC
1 C-GAA-ACC-CGAAA-CC
*
1388 CGCAACCCGAAACC
1 CGAAACCCGAAACC
* *
1402 AGAAACCAGGAAACC
1 CGAAACC-CGAAACC
1417 CGAAACCCGAAACC
1 CGAAACCCGAAACC
1431 CGAAACCCTGGAAACCC
1 CGAAACCC--GAAA-CC
1448 CGGAAACCCG-AACC
1 C-GAAACCCGAAACC
1462 CGAACACCCGAAACC
1 CGAA-ACCCGAAACC
*
1477 CGAACCCCGAAACC
1 CGAAACCCGAAACC
*
1491 CGCAACCCGAAACC
1 CGAAACCCGAAACC
1505 CGAAACCCGAAACC
1 CGAAACCCGAAACC
1519 CGAAATCCCGAAACCC
1 CGAAA-CCCGAAA-CC
1535 CGAAACCCGAAACC
1 CGAAACCCGAAACC
1549 CGAAACCCCGAAAACC
1 CGAAA-CCCG-AAACC
1565 CGAAACCCGAAAACTC
1 CGAAACCCG-AAAC-C
* *
1581 CGACACCCAAAACC
1 CGAAACCCGAAACC
*
1595 TCGACA-CCGAAACC
1 -CGAAACCCGAAACC
*
1609 GGAAACCCGGAAA-C
1 CGAAACCC-GAAACC
1623 CGTAAACCCGAAAACC
1 CG-AAACCCG-AAACC
*
1639 CGAAACCCGAAAGC
1 CGAAACCCGAAACC
1653 CGAAACCCGAATACC
1 CGAAACCCGAA-ACC
*
1668 CGAATCCCCGGAAACC
1 CGAA-ACCC-GAAACC
1684 CG-AACCCGGAAACC
1 CGAAACCC-GAAACC
*
1698 CGAAAACCCGCAACC
1 CG-AAACCCGAAACC
1713 CGAAACCCGAAAACC
1 CGAAACCCG-AAACC
1728 CGCAAAACCCGAAACC
1 CG--AAACCCGAAACC
1744 CGTAAACCCGAAACC
1 CG-AAACCCGAAACC
1759 CGAAACCCGAAAACC
1 CGAAACCCG-AAACC
*
1774 CGAAAACCCGAAAAC
1 CG-AAACCCGAAACC
1789 CGAATACCCTGAAAACC
1 CGAA-ACCC-G-AAACC
*
1806 CGAACCTCCGAATACC
1 CGAAAC-CCGAA-ACC
1822 TTCGAAAACTCCGGAAACCC
1 --CG-AAAC-CC-GAAA-CC
*
1842 CTAATACCCGAAAACC
1 CGAA-ACCCG-AAACC
1858 CGAAACCCGTAAACCC
1 CGAAACCCG-AAA-CC
1874 CGGAAAACCCGAAACC
1 C-G-AAACCCGAAACC
1890 CGAAACCCGAAATACC
1 CGAAACCCG-AA-ACC
1906 CGAAACCCCGAAACC
1 CGAAA-CCCGAAACC
1921 CGAAA--CGAAACC
1 CGAAACCCGAAACC
*
1933 CGAAACCAGAAACC
1 CGAAACCCGAAACC
* *
1947 CGCAACCCGCATACC
1 CGAAACCCG-AAACC
* *
1962 CGAAACCCGCACCC
1 CGAAACCCGAAACC
1976 CGAATA--CGAAACC
1 CGAA-ACCCGAAACC
1989 CGAAACCCGAAACC
1 CGAAACCCGAAACC
**
2003 CGCATCCCCGAAACC
1 CG-AAACCCGAAACC
* *
2018 CGAAACGCTATAACC
1 CGAAACCCGA-AACC
*
2033 CTAAACCCGAAAACC
1 CGAAACCCG-AAACC
*
2048 CTAAACCCTGTAGAAACC
1 CGAAACCC----GAAACC
*
2066 CGACACCCGAAAACC
1 CGAAACCCG-AAACC
2081 CGAAACCCG-AACC
1 CGAAACCCGAAACC
*
2094 CGAAACGCCTTAAACC
1 CGAAAC-CC-GAAACC
*
2110 TCGAAACCTGAAACC
1 -CGAAACCCGAAACC
2125 CTGAAACCCGAAACC
1 C-GAAACCCGAAACC
2140 CGAAACCCGAGAACC
1 CGAAACCCGA-AACC
*
2155 CGACACCCGAATACC
1 CGAAACCCGAA-ACC
*
2170 CGAAACCCGACAA-A
1 CGAAACCCGA-AACC
2184 C-AAACCCGGAAACCC
1 CGAAACCC-GAAA-CC
2199 CGAAACTCCGTAAACC
1 CGAAAC-CCG-AAACC
*
2215 CGTAAA---AAAACCTC
1 CG-AAACCCGAAA-C-C
2229 CGAATACCCCG-AA-C
1 CGAA-A-CCCGAAACC
*
2243 CGTAACCCCGAAACC
1 CG-AAACCCGAAACC
2258 CGGAATACCCGGAAACC
1 C-GAA-ACCC-GAAACC
2275 CGGGAAACCCGTAAATACC
1 C--GAAACCCG--AA-ACC
*
2294 C-CAACCCGAAACC
1 CGAAACCCGAAACC
2307 CGAAACCCGAAACC
1 CGAAACCCGAAACC
2321 CTTG-AA-CCGTAAACC
1 C--GAAACCCG-AAACC
2336 CTGAAACCCGAAATCC
1 C-GAAACCCGAAA-CC
*
2352 CGACACCTCGAAACC
1 CGAAACC-CGAAACC
2367 CGAAACCCGAAACC
1 CGAAACCCGAAACC
2381 CGTGAAACCCGAAACCC
1 C--GAAACCCGAAA-CC
*
2398 CGACACCCGAAAACC
1 CGAAACCCG-AAACC
2413 CGAAACCCGAAGA-C
1 CGAAACCCGAA-ACC
2427 CGAAACCCGGGAAACC
1 CGAAACCC--GAAACC
* *
2443 CTTGAACCCCGAACCC
1 C--GAAACCCGAAACC
*
2459 CGACACCCGAAACC
1 CGAAACCCGAAACC
2473 CGGAAAACCCG-AACC
1 C-G-AAACCCGAAACC
2488 CG-AACCCGAATATCC
1 CGAAACCCGAA-A-CC
2503 CGACAACCCTGAAATCC
1 CGA-AACCC-GAAA-CC
2520 CGAAACCCGAAACC
1 CGAAACCCGAAACC
2534 CGAAAACCCGATGAAACC
1 CG-AAACCC---GAAACC
*
2552 TCGAACCCCGAAAGACC
1 -CGAAACCCG-AA-ACC
*
2569 CG-AACCCTGAATCC
1 CGAAACCC-GAAACC
*
2583 CGTAACCCCGATAA-C
1 CG-AAACCCGA-AACC
2598 CGAAACCCGATAATCC
1 CGAAACCCGA-AA-CC
* *
2614 GGAAACCCGAAACT
1 CGAAACCCGAAACC
2628 CGAAAAAAGCCCGAAACTC
1 CG---AAA-CCCGAAAC-C
*
2647 CTGGAACCCGAAACC
1 C-GAAACCCGAAACC
2662 CG-AACCCGAAACC
1 CGAAACCCGAAACC
2675 TCGAAACCTCG-AACC
1 -CGAAACC-CGAAACC
*
2690 AGAAAACCCGAAACC
1 CG-AAACCCGAAACC
2705 CGAAACCCGGACAACC
1 CGAAACCC-GA-AACC
2721 CGAATACCCGAAACC
1 CGAA-ACCCGAAACC
*
2736 CGATACCCGAAACC
1 CGAAACCCGAAACC
2750 CG-AA-CCGAAACC
1 CGAAACCCGAAACC
*
2762 CGCAA-CCGAAACC
1 CGAAACCCGAAACC
* *
2775 CGGAAACCCGCAGCC
1 C-GAAACCCGAAACC
*
2790 CGAAACCCGCAACC
1 CGAAACCCGAAACC
*
2804 CGAATCCCGAAACC
1 CGAAACCCGAAACC
2818 CTGAAACCCGTGAAACC
1 C-GAAACCC--GAAACC
2835 CGATAA-CC-AAACC
1 CGA-AACCCGAAACC
2848 CGAAAACCCGAAACC
1 CG-AAACCCGAAACC
**
2863 CGGCCACCCGGAAA-C
1 C-GAAACCC-GAAACC
2878 CG-AA-CCGAAACC
1 CGAAACCCGAAACC
2890 CTTGAAACCCGAAACC
1 C--GAAACCCGAAACC
2906 CTGAATAACCCCGAAACC
1 C-G-A-AA-CCCGAAACC
2924 CGAAACCCGAAACC
1 CGAAACCCGAAACC
* *
2938 CGTAACCCGAACAACT
1 CGAAACCCG-A-AACC
2954 CGAAACTCCGAAACCC
1 CGAAAC-CCGAAA-CC
*
2970 GCGAACCCCGAAACC
1 -CGAAACCCGAAACC
2985 CGAAACCCGAAAACC
1 CGAAACCCG-AAACC
3000 CG-AACCCGAAACCC
1 CGAAACCCGAAA-CC
3014 CGAAACTCCGAACACC
1 CGAAAC-CCGAA-ACC
*
3030 CGGAAACCCGCAACC
1 C-GAAACCCGAAACC
3045 CGAAA-CCGAAACC
1 CGAAACCCGAAACC
3058 TCGAAACCCGAAACC
1 -CGAAACCCGAAACC
3073 CGAAACCCGAAACC
1 CGAAACCCGAAACC
3087 CGAAACCCGAAACC
1 CGAAACCCGAAACC
3101 CGAAACCCGAAACCC
1 CGAAACCCGAAA-CC
3116 CGGAAACCCGGACAAACCC
1 C-GAAACCC-G--AAA-CC
* *
3135 CGGAAAACCGACACC
1 C-GAAACCCGAAACC
3150 CTGAAAACCCGAAACC
1 C-G-AAACCCGAAACC
*
3166 CGAAACCTGAAAACC
1 CGAAACCCG-AAACC
* *
3181 CGGAAACCCGCACCC
1 C-GAAACCCGAAACC
*
3196 CGAAAAACCCGACACC
1 CG--AAACCCGAAACC
*
3212 CGAAA-CCGCAACC
1 CGAAACCCGAAACC
*
3225 CGCCATACCCGAAACC
1 CG--AAACCCGAAACC
3241 CTGGAAACTCCCGAAACC
1 C--GAAA--CCCGAAACC
3259 CGAAACCCGAAAACC
1 CGAAACCCG-AAACC
3274 CGAAACCCGAAACC
1 CGAAACCCGAAACC
3288 CGATAACCCGAAA-C
1 CGA-AACCCGAAACC
3302 CGTAAACCCGAAAACC
1 CG-AAACCCG-AAACC
*
3318 CTAAACCCGAAACTGC
1 CGAAACCCGAAAC--C
3334 GCGAAACCCGAAACC
1 -CGAAACCCGAAACC
3349 CGAAGCACCCGAAACC
1 CGAA--ACCCGAAACC
3365 CGAAACCCGAAACC
1 CGAAACCCGAAACC
3379 CGAAACCCGGGAAA-C
1 CGAAACCC--GAAACC
*
3394 CGAAACCCGCAACC
1 CGAAACCCGAAACC
3408 CGCTAATATCCCGAAACC
1 CG--AA-A-CCCGAAACC
3426 CGATACACCCGAAACC
1 CGA-A-ACCCGAAACC
3442 CG-AACCTCGAAACC
1 CGAAACC-CGAAACC
3456 CGAAAAAACCCGAAACCC
1 CG---AAACCCGAAA-CC
3474 CGACAACCCGGAAAACC
1 CGA-AACCC-G-AAACC
3491 TCGAAATACCCCGAAACC
1 -CG-AA-A-CCCGAAACC
3509 CGAAA-CCG-AACC
1 CGAAACCCGAAACC
*
3521 CGGAACACCC-ATAAAC
1 C-GAA-ACCCGA-AACC
*
3537 CGTAAAACCCGAACCC
1 CG--AAACCCGAAACC
3553 CGAAACCCGAAACC
1 CGAAACCCGAAACC
*
3567 CG-AACCCTCAAA-C
1 CGAAACCC-GAAACC
3580 CGAAACCCGAAA-C
1 CGAAACCCGAAACC
3593 CGATAATCCCG-AACC
1 CGA-AA-CCCGAAACC
*
3608 CGGAAACCCGGAATCCC
1 C-GAAACCC-GAA-ACC
*
3625 CTAAA-CCGAAACC
1 CGAAACCCGAAACC
*
3638 AGAAATCCCGAAACC
1 CGAAA-CCCGAAACC
*
3653 CGAAAACCCGCAA--
1 CG-AAACCCGAAACC
3666 CGAAGACTCCGAAA-C
1 CGAA-AC-CCGAAACC
*
3681 CGCAACCCGAAACC
1 CGAAACCCGAAACC
3695 CGAAACCCG-AACC
1 CGAAACCCGAAACC
3708 CGAAAACCCGAAACC
1 CG-AAACCCGAAACC
3723 CGAAACCCGAAACC
1 CGAAACCCGAAACC
3737 CGAAACCCCCGAAACC
1 CGAAA--CCCGAAACC
3753 C-AAACCCGAAACC
1 CGAAACCCGAAACC
*
3766 AGAAACCCCTGAAACC
1 CGAAA-CCC-GAAACC
3782 CGAAACCCGAAA--
1 CGAAACCCGAAACC
3794 CGAAACCCGAAACC
1 CGAAACCCGAAACC
**
3808 CTCAACCCGAATACC
1 CGAAACCCGAA-ACC
3823 CGAAACCCCGAAAACC
1 CGAAA-CCCG-AAACC
*
3839 CG-CACTCCGGAAACC
1 CGAAAC-CC-GAAACC
3854 GCGAAACCCGAAACC
1 -CGAAACCCGAAACC
3869 CGAAACCCGAAACC
1 CGAAACCCGAAACC
3883 CGAAACCCGAAAACC
1 CGAAACCCG-AAACC
3898 CGAAACCCGAAA-C
1 CGAAACCCGAAACC
3911 CGAAATCCCGAAACTC
1 CGAAA-CCCGAAAC-C
*
3927 CGAAACTCCGCAACC
1 CGAAAC-CCGAAACC
3942 CGAAACCCGAAACC
1 CGAAACCCGAAACC
*
3956 CGAAA-CCTAAA-C
1 CGAAACCCGAAACC
3968 CGAATACCCGAAACC
1 CGAA-ACCCGAAACC
*
3983 CG-AA-CCTAAACC
1 CGAAACCCGAAACC
3995 CGAAAACCCGAAA--
1 CG-AAACCCGAAACC
4008 CGAAACCCTGAAAACC
1 CGAAACCC-G-AAACC
4024 CGAAACCCCGAAATCC
1 CGAAA-CCCGAAA-CC
* *
4040 GGAAAACCCG-CACC
1 CG-AAACCCGAAACC
4054 CGAAACCCGAAACC
1 CGAAACCCGAAACC
*
4068 CGAAA-CCTAAACC
1 CGAAACCCGAAACC
4081 CGAAACCCGAAACC
1 CGAAACCCGAAACC
*
4095 CGAAAACCCGATACTC
1 CG-AAACCCGAAAC-C
*
4111 CGAAACCCGACACC
1 CGAAACCCGAAACC
4125 CGAAGACCCGAAA-C
1 CGAA-ACCCGAAACC
4139 CGAAACCCGAAACC
1 CGAAACCCGAAACC
4153 CGTAAACCCCGATAAACC
1 CG-AAA-CCCG--AAACC
4171 CTGAAACCCGAAACC
1 C-GAAACCCGAAACC
4186 CGAAACCCGAAA-C
1 CGAAACCCGAAACC
4199 CGAAAACCCGAAAGCC
1 CG-AAACCCGAAA-CC
*
4215 CTAATA-CCGAAACC
1 CGAA-ACCCGAAACC
4229 CGAAACCCGAAACC
1 CGAAACCCGAAACC
4243 CGGAAACCCGAAAACC
1 C-GAAACCCG-AAACC
*
4259 C-TAACCCGAAACC
1 CGAAACCCGAAACC
* *
4272 CGAAA-CC-TAACT
1 CGAAACCCGAAACC
*
4284 CGAAACTTCCGACACC
1 CGAAAC--CCGAAACC
*
4300 CG-AACACCTAAACC
1 CGAAAC-CCGAAACC
*
4314 CGCACACCCGAAAACC
1 CG-AAACCCG-AAACC
4330 CGAAACCCGAAACC
1 CGAAACCCGAAACC
* *
4344 CTAACACCCGAACCC
1 CGAA-ACCCGAAACC
*
4359 CGCTAAACCCGAACTCTC
1 CG--AAACCCGAA-AC-C
4377 CGACAACCCGAAACC
1 CGA-AACCCGAAACC
*
4392 CG-AA-CCGAACCC
1 CGAAACCCGAAACC
*
4404 CGCAAACCCGGACACC
1 CG-AAACCC-GAAACC
*
4420 AGAAA-CCG-AACC
1 CGAAACCCGAAACC
4432 CGAAACCCG-AACC
1 CGAAACCCGAAACC
*
4445 CTAAACCCGAAAACC
1 CGAAACCCG-AAACC
*
4460 CGGACACCCGAAATACC
1 C-GAAACCCG-AA-ACC
4477 CGAATATCCCGAAACC
1 CGAA-A-CCCGAAACC
*
4493 CGAACCCCGAAAACC
1 CGAAACCCG-AAACC
* *
4508 GGAAACCCGACACC
1 CGAAACCCGAAACC
* *
4522 CGACACCCTGAACCCC
1 CGAAACCC-GAA-ACC
*
4538 CGAAACCCGACACC
1 CGAAACCCGAAACC
4552 CGAAACCCGAAA-C
1 CGAAACCCGAAACC
*
4565 CGACACCCGAAAACC
1 CGAAACCCG-AAACC
*
4580 CGAAA-CCGACACAC
1 CGAAACCCGAAAC-C
*
4594 TGAAACCCTCGGAAACC
1 CGAAA-CC-C-GAAACC
*
4611 CGAAACACGAATACCC
1 CGAAACCCGAA-A-CC
* *
4627 CGTATAACCTGATACC
1 CG-A-AACCCGAAACC
*
4643 CGAAACCCG-ACCC
1 CGAAACCCGAAACC
4656 CGAAACCCGAAACC
1 CGAAACCCGAAACC
4670 CG-AACCCGAAACC
1 CGAAACCCGAAACC
*
4683 CGAACCCCGTAAACC
1 CGAAACCCG-AAACC
*
4698 CGACA-CCGAAA-C
1 CGAAACCCGAAACC
4710 C-AAACCCCGAAACC
1 CGAAA-CCCGAAACC
4724 CGAAACCCGAAAACC
1 CGAAACCCG-AAACC
*
4739 CGAACCCCGAAACC
1 CGAAACCCGAAACC
*
4753 CGAACCCCGAATAACCC
1 CGAAACCCG-A-AA-CC
4770 CG-AA-CCGAAACC
1 CGAAACCCGAAACC
*
4782 CGGGAACCCCGAAAACC
1 C--GAAACCCG-AAACC
4799 CGAAACCCGTAAACC
1 CGAAACCCG-AAACC
*
4814 CTAAAAACCCTGAAACC
1 C--GAAACCC-GAAACC
*
4831 CGAATCCCAGAAACC
1 CGAAACCC-GAAACC
*
4846 CAAAACCCGAAACC
1 CGAAACCCGAAACC
4860 CGATAAACCCGAAACC
1 CG--AAACCCGAAACC
4876 CGAAAACCCGAAACC
1 CG-AAACCCGAAACC
4891 CGAAACCCGAAACC
1 CGAAACCCGAAACC
4905 CGAAAACCCCGAAACC
1 CG-AAA-CCCGAAACC
4921 CG-AACCCGGTAAACC
1 CGAAACCC-G-AAACC
4936 CGAAACCCGAAACC
1 CGAAACCCGAAACC
*
4950 CGAAACCCGCATATCC
1 CGAAACCCG-A-AACC
4966 CGAAACCCGAAACCC
1 CGAAACCCGAAA-CC
4981 CG-AACCCGGAAACC
1 CGAAACCC-GAAACC
4995 CGAAACCCGGAAA-C
1 CGAAACCC-GAAACC
5009 CGAATACCCGAAACC
1 CGAA-ACCCGAAACC
*
5024 CGACACCCGAAAACAC
1 CGAAACCCG-AAAC-C
*
5040 TGAAACCCGAAACC
1 CGAAACCCGAAACC
*
5054 CGAAACCCGCAACC
1 CGAAACCCGAAACC
*
5068 CGGAAACCCTAAACC
1 C-GAAACCCGAAACC
5083 CG-AACCCGAAACC
1 CGAAACCCGAAACC
*
5096 CGACACCCGAACACC
1 CGAAACCCGAA-ACC
5111 CGAAACCCGAAACTCC
1 CGAAACCCGAAA--CC
5127 CGAAACCCGAAA-C
1 CGAAACCCGAAACC
* **
5140 CGGAACCCGGTCTCACC
1 CGAAACCC-G--AAACC
5157 CGAAAATCCCGAAA-C
1 CG-AAA-CCCGAAACC
*
5172 CGAAACCCG-AACTT
1 CGAAACCCGAAAC-C
*
5186 CGAAATACCCGACACC
1 CG-AA-ACCCGAAACC
5202 CGAAACCCGAAACCC
1 CGAAACCCGAAA-CC
5217 CGAAAACCCGAAACC
1 CG-AAACCCGAAACC
* *
5232 CGAAATCCGACACC
1 CGAAACCCGAAACC
*
5246 CGAAACCCTGAACCC
1 CGAAACCC-GAAACC
5261 CGAAACCCGGAAATCC
1 CGAAACCC-GAAA-CC
*
5277 CGGAAACCC-CAACC
1 C-GAAACCCGAAACC
5291 CGAAATACCCGAAACC
1 CG-AA-ACCCGAAACC
5307 CGAAACCCTGAAACC
1 CGAAACCC-GAAACC
*
5322 CGAAACCCCAAAACCC
1 CGAAA-CCCGAAA-CC
*
5338 CGACACCCGAAACC
1 CGAAACCCGAAACC
5352 CGAAAACCCG-AACC
1 CG-AAACCCGAAACC
5366 CGAAACTCCGAAACC
1 CGAAAC-CCGAAACC
5381 CG-AACCCGAAA-C
1 CGAAACCCGAAACC
5393 CGAAACCCGAAACC
1 CGAAACCCGAAACC
5407 CGAAA-CCGAAACC
1 CGAAACCCGAAACC
*
5420 CGGAACCCGAAACC
1 CGAAACCCGAAACC
5434 CGAAACCGCG-AACC
1 CGAAACC-CGAAACC
5448 CTGTAAACCCGAAACC
1 C-G-AAACCCGAAACC
5464 CG-AA-CCGAAACC
1 CGAAACCCGAAACC
5476 CGAAACCCGATAACCTC
1 CGAAACCCGA-AA-C-C
5493 GCAGAAACCCTG-AACC
1 -C-GAAACCC-GAAACC
* *
5509 CGGCAA-CCGACA-C
1 C-GAAACCCGAAACC
**
5522 CGAAACCAAAAACC
1 CGAAACCCGAAACC
5536 CGGAAACCCGAAACC
1 C-GAAACCCGAAACC
5551 CGAAACCCGAAATCC
1 CGAAACCCGAAA-CC
*
5566 CGAAAACCAGATAAAACC
1 CG-AAACCCG---AAACC
5584 CGAAACCCG-AACC
1 CGAAACCCGAAACC
*
5597 CGAAATACCCGGAACC
1 CG-AA-ACCCGAAACC
*
5613 CTAAACCCGCAAACTC
1 CGAAACCCG-AAAC-C
*
5629 CGAAACCCGCAACC
1 CGAAACCCGAAACC
5643 CGAAACCCGAAACC
1 CGAAACCCGAAACC
5657 TCGAAACCCGAAACC
1 -CGAAACCCGAAACC
5672 CTGAAACCCGGAAATCC
1 C-GAAACCC-GAAA-CC
* *
5689 CGAAAACCGACACC
1 CGAAACCCGAAACC
5703 CGAACACCCGAAACC
1 CGAA-ACCCGAAACC
5718 CGAAACCCGAAACC
1 CGAAACCCGAAACC
5732 CGAAACCCG-AA-C
1 CGAAACCCGAAACC
*
5744 CTAAACCCGGAAA-C
1 CGAAACCC-GAAACC
5758 CGTAAACCCGAAACC
1 CG-AAACCCGAAACC
*
5773 CGAAACCCG-CACC
1 CGAAACCCGAAACC
5786 C-AAACCCGAAACC
1 CGAAACCCGAAACC
5799 CGAAACCTCCGAAACC
1 CGAAA-C-CCGAAACC
*
5815 C-AAACCCGTAACC
1 CGAAACCCGAAACC
5828 CGATAAACCCGAAACC
1 CG--AAACCCGAAACC
5844 CTGAAACCCGGTAAACTC
1 C-GAAACCC-G-AAAC-C
*
5862 CG-AACCCGAATAAAC
1 CGAAACCCG-A-AACC
5877 C-AAACCCGAAACC
1 CGAAACCCGAAACC
5890 CGAAACCCTG-AACC
1 CGAAACCC-GAAACC
*
5904 CGGAAACTCGAAAACC
1 C-GAAACCCG-AAACC
5920 CGAAACCGCGAAACC
1 CGAAACC-CGAAACC
5935 CTGTAATAAACCCGAAACC
1 C-G----AAACCCGAAACC
5954 CGAAA-CCGAAA-C
1 CGAAACCCGAAACC
* *
5966 CGAGACACGAAAACTC
1 CGAAACCCG-AAAC-C
5982 CGAAAACCCGAAAAACC
1 CG-AAACCCG--AAACC
5999 CGAAACCCG-AACC
1 CGAAACCCGAAACC
6012 CGAAAACCCGAAACC
1 CG-AAACCCGAAACC
6027 CGAAATCCCGAAACC
1 CGAAA-CCCGAAACC
6042 CGAAACCCGAAA-C
1 CGAAACCCGAAACC
*
6055 CGCAACCCGAAATCCC
1 CGAAACCCGAAA--CC
*
6071 CGAAACCCTATAACC
1 CGAAACCCGA-AACC
6086 CGAAACCCG--ACC
1 CGAAACCCGAAACC
6098 TCGAAACCCGAAACC
1 -CGAAACCCGAAACC
6113 CGATAACCCGAAAAACC
1 CGA-AACCCG--AAACC
6130 CGAAACCCGAAACTC
1 CGAAACCCGAAAC-C
*
6145 CGAAACCTCTAAACC
1 CGAAACC-CGAAACC
*
6160 CGAAACCCGCAACC
1 CGAAACCCGAAACC
*
6174 CG-AACTCCGGAATCCC
1 CGAAAC-CC-GAA-ACC
*
6190 CGAAAACCCTAAACC
1 CG-AAACCCGAAACC
*
6205 CGAAA--CGCAACC
1 CGAAACCCGAAACC
6217 CG-AACCCGAAACC
1 CGAAACCCGAAACC
6230 CG-AA-CCGTAAAAATCC
1 CGAAACCCG---AAA-CC
** *
6246 CTCAACCCGCAACC
1 CGAAACCCGAAACC
6260 CTGGAAACCCGAAACC
1 C--GAAACCCGAAACC
*
6276 C-AAACCCGTAAAAC
1 CGAAACCCG-AAACC
*
6290 CG-CACCCGTAAAACC
1 CGAAACCCG--AAACC
*
6305 CGCAA-CCGAAACC
1 CGAAACCCGAAACC
* *
6318 CGCATCCCG-AACC
1 CGAAACCCGAAACC
*
6331 ACGACA-CCGAAACC
1 -CGAAACCCGAAACC
6345 CGAAACCCG-AACC
1 CGAAACCCGAAACC
*
6358 CTG-ACCCCGAATA-C
1 C-GAAACCCGAA-ACC
6372 CGAAATCTCCGTAGAAACC
1 CGAAA-C-CC---GAAACC
6391 CGATAACCCGAAACC
1 CGA-AACCCGAAACC
*
6406 CGAAACCCGAACCC
1 CGAAACCCGAAACC
*
6420 CGCAACCCGGAAACC
1 CGAAACCC-GAAACC
*
6435 CGCAACCCGAGAAACC
1 CGAAACCC--GAAACC
*
6451 CGAAACCCGAGAAAAC
1 CGAAACCC--GAAACC
*
6467 CGAAAACCGAAACC
1 CGAAACCCGAAACC
6481 CGAAACCCGAAA-C
1 CGAAACCCGAAACC
*
6494 CGAAGAAACCGAAACC
1 CG-A-AACCCGAAACC
6510 CGAAACCCGCAAACCTC
1 CGAAACCCG-AAA-C-C
6527 CG-AACCCGAAAACC
1 CGAAACCCG-AAACC
*
6541 CGAAACCAGAAA-C
1 CGAAACCCGAAACC
6554 CGAAACTCC--AACC
1 CGAAAC-CCGAAACC
6567 CGGGAAACCCTGAAACACC
1 C--GAAACCC-G-AA-ACC
*
6586 CGAAA-CCGACACC
1 CGAAACCCGAAACC
6599 CGAAACCCGAAACCC
1 CGAAACCCGAAA-CC
*
6614 CTAAACCCGAAACC
1 CGAAACCCGAAACC
6628 CGAAAACTCCGAAACC
1 CG-AAAC-CCGAAACC
6644 CGAAA-CCG--ACC
1 CGAAACCCGAAACC
*
6655 TGAAACCCGCGAAACC
1 CGAAA-CC-CGAAACC
6671 CGAAACCCGAAACC
1 CGAAACCCGAAACC
6685 CGAAA-CCGAATACC
1 CGAAACCCGAA-ACC
6699 CGAAACCCGAAACC
1 CGAAACCCGAAACC
* *
6713 CGCAA-CCGCAACC
1 CGAAACCCGAAACC
6726 CGGAAACCCGAAACC
1 C-GAAACCCGAAACC
6741 C-AAACCCGAAACC
1 CGAAACCCGAAACC
*
6754 CTAAACCCGAAACC
1 CGAAACCCGAAACC
*
6768 CGAAACCCGAAAAC
1 CGAAACCCGAAACC
6782 CGAAA-CCGAAAAACC
1 CGAAACCCG--AAACC
6797 CGAAACCC-ATAACC
1 CGAAACCCGA-AACC
6811 CGAAACCCTGAAACC
1 CGAAACCC-GAAACC
*
6826 CGAAA-CGGAAACC
1 CGAAACCCGAAACC
*
6839 TCGAAACCCGGAAATC
1 -CGAAACCC-GAAACC
6855 CGAAAACCCGAAACC
1 CG-AAACCCGAAACC
6870 CGAAACCCGAAACC
1 CGAAACCCGAAACC
* *
6884 CGAAACCTGGACACC
1 CGAAACC-CGAAACC
6899 CGAGAAACCCGAAACC
1 C--GAAACCCGAAACC
*
6915 GCGCAAGCCCGTAAACC
1 -CG-AAACCCG-AAACC
6932 CGAAACCCGAAACC
1 CGAAACCCGAAACC
6946 CGGAAACCCGAATAAACC
1 C-GAAACCCG---AAACC
*
6964 CGATCTACCCGTAAACC
1 CGA--AACCCG-AAACC
* * *
6981 CTAAACCCGCACCC
1 CGAAACCCGAAACC
*
6995 CGAAACCCTAAACC
1 CGAAACCCGAAACC
7009 CGAAACCCGAAA-C
1 CGAAACCCGAAACC
7022 CGAAACCCGAAACAC
1 CGAAACCCGAAAC-C
* *
7037 GGAAACCCGAATAATC
1 CGAAACCCG-A-AACC
7053 CGAAACCTCGAAACC
1 CGAAACC-CGAAACC
7068 CGAAACCCCGAAACC
1 CGAAA-CCCGAAACC
7083 CGAAACCCGAAAACC
1 CGAAACCCG-AAACC
7098 CGTTGAAACCCGAAACC
1 C---GAAACCCGAAACC
*
7115 CGATAACCCCCAAACC
1 CGA-AA-CCCGAAACC
*
7131 CGGTTTAAATCCCGCAACC
1 C-G---AAA-CCCGAAACC
7150 CGAAACCC-AAACC
1 CGAAACCCGAAACC
*
7163 CGGAACCCTGAAACC
1 CGAAACCC-GAAACC
*
7178 CGAAACCCGCAA-C
1 CGAAACCCGAAACC
*
7191 CGAAA-CTG-AACC
1 CGAAACCCGAAACC
* *
7203 CGAAACCTGATACCC
1 CGAAACCCGA-AACC
7218 CGAAACCCGAGAAACC
1 CGAAACCC--GAAACC
7234 CGAAACCCGATAACC
1 CGAAACCCGA-AACC
*
7249 CGACACCCGAAACC
1 CGAAACCCGAAACC
* * *
7263 CGCAACTACGAATCC
1 CGAAAC-CCGAAACC
7278 CGAAATCCCGAAAACC
1 CGAAA-CCCG-AAACC
*
7294 CGGAAA-CAGAAA-C
1 C-GAAACCCGAAACC
7307 CG-AACCCGAAACC
1 CGAAACCCGAAACC
7320 CGAAACCCGAAAACC
1 CGAAACCCG-AAACC
7335 GCG-AACCCGAAACCC
1 -CGAAACCCGAAA-CC
7350 CGAAACCC--AACC
1 CGAAACCCGAAACC
*
7362 CTTAAACCCGAAACC
1 C-GAAACCCGAAACC
7377 CGAAACCCGACAACC
1 CGAAACCCGA-AACC
7392 CGAAACCCGAAAACACC
1 CGAAACCCG--AA-ACC
*
7409 CGAAACCCTACAACC
1 CGAAACCCGA-AACC
7424 CGAAACCCG-AACC
1 CGAAACCCGAAACC
7437 CG-AACCCTGGGAAACC
1 CGAAACCC---GAAACC
*
7453 CGAAACCCGAATCCC
1 CGAAACCCGAA-ACC
*
7468 CGCAAACCCTGACACC
1 CG-AAACCC-GAAACC
*
7484 CTAAACCACGAAA-C
1 CGAAACC-CGAAACC
*
7498 CTAAACCCGCAAACC
1 CGAAACCCG-AAACC
7513 CGAAACCCGAAACC
1 CGAAACCCGAAACC
7527 CTGAAACCCGAAACC
1 C-GAAACCCGAAACC
*
7542 CGACAACCCTAAACC
1 CGA-AACCCGAAACC
*
7557 CTAAA-CCGAAACC
1 CGAAACCCGAAACC
*
7570 CTAAATCCCG-AACC
1 CGAAA-CCCGAAACC
*
7584 CGAAACCCTAAACC
1 CGAAACCCGAAACC
*
7598 CGAAACCCGAACCC
1 CGAAACCCGAAACC
* *
7612 CGAAAACCTAAACC
1 CGAAACCCGAAACC
*
7626 CGTAAACCCTAAACC
1 CG-AAACCCGAAACC
* *
7641 CTAAAACCCTTAAACC
1 C-GAAACCC-GAAACC
* *
7657 CTAAACCCTTAAACC
1 CGAAACCC-GAAACC
*
7672 TC--AACCCTAAACC
1 -CGAAACCCGAAACC
* **
7685 CTAAACCATAAACC
1 CGAAACCCGAAACC
* *
7699 CTAAACCCTAAACC
1 CGAAACCCGAAACC
* * *
7713 CTAAAACCCTCACACC
1 C-GAAACCC-GAAACC
* *
7729 CGAAACCCTAAACA
1 CGAAACCCGAAACC
* *
7743 CTAAA-CCTAAACC
1 CGAAACCCGAAACC
* * *
7756 CTAAACCCTAAA-A
1 CGAAACCCGAAACC
* *
7769 CGCTAACCCTAAACC
1 CG-AAACCCGAAACC
* *
7784 CTAAACCCTAAA-C
1 CGAAACCCGAAACC
* *
7797 CTAAACCCTAAA-C
1 CGAAACCCGAAACC
* *
7810 C-TAACCCTAAA-C
1 CGAAACCCGAAACC
*
7822 CGAAACCCTAAACC
1 CGAAACCCGAAACC
7836 TAACCTAACC
Statistics
Matches: 6466, Mismatches: 556, Indels: 1575
0.75 0.06 0.18
Matches are distributed among these distances:
11 31 0.00
12 261 0.04
13 698 0.11
14 1785 0.28
15 1831 0.28
16 1126 0.17
17 412 0.06
18 213 0.03
19 90 0.01
20 19 0.00
ACGTcount: A:0.40, C:0.41, G:0.14, T:0.05
Consensus pattern (14 bp):
CGAAACCCGAAACC
Found at i:265 original size:85 final size:84
Alignment explanation
Indices: 174--368 Score: 206
Period size: 85 Copynumber: 2.3 Consensus size: 84
164 AACAAACCGG
* * *
174 GAAACCCGCAACCCGAAACCCGAAACCCGGAATCC-CCGAACCC-CGAACCTCG-ACTAACCC-T
1 GAAACCCGAAACCCGAAACCCGAAACCCGGAAACCGCC-AACCCGCGAACC-CGCA-T-ACCCGA
**
235 AACCACGAA-TTACTCCCGAAACCC
62 AACCACGAACCGAC-CCCGAAA-CC
* *
259 GAAACCCGGAACCCGAAACTCCGATA-CCGGAAACCGCCAACCCGCGAACCCGCATACCCGAAAC
1 GAAACCCGAAACCCGAAAC-CCGAAACCCGGAAACCGCCAACCCGCGAACCCGCATACCCGAAAC
*
323 CTCGAACCGACCCCGAAACC
65 CACGAACCGACCCCGAAACC
343 G-AACCCGAAACCCGAAACCCGAAACC
1 GAAACCCGAAACCCGAAACCCGAAACC
369 GGACACCCTG
Statistics
Matches: 94, Mismatches: 9, Indels: 16
0.79 0.08 0.13
Matches are distributed among these distances:
82 5 0.05
83 17 0.18
84 7 0.07
85 49 0.52
86 16 0.17
ACGTcount: A:0.35, C:0.44, G:0.15, T:0.06
Consensus pattern (84 bp):
GAAACCCGAAACCCGAAACCCGAAACCCGGAAACCGCCAACCCGCGAACCCGCATACCCGAAACC
ACGAACCGACCCCGAAACC
Found at i:1197 original size:6 final size:7
Alignment explanation
Indices: 12--7835 Score: 5715
Period size: 7 Copynumber: 1058.0 Consensus size: 7
2 AAACCGAACA
*
12 CGAACCC
1 CGAAACC
19 CGAAACCC
1 CGAAA-CC
27 CGAAACC
1 CGAAACC
34 CGAAAACC
1 CG-AAACC
*
42 CGAACCC
1 CGAAACC
*
49 CTAAACC
1 CGAAACC
56 CGAAACC
1 CGAAACC
63 CGAAATCC
1 CGAAA-CC
*
71 CGAAAAC
1 CGAAACC
78 CGAAACC
1 CGAAACC
85 CGGGAAA-C
1 C--GAAACC
93 CGAAAACC
1 CG-AAACC
*
101 CGCAATCC
1 CG-AAACC
109 CG-AACC
1 CGAAACC
115 CGACAAACC
1 CG--AAACC
124 CGAAACC
1 CGAAACC
*
131 CGGAACC
1 CGAAACC
138 CGAAACTC
1 CGAAAC-C
*
146 CGCAACC
1 CGAAACC
153 CGAATACC
1 CGAA-ACC
161 CGAAA--
1 CGAAACC
166 C-AAACC
1 CGAAACC
*
172 GGGAAACC
1 -CGAAACC
*
180 CGCAACC
1 CGAAACC
187 CGAAACC
1 CGAAACC
194 CGAAACC
1 CGAAACC
*
201 CGGAATCCC
1 C-GAA-ACC
*
210 CGAACCC
1 CGAAACC
217 CG-AACC
1 CGAAACC
223 TCGACTAACC
1 -CGA--AACC
*
233 C-TAACC
1 CGAAACC
239 ACGAATTACTCC
1 -CGAA--A--CC
251 CGAAACC
1 CGAAACC
258 CGAAACC
1 CGAAACC
*
265 CGGAACC
1 CGAAACC
272 CGAAACTC
1 CGAAAC-C
*
280 CGATACC
1 CGAAACC
*
287 GGAAA-C
1 CGAAACC
*
293 CGCCAACC
1 CG-AAACC
*
301 CGCGAACC
1 CG-AAACC
*
309 CGCATACC
1 CG-AAACC
317 CGAAACC
1 CGAAACC
324 TCG-AA-C
1 -CGAAACC
*
330 CG-ACCC
1 CGAAACC
336 CGAAA-C
1 CGAAACC
342 CG-AACC
1 CGAAACC
348 CGAAACC
1 CGAAACC
355 CGAAACC
1 CGAAACC
362 CGAAACC
1 CGAAACC
* *
369 GGACACC
1 CGAAACC
376 CTG-AACC
1 C-GAAACC
383 CGAATACC
1 CGAA-ACC
391 GCGAAACC
1 -CGAAACC
399 CGAAATCC
1 CGAAA-CC
407 CGAAACC
1 CGAAACC
*
414 CGCAACC
1 CGAAACC
421 CGCAAACC
1 CG-AAACC
*
429 CGACA-C
1 CGAAACC
435 CGAAACC
1 CGAAACC
442 CTGAAA-C
1 C-GAAACC
449 CGAAACC
1 CGAAACC
456 CGATAACC
1 CGA-AACC
464 CGAAACC
1 CGAAACC
*
471 CGCAA--
1 CGAAACC
476 CGAAACCC
1 CGAAA-CC
484 CGGAAACC
1 C-GAAACC
492 CGAAACC
1 CGAAACC
499 CGGAAAACC
1 C-G-AAACC
*
508 CG-TA-C
1 CGAAACC
513 CGAAACC
1 CGAAACC
520 CGAATACC
1 CGAA-ACC
528 CGAAA--
1 CGAAACC
533 CG-AACC
1 CGAAACC
539 CGGAAACC
1 C-GAAACC
547 CGAAACC
1 CGAAACC
554 CGAAA-C
1 CGAAACC
560 CGAAACGAAC
1 CGAAAC---C
570 CGAAACC
1 CGAAACC
* *
577 CGACACA
1 CGAAACC
584 CGAAACC
1 CGAAACC
591 CGAAACC
1 CGAAACC
598 CG-AACC
1 CGAAACC
604 CGAATACC
1 CGAA-ACC
612 CTGAAACC
1 C-GAAACC
620 CGAAACC
1 CGAAACC
627 CGAAACC
1 CGAAACC
634 CGAAACC
1 CGAAACC
641 CGAAACC
1 CGAAACC
648 CGAAAACC
1 CG-AAACC
*
656 CGAACCC
1 CGAAACC
*
663 CGGAAACA
1 C-GAAACC
671 CGAAAACC
1 CG-AAACC
*
679 CGCAACC
1 CGAAACC
686 CGAAACC
1 CGAAACC
693 CGAAACC
1 CGAAACC
700 CGAAACC
1 CGAAACC
*
707 TGAAA-C
1 CGAAACC
713 CG-AACC
1 CGAAACC
719 CGAAA-C
1 CGAAACC
725 CG-AACC
1 CGAAACC
731 CGGAAACC
1 C-GAAACC
*
739 ATTC-AATCCC
1 ---CGAA-ACC
749 CGAAACC
1 CGAAACC
*
756 CGAATCCC
1 CGAA-ACC
764 CGAAACC
1 CGAAACC
771 CGAAACC
1 CGAAACC
778 CGAAA-C
1 CGAAACC
*
784 CTAAACC
1 CGAAACC
791 CGAAAACC
1 CG-AAACC
799 CGATAACC
1 CGA-AACC
807 CGAAACC
1 CGAAACC
814 CGTAAACC
1 CG-AAACC
822 CGAAACC
1 CGAAACC
829 CGATAACC
1 CGA-AACC
837 CGAAACC
1 CGAAACC
*
844 CGACACGC
1 CGAAAC-C
852 CG-AACC
1 CGAAACC
858 CGAAA-C
1 CGAAACC
864 CGAAACCC
1 CGAAA-CC
872 CG-AACC
1 CGAAACC
* *
878 TG-CACC
1 CGAAACC
884 CGAATACC
1 CGAA-ACC
892 CGGAAACC
1 C-GAAACC
900 CGAAACC
1 CGAAACC
907 CGAAAAACC
1 CG--AAACC
916 CTGAAACC
1 C-GAAACC
924 CGATAACC
1 CGA-AACC
932 CTGAAGACC
1 C-GAA-ACC
941 CGAAACC
1 CGAAACC
948 CGAAACC
1 CGAAACC
*
955 CGGATATCC
1 C-GA-AACC
*
964 CGAAA-A
1 CGAAACC
970 CGAAATACC
1 CG-AA-ACC
979 CGAAAACCC
1 CG-AAA-CC
988 GCGAAACC
1 -CGAAACC
996 CGGAAATCC
1 C-GAAA-CC
1005 CGAAACC
1 CGAAACC
1012 CGAAAAACC
1 CG--AAACC
1021 CGAAACC
1 CGAAACC
1028 CGAAACC
1 CGAAACC
1035 CGAAACC
1 CGAAACC
1042 CGAAAACC
1 CG-AAACC
1050 CGTAAACC
1 CG-AAACC
1058 CGAAACC
1 CGAAACC
1065 CGAAAACC
1 CG-AAACC
1073 CGAAACATC
1 CGAAAC--C
1082 CGAATATCC
1 CGAA-A-CC
* *
1091 AGAACCTC
1 CGAAAC-C
1099 CGGAAACC
1 C-GAAACC
*
1107 CGACACCC
1 CGA-AACC
1115 CGAAACC
1 CGAAACC
1122 CGAGAAACC
1 C--GAAACC
1131 CGAAAACC
1 CG-AAACC
1139 CTGAAAACC
1 C-G-AAACC
1148 CGGAAACC
1 C-GAAACC
1156 CGAAACC
1 CGAAACC
1163 CTGAAACC
1 C-GAAACC
*
1171 CTAATACC
1 CGAA-ACC
1179 CGAAACC
1 CGAAACC
1186 CG-AA-C
1 CGAAACC
1191 CGAAA-C
1 CGAAACC
1197 CGAAACC
1 CGAAACC
1204 CGAATACC
1 CGAA-ACC
1212 CGACAACC
1 CGA-AACC
1220 CGAAACTC
1 CGAAAC-C
*
1228 CGCAA-C
1 CGAAACC
1234 CGAACACC
1 CGAA-ACC
1242 CGAAACC
1 CGAAACC
1249 CGAAACC
1 CGAAACC
1256 CGAAACC
1 CGAAACC
1263 CGGAAACC
1 C-GAAACC
**
1271 AATAAACC
1 -CGAAACC
1279 CGATAACC
1 CGA-AACC
*
1287 CTAATACC
1 CGAA-ACC
1295 CGAATACC
1 CGAA-ACC
1303 CGAAACC
1 CGAAACC
*
1310 CGCAACC
1 CGAAACC
*
1317 AGAAAACC
1 CG-AAACC
1325 CGAAACC
1 CGAAACC
1332 CGAAACC
1 CGAAACC
*
1339 CGAAAAC
1 CGAAACC
1346 CGAAACC
1 CGAAACC
1353 CGAAACC
1 CGAAACC
1360 CGAAGAAACC
1 C---GAAACC
1370 CGGAACACC
1 C-GAA-ACC
1379 TCGAAACCC
1 -CGAAA-CC
*
1388 CGCAACC
1 CGAAACC
1395 CGAAACC
1 CGAAACC
*
1402 AGAAACC
1 CGAAACC
*
1409 AGGAAACC
1 -CGAAACC
1417 CGAAACC
1 CGAAACC
1424 CGAAACC
1 CGAAACC
1431 CGAAACC
1 CGAAACC
1438 CTGGAAACCC
1 C--GAAA-CC
1448 CGGAAACC
1 C-GAAACC
1456 CG-AACC
1 CGAAACC
1462 CGAACACC
1 CGAA-ACC
1470 CGAAACC
1 CGAAACC
*
1477 CGAACCC
1 CGAAACC
1484 CGAAACC
1 CGAAACC
*
1491 CGCAACC
1 CGAAACC
1498 CGAAACC
1 CGAAACC
1505 CGAAACC
1 CGAAACC
1512 CGAAACC
1 CGAAACC
1519 CGAAATCC
1 CGAAA-CC
1527 CGAAACCC
1 CGAAA-CC
1535 CGAAACC
1 CGAAACC
1542 CGAAACC
1 CGAAACC
1549 CGAAACCC
1 CGAAA-CC
1557 CGAAAACC
1 CG-AAACC
1565 CGAAACC
1 CGAAACC
1572 CGAAAACTC
1 CG-AAAC-C
*
1581 CGACACC
1 CGAAACC
*
1588 CAAAACC
1 CGAAACC
*
1595 TCGACA-C
1 -CGAAACC
1602 CGAAACC
1 CGAAACC
*
1609 GGAAACC
1 CGAAACC
1616 CGGAAA-C
1 C-GAAACC
1623 CGTAAACC
1 CG-AAACC
1631 CGAAAACC
1 CG-AAACC
1639 CGAAACC
1 CGAAACC
*
1646 CGAAAGC
1 CGAAACC
1653 CGAAACC
1 CGAAACC
1660 CGAATACC
1 CGAA-ACC
*
1668 CGAATCCC
1 CGAA-ACC
1676 CGGAAACC
1 C-GAAACC
1684 CG-AACC
1 CGAAACC
1690 CGGAAACC
1 C-GAAACC
1698 CGAAAACC
1 CG-AAACC
*
1706 CGCAACC
1 CGAAACC
1713 CGAAACC
1 CGAAACC
1720 CGAAAACC
1 CG-AAACC
1728 CGCAAAACC
1 CG--AAACC
1737 CGAAACC
1 CGAAACC
1744 CGTAAACC
1 CG-AAACC
1752 CGAAACC
1 CGAAACC
1759 CGAAACC
1 CGAAACC
1766 CGAAAACC
1 CG-AAACC
1774 CGAAAACC
1 CG-AAACC
*
1782 CGAAAAC
1 CGAAACC
1789 CGAATACC
1 CGAA-ACC
1797 CTGAAAACC
1 C-G-AAACC
*
1806 CGAACCTC
1 CGAAAC-C
1814 CGAATACC
1 CGAA-ACC
1822 TTCGAAAACTC
1 --CG-AAAC-C
1833 CGGAAACCC
1 C-GAAA-CC
*
1842 CTAATACC
1 CGAA-ACC
1850 CGAAAACC
1 CG-AAACC
1858 CGAAACC
1 CGAAACC
1865 CGTAAACCC
1 CG-AAA-CC
1874 CGGAAAACC
1 C-G-AAACC
1883 CGAAACC
1 CGAAACC
1890 CGAAACC
1 CGAAACC
1897 CGAAATACC
1 CG-AA-ACC
1906 CGAAACCC
1 CGAAA-CC
1914 CGAAACC
1 CGAAACC
1921 CGAAA--
1 CGAAACC
1926 CGAAACC
1 CGAAACC
1933 CGAAACC
1 CGAAACC
*
1940 AGAAACC
1 CGAAACC
*
1947 CGCAACC
1 CGAAACC
*
1954 CGCATACC
1 CG-AAACC
1962 CGAAACC
1 CGAAACC
* *
1969 CGCACCC
1 CGAAACC
1976 CGAATA--
1 CGAA-ACC
1982 CGAAACC
1 CGAAACC
1989 CGAAACC
1 CGAAACC
1996 CGAAACC
1 CGAAACC
**
2003 CGCATCCC
1 CG-AAACC
2011 CGAAACC
1 CGAAACC
*
2018 CGAAACG
1 CGAAACC
*
2025 CTATAACC
1 CGA-AACC
*
2033 CTAAACC
1 CGAAACC
2040 CGAAAACC
1 CG-AAACC
*
2048 CTAAACC
1 CGAAACC
2055 CTGTAGAAACC
1 C----GAAACC
*
2066 CGACACC
1 CGAAACC
2073 CGAAAACC
1 CG-AAACC
2081 CGAAACC
1 CGAAACC
2088 CG-AACC
1 CGAAACC
2094 CGAAACGC
1 CGAAAC-C
*
2102 CTTAAACC
1 C-GAAACC
2110 TCGAAACC
1 -CGAAACC
*
2118 TGAAACC
1 CGAAACC
2125 CTGAAACC
1 C-GAAACC
2133 CGAAACC
1 CGAAACC
2140 CGAAACC
1 CGAAACC
2147 CGAGAACC
1 CGA-AACC
*
2155 CGACACC
1 CGAAACC
2162 CGAATACC
1 CGAA-ACC
2170 CGAAACC
1 CGAAACC
*
2177 CGACAA-A
1 CGA-AACC
2184 C-AAACC
1 CGAAACC
2190 CGGAAACCC
1 C-GAAA-CC
2199 CGAAACTC
1 CGAAAC-C
2207 CGTAAACC
1 CG-AAACC
2215 CGTAAA--
1 CG-AAACC
*
2221 -AAAACCTC
1 CGAAA-C-C
2229 CGAATACCC
1 CGAA-A-CC
2238 CG-AA-C
1 CGAAACC
*
2243 CGTAACCC
1 CG-AAACC
2251 CGAAACC
1 CGAAACC
2258 CGGAATACC
1 C-GAA-ACC
2267 CGGAAACC
1 C-GAAACC
2275 CGGGAAACC
1 C--GAAACC
2284 CGTAAATACC
1 CG--AA-ACC
*
2294 C-CAACC
1 CGAAACC
2300 CGAAACC
1 CGAAACC
2307 CGAAACC
1 CGAAACC
2314 CGAAACC
1 CGAAACC
2321 CTTG-AA-C
1 C--GAAACC
2328 CGTAAACC
1 CG-AAACC
2336 CTGAAACC
1 C-GAAACC
2344 CGAAATCC
1 CGAAA-CC
*
2352 CGACACC
1 CGAAACC
2359 TCGAAACC
1 -CGAAACC
2367 CGAAACC
1 CGAAACC
2374 CGAAACC
1 CGAAACC
2381 CGTGAAACC
1 C--GAAACC
2390 CGAAACCC
1 CGAAA-CC
*
2398 CGACACC
1 CGAAACC
2405 CGAAAACC
1 CG-AAACC
2413 CGAAACC
1 CGAAACC
2420 CGAAGA-C
1 CGAA-ACC
2427 CGAAACC
1 CGAAACC
2434 CGGGAAACC
1 C--GAAACC
*
2443 CTTGAACCC
1 C--GAAACC
*
2452 CGAACCC
1 CGAAACC
*
2459 CGACACC
1 CGAAACC
2466 CGAAACC
1 CGAAACC
2473 CGGAAAACC
1 C-G-AAACC
2482 CG-AACC
1 CGAAACC
2488 CG-AACC
1 CGAAACC
2494 CGAATATCC
1 CGAA-A-CC
2503 CGACAACC
1 CGA-AACC
2511 CTGAAATCC
1 C-GAAA-CC
2520 CGAAACC
1 CGAAACC
2527 CGAAACC
1 CGAAACC
2534 CGAAAACC
1 CG-AAACC
2542 CGATGAAACC
1 C---GAAACC
*
2552 TCGAACCC
1 -CGAAACC
2560 CGAAAGACC
1 CG-AA-ACC
2569 CG-AACC
1 CGAAACC
*
2575 CTGAATCC
1 C-GAAACC
*
2583 CGTAACCC
1 CG-AAACC
2591 CGATAA-C
1 CGA-AACC
2598 CGAAACC
1 CGAAACC
2605 CGATAATCC
1 CGA-AA-CC
*
2614 GGAAACC
1 CGAAACC
*
2621 CGAAACT
1 CGAAACC
2628 CGAAAAAAGCC
1 CG---AAA-CC
2639 CGAAACTC
1 CGAAAC-C
*
2647 CTGGAACC
1 C-GAAACC
2655 CGAAACC
1 CGAAACC
2662 CG-AACC
1 CGAAACC
2668 CGAAACC
1 CGAAACC
2675 TCGAAACC
1 -CGAAACC
2683 TCG-AACC
1 -CGAAACC
*
2690 AGAAAACC
1 CG-AAACC
2698 CGAAACC
1 CGAAACC
2705 CGAAACC
1 CGAAACC
2712 CGGACAACC
1 C-GA-AACC
2721 CGAATACC
1 CGAA-ACC
2729 CGAAACC
1 CGAAACC
*
2736 CGATACC
1 CGAAACC
2743 CGAAACC
1 CGAAACC
2750 CG-AA-C
1 CGAAACC
2755 CGAAACC
1 CGAAACC
*
2762 CGCAA-C
1 CGAAACC
2768 CGAAACC
1 CGAAACC
2775 CGGAAACC
1 C-GAAACC
* *
2783 CGCAGCC
1 CGAAACC
2790 CGAAACC
1 CGAAACC
*
2797 CGCAACC
1 CGAAACC
*
2804 CGAATCC
1 CGAAACC
2811 CGAAACC
1 CGAAACC
2818 CTGAAACC
1 C-GAAACC
2826 CGTGAAACC
1 C--GAAACC
2835 CGATAA-C
1 CGA-AACC
2842 C-AAACC
1 CGAAACC
2848 CGAAAACC
1 CG-AAACC
2856 CGAAACC
1 CGAAACC
**
2863 CGGCCACC
1 C-GAAACC
2871 CGGAAA-C
1 C-GAAACC
2878 CG-AA-C
1 CGAAACC
2883 CGAAACC
1 CGAAACC
2890 CTTGAAACC
1 C--GAAACC
2899 CGAAACC
1 CGAAACC
2906 CTGAATAACCC
1 C-G-A-AA-CC
2917 CGAAACC
1 CGAAACC
2924 CGAAACC
1 CGAAACC
2931 CGAAACC
1 CGAAACC
*
2938 CGTAACC
1 CGAAACC
*
2945 CGAACAACT
1 CG-A-AACC
2954 CGAAACTC
1 CGAAAC-C
2962 CGAAACCC
1 CGAAA-CC
*
2970 GCGAACCC
1 -CGAAACC
2978 CGAAACC
1 CGAAACC
2985 CGAAACC
1 CGAAACC
2992 CGAAAACC
1 CG-AAACC
3000 CG-AACC
1 CGAAACC
3006 CGAAACCC
1 CGAAA-CC
3014 CGAAACTC
1 CGAAAC-C
3022 CGAACACC
1 CGAA-ACC
3030 CGGAAACC
1 C-GAAACC
*
3038 CGCAACC
1 CGAAACC
3045 CGAAA-C
1 CGAAACC
3051 CGAAACC
1 CGAAACC
3058 TCGAAACC
1 -CGAAACC
3066 CGAAACC
1 CGAAACC
3073 CGAAACC
1 CGAAACC
3080 CGAAACC
1 CGAAACC
3087 CGAAACC
1 CGAAACC
3094 CGAAACC
1 CGAAACC
3101 CGAAACC
1 CGAAACC
3108 CGAAACCC
1 CGAAA-CC
3116 CGGAAACC
1 C-GAAACC
3124 CGGACAAACCC
1 C-G--AAA-CC
*
3135 CGGAAAAC
1 C-GAAACC
*
3143 CGACACC
1 CGAAACC
3150 CTGAAAACC
1 C-G-AAACC
3159 CGAAACC
1 CGAAACC
3166 CGAAACC
1 CGAAACC
*
3173 TGAAAACC
1 CG-AAACC
3181 CGGAAACC
1 C-GAAACC
* *
3189 CGCACCC
1 CGAAACC
3196 CGAAAAACC
1 CG--AAACC
*
3205 CGACACC
1 CGAAACC
3212 CGAAA-C
1 CGAAACC
*
3218 CGCAACC
1 CGAAACC
*
3225 CGCCATACC
1 CG--AAACC
3234 CGAAACC
1 CGAAACC
3241 CTGGAAACTCC
1 C--GAAA--CC
3252 CGAAACC
1 CGAAACC
3259 CGAAACC
1 CGAAACC
3266 CGAAAACC
1 CG-AAACC
3274 CGAAACC
1 CGAAACC
3281 CGAAACC
1 CGAAACC
3288 CGATAACC
1 CGA-AACC
3296 CGAAA-C
1 CGAAACC
3302 CGTAAACC
1 CG-AAACC
3310 CGAAAACC
1 CG-AAACC
*
3318 CTAAACC
1 CGAAACC
3325 CGAAACTGC
1 CGAAAC--C
3334 GCGAAACC
1 -CGAAACC
3342 CGAAACC
1 CGAAACC
3349 CGAAGCACC
1 CGAA--ACC
3358 CGAAACC
1 CGAAACC
3365 CGAAACC
1 CGAAACC
3372 CGAAACC
1 CGAAACC
3379 CGAAACC
1 CGAAACC
3386 CGGGAAA-C
1 C--GAAACC
3394 CGAAACC
1 CGAAACC
*
3401 CGCAACC
1 CGAAACC
3408 CGCTAATATCC
1 CG--AA-A-CC
3419 CGAAACC
1 CGAAACC
3426 CGATACACC
1 CGA-A-ACC
3435 CGAAACC
1 CGAAACC
3442 CG-AACC
1 CGAAACC
3448 TCGAAACC
1 -CGAAACC
3456 CGAAAAAACC
1 CG---AAACC
3466 CGAAACCC
1 CGAAA-CC
3474 CGACAACC
1 CGA-AACC
3482 CGGAAAACC
1 C-G-AAACC
3491 TCGAAATACCC
1 -CG-AA-A-CC
3502 CGAAACC
1 CGAAACC
3509 CGAAA-C
1 CGAAACC
3515 CG-AACC
1 CGAAACC
3521 CGGAACACC
1 C-GAA-ACC
*
3530 C-ATAAAC
1 CGA-AACC
3537 CGTAAAACC
1 CG--AAACC
*
3546 CGAACCC
1 CGAAACC
3553 CGAAACC
1 CGAAACC
3560 CGAAACC
1 CGAAACC
3567 CG-AACC
1 CGAAACC
*
3573 CTCAAA-C
1 C-GAAACC
3580 CGAAACC
1 CGAAACC
3587 CGAAA-C
1 CGAAACC
3593 CGATAATCC
1 CGA-AA-CC
3602 CG-AACC
1 CGAAACC
3608 CGGAAACC
1 C-GAAACC
*
3616 CGGAATCCC
1 C-GAA-ACC
*
3625 CTAAA-C
1 CGAAACC
3631 CGAAACC
1 CGAAACC
*
3638 AGAAATCC
1 CGAAA-CC
3646 CGAAACC
1 CGAAACC
3653 CGAAAACC
1 CG-AAACC
*
3661 CGCAA--
1 CGAAACC
3666 CGAAGACTC
1 CGAA-AC-C
3675 CGAAA-C
1 CGAAACC
*
3681 CGCAACC
1 CGAAACC
3688 CGAAACC
1 CGAAACC
3695 CGAAACC
1 CGAAACC
3702 CG-AACC
1 CGAAACC
3708 CGAAAACC
1 CG-AAACC
3716 CGAAACC
1 CGAAACC
3723 CGAAACC
1 CGAAACC
3730 CGAAACC
1 CGAAACC
3737 CGAAACCCC
1 CGAAA--CC
3746 CGAAACC
1 CGAAACC
3753 C-AAACC
1 CGAAACC
3759 CGAAACC
1 CGAAACC
*
3766 AGAAACCC
1 CGAAA-CC
3774 CTGAAACC
1 C-GAAACC
3782 CGAAACC
1 CGAAACC
3789 CGAAA--
1 CGAAACC
3794 CGAAACC
1 CGAAACC
3801 CGAAACC
1 CGAAACC
**
3808 CTCAACC
1 CGAAACC
3815 CGAATACC
1 CGAA-ACC
3823 CGAAACCC
1 CGAAA-CC
3831 CGAAAACC
1 CG-AAACC
*
3839 CG-CACTC
1 CGAAAC-C
3846 CGGAAACC
1 C-GAAACC
3854 GCGAAACC
1 -CGAAACC
3862 CGAAACC
1 CGAAACC
3869 CGAAACC
1 CGAAACC
3876 CGAAACC
1 CGAAACC
3883 CGAAACC
1 CGAAACC
3890 CGAAAACC
1 CG-AAACC
3898 CGAAACC
1 CGAAACC
3905 CGAAA-C
1 CGAAACC
3911 CGAAATCC
1 CGAAA-CC
3919 CGAAACTC
1 CGAAAC-C
3927 CGAAACTC
1 CGAAAC-C
*
3935 CGCAACC
1 CGAAACC
3942 CGAAACC
1 CGAAACC
3949 CGAAACC
1 CGAAACC
3956 CGAAA-C
1 CGAAACC
*
3962 CTAAA-C
1 CGAAACC
3968 CGAATACC
1 CGAA-ACC
3976 CGAAACC
1 CGAAACC
3983 CG-AA-C
1 CGAAACC
*
3988 CTAAACC
1 CGAAACC
3995 CGAAAACC
1 CG-AAACC
4003 CGAAA--
1 CGAAACC
4008 CGAAACC
1 CGAAACC
4015 CTGAAAACC
1 C-G-AAACC
4024 CGAAACCC
1 CGAAA-CC
4032 CGAAATCC
1 CGAAA-CC
*
4040 GGAAAACC
1 CG-AAACC
*
4048 CG-CACC
1 CGAAACC
4054 CGAAACC
1 CGAAACC
4061 CGAAACC
1 CGAAACC
4068 CGAAA-C
1 CGAAACC
*
4074 CTAAACC
1 CGAAACC
4081 CGAAACC
1 CGAAACC
4088 CGAAACC
1 CGAAACC
4095 CGAAAACC
1 CG-AAACC
*
4103 CGATACTC
1 CGAAAC-C
4111 CGAAACC
1 CGAAACC
*
4118 CGACACC
1 CGAAACC
4125 CGAAGACC
1 CGAA-ACC
4133 CGAAA-C
1 CGAAACC
4139 CGAAACC
1 CGAAACC
4146 CGAAACC
1 CGAAACC
4153 CGTAAACCC
1 CG-AAA-CC
4162 CGATAAACC
1 CG--AAACC
4171 CTGAAACC
1 C-GAAACC
4179 CGAAACC
1 CGAAACC
4186 CGAAACC
1 CGAAACC
4193 CGAAA-C
1 CGAAACC
4199 CGAAAACC
1 CG-AAACC
4207 CGAAAGCC
1 CGAAA-CC
*
4215 CTAATA-C
1 CGAA-ACC
4222 CGAAACC
1 CGAAACC
4229 CGAAACC
1 CGAAACC
4236 CGAAACC
1 CGAAACC
4243 CGGAAACC
1 C-GAAACC
4251 CGAAAACC
1 CG-AAACC
*
4259 C-TAACC
1 CGAAACC
4265 CGAAACC
1 CGAAACC
4272 CGAAA-C
1 CGAAACC
* *
4278 C-TAACT
1 CGAAACC
4284 CGAAACTTC
1 CGAAAC--C
*
4293 CGACACC
1 CGAAACC
4300 CG-AACAC
1 CGAAAC-C
*
4307 CTAAACC
1 CGAAACC
*
4314 CGCACACC
1 CG-AAACC
4322 CGAAAACC
1 CG-AAACC
4330 CGAAACC
1 CGAAACC
4337 CGAAACC
1 CGAAACC
*
4344 CTAACACC
1 CGAA-ACC
*
4352 CGAACCC
1 CGAAACC
4359 CGCTAAACC
1 CG--AAACC
*
4368 CGAACTCTC
1 CGAA-AC-C
4377 CGACAACC
1 CGA-AACC
4385 CGAAACC
1 CGAAACC
4392 CG-AA-C
1 CGAAACC
*
4397 CGAACCC
1 CGAAACC
4404 CGCAAACC
1 CG-AAACC
*
4412 CGGACACC
1 C-GAAACC
*
4420 AGAAA-C
1 CGAAACC
4426 CG-AACC
1 CGAAACC
4432 CGAAACC
1 CGAAACC
4439 CG-AACC
1 CGAAACC
*
4445 CTAAACC
1 CGAAACC
4452 CGAAAACC
1 CG-AAACC
*
4460 CGGACACC
1 C-GAAACC
4468 CGAAATACC
1 CG-AA-ACC
4477 CGAATATCC
1 CGAA-A-CC
4486 CGAAACC
1 CGAAACC
*
4493 CGAACCC
1 CGAAACC
4500 CGAAAACC
1 CG-AAACC
*
4508 GGAAACC
1 CGAAACC
*
4515 CGACACC
1 CGAAACC
*
4522 CGACACC
1 CGAAACC
*
4529 CTGAACCCC
1 C-GAA-ACC
4538 CGAAACC
1 CGAAACC
*
4545 CGACACC
1 CGAAACC
4552 CGAAACC
1 CGAAACC
4559 CGAAA-C
1 CGAAACC
*
4565 CGACACC
1 CGAAACC
4572 CGAAAACC
1 CG-AAACC
4580 CGAAA-C
1 CGAAACC
*
4586 CGACACAC
1 CGAAAC-C
*
4594 TGAAACCC
1 CGAAA-CC
4602 TCGGAAACC
1 -C-GAAACC
*
4611 CGAAACA
1 CGAAACC
4618 CGAATACCC
1 CGAA-A-CC
4627 CGTATAACC
1 CG-A-AACC
* *
4636 TGATACC
1 CGAAACC
4643 CGAAACC
1 CGAAACC
*
4650 CG-ACCC
1 CGAAACC
4656 CGAAACC
1 CGAAACC
4663 CGAAACC
1 CGAAACC
4670 CG-AACC
1 CGAAACC
4676 CGAAACC
1 CGAAACC
*
4683 CGAACCC
1 CGAAACC
4690 CGTAAACC
1 CG-AAACC
*
4698 CGACA-C
1 CGAAACC
4704 CGAAA-C
1 CGAAACC
4710 C-AAACCC
1 CGAAA-CC
4717 CGAAACC
1 CGAAACC
4724 CGAAACC
1 CGAAACC
4731 CGAAAACC
1 CG-AAACC
*
4739 CGAACCC
1 CGAAACC
4746 CGAAACC
1 CGAAACC
*
4753 CGAACCC
1 CGAAACC
4760 CGAATAACCC
1 CG-A-AA-CC
4770 CG-AA-C
1 CGAAACC
4775 CGAAACC
1 CGAAACC
*
4782 CGGGAACCC
1 C--GAAACC
4791 CGAAAACC
1 CG-AAACC
4799 CGAAACC
1 CGAAACC
4806 CGTAAACC
1 CG-AAACC
*
4814 CTAAAAACC
1 C--GAAACC
4823 CTGAAACC
1 C-GAAACC
*
4831 CGAATCC
1 CGAAACC
4838 CAGAAACC
1 C-GAAACC
*
4846 CAAAACC
1 CGAAACC
4853 CGAAACC
1 CGAAACC
4860 CGATAAACC
1 CG--AAACC
4869 CGAAACC
1 CGAAACC
4876 CGAAAACC
1 CG-AAACC
4884 CGAAACC
1 CGAAACC
4891 CGAAACC
1 CGAAACC
4898 CGAAACC
1 CGAAACC
4905 CGAAAACCC
1 CG-AAA-CC
4914 CGAAACC
1 CGAAACC
4921 CG-AACC
1 CGAAACC
4927 CGGTAAACC
1 C-G-AAACC
4936 CGAAACC
1 CGAAACC
4943 CGAAACC
1 CGAAACC
4950 CGAAACC
1 CGAAACC
*
4957 CGCATATCC
1 CG-A-AACC
4966 CGAAACC
1 CGAAACC
4973 CGAAACCC
1 CGAAA-CC
4981 CG-AACC
1 CGAAACC
4987 CGGAAACC
1 C-GAAACC
4995 CGAAACC
1 CGAAACC
5002 CGGAAA-C
1 C-GAAACC
5009 CGAATACC
1 CGAA-ACC
5017 CGAAACC
1 CGAAACC
*
5024 CGACACC
1 CGAAACC
5031 CGAAAACAC
1 CG-AAAC-C
*
5040 TGAAACC
1 CGAAACC
5047 CGAAACC
1 CGAAACC
5054 CGAAACC
1 CGAAACC
*
5061 CGCAACC
1 CGAAACC
5068 CGGAAACC
1 C-GAAACC
*
5076 CTAAACC
1 CGAAACC
5083 CG-AACC
1 CGAAACC
5089 CGAAACC
1 CGAAACC
*
5096 CGACACC
1 CGAAACC
5103 CGAACACC
1 CGAA-ACC
5111 CGAAACC
1 CGAAACC
5118 CGAAACTCC
1 CGAAA--CC
5127 CGAAACC
1 CGAAACC
5134 CGAAA-C
1 CGAAACC
*
5140 CGGAACC
1 CGAAACC
**
5147 CGGTCTCACC
1 C-G--AAACC
5157 CGAAAATCC
1 CG-AAA-CC
5166 CGAAA-C
1 CGAAACC
5172 CGAAACC
1 CGAAACC
*
5179 CG-AACTT
1 CGAAAC-C
5186 CGAAATACC
1 CG-AA-ACC
*
5195 CGACACC
1 CGAAACC
5202 CGAAACC
1 CGAAACC
5209 CGAAACCC
1 CGAAA-CC
5217 CGAAAACC
1 CG-AAACC
5225 CGAAACC
1 CGAAACC
*
5232 CGAAATC
1 CGAAACC
*
5239 CGACACC
1 CGAAACC
5246 CGAAACC
1 CGAAACC
*
5253 CTGAACCC
1 C-GAAACC
5261 CGAAACC
1 CGAAACC
5268 CGGAAATCC
1 C-GAAA-CC
5277 CGGAAACC
1 C-GAAACC
*
5285 C-CAACC
1 CGAAACC
5291 CGAAATACC
1 CG-AA-ACC
5300 CGAAACC
1 CGAAACC
5307 CGAAACC
1 CGAAACC
5314 CTGAAACC
1 C-GAAACC
5322 CGAAACCC
1 CGAAA-CC
*
5330 CAAAACCC
1 CGAAA-CC
*
5338 CGACACC
1 CGAAACC
5345 CGAAACC
1 CGAAACC
5352 CGAAAACC
1 CG-AAACC
5360 CG-AACC
1 CGAAACC
5366 CGAAACTC
1 CGAAAC-C
5374 CGAAACC
1 CGAAACC
5381 CG-AACC
1 CGAAACC
5387 CGAAA-C
1 CGAAACC
5393 CGAAACC
1 CGAAACC
5400 CGAAACC
1 CGAAACC
5407 CGAAA-C
1 CGAAACC
5413 CGAAACC
1 CGAAACC
*
5420 CGGAACC
1 CGAAACC
5427 CGAAACC
1 CGAAACC
5434 CGAAACC
1 CGAAACC
5441 GCG-AACC
1 -CGAAACC
5448 CTGTAAACC
1 C-G-AAACC
5457 CGAAACC
1 CGAAACC
5464 CG-AA-C
1 CGAAACC
5469 CGAAACC
1 CGAAACC
5476 CGAAACC
1 CGAAACC
5483 CGATAACCTC
1 CGA-AA-C-C
5493 GCAGAAACC
1 -C-GAAACC
5502 CTG-AACC
1 C-GAAACC
*
5509 CGGCAA-C
1 C-GAAACC
*
5516 CGACA-C
1 CGAAACC
5522 CGAAACC
1 CGAAACC
**
5529 AAAAACC
1 CGAAACC
5536 CGGAAACC
1 C-GAAACC
5544 CGAAACC
1 CGAAACC
5551 CGAAACC
1 CGAAACC
5558 CGAAATCC
1 CGAAA-CC
5566 CGAAAACC
1 CG-AAACC
*
5574 AGATAAAACC
1 CG---AAACC
5584 CGAAACC
1 CGAAACC
5591 CG-AACC
1 CGAAACC
5597 CGAAATACC
1 CG-AA-ACC
*
5606 CGGAACC
1 CGAAACC
*
5613 CTAAACC
1 CGAAACC
5620 CGCAAACTC
1 CG-AAAC-C
5629 CGAAACC
1 CGAAACC
*
5636 CGCAACC
1 CGAAACC
5643 CGAAACC
1 CGAAACC
5650 CGAAACC
1 CGAAACC
5657 TCGAAACC
1 -CGAAACC
5665 CGAAACC
1 CGAAACC
5672 CTGAAACC
1 C-GAAACC
5680 CGGAAATCC
1 C-GAAA-CC
*
5689 CGAAAAC
1 CGAAACC
*
5696 CGACACC
1 CGAAACC
5703 CGAACACC
1 CGAA-ACC
5711 CGAAACC
1 CGAAACC
5718 CGAAACC
1 CGAAACC
5725 CGAAACC
1 CGAAACC
5732 CGAAACC
1 CGAAACC
5739 CG-AA-C
1 CGAAACC
*
5744 CTAAACC
1 CGAAACC
5751 CGGAAA-C
1 C-GAAACC
5758 CGTAAACC
1 CG-AAACC
5766 CGAAACC
1 CGAAACC
5773 CGAAACC
1 CGAAACC
*
5780 CG-CACC
1 CGAAACC
5786 C-AAACC
1 CGAAACC
5792 CGAAACC
1 CGAAACC
5799 CGAAACCTC
1 CGAAA-C-C
5808 CGAAACC
1 CGAAACC
5815 C-AAACC
1 CGAAACC
*
5821 CGTAACC
1 CGAAACC
5828 CGATAAACC
1 CG--AAACC
5837 CGAAACC
1 CGAAACC
5844 CTGAAACC
1 C-GAAACC
5852 CGGTAAACTC
1 C-G-AAAC-C
5862 CG-AACC
1 CGAAACC
*
5868 CGAATAAAC
1 CG-A-AACC
5877 C-AAACC
1 CGAAACC
5883 CGAAACC
1 CGAAACC
5890 CGAAACC
1 CGAAACC
5897 CTG-AACC
1 C-GAAACC
*
5904 CGGAAACT
1 C-GAAACC
5912 CGAAAACC
1 CG-AAACC
5920 CGAAACC
1 CGAAACC
5927 GCGAAACC
1 -CGAAACC
5935 CTGTAATAAACC
1 C-G----AAACC
5947 CGAAACC
1 CGAAACC
5954 CGAAA-C
1 CGAAACC
5960 CGAAA-C
1 CGAAACC
* *
5966 CGAGACA
1 CGAAACC
5973 CGAAAACTC
1 CG-AAAC-C
5982 CGAAAACC
1 CG-AAACC
5990 CGAAAAACC
1 CG--AAACC
5999 CGAAACC
1 CGAAACC
6006 CG-AACC
1 CGAAACC
6012 CGAAAACC
1 CG-AAACC
6020 CGAAACC
1 CGAAACC
6027 CGAAATCC
1 CGAAA-CC
6035 CGAAACC
1 CGAAACC
6042 CGAAACC
1 CGAAACC
6049 CGAAA-C
1 CGAAACC
*
6055 CGCAACC
1 CGAAACC
6062 CGAAATCCC
1 CGAAA--CC
6071 CGAAACC
1 CGAAACC
*
6078 CTATAACC
1 CGA-AACC
6086 CGAAACC
1 CGAAACC
6093 CG--ACC
1 CGAAACC
6098 TCGAAACC
1 -CGAAACC
6106 CGAAACC
1 CGAAACC
6113 CGATAACC
1 CGA-AACC
6121 CGAAAAACC
1 CG--AAACC
6130 CGAAACC
1 CGAAACC
6137 CGAAACTC
1 CGAAAC-C
6145 CGAAACC
1 CGAAACC
*
6152 TCTAAACC
1 -CGAAACC
6160 CGAAACC
1 CGAAACC
*
6167 CGCAACC
1 CGAAACC
6174 CG-AACTC
1 CGAAAC-C
*
6181 CGGAATCCC
1 C-GAA-ACC
6190 CGAAAACC
1 CG-AAACC
*
6198 CTAAACC
1 CGAAACC
6205 CGAAA--
1 CGAAACC
*
6210 CGCAACC
1 CGAAACC
6217 CG-AACC
1 CGAAACC
6223 CGAAACC
1 CGAAACC
6230 CG-AA-C
1 CGAAACC
6235 CGTAAAAATCC
1 CG---AAA-CC
**
6246 CTCAACC
1 CGAAACC
*
6253 CGCAACC
1 CGAAACC
6260 CTGGAAACC
1 C--GAAACC
6269 CGAAACC
1 CGAAACC
6276 C-AAACC
1 CGAAACC
*
6282 CGTAAAAC
1 CG-AAACC
*
6290 CG-CACC
1 CGAAACC
6296 CGTAAAACC
1 CG--AAACC
*
6305 CGCAA-C
1 CGAAACC
6311 CGAAACC
1 CGAAACC
* *
6318 CGCATCC
1 CGAAACC
6325 CG-AACC
1 CGAAACC
*
6331 ACGACA-C
1 -CGAAACC
6338 CGAAACC
1 CGAAACC
6345 CGAAACC
1 CGAAACC
6352 CG-AACC
1 CGAAACC
*
6358 CTG-ACCC
1 C-GAAACC
6365 CGAATA-C
1 CGAA-ACC
6372 CGAAATCTC
1 CGAAA-C-C
6381 CGTAGAAACC
1 C---GAAACC
6391 CGATAACC
1 CGA-AACC
6399 CGAAACC
1 CGAAACC
6406 CGAAACC
1 CGAAACC
*
6413 CGAACCC
1 CGAAACC
*
6420 CGCAACC
1 CGAAACC
6427 CGGAAACC
1 C-GAAACC
*
6435 CGCAACC
1 CGAAACC
6442 CGAGAAACC
1 C--GAAACC
6451 CGAAACC
1 CGAAACC
*
6458 CGAGAAAAC
1 C--GAAACC
*
6467 CGAAAAC
1 CGAAACC
6474 CGAAACC
1 CGAAACC
6481 CGAAACC
1 CGAAACC
6488 CGAAA-C
1 CGAAACC
*
6494 CGAAGAAAC
1 CG-A-AACC
6503 CGAAACC
1 CGAAACC
6510 CGAAACC
1 CGAAACC
6517 CGCAAACCTC
1 CG-AAA-C-C
6527 CG-AACC
1 CGAAACC
6533 CGAAAACC
1 CG-AAACC
6541 CGAAACC
1 CGAAACC
*
6548 AGAAA-C
1 CGAAACC
6554 CGAAACTC
1 CGAAAC-C
6562 C--AACC
1 CGAAACC
6567 CGGGAAACC
1 C--GAAACC
6576 CTGAAACACC
1 C-G-AA-ACC
6586 CGAAA-C
1 CGAAACC
*
6592 CGACACC
1 CGAAACC
6599 CGAAACC
1 CGAAACC
6606 CGAAACCC
1 CGAAA-CC
*
6614 CTAAACC
1 CGAAACC
6621 CGAAACC
1 CGAAACC
6628 CGAAAACTC
1 CG-AAAC-C
6637 CGAAACC
1 CGAAACC
6644 CGAAA-C
1 CGAAACC
6650 CG--ACC
1 CGAAACC
*
6655 TGAAACCC
1 CGAAA-CC
6663 GCGAAACC
1 -CGAAACC
6671 CGAAACC
1 CGAAACC
6678 CGAAACC
1 CGAAACC
6685 CGAAA-C
1 CGAAACC
6691 CGAATACC
1 CGAA-ACC
6699 CGAAACC
1 CGAAACC
6706 CGAAACC
1 CGAAACC
*
6713 CGCAA-C
1 CGAAACC
*
6719 CGCAACC
1 CGAAACC
6726 CGGAAACC
1 C-GAAACC
6734 CGAAACC
1 CGAAACC
6741 C-AAACC
1 CGAAACC
6747 CGAAACC
1 CGAAACC
*
6754 CTAAACC
1 CGAAACC
6761 CGAAACC
1 CGAAACC
6768 CGAAACC
1 CGAAACC
*
6775 CGAAAAC
1 CGAAACC
6782 CGAAA-C
1 CGAAACC
6788 CGAAAAACC
1 CG--AAACC
6797 CGAAACC
1 CGAAACC
6804 C-ATAACC
1 CGA-AACC
6811 CGAAACC
1 CGAAACC
6818 CTGAAACC
1 C-GAAACC
6826 CGAAA-C
1 CGAAACC
*
6832 GGAAACC
1 CGAAACC
6839 TCGAAACC
1 -CGAAACC
*
6847 CGGAAATC
1 C-GAAACC
6855 CGAAAACC
1 CG-AAACC
6863 CGAAACC
1 CGAAACC
6870 CGAAACC
1 CGAAACC
6877 CGAAACC
1 CGAAACC
6884 CGAAACC
1 CGAAACC
* *
6891 TGGACACC
1 -CGAAACC
6899 CGAGAAACC
1 C--GAAACC
6908 CGAAACC
1 CGAAACC
*
6915 GCGCAAGCC
1 -CG-AAACC
6924 CGTAAACC
1 CG-AAACC
6932 CGAAACC
1 CGAAACC
6939 CGAAACC
1 CGAAACC
6946 CGGAAACC
1 C-GAAACC
6954 CGAATAAACC
1 CG---AAACC
*
6964 CGATCTACC
1 CGA--AACC
6973 CGTAAACC
1 CG-AAACC
*
6981 CTAAACC
1 CGAAACC
* *
6988 CGCACCC
1 CGAAACC
6995 CGAAACC
1 CGAAACC
*
7002 CTAAACC
1 CGAAACC
7009 CGAAACC
1 CGAAACC
7016 CGAAA-C
1 CGAAACC
7022 CGAAACC
1 CGAAACC
7029 CGAAACAC
1 CGAAAC-C
*
7037 GGAAACC
1 CGAAACC
*
7044 CGAATAATC
1 CG-A-AACC
7053 CGAAACC
1 CGAAACC
7060 TCGAAACC
1 -CGAAACC
7068 CGAAACCC
1 CGAAA-CC
7076 CGAAACC
1 CGAAACC
7083 CGAAACC
1 CGAAACC
7090 CGAAAACC
1 CG-AAACC
7098 CGTTGAAACC
1 C---GAAACC
7108 CGAAACC
1 CGAAACC
7115 CGATAACCC
1 CGA-AA-CC
*
7124 CCAAACC
1 CGAAACC
7131 CGGTTTAAATCC
1 C-G---AAA-CC
*
7143 CGCAACC
1 CGAAACC
7150 CGAAACC
1 CGAAACC
7157 C-AAACC
1 CGAAACC
*
7163 CGGAACC
1 CGAAACC
7170 CTGAAACC
1 C-GAAACC
7178 CGAAACC
1 CGAAACC
*
7185 CGCAA-C
1 CGAAACC
7191 CGAAA-C
1 CGAAACC
*
7197 TG-AACC
1 CGAAACC
7203 CGAAACC
1 CGAAACC
* *
7210 TGATACCC
1 CGA-AACC
7218 CGAAACC
1 CGAAACC
7225 CGAGAAACC
1 C--GAAACC
7234 CGAAACC
1 CGAAACC
7241 CGATAACC
1 CGA-AACC
*
7249 CGACACC
1 CGAAACC
7256 CGAAACC
1 CGAAACC
* *
7263 CGCAACTA
1 CGAAAC-C
*
7271 CGAATCC
1 CGAAACC
7278 CGAAATCC
1 CGAAA-CC
7286 CGAAAACC
1 CG-AAACC
7294 CGGAAA-C
1 C-GAAACC
*
7301 AGAAA-C
1 CGAAACC
7307 CG-AACC
1 CGAAACC
7313 CGAAACC
1 CGAAACC
7320 CGAAACC
1 CGAAACC
7327 CGAAAACC
1 CG-AAACC
7335 GCG-AACC
1 -CGAAACC
7342 CGAAACCC
1 CGAAA-CC
7350 CGAAACC
1 CGAAACC
7357 C--AACC
1 CGAAACC
*
7362 CTTAAACC
1 C-GAAACC
7370 CGAAACC
1 CGAAACC
7377 CGAAACC
1 CGAAACC
7384 CGACAACC
1 CGA-AACC
7392 CGAAACC
1 CGAAACC
7399 CGAAAACACC
1 CG--AA-ACC
7409 CGAAACC
1 CGAAACC
*
7416 CTACAACC
1 CGA-AACC
7424 CGAAACC
1 CGAAACC
7431 CG-AACC
1 CGAAACC
7437 CG-AACC
1 CGAAACC
7443 CTGGGAAACC
1 C---GAAACC
7453 CGAAACC
1 CGAAACC
*
7460 CGAATCCC
1 CGAA-ACC
7468 CGCAAACC
1 CG-AAACC
*
7476 CTGACACC
1 C-GAAACC
*
7484 CTAAACC
1 CGAAACC
7491 ACGAAA-C
1 -CGAAACC
*
7498 CTAAACC
1 CGAAACC
7505 CGCAAACC
1 CG-AAACC
7513 CGAAACC
1 CGAAACC
7520 CGAAACC
1 CGAAACC
7527 CTGAAACC
1 C-GAAACC
7535 CGAAACC
1 CGAAACC
7542 CGACAACC
1 CGA-AACC
*
7550 CTAAACC
1 CGAAACC
*
7557 CTAAA-C
1 CGAAACC
7563 CGAAACC
1 CGAAACC
*
7570 CTAAATCC
1 CGAAA-CC
7578 CG-AACC
1 CGAAACC
7584 CGAAACC
1 CGAAACC
*
7591 CTAAACC
1 CGAAACC
7598 CGAAACC
1 CGAAACC
*
7605 CGAACCC
1 CGAAACC
*
7612 CGAAAAC
1 CGAAACC
*
7619 CTAAACC
1 CGAAACC
7626 CGTAAACC
1 CG-AAACC
*
7634 CTAAACC
1 CGAAACC
*
7641 CTAAAACC
1 C-GAAACC
*
7649 CTTAAACC
1 C-GAAACC
*
7657 CTAAACC
1 CGAAACC
*
7664 CTTAAACC
1 C-GAAACC
7672 TC--AACC
1 -CGAAACC
*
7678 CTAAACC
1 CGAAACC
*
7685 CTAAACC
1 CGAAACC
**
7692 ATAAACC
1 CGAAACC
*
7699 CTAAACC
1 CGAAACC
*
7706 CTAAACC
1 CGAAACC
*
7713 CTAAAACC
1 C-GAAACC
* *
7721 CTCACACC
1 C-GAAACC
7729 CGAAACC
1 CGAAACC
* *
7736 CTAAACA
1 CGAAACC
*
7743 CTAAA-C
1 CGAAACC
*
7749 CTAAACC
1 CGAAACC
*
7756 CTAAACC
1 CGAAACC
* *
7763 CTAAA-A
1 CGAAACC
*
7769 CGCTAACC
1 CG-AAACC
*
7777 CTAAACC
1 CGAAACC
*
7784 CTAAACC
1 CGAAACC
*
7791 CTAAA-C
1 CGAAACC
*
7797 CTAAACC
1 CGAAACC
*
7804 CTAAA-C
1 CGAAACC
*
7810 C-TAACC
1 CGAAACC
*
7816 CTAAA-C
1 CGAAACC
7822 CGAAACC
1 CGAAACC
*
7829 CTAAACC
1 CGAAACC
7836 TAACCTAACC
Statistics
Matches: 6467, Mismatches: 570, Indels: 1560
0.75 0.07 0.18
Matches are distributed among these distances:
4 9 0.00
5 105 0.02
6 632 0.10
7 3125 0.48
8 1698 0.26
9 680 0.11
10 151 0.02
11 50 0.01
12 17 0.00
ACGTcount: A:0.40, C:0.41, G:0.14, T:0.05
Consensus pattern (7 bp):
CGAAACC
Found at i:2511 original size:68 final size:68
Alignment explanation
Indices: 334--7606 Score: 2375
Period size: 68 Copynumber: 108.9 Consensus size: 68
324 TCGAACCGAC
* * *
334 CCCGAAA-CCGAA-CCCGAAACCC-GAAACCC-GAAA-CCGGACACCCTG-AACCCGAATA-CCG
1 CCCGAAACCCGAAGACCGAAACCCGGAAACCCTGAAACCCCGAAACCC-GAAACCCGAA-ACCCG
392 CG-AAA
64 -GAAAA
* * *
397 CCCGAAATCCCGAA-ACCCGCAACCCGCAAACCC-G--ACACCGAAACCCTGAAA-CCGAAACCC
1 CCCGAAA-CCCGAAGA-CCGAAACCCGGAAACCCTGAAACCCCGAAACCC-GAAACCCGAAACCC
*
457 -GATAA
63 GGAAAA
* * *
462 CCCGAAACCCGCA-A-CGAAACCCCGGAAACCC-GAAACCCGGAAAACCCG-TA-CCGAAACCC-
1 CCCGAAACCCGAAGACCGAAA-CCCGGAAACCCTGAAACCCCG-AAACCCGAAACCCGAAACCCG
*
521 GAATA
64 GAAAA
*
526 CCCGAAA--CGAA-CCCGGAAACCC-GAAACCC-GAAA--CCGAAA--CG-AA-CCGAAACCC-G
1 CCCGAAACCCGAAGACC-GAAACCCGGAAACCCTGAAACCCCGAAACCCGAAACCCGAAACCCGG
*
579 -ACA
65 AAAA
*
582 CACGAAACCCGAA-ACCCG-AACCC-GAATACCCTGAAA-CCCGAAACCCGAAACCCGAAACCC-
1 CCCGAAACCCGAAGA-CCGAAACCCGGAA-ACCCTGAAACCCCGAAACCCGAAACCCGAAACCCG
642 G-AAA
64 GAAAA
** * * * *
646 CCCGAAAACCCGAACCCCGGAAACACGAAAACCC-GCAA-CCCGAAACCCGAAACCCGAAA-CCT
1 CCCG-AAACCCGAAGACC-GAAACCCGGAAACCCTGAAACCCCGAAACCCGAAACCCGAAACCCG
708 G-AAA
64 GAAAA
* * * *
712 -CCG-AACCCGAA-ACCG-AACCCGGAAACCATTCAATCCCCGAAACCCG-AA-TC----CCC-G
1 CCCGAAACCCGAAGACCGAAACCCGGAAACC-CTGAAACCCCGAAACCCGAAACCCGAAACCCGG
766 -AAA
65 AAAA
* *
769 CCCGAAACCCGAA-ACCTAAACCCGAAAACCC-GATAA-CCCGAAACCCGTAAACCCGAAACCC-
1 CCCGAAACCCGAAGACCGAAACCCGGAAACCCTGA-AACCCCGAAACCCG-AAACCCGAAACCCG
*
830 GATAA
64 GAAAA
* *
835 CCCGAAACCCGACACG-CCG-AACCC-GAAA-CC-GAAACCCCG-AACCTG-CACCCGAATACCC
1 CCCGAAACCCGA-A-GACCGAAACCCGGAAACCCTGAAACCCCGAAACCCGAAACCCGAA-ACCC
893 GG-AAA
63 GGAAAA
* *
898 CCCGAAACCCG-A-A---AAACCCTGAAACCC-GATAACCCTGAAGACCCGAAACCCGAAACCCG
1 CCCGAAACCCGAAGACCGAAACCCGGAAACCCTGA-AACCCCGAA-ACCCGAAACCCGAAACCCG
* *
957 GATAT
64 GAAAA
* * * *
962 CCCGAAA-ACGAAATACCCGAAAACCCGCGAAACCCGGAAATCCCGAAACCCGAAAAACCCGAAA
1 CCCGAAACCCG-AAGA-CCG-AAACCCG-GAAACCCTGAAACCCCGAAACCCG--AAACCCGAAA
1026 CCC-G-AAA
60 CCCGGAAAA
* * * *
1033 CCCGAAACCCGAAAACCCGTAAACCC-GAAACCC-GAAAACCCGAAACATCCGAATATCCAGAAC
1 CCCGAAACCCGAAGA-CCG-AAACCCGGAAACCCTGAAACCCCGAAAC--CCGAA-A-CCCGAAA
1096 CTCCGG-AAA
60 C-CCGGAAAA
* * *
1105 CCCGACACCCCGAA-ACCCGAGAAACCCGAAAACCCTGAAAACCCGGAAACCCGAAACCCTGAAA
1 CCCGA-AACCCGAAGA-CC--GAAACCCGGAAACCCTG-AAACCCCGAAACCCGAAACCC-GAAA
* *
1169 CCC-TAATA
60 CCCGGAAAA
*
1177 CCCGAAACCCG-A-ACCGAAA-CC-GAAACCC-GAATA-CCCGACAACCCGAAACTCCGCAA-CC
1 CCCGAAACCCGAAGACCGAAACCCGGAAACCCTGAA-ACCCCGA-AACCCGAAAC-CCGAAACCC
*
1235 -GAACA
63 GGAAAA
* *
1240 CCCGAAACCCGAA-ACCCGAAACCCGGAAACCAAT-AAA-CCCGATAACCCTAATACCCGAATAC
1 CCCGAAACCCGAAGA-CCGAAACCCGGAAACC-CTGAAACCCCGA-AACCCGAA-ACCCGAA-AC
1302 CC-G-AAA
61 CCGGAAAA
* * * *
1308 CCCGCAACCAGAAAACCCGAAACCC-GAAACCC-GAAA-ACCGAAACCCGAAACCCGAAGAAACC
1 CCCGAAACCCGAAGA-CCGAAACCCGGAAACCCTGAAACCCCGAAACCCGAAACCC---GAAACC
*
1370 CGGAACA
62 CGGAAAA
* * **
1377 CCTCGAAACCCCGCAA-CCCGAAA-CCAGAAACCAGGAAA-CCCGAAACCCGAAACCCGAAACCC
1 CC-CGAAA-CCCG-AAGACCGAAACCCGGAAACCCTGAAACCCCGAAACCCGAAACCCGAAACCC
*
1439 TGGAAAC
63 -GGAAAA
* *
1446 CCCGGAAACCCGAA-CCCGAACACCC-GAAACCC-G-AACCCCGAAACCCGCAACCCGAAACCC-
1 CCC-GAAACCCGAAGACCGAA-ACCCGGAAACCCTGAAACCCCGAAACCCGAAACCCGAAACCCG
1506 G-AAA
64 GAAAA
*
1510 CCCGAAACCCGAA-ATCCCGAAACCCCGAAACCC-GAAA-CCCGAAACCCCGAAAACCCGAAACC
1 CCCGAAACCCGAAGA--CCGAAACCCGGAAACCCTGAAACCCCGAAA-CCCG-AAACCCGAAACC
1572 C-GAAAA
62 CGGAAAA
* * *
1578 CTCCGACACCCAAAACCTCGACACCGAAA-CCGGAAACCCGGAAA--CCGTAAACCCGAAAACCC
1 C-CCGAAACCC-GAA----G--ACCGAAACCCGGAAACCCTGAAACCCCG-AAACCCG-AAACCC
1640 GAAACCC-G-AAA
56 GAAACCCGGAAAA
* * * * *
1651 GCCGAAACCCGAATACCCGAATCCCCGGAAACCC-G-AACCCGGAAACCCGAAAACCCGCAACCC
1 CCCGAAACCCGAAGA-CCGAA-ACCCGGAAACCCTGAAACCCCGAAACCCG-AAACCCGAAACCC
1714 -G-AAA
63 GGAAAA
* *
1718 CCCGAAAACCCGCAAAACCCGAAACCCGTAAACCC-GAAA-CCCGAAACCCGAAAACCCGAAAAC
1 CCCG-AAACCCG-AAGA-CCGAAACCCGGAAACCCTGAAACCCCGAAACCCG-AAACCCG-AAAC
1781 CC-GAAAA
61 CCGGAAAA
* * * * *
1788 -CCGAATACCCTGAAAACCCG-AACCTCCGAATACCTTCGAAAACTCCGGAAACCCCTAATACCC
1 CCCGAA-ACCC-GAAGA-CCGAAACC-CGGAA-ACCCT-G-AAAC-CCCGAAA-CCCGAA-ACCC
1851 GAAAACCC-G-AAA
56 G-AAACCCGGAAAA
* *
1863 CCCGTAAACCCCGGAAAACCCGAAACCC-GAAACCC-GAAATACCCGAAACCCCGAAACCCGAAA
1 CCCG-AAA-CCC-GAAGA-CCGAAACCCGGAAACCCTGAAA-CCCCGAAA-CCCGAAACCCGAAA
1926 --C-G-AAA
60 CCCGGAAAA
* * * * * *
1931 CCCGAAACCAGAA-ACCCGCAACCCGCATACCC-GAAA-CCCGCACCCCGAATA--CGAAACCC-
1 CCCGAAACCCGAAGA-CCGAAACCCGGAAACCCTGAAACCCCGAAACCCGAA-ACCCGAAACCCG
1990 G-AAA
64 GAAAA
*** * * *
1994 CCCGAAACCCGCATCCCCGAAACCC-GAAACGCT-ATAA-CCCTAAACCCGAAAACCCTAAACCC
1 CCCGAAACCCG-AAGACCGAAACCCGGAAACCCTGA-AACCCCGAAACCCG-AAACCCGAAACCC
*
2056 TGTAGAAA
63 -GGA-AAA
* * ** *
2064 CCCGACACCCGAAAACCCGAAACCC-G-AACCC-GAAACGCCTTAAACCTCGAAACCTGAAACCC
1 CCCGAAACCCGAAGA-CCGAAACCCGGAAACCCTGAAAC-CCCGAAACC-CGAAACCCGAAACCC
*
2126 TG-AAA
63 GGAAAA
* *
2131 CCCGAAACCCGAA-ACCCGAGAACCC-GACACCC-GAATA-CCCGAAACCCGACAA-AC-AAACC
1 CCCGAAACCCGAAGA-CCGA-AACCCGGAAACCCTGAA-ACCCCGAAACCCGA-AACCCGAAACC
*
2190 CGGAAAC
62 CGGAAAA
* * *
2197 CCCGAAACTCCGTAA-ACCCGTAAA----AAAACCTCCGAATACCCCG-AA-CCGTAACCCCGAA
1 CCCGAAAC-CCG-AAGA-CCG-AAACCCGGAAACC-CTGAA-ACCCCGAAACCCG-AAACCCGAA
*
2255 ACCCGGAATA
59 ACCCGGAAAA
*
2265 CCCGGAAACCCGGGAA-ACCCGTAAATACCC--CAACCC-GAAA-CCCGAAACCCGAAACCCTTG
1 CCC-GAAACCC--GAAGA-CCG--AA-ACCCGGAAACCCTGAAACCCCGAAACCCGAAACCC--G
*
2325 -AA-CC-GTAAA
57 AAACCCGGAAAA
*
2334 CCCTGAAACCCGAA-ATCCCGACACCTC-GAAACCC-GAAA-CCCGAAACCCGTGAAACCCGAAA
1 CCC-GAAACCCGAAGA--CCGAAACC-CGGAAACCCTGAAACCCCGAAACCC--GAAACCCGAAA
* *
2395 CCCCG-ACA
60 CCCGGAAAA
* * * * *
2403 CCCGAAAACCCGAA-ACCCGAAGA-CC-GAAACCCGGGAAACCCTTGAACCCCGAACCCCGACAC
1 CCCG-AAACCCGAAGA-CCGAA-ACCCGGAAACCC-TGAAACCC-CGAAACCCGAAACCCGAAAC
2465 CC-G-AAA
61 CCGGAAAA
* *
2471 CCCGGAAAACCCGAA-CCCG-AACCC-GAATATCCC-GACAACCCTGAAATCCCGAAACCCGAAA
1 CCC-G-AAACCCGAAGACCGAAACCCGGAA-A-CCCTGA-AACCCCGAAA-CCCGAAACCCGAAA
2532 CCC-GAAAA
60 CCCGGAAAA
** * *
2540 CCCGATGAAACCTCGAACCCCGAAAGACCC-G-AACCCTG-AATCCCGTAACCCCGATAA-CCGA
1 CCC---GAAACC-CGAAGACCG-AA-ACCCGGAAACCCTGAAACCCCG-AAACCCGA-AACCCGA
*
2601 AACCC-GATAAT
58 AACCCGGA-AAA
* *
2612 CCGGAAACCCGAA-ACTCGAAAAAAGCCC-GAAACTCCTGGAA-CCCGAAACCCG-AACCCGAAA
1 CCCGAAACCCGAAGAC-CG---AAA-CCCGGAAAC-CCTGAAACCCCGAAACCCGAAACCCGAAA
*
2673 CCTCGAAACCTCGAA
60 CC-CGGAA-----AA
* *
2688 CCAGAAAACCCGAA-ACCCGAAACCCGGACAACCC-GAATA-CCCGAAACCCGATACCCGAAACC
1 CCCG-AAACCCGAAGA-CCGAAACCCGGA-AACCCTGAA-ACCCCGAAACCCGAAACCCGAAACC
2750 C-G--AA
62 CGGAAAA
* * * * *
2754 -CCGAAACCCGCA-ACCGAAACCCGGAAACCC-G-CAGCCCGAAACCCGCAACCCGAATCCC-G-
1 CCCGAAACCCGAAGACCGAAACCCGGAAACCCTGAAACCCCGAAACCCGAAACCCGAAACCCGGA
2813 AAA
66 AAA
* **
2816 CCCTGAAACCCGTGAA-ACCCGATAA-CC--AAACCC-GAAAACCCGAAACCCGGCCACCCGGAA
1 CCC-GAAACCC--GAAGA-CCGA-AACCCGGAAACCCTGAAACCCCGAAACCC-GAAACCC-GAA
2876 A-CC-G--AA
59 ACCCGGAAAA
* * *
2882 -CCGAAACCCTTGAA-ACCCGAAACCCTGAATAACCCCGAAA-CCCGAAACCCGAAACCCGTAAC
1 CCCGAAACCC--GAAGA-CCGAAACCC-GGA-AACCCTGAAACCCCGAAACCCGAAACCCGAAAC
2944 CC-GAACAA
61 CCGGAA-AA
* * *
2952 CTCGAAACTCCGAA-ACCCGCGAACCCCGAAACCC-GAAA-CCCGAAAACCCG-AACCCGAAACC
1 CCCGAAAC-CCGAAGA-CCG-AAACCCGGAAACCCTGAAACCCCG-AAACCCGAAACCCGAAACC
*
3013 CCG-AAA
62 CGGAAAA
* *
3019 CTCCGAACACCCGGAA-ACCCGCAACCC-GAAA-CC-GAAACCTCGAAACCCGAAACCCGAAACC
1 C-CCGAA-ACCC-GAAGA-CCGAAACCCGGAAACCCTGAAACCCCGAAACCCGAAACCCGAAACC
3080 C-G-AAA
62 CGGAAAA
* * * *
3085 CCCGAAACCCGAA-ACCCGAAACCC-GAAACCCCGGAAACCCGGACAAACCCCGGAAAACCGACA
1 CCCGAAACCCGAAGA-CCGAAACCCGGAAA-CCCTGAAACCCCG--AAA-CCC-GAAACCCGAAA
*
3148 CCCTGAAAA
60 CCCGGAAAA
* *
3157 CCCGAAACCCGAA-ACCTGAAAACCCGGAAACCC-G-CACCCCG-AA----AAACCCGACACCC-
1 CCCGAAACCCGAAGACC-G-AAACCCGGAAACCCTGAAACCCCGAAACCCGAAACCCGAAACCCG
3213 G-AAA
64 GAAAA
* * * *
3217 -CCGCAACCCGCCATACCCGAAACCCTGGAAACTCCCGAAA-CCCGAAACCCGAAAACCCGAAAC
1 CCCGAAACCCG-AAGA-CCGAAACCC-GGAAAC-CCTGAAACCCCGAAACCCG-AAACCCGAAAC
3280 CC-G-AAA
61 CCGGAAAA
*
3286 CCCGATAACCCGAA-ACCGTAAACCCGAAAACCCT-AAA-CCCGAAACTGCGCGAAACCCGAAAC
1 CCCGA-AACCCGAAGACCG-AAACCCGGAAACCCTGAAACCCCGAAAC--C-CGAAACCCGAAAC
*
3348 CC-GAAGCA
61 CCGGAA-AA
* *
3356 CCCGAAACCCGAA-ACCCGAAACCC-GAAACCCGGGAAA--CCGAAACCCGCAACCCGCTAATAT
1 CCCGAAACCCGAAGA-CCGAAACCCGGAAACCC-TGAAACCCCGAAACCCGAAACCCG--AA-A-
3417 CCC-G-AAA
60 CCCGGAAAA
*
3424 CCCGATACACCCGAA-ACCCG-AACCTC-GAAACCC-GAAAAAACCCGAAACCCCGACAACCCGG
1 CCCGA-A-ACCCGAAGA-CCGAAACC-CGGAAACCCTG--AAACCCCGAAA-CCCGA-AACCC-G
3485 AAAACCTC-GAAATA
57 -AAACC-CGGAAA-A
*** *
3499 CCCCGAAACCCGAA-ACCG-AACCCGGAACACCCAT-AAACCGTAAAACCCGAACCCCGAAACCC
1 -CCCGAAACCCGAAGACCGAAACCCGGAA-ACCC-TGAAACCCCGAAACCCGAAACCCGAAACCC
3561 -G-AAA
63 GGAAAA
* * *
3565 CCCG-AACCCTCAA-ACCGAAACCC-GAAA-CC-GATAATCCCG-AACCCGGAAACCCGGAATCC
1 CCCGAAACCC-GAAGACCGAAACCCGGAAACCCTGA-AACCCCGAAACCC-GAAACCC-GAAACC
**
3624 C-CTAAA
62 CGGAAAA
* * * * *
3630 -CCGAAACCAGAA-ATCCCGAAACCCGAAAACCCGCAACGAAGACTCCGAAA-CCGCAACCCGAA
1 CCCGAAACCCGAAGA--CCGAAACCCGGAAA-CC-C--TGAA-ACCCCGAAACCCGAAACCCGAA
3692 ACCC-G-AAA
59 ACCCGGAAAA
*
3700 CCCG-AACCCGAAAACCCGAAACCC-GAAACCC-GAAA-CCCGAAACCCCCGAAACCC-AAACCC
1 CCCGAAACCCGAAGA-CCGAAACCCGGAAACCCTGAAACCCCGAAA--CCCGAAACCCGAAACCC
3760 -G-AAA
63 GGAAAA
* **
3764 CCAGAAACCCCTGAA-ACCCGAAACCC-GAAA--C-GAAA-CCCGAAACCCTCAACCCGAATACC
1 CCCGAAA-CCC-GAAGA-CCGAAACCCGGAAACCCTGAAACCCCGAAACCCGAAACCCGAA-ACC
*
3823 C-GAAAC
62 CGGAAAA
* **
3829 CCCGAAAACCCGCACTCCGGAAA-CCGCGAAACCC-GAAA-CCCGAAACCCGAAACCCGAAACCC
1 CCCG-AAACCCGAAGACC-GAAACCCG-GAAACCCTGAAACCCCGAAACCCGAAACCCGAAACCC
3891 -GAAAA
63 GGAAAA
* *
3896 CCCGAAACCCGAA-ACCGAAATCCC-GAAACTCC-GAAACTCCGCAACCCGAAACCCGAAACCC-
1 CCCGAAACCCGAAGACCGAAA-CCCGGAAAC-CCTGAAACCCCGAAACCCGAAACCCGAAACCCG
3957 G-AAA
64 GAAAA
* * *
3961 -CCTAAA-CCGAATACCCGAAACCC-G-AA-CCT-AAA-CCCGAAAACCCGAAA--CGAAACCCT
1 CCCGAAACCCGAAGA-CCGAAACCCGGAAACCCTGAAACCCCG-AAACCCGAAACCCGAAACCCG
4017 GAAAA
64 GAAAA
* *
4022 CCCGAAACCCCGAA-ATCCGGAAAACCC-G-CACCC-GAAA-CCCGAAACCCGAAA-CCTAAACC
1 CCCGAAA-CCCGAAGA-CC-G-AAACCCGGAAACCCTGAAACCCCGAAACCCGAAACCCGAAACC
4081 C-G-AAA
62 CGGAAAA
* * *
4086 CCCGAAACCCGAAAACCCGATACTCC-GAAACCC-GACA-CCCGAAGACCCGAAA-CCGAAACCC
1 CCCGAAACCCGAAGA-CCGAAAC-CCGGAAACCCTGAAACCCCGAA-ACCCGAAACCCGAAACCC
4147 -G-AAA
63 GGAAAA
*
4151 CCCGTAAACCCCGATAAACCCTGAAACCC-GAAACCC-GAAA-CCCGAAA-CCGAAAACCCGAAA
1 CCCG-AAA-CCCGA-AGA-CC-GAAACCCGGAAACCCTGAAACCCCGAAACCCG-AAACCCGAAA
* *
4212 GCCC-TAATA
60 -CCCGGAAAA
* *
4221 -CCGAAACCCGAA-ACCCGAAACCCGGAAACCC-GAAAACCC-TAACCCGAAACCCGAAACCTAA
1 CCCGAAACCCGAAGA-CCGAAACCCGGAAACCCTGAAACCCCGAAACCCGAAACCCGAAACC---
*
4282 CTCG-AAA
62 C-GGAAAA
* * * * * * *
4289 CTTCCGACACCCGAACACCTAAACCCGCACACCC-GAAAACCCGAAACCCGAAACCCTAACACCC
1 C--CCGAAACCCGAAGACCGAAACCCGGAAACCCTGAAACCCCGAAACCCGAAACCCGAA-ACCC
*
4353 -G-AAC
63 GGAAAA
** *
4357 CCCGCTAAACCCGAACTCTCCGACAACCC-GAAACCC-GAACCGAACCCCGCAAACCCGGACACC
1 CCCG--AAACCCGAA--GACCGA-AACCCGGAAACCCTG-A---AACCCCG-AAACCC-GAAACC
*
4420 AGAAA-CC-G--AA
55 CGAAACCCGGAAAA
* * * * *
4430 CCCGAAACCCGAA-CCCTAAACCCGAAAACCCGGACA-CCCGAAATACCCGAATATCCCGAAACC
1 CCCGAAACCCGAAGACCGAAACCCGGAAACCCTGAAACCCCG-AA-ACCCGAA-A-CCCGAAACC
*
4493 C-G-AAC
62 CGGAAAA
* * * * *
4498 CCCGAAAACCGGAA-ACCCGACACCC-GACACCCTGAACCCCCGAAACCCGACACCCGAAACCC-
1 CCCG-AAACCCGAAGA-CCGAAACCCGGAAACCCTGAAACCCCGAAACCCGAAACCCGAAACCCG
4560 G-AAA
64 GAAAA
* * * * *
4564 -CCGACACCCGAAAACCCGAAA-CC-GACACACTGAAACCCTCGGAAACCCGAAACACGAATACC
1 CCCGAAACCCGAAGA-CCGAAACCCGGAAACCCTGAAACCC-C-GAAACCCGAAACCCGAA-A-C
* *
4626 CCGTATAA
61 CCGGAAAA
* * * *
4634 CCTGATACCCGAA-ACCCG--ACCCCGAAACCC-GAAA-CCCG-AACCCGAAACCCG-AACCCCG
1 CCCGAAACCCGAAGA-CCGAAACCCGGAAACCCTGAAACCCCGAAACCCGAAACCCGAAACCCGG
*
4692 TAAA
65 AAAA
* * *
4696 CCCGACA-CCGAA-ACC-AAACCCCGAAACCC-GAAA-CCCGAAAACCCGAACCCCGAAACCC-G
1 CCCGAAACCCGAAGACCGAAACCCGGAAACCCTGAAACCCCG-AAACCCGAAACCCGAAACCCGG
*
4755 -AAC
65 AAAA
* * * *
4758 CCCGAATAACCCCG-A-ACCGAAACCCGGGAACCCCGAAAACCCGAAACCCGTAAACCCTAAAAA
1 CCCG-A-AA-CCCGAAGACCGAAACCCGGAAACCCTGAAACCCCGAAACCCG-AAACCC--GAAA
*
4821 CCCTG-AAA
60 CCCGGAAAA
* * *
4829 CCCGAATCCCAGAA-ACCCAAAACCC-GAAACCC-GATAAACCCGAAACCCGAAAACCCGAAACC
1 CCCGAAACCC-GAAGA-CCGAAACCCGGAAACCCTGA-AACCCCGAAACCCG-AAACCCGAAACC
4891 C-G-AAA
62 CGGAAAA
* *
4896 CCCGAAACCCGAAAACCCCGAAACCC-G-AACCCGGTAAA-CCCGAAACCCGAAACCCGAAACCC
1 CCCGAAACCCGAAGA--CCGAAACCCGGAAACCCTG-AAACCCCGAAACCCGAAACCCGAAACCC
* * *
4958 GCATAT
63 GGAAAA
*
4964 CCCGAAACCCGAA-ACCCCG-AACCCGGAAACCC-GAAACCCGGAAA-CCGAATACCCGAAACCC
1 CCCGAAACCCGAAGA--CCGAAACCCGGAAACCCTGAAACCCCGAAACCCGAA-ACCCGAAACCC
*
5025 -G-ACA
63 GGAAAA
* * * *
5029 CCCG-AA----AACACTGAAACCC-GAAACCC-GAAA-CCCGCAACCCGGAAACCCTAAACCC-G
1 CCCGAAACCCGAAGACCGAAACCCGGAAACCCTGAAACCCCGAAACCC-GAAACCCGAAACCCGG
5085 --AA
65 AAAA
* *
5087 CCCGAAACCCGACA-CCCGAACACCC-GAAACCC-GAAACTCCCGAAACCCGAAA-CCGGAACCC
1 CCCGAAACCCGA-AGACCGAA-ACCCGGAAACCCTGAAAC-CCCGAAACCCGAAACCCGAAACCC
***
5148 GGTCTCA
63 GG-AAAA
* * *
5155 CCCGAAAATCCCGAA-ACCGAAACCC-G-AA-CTTCGAAATACCCGACACCCGAAACCCGAAACC
1 CCCG-AAA-CCCGAAGACCGAAACCCGGAAACCCT-GAAA-CCCCGAAACCCGAAACCCGAAACC
*
5216 CCGAAAA
62 CGGAAAA
*
5223 CCCGAAACCCGAA-ATCCGACACCC-GAAACCCTG-AACCCCGAAACCCGGAAATCCCGGAAACC
1 CCCGAAACCCGAAGA-CCGAAACCCGGAAACCCTGAAACCCCGAAACCC-GAAA-CCC-GAAACC
*
5285 C---CAA
62 CGGAAAA
* * *
5289 CCCGAAATACCCGAA-ACCCGAAACCCTGAAACCC-GAAACCCCAAAACCCCGACACCCGAAACC
1 CCCG-AA-ACCCGAAGA-CCGAAACCCGGAAACCCTGAAACCCCGAAA-CCCGAAACCCGAAACC
5352 C-GAAAA
62 CGGAAAA
5358 CCCG-AACCCGAA-ACTCCGAAACCC-G-AACCC-GAAA--CCGAAACCCGAAACCCGAAA-CC-
1 CCCGAAACCCGAAGA--CCGAAACCCGGAAACCCTGAAACCCCGAAACCCGAAACCCGAAACCCG
5414 G-AAA
64 GAAAA
*
5418 CCCGGAACCCGAA-ACCCGAAA-CCGCG-AACCCTGTAAA-CCCGAAACCCG-AA-CCGAAACCC
1 CCCGAAACCCGAAGA-CCGAAACCCG-GAAACCCTG-AAACCCCGAAACCCGAAACCCGAAACCC
5477 -G-AAA
63 GGAAAA
* * * * * **
5481 CCCGATAACCTC---G-CAGAAACCCTG-AACCCGGCAA--CCGACA-CCGAAACCAAAAACCCG
1 CCCGA-AACC-CGAAGACCGAAACCCGGAAACCCTGAAACCCCGAAACCCGAAACCCGAAACCCG
5538 G-AAA
64 GAAAA
* * *
5542 CCCGAAACCCGAA-ACCCGAAATCCC-GAAAACCAGATAAAACCCGAAACCCG-AACCCGAAATA
1 CCCGAAACCCGAAGA-CCGAAA-CCCGGAAACCCTG--AAACCCCGAAACCCGAAACCCG-AA-A
5604 CCCGG--AA
60 CCCGGAAAA
* *
5611 CCCTAAACCCGCAA-ACTCCGAAACCC-GCAACCC-GAAA-CCCGAAACCTCGAAACCCGAAACC
1 CCCGAAACCCG-AAGA--CCGAAACCCGGAAACCCTGAAACCCCGAAACC-CGAAACCCGAAACC
*
5672 CTG-AAA
62 CGGAAAA
* *
5678 CCCGGAAATCCCGAAAACCGACACCC-GAACACCC-GAAA-CCCGAAACCCGAAACCCGAAACCC
1 CCC-GAAA-CCCGAAGACCGAAACCCGGAA-ACCCTGAAACCCCGAAACCCGAAACCCGAAACCC
5740 -G--AA
63 GGAAAA
* *
5743 -CCTAAACCCGGAA-ACCGTAAACCC-GAAACCC-GAAA-CCCG-CACCC-AAACCCGAAACCC-
1 CCCGAAACCC-GAAGACCG-AAACCCGGAAACCCTGAAACCCCGAAACCCGAAACCCGAAACCCG
*
5800 GAAAC
64 GAAAA
* * *
5805 CTCCGAAACCC-AA-ACCCGTAACCCGATAAACCC-GAAACCCTGAAACCCGGTAAACTCCG-AA
1 C-CCGAAACCCGAAGA-CCGAAACCCG-GAAACCCTGAAACCCCGAAACCC-G-AAAC-CCGAAA
5866 CCC-GAATAA
60 CCCGGAA-AA
* * * *
5875 ACC-AAACCCGAA-ACCCGAAACCCTG-AACCCGGAAA-CTCGAAAACCCGAAACCGCGAAACCC
1 CCCGAAACCCGAAGA-CCGAAACCCGGAAACCCTGAAACCCCG-AAACCCGAAACC-CGAAACCC
*
5936 TGTAATAAA
63 -G-GA-AAA
* *
5945 CCCGAAACCCGAA-ACCGAAACCGAGACACGAAAACTCC-GAAAACCCGAAAAACCCGAAACCCG
1 CCCGAAACCCGAAGACCGAAA-C----C-CGGAAAC-CCTGAAACCCCG--AAACCCGAAACCCG
6008 -AACCC-GAAAA
57 AAACCCGGAAAA
*
6018 CCCGAAACCCGAA-ATCCCGAAACCC-GAAACCC-GAAA--CCGCAACCCGAAATCCCCGAAACC
1 CCCGAAACCCGAAGA--CCGAAACCCGGAAACCCTGAAACCCCGAAACCCGAAA--CCCGAAACC
* *
6078 C-TATAA
62 CGGAAAA
*
6084 CCCGAAACCCG-A-CCTCGAAACCC-GAAACCC-GATAA-CCCGAAAAACCCGAAACCCGAAACT
1 CCCGAAACCCGAAGAC-CGAAACCCGGAAACCCTGA-AACCCCG--AAACCCGAAACCCGAAAC-
6144 CC-G-AAA
61 CCGGAAAA
* * * * *
6150 CCTCTAAACCCGAA-ACCCGCAACCC-G-AACTCCGGAATCCCCGAAAACCCTAAACCCGAAA--
1 CC-CGAAACCCGAAGA-CCGAAACCCGGAAAC-CCTGAAACCCCG-AAACCCGAAACCCGAAACC
*
6210 CGCAACCCGAA
62 CGGAA----AA
** * *
6221 CCCGAAACCCG-A-ACCGTAAAAATCCC-TCAACCC-GCAACCCTGGAAACCCGAAACCC-AAAC
1 CCCGAAACCCGAAGACCG---AAA-CCCGGAAACCCTGAAACCC-CGAAACCCGAAACCCGAAAC
*
6281 CCGTAAAA
61 CCGGAAAA
* * * * * *
6289 -CCG-CACCCGTAAAACCCGCAA-CC-GAAACCC-G-CATCCCG-AACCACGACA-CCGAAACCC
1 CCCGAAACCCG-AAGA-CCGAAACCCGGAAACCCTGAAACCCCGAAACC-CGAAACCCGAAACCC
6346 -G-AAA
63 GGAAAA
**
6350 CCCG-AACCCTG-ACCCCGAATA-CC-GAAATCTCCGTAGAAA-CCCGATAACCCGAAACCCGAA
1 CCCGAAACCC-GAAGACCGAA-ACCCGGAAA-C-CC-T-GAAACCCCGA-AACCCGAAACCCGAA
*
6410 ACCC-G-AAC
59 ACCCGGAAAA
* * * * *
6418 CCCGCAACCCGGAA-ACCCGCAACCCGAGAAACCC-GAAACCCGAGAAAACCGAAAACCGAAACC
1 CCCGAAACCC-GAAGA-CCGAAACCCG-GAAACCCTGAAACCC-CGAAACCCGAAACCCGAAACC
6481 C-G-AAA
62 CGGAAAA
6486 CCCGAAA-CCGAAGAAACCGAAACCC-GAAACCC-GCAAACCTCCG-AACCCGAAAACCCGAAA-
1 CCCGAAACCCGAAG--ACCGAAACCCGGAAACCCTG-AAACC-CCGAAACCCG-AAACCCGAAAC
*
6546 CCAG-AAA
61 CCGGAAAA
* * * *
6553 -CCGAAACTCC-AA-CCCGGGAAACCCTGAAACACCCGAAA--CCGACACCCGAAACCCGAAACC
1 CCCGAAAC-CCGAAGACC--GAAACCCGGAAAC-CCTGAAACCCCGAAACCCGAAACCCGAAACC
**
6613 C-CTAAA
62 CGGAAAA
*
6619 CCCGAAACCCGAAAACTCCGAAACCC-GAAACCGACCTGAAACCCGCGAAACCCGAAACCCGAAA
1 CCCGAAACCCGAAGA--CCGAAACCCGGAAA-C--CCTGAAACCC-CGAAACCCGAAACCCGAAA
6683 CCC-G-AAA
60 CCCGGAAAA
* * *
6690 -CCGAATACCCGAA-ACCCGAAACCC-GCAA-CC-GCAACCCGGAAACCCGAAACCC-AAACCC-
1 CCCGAA-ACCCGAAGA-CCGAAACCCGGAAACCCTGAAACCCCGAAACCCGAAACCCGAAACCCG
6748 G-AAA
64 GAAAA
* * ***
6752 CCCTAAACCCGAA-ACCCGAAACCC-GAAAACC-GAAACCGAAAAACCCGAAACCC-ATAACCC-
1 CCCGAAACCCGAAGA-CCGAAACCCGGAAACCCTGAAACCCCGAAACCCGAAACCCGA-AACCCG
6812 G-AAA
64 GAAAA
* * *
6816 CCCTGAAACCCGAA-ACGGAAACCTC-GAAACCCGGAAA-TCCGAAAACCCGAAACCCGAAACCC
1 CCC-GAAACCCGAAGACCGAAACC-CGGAAACCCTGAAACCCCG-AAACCCGAAACCCGAAACCC
6878 -G-AAA
63 GGAAAA
* * *
6882 CCCGAAACCTG--GA-C---ACCCGAGAAACCC-GAAACCGCGCAAGCCCGTAAACCCGAAACCC
1 CCCGAAACCCGAAGACCGAAACCCG-GAAACCCTGAAACCCCG-AAACCCG-AAACCCGAAACCC
6940 -G-AAA
63 GGAAAA
* * * * * *
6944 CCCGGAAACCCGAATAAACCCGATCTACCCGTAAACCCT-AAA-CCCGCACCCCGAAACCCTAAA
1 CCC-GAAACCCG-A-AGA-CCGA--AACCCGGAAACCCTGAAACCCCGAAACCCGAAACCCGAAA
7007 CCC-G-AAA
60 CCCGGAAAA
* **
7014 CCCGAAA-CCGAA-ACCCGAAACACGGAAACCC-GAATAATCCGAAACCTCGAAACCCGAAACCC
1 CCCGAAACCCGAAGA-CCGAAACCCGGAAACCCTGAA-ACCCCGAAACC-CGAAACCCGAAACCC
*
7076 CG-AAA
63 GGAAAA
* *
7081 CCCGAAACCCGAAAACCCGTTGAAACCC-GAAACCC-GATAACCCCCAAACCCGGTTTAAATCCC
1 CCCGAAACCCGAAGA-CC---GAAACCCGGAAACCCTGA-AACCCCGAAACCC-G---AAA-CCC
*
7144 GCAACCC-G-AAA
56 GAAACCCGGAAAA
* * * *
7155 CCC-AAACCCGGAA-CCCTGAAACCC-GAAACCC-GCAA--CCGAAA-CTG-AACCCGAAA-CCT
1 CCCGAAACCC-GAAGACC-GAAACCCGGAAACCCTGAAACCCCGAAACCCGAAACCCGAAACCCG
* *
7211 GATAC
64 GAAAA
* * * * *
7216 CCCGAAACCCGAGAAACCCGAAACCC-GATAACCC-GACA-CCCGAAACCCGCAACTACGAATCC
1 CCCGAAACCCGA-AGA-CCGAAACCCGGA-AACCCTGAAACCCCGAAACCCGAAAC-CCGAAACC
*
7278 C-GAAAT
62 CGGAAAA
*
7284 CCCGAAAACCCGGAA-ACAGAAA-CC-G-AACCC-GAAA-CCCGAAACCCGAAAACCGCG-AACC
1 CCCG-AAACCC-GAAGACCGAAACCCGGAAACCCTGAAACCCCGAAACCCG-AAACC-CGAAACC
*
7342 C-GAAAC
62 CGGAAAA
* *
7348 CCCGAAACCC-AA-CCCTTAAACCC-GAAACCC-GAAA-CCCGACAACCCGAAACCCGAAAACAC
1 CCCGAAACCCGAAGACC-GAAACCCGGAAACCCTGAAACCCCGA-AACCCGAAACCCG-AAAC-C
*
7408 CCG-AAA
62 CGGAAAA
* *
7414 CCCTACAACCCGAA-ACCCG-AACCC-G-AACCCTGGGAAA-CCCGAAACCCGAATCCCCGCAAA
1 CCCGA-AACCCGAAGA-CCGAAACCCGGAAACCCT--GAAACCCCGAAACCCGAA-ACCCG-AAA
* *
7474 CCCTG-ACA
60 CCCGGAAAA
* * *
7482 CCCTAAACCACGAA-ACCTAAACCCGCAAACCC-GAAA-CCCGAAACCCTGAAACCCGAAACCC-
1 CCCGAAACC-CGAAGACCGAAACCCGGAAACCCTGAAACCCCGAAACCC-GAAACCCGAAACCCG
*
7543 GACAA
64 GAAAA
* * * *
7548 CCCTAAACCCTAA-ACCGAAACCC-TAAATCCC-G-AA-CCCGAAACCCTAAACCCGAAACCCG
1 CCCGAAACCCGAAGACCGAAACCCGGAAA-CCCTGAAACCCCGAAACCCGAAACCCGAAACCCG
7607 AACCCCGAAA
Statistics
Matches: 5837, Mismatches: 605, Indels: 1535
0.73 0.08 0.19
Matches are distributed among these distances:
56 8 0.00
57 25 0.00
58 44 0.01
59 83 0.01
60 120 0.02
61 170 0.03
62 232 0.04
63 380 0.07
64 511 0.09
65 431 0.07
66 622 0.11
67 613 0.11
68 748 0.13
69 506 0.09
70 391 0.07
71 311 0.05
72 197 0.03
73 137 0.02
74 121 0.02
75 72 0.01
76 50 0.01
77 40 0.01
78 12 0.00
79 13 0.00
ACGTcount: A:0.40, C:0.41, G:0.14, T:0.04
Consensus pattern (68 bp):
CCCGAAACCCGAAGACCGAAACCCGGAAACCCTGAAACCCCGAAACCCGAAACCCGAAACCCGGA
AAA
Found at i:7423 original size:25 final size:25
Alignment explanation
Indices: 7310--7428 Score: 94
Period size: 22 Copynumber: 4.9 Consensus size: 25
7300 CAGAAACCGA
7310 ACCCGA-AACCCGAAACCCGAAAAC
1 ACCCGACAACCCGAAACCCGAAAAC
* *
7334 -CGCG--AACCCGAAACCCCGAAACCC
1 ACCCGACAACCCGAAA-CCCGAAA-AC
*
7358 AACCCTTA-AACCCGAAACCCG--AA-
1 -ACCC-GACAACCCGAAACCCGAAAAC
7381 ACCCGACAACCCGAAACCCGAAAAC
1 ACCCGACAACCCGAAACCCGAAAAC
*
7406 ACCCGA-AACCCTACAACCCGAAA
1 ACCCGACAACCCGA-AACCCGAAA
7429 CCCGAACCCG
Statistics
Matches: 77, Mismatches: 7, Indels: 21
0.73 0.07 0.20
Matches are distributed among these distances:
21 1 0.01
22 26 0.34
23 10 0.13
24 9 0.12
25 16 0.21
26 2 0.03
27 4 0.05
28 9 0.12
ACGTcount: A:0.42, C:0.44, G:0.12, T:0.03
Consensus pattern (25 bp):
ACCCGACAACCCGAAACCCGAAAAC
Found at i:7989 original size:7 final size:7
Alignment explanation
Indices: 7471--9390 Score: 1379
Period size: 7 Copynumber: 274.9 Consensus size: 7
7461 GAATCCCCGC
7471 AAACCCT
1 AAACCCT
*
7478 GACACCCT
1 -AAACCCT
*
7486 AAACCACG
1 AAACC-CT
7494 AAA-CCT
1 AAACCCT
*
7500 AAACCCGC
1 AAACCC-T
*
7508 AAACCCG
1 AAACCCT
*
7515 AAACCCG
1 AAACCCT
7522 AAACCCT
1 AAACCCT
*
7529 GAAACCCG
1 -AAACCCT
*
7537 AAACCCG
1 AAACCCT
7544 ACAACCCT
1 A-AACCCT
7552 AAACCCT
1 AAACCCT
*
7559 AAA-CCG
1 AAACCCT
7565 AAACCCT
1 AAACCCT
7572 AAATCCC-
1 AAA-CCCT
* *
7579 GAACCCG
1 AAACCCT
7586 AAACCCT
1 AAACCCT
*
7593 AAACCCG
1 AAACCCT
*
7600 AAACCCG
1 AAACCCT
* *
7607 AACCCCG
1 AAACCCT
*
7614 AAAACCT
1 AAACCCT
7621 AAACCCGT
1 AAACCC-T
7629 AAACCCT
1 AAACCCT
7636 AAACCCT
1 AAACCCT
7643 AAAACCCTT
1 -AAACCC-T
7652 AAACCCT
1 AAACCCT
7659 AAACCCTT
1 AAACCC-T
7667 AAA-CCT
1 AAACCCT
*
7673 CAACCCT
1 AAACCCT
7680 AAACCCT
1 AAACCCT
*
7687 AAACCAT
1 AAACCCT
7694 AAACCCT
1 AAACCCT
7701 AAACCCT
1 AAACCCT
7708 AAACCCT
1 AAACCCT
7715 AAAACCCT
1 -AAACCCT
* *
7723 CACACCCG
1 -AAACCCT
7731 AAACCCT
1 AAACCCT
*
7738 AAACACT
1 AAACCCT
7745 AAA-CCT
1 AAACCCT
7751 AAACCCT
1 AAACCCT
7758 AAACCCT
1 AAACCCT
*
7765 AAAACGCT
1 -AAACCCT
7773 -AACCCT
1 AAACCCT
7779 AAACCCT
1 AAACCCT
7786 AAACCCT
1 AAACCCT
7793 AAA-CCT
1 AAACCCT
7799 AAACCCT
1 AAACCCT
7806 AAA-CCT
1 AAACCCT
7812 -AACCCT
1 AAACCCT
*
7818 AAA-CCG
1 AAACCCT
7824 AAACCCT
1 AAACCCT
7831 AAA-CCT
1 AAACCCT
7837 -AA-CCT
1 AAACCCT
7842 -AACCCT
1 AAACCCT
*
7848 AAACCTT
1 AAACCCT
7855 AAACCCTT
1 AAACCC-T
7863 AAACCCT
1 AAACCCT
7870 AAAACCCT
1 -AAACCCT
7878 AAACCCT
1 AAACCCT
7885 AAACCCT
1 AAACCCT
7892 AAACCC-
1 AAACCCT
7898 AAA-CCT
1 AAACCCT
7904 AAACCCT
1 AAACCCT
7911 -AACCCT
1 AAACCCT
7917 AAA-CCT
1 AAACCCT
7923 AAA-CCT
1 AAACCCT
7929 -AA-CCT
1 AAACCCT
7934 CAAACCCT
1 -AAACCCT
7942 AAA-CCT
1 AAACCCT
7948 AAACCCT
1 AAACCCT
7955 AAA-CCT
1 AAACCCT
7961 AAAACCCT
1 -AAACCCT
7969 AAACCCTAT
1 AAACCC--T
7978 AAACCCCT
1 AAA-CCCT
7986 -AACCCT
1 AAACCCT
*
7992 AACACCAT
1 AA-ACCCT
8000 AAACCCT
1 AAACCCT
8007 AAACCCT
1 AAACCCT
8014 AAACCCT
1 AAACCCT
8021 AAACCCT
1 AAACCCT
8028 AAACCCT
1 AAACCCT
8035 AAACCCT
1 AAACCCT
*
8042 AATAACCT
1 AA-ACCCT
*
8050 GAACCCT
1 AAACCCT
8057 GATGAACCCT
1 -A--AACCCT
*
8067 GAACCCT
1 AAACCCT
*
8074 GAACCCTT
1 AAACCC-T
*
8082 GAACCCT
1 AAACCCT
*
8089 GAACCCT
1 AAACCCT
8096 GAAA-CCT
1 -AAACCCT
*
8103 GAACCCT
1 AAACCCT
*
8110 GAACCCT
1 AAACCCT
*
8117 GAACCCT
1 AAACCCT
*
8124 GAACCCT
1 AAACCCT
* *
8131 GAACCAT
1 AAACCCT
*
8138 GAACCCT
1 AAACCCT
*
8145 GAACCCT
1 AAACCCT
*
8152 GAACCCT
1 AAACCCT
*
8159 GAACCCT
1 AAACCCT
*
8166 GAA-CCT
1 AAACCCT
*
8172 -GACCCT
1 AAACCCT
*
8178 GAACCCT
1 AAACCCT
*
8185 GAACCCT
1 AAACCCT
*
8192 GAACCCT
1 AAACCCT
*
8199 GAA-CCT
1 AAACCCT
*
8205 GAACCCT
1 AAACCCT
*
8212 GAACCCT
1 AAACCCT
*
8219 GAACCCT
1 AAACCCT
*
8226 GAACCCT
1 AAACCCT
*
8233 GAACCCT
1 AAACCCT
* *
8240 GAA-CCG
1 AAACCCT
8246 AAACCCT
1 AAACCCT
*
8253 GAACACCT
1 AAAC-CCT
*
8261 GAACCCT
1 AAACCCT
*
8268 GAACCCT
1 AAACCCT
*
8275 -GACCCT
1 AAACCCT
*
8281 GAACCCT
1 AAACCCT
*
8288 GAACCCT
1 AAACCCT
*
8295 GAA-CCT
1 AAACCCT
*
8301 GAA-CCT
1 AAACCCT
8307 AAACCCT
1 AAACCCT
* *
8314 GACCCCT
1 AAACCCT
*
8321 GAACCCT
1 AAACCCT
*
8328 GAA-CCT
1 AAACCCT
*
8334 GAACCCT
1 AAACCCT
*
8341 GAACCCT
1 AAACCCT
*
8348 GAACCCT
1 AAACCCT
*
8355 GAACCCT
1 AAACCCT
*
8362 GAACCCT
1 AAACCCT
*
8369 GAACCCT
1 AAACCCT
*
8376 GAACCCT
1 AAACCCT
*
8383 GAACCCT
1 AAACCCT
*
8390 GAACCCT
1 AAACCCT
*
8397 GAACCCT
1 AAACCCT
*
8404 GAACCCT
1 AAACCCT
8411 GAAA-CCT
1 -AAACCCT
8418 GAAACCCT
1 -AAACCCT
*
8426 GAACCCT
1 AAACCCT
*
8433 GAACCCT
1 AAACCCT
*
8440 GAACCCT
1 AAACCCT
*
8447 GAACCCT
1 AAACCCT
*
8454 GAACCCT
1 AAACCCT
*
8461 GAA-CCT
1 AAACCCT
*
8467 GAACCCT
1 AAACCCT
*
8474 GAACCCT
1 AAACCCT
8481 GAAACCCT
1 -AAACCCT
8489 GAACCGACCCT
1 -AA---ACCCT
*
8500 GAACCCT
1 AAACCCT
*
8507 GAACCCT
1 AAACCCT
*
8514 GAACCCT
1 AAACCCT
*
8521 GAACCCT
1 AAACCCT
*
8528 GAACCCT
1 AAACCCT
*
8535 GAACCCT
1 AAACCCT
*
8542 GAACCCT
1 AAACCCT
*
8549 GAACCCT
1 AAACCCT
*
8556 GAACCCT
1 AAACCCT
*
8563 GAACCCT
1 AAACCCT
*
8570 GAACCCT
1 AAACCCT
*
8577 GAACCCT
1 AAACCCT
*
8584 GAACCCT
1 AAACCCT
*
8591 GAACCCT
1 AAACCCT
*
8598 GAA-CC-
1 AAACCCT
*
8603 GAACCCT
1 AAACCCT
*
8610 GAA-CCT
1 AAACCCT
*
8616 GAACCCT
1 AAACCCT
*
8623 GAACCCT
1 AAACCCT
*
8630 GAACCCT
1 AAACCCT
*
8637 GAACCCT
1 AAACCCT
*
8644 GAACCCT
1 AAACCCT
*
8651 GAACCCT
1 AAACCCT
*
8658 GAACCCT
1 AAACCCT
*
8665 GAACCCT
1 AAACCCT
*
8672 GAACCCT
1 AAACCCT
*
8679 GAACCCT
1 AAACCCT
*
8686 GAACCCT
1 AAACCCT
*
8693 GAACCCT
1 AAACCCT
*
8700 GAACCCT
1 AAACCCT
*
8707 GAACCCT
1 AAACCCT
*
8714 GAACCCT
1 AAACCCT
*
8721 GAACCCT
1 AAACCCT
*
8728 GAACCCT
1 AAACCCT
*
8735 GAACCCT
1 AAACCCT
*
8742 GAACCCT
1 AAACCCT
*
8749 GAACCCT
1 AAACCCT
*
8756 GAACCCT
1 AAACCCT
*
8763 GAACCCT
1 AAACCCT
*
8770 GAACCCT
1 AAACCCT
*
8777 GAACCCT
1 AAACCCT
*
8784 GAACCCT
1 AAACCCT
*
8791 GAACCCT
1 AAACCCT
*
8798 GAACCCT
1 AAACCCT
*
8805 GAACCCT
1 AAACCCT
*
8812 GAACCCT
1 AAACCCT
*
8819 GAACCCT
1 AAACCCT
*
8826 GAACCCT
1 AAACCCT
*
8833 GAACCCT
1 AAACCCT
*
8840 GAACCCT
1 AAACCCT
*
8847 GAACCCT
1 AAACCCT
*
8854 GAA-CCT
1 AAACCCT
*
8860 GAACCCT
1 AAACCCT
*
8867 GAACCCT
1 AAACCCT
*
8874 GAACCCT
1 AAACCCT
*
8881 GAACCCT
1 AAACCCT
*
8888 GAACCCT
1 AAACCCT
*
8895 GAACCCT
1 AAACCCT
*
8902 GAACCCT
1 AAACCCT
*
8909 GAACCCT
1 AAACCCT
*
8916 GAACCCT
1 AAACCCT
*
8923 GAACCCT
1 AAACCCT
*
8930 GAACCCT
1 AAACCCT
*
8937 GAACCCT
1 AAACCCT
*
8944 GAACCCT
1 AAACCCT
*
8951 GAACCCT
1 AAACCCT
*
8958 GAACCCT
1 AAACCCT
*
8965 GAACCCT
1 AAACCCT
*
8972 GAA-CCT
1 AAACCCT
8978 GACAA-CCT
1 -A-AACCCT
*
8986 GAACCCT
1 AAACCCT
*
8993 GAACCCT
1 AAACCCT
*
9000 GAACCCT
1 AAACCCT
*
9007 GAACCCT
1 AAACCCT
*
9014 GAA-CCT
1 AAACCCT
*
9020 GAACCCT
1 AAACCCT
*
9027 GAACCCT
1 AAACCCT
*
9034 GAACCCT
1 AAACCCT
*
9041 GAACCCT
1 AAACCCT
9048 GAAACCCT
1 -AAACCCT
*
9056 GAACCCT
1 AAACCCT
*
9063 GAACCCT
1 AAACCCT
*
9070 GAACCCT
1 AAACCCT
*
9077 GAACCCT
1 AAACCCT
*
9084 GAACCCT
1 AAACCCT
9091 AAACCCT
1 AAACCCT
9098 AAACCCT
1 AAACCCT
9105 AAACCCT
1 AAACCCT
9112 AAACCCT
1 AAACCCT
*
9119 AAGCCCT
1 AAACCCT
*
9126 AAGCCCT
1 AAACCCT
9133 AAACCCT
1 AAACCCT
*
9140 AAGCCCT
1 AAACCCT
9147 AAACCCT
1 AAACCCT
9154 AAACCCT
1 AAACCCT
9161 AAACCCT
1 AAACCCT
*
9168 AAGCCCT
1 AAACCCT
*
9175 AAGCCCT
1 AAACCCT
*
9182 AAGCCCT
1 AAACCCT
*
9189 AAGCCCT
1 AAACCCT
*
9196 AAGCCCT
1 AAACCCT
*
9203 AAGCCCT
1 AAACCCT
*
9210 AAGCCCT
1 AAACCCT
*
9217 AAGCCCT
1 AAACCCT
*
9224 AAGCCCT
1 AAACCCT
*
9231 AAGCCCT
1 AAACCCT
*
9238 AAGCCCT
1 AAACCCT
*
9245 AAGCCCT
1 AAACCCT
*
9252 AAGCCCT
1 AAACCCT
*
9259 AAGCCCT
1 AAACCCT
*
9266 AAGCCCT
1 AAACCCT
*
9273 AAGCCCT
1 AAACCCT
*
9280 AAGCCCT
1 AAACCCT
*
9287 AAGCCCT
1 AAACCCT
*
9294 AAGCCCT
1 AAACCCT
*
9301 AAGCCCT
1 AAACCCT
*
9308 AAGCCCT
1 AAACCCT
*
9315 AAGCCCT
1 AAACCCT
*
9322 AAGCCCT
1 AAACCCT
*
9329 AAGCCCT
1 AAACCCT
*
9336 AAGCCCT
1 AAACCCT
*
9343 AAGCCCT
1 AAACCCT
*
9350 AAGCCCT
1 AAACCCT
*
9357 AAGCCCT
1 AAACCCT
*
9364 AAGGCCCT
1 AA-ACCCT
* *
9372 AAGCCCC
1 AAACCCT
9379 AAACCC-
1 AAACCCT
9385 AAACCC
1 AAACCC
9391 CAAAGCCCCA
Statistics
Matches: 1765, Mismatches: 76, Indels: 144
0.89 0.04 0.07
Matches are distributed among these distances:
5 20 0.01
6 161 0.09
7 1412 0.80
8 152 0.09
9 5 0.00
10 10 0.01
11 5 0.00
ACGTcount: A:0.34, C:0.42, G:0.11, T:0.14
Consensus pattern (7 bp):
AAACCCT
Found at i:9392 original size:7 final size:7
Alignment explanation
Indices: 9375--9784 Score: 287
Period size: 7 Copynumber: 59.3 Consensus size: 7
9365 AGGCCCTAAG
9375 CCCCAAA
1 CCCCAAA
9382 -CCCAAA
1 CCCCAAA
9388 CCCCAAA
1 CCCCAAA
9395 GCCCC-AA
1 -CCCCAAA
9402 CCCC-AA
1 CCCCAAA
9408 CCCCAAA
1 CCCCAAA
9415 CCCCAAA
1 CCCCAAA
*
9422 CCCCAGA
1 CCCCAAA
*
9429 -CCCAGA
1 CCCCAAA
*
9435 CCCCAGA
1 CCCCAAA
*
9442 CCCCAGA
1 CCCCAAA
*
9449 CCCCAGA
1 CCCCAAA
*
9456 CCCCAGA
1 CCCCAAA
*
9463 CCCCAGA
1 CCCCAAA
*
9470 CCCCAGA
1 CCCCAAA
*
9477 CCCCAGA
1 CCCCAAA
*
9484 CCCCAGA
1 CCCCAAA
*
9491 CCCCAGA
1 CCCCAAA
*
9498 CCCCAGA
1 CCCCAAA
*
9505 CCCCAGA
1 CCCCAAA
*
9512 CCCCAGA
1 CCCCAAA
*
9519 CCCCAGA
1 CCCCAAA
*
9526 CCCCAGA
1 CCCCAAA
*
9533 CCCCAGA
1 CCCCAAA
*
9540 CCCCAGA
1 CCCCAAA
*
9547 CCCCAGA
1 CCCCAAA
*
9554 CCCCAGA
1 CCCCAAA
*
9561 CCCCAGA
1 CCCCAAA
*
9568 CCCCAGA
1 CCCCAAA
*
9575 CCCCAGA
1 CCCCAAA
*
9582 CCCCAGA
1 CCCCAAA
*
9589 CCCCAGA
1 CCCCAAA
*
9596 CCCCAGA
1 CCCCAAA
*
9603 CCCCAGA
1 CCCCAAA
*
9610 --CCAGA
1 CCCCAAA
*
9615 CCCCGAA
1 CCCCAAA
*
9622 CCCCGAA
1 CCCCAAA
*
9629 CCCCGAA
1 CCCCAAA
*
9636 CCCCGAA
1 CCCCAAA
*
9643 CCCCGAA
1 CCCCAAA
*
9650 CCCCGAA
1 CCCCAAA
*
9657 CCCCGAA
1 CCCCAAA
*
9664 CCCCGAA
1 CCCCAAA
*
9671 CCCCGAA
1 CCCCAAA
*
9678 CCCCGAA
1 CCCCAAA
*
9685 CCCCGAA
1 CCCCAAA
*
9692 CCCCGAA
1 CCCCAAA
*
9699 CCCCGAA
1 CCCCAAA
9706 CCCC-AA
1 CCCCAAA
**
9712 CTCTTAAA
1 C-CCCAAA
*
9720 CCCTAAA
1 CCCCAAA
9727 CCCCAAA
1 CCCCAAA
9734 CCCC-AA
1 CCCCAAA
**
9740 CTCTTAAA
1 C-CCCAAA
*
9748 CCCTAAA
1 CCCCAAA
*
9755 CCCTAAA
1 CCCCAAA
9762 CCCCAAA
1 CCCCAAA
*
9769 CCCTAAA
1 CCCCAAA
*
9776 CCCTAAA
1 CCCCAAA
9783 CC
1 CC
9785 TTTAAGGTTG
Statistics
Matches: 381, Mismatches: 12, Indels: 20
0.92 0.03 0.05
Matches are distributed among these distances:
5 5 0.01
6 28 0.07
7 338 0.89
8 10 0.03
ACGTcount: A:0.32, C:0.55, G:0.10, T:0.03
Consensus pattern (7 bp):
CCCCAAA
Found at i:9455 original size:21 final size:21
Alignment explanation
Indices: 9382--9618 Score: 394
Period size: 21 Copynumber: 11.5 Consensus size: 21
9372 AAGCCCCAAA
* *
9382 CCCAAACCCCAAAGCCCCA-AC
1 CCCAGACCCCAGA-CCCCAGAC
* *
9403 CCCA-ACCCCAAACCCCAAAC
1 CCCAGACCCCAGACCCCAGAC
9423 CCCAGA-CCCAGACCCCAGAC
1 CCCAGACCCCAGACCCCAGAC
9443 CCCAGACCCCAGACCCCAGAC
1 CCCAGACCCCAGACCCCAGAC
9464 CCCAGACCCCAGACCCCAGAC
1 CCCAGACCCCAGACCCCAGAC
9485 CCCAGACCCCAGACCCCAGAC
1 CCCAGACCCCAGACCCCAGAC
9506 CCCAGACCCCAGACCCCAGAC
1 CCCAGACCCCAGACCCCAGAC
9527 CCCAGACCCCAGACCCCAGAC
1 CCCAGACCCCAGACCCCAGAC
9548 CCCAGACCCCAGACCCCAGAC
1 CCCAGACCCCAGACCCCAGAC
9569 CCCAGACCCCAGACCCCAGAC
1 CCCAGACCCCAGACCCCAGAC
9590 CCCAGACCCCAGACCCCAGA-
1 CCCAGACCCCAGACCCCAGAC
9610 -CCAGACCCC
1 CCCAGACCCC
9619 GAACCCCGAA
Statistics
Matches: 211, Mismatches: 2, Indels: 8
0.95 0.01 0.04
Matches are distributed among these distances:
19 14 0.07
20 32 0.15
21 165 0.78
ACGTcount: A:0.30, C:0.57, G:0.12, T:0.00
Consensus pattern (21 bp):
CCCAGACCCCAGACCCCAGAC
Found at i:10675 original size:3 final size:3
Alignment explanation
Indices: 10667--10703 Score: 56
Period size: 3 Copynumber: 12.3 Consensus size: 3
10657 GCTCTAAATG
* *
10667 ATA ATA ATA AAA ATA ATA ATA ATA ATA ATG ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
10704 AATTCTTTAT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.68, C:0.00, G:0.03, T:0.30
Consensus pattern (3 bp):
ATA
Found at i:11377 original size:19 final size:19
Alignment explanation
Indices: 11323--11377 Score: 65
Period size: 20 Copynumber: 2.8 Consensus size: 19
11313 TTTTTTAATT
* *
11323 TGAGTAGTTTTTAAAAAAA
1 TGAGTAATTTTTAAAGAAA
*
11342 TGAGTAATCTTTTAAAGAAG
1 TGAGTAAT-TTTTAAAGAAA
*
11362 TGGGTAATTTTTAAAG
1 TGAGTAATTTTTAAAG
11378 TTTTAGTACT
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
19 15 0.48
20 16 0.52
ACGTcount: A:0.40, C:0.02, G:0.20, T:0.38
Consensus pattern (19 bp):
TGAGTAATTTTTAAAGAAA
Found at i:13771 original size:2 final size:2
Alignment explanation
Indices: 13764--13798 Score: 52
Period size: 2 Copynumber: 17.5 Consensus size: 2
13754 TTGATTCAAC
* *
13764 AT AT AT AT AT AT AT AT AT AT AT AT AA AT TT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
13799 GACATAATCA
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:17165 original size:17 final size:17
Alignment explanation
Indices: 17143--17176 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
17133 GCATGAAGGA
*
17143 CTTTTTTCATATGCTTT
1 CTTTTTTCAGATGCTTT
17160 CTTTTTTCAGATGCTTT
1 CTTTTTTCAGATGCTTT
17177 AGACAACTAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.12, C:0.18, G:0.09, T:0.62
Consensus pattern (17 bp):
CTTTTTTCAGATGCTTT
Found at i:22325 original size:97 final size:97
Alignment explanation
Indices: 22159--22345 Score: 304
Period size: 97 Copynumber: 1.9 Consensus size: 97
22149 ATTGTAGCTG
* *
22159 AAAAATGGGGTTGGAGTATCCCCTCAGAAAGATGGGGTTGGAATGTCCTCATGGATGATAATTTA
1 AAAAATGGGGTTAGAGTATCCCCTCAGAAAGATGGGGTTGGAATCTCCTCATGGATGATAATTTA
22224 AGAAAAAATAAGATTTAAATCTTGACAAGTTT
66 AGAAAAAATAAGATTTAAATCTTGACAAGTTT
* * * *
22256 AAAAATGGGGTTAGAGTATCCCCTC-GGAGGAATGGGGTTGGATTCTCCTCGTGGATGATAATTT
1 AAAAATGGGGTTAGAGTATCCCCTCAGAAAG-ATGGGGTTGGAATCTCCTCATGGATGATAATTT
22320 AAGAAAAAATAAGATTTAAATCTTGA
65 AAGAAAAAATAAGATTTAAATCTTGA
22346 ATAATTTTTA
Statistics
Matches: 83, Mismatches: 6, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
96 3 0.04
97 80 0.96
ACGTcount: A:0.36, C:0.11, G:0.25, T:0.29
Consensus pattern (97 bp):
AAAAATGGGGTTAGAGTATCCCCTCAGAAAGATGGGGTTGGAATCTCCTCATGGATGATAATTTA
AGAAAAAATAAGATTTAAATCTTGACAAGTTT
Found at i:28055 original size:51 final size:51
Alignment explanation
Indices: 28030--28126 Score: 158
Period size: 51 Copynumber: 1.9 Consensus size: 51
28020 TACATTTTTC
***
28030 AATGTATCGATACATTTGGGTAAAAAAATAGAATGTATCAATACATTGAAA
1 AATGTATCGATACATCCAGGTAAAAAAATAGAATGTATCAATACATTGAAA
*
28081 AATGTATCGATACATCCAGGTAAAAAAAAAGAATGTATCAATACAT
1 AATGTATCGATACATCCAGGTAAAAAAATAGAATGTATCAATACAT
28127 GTACTATTCA
Statistics
Matches: 42, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
51 42 1.00
ACGTcount: A:0.48, C:0.10, G:0.14, T:0.27
Consensus pattern (51 bp):
AATGTATCGATACATCCAGGTAAAAAAATAGAATGTATCAATACATTGAAA
Found at i:28974 original size:2 final size:2
Alignment explanation
Indices: 28967--28992 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
28957 TTTAGAACAA
28967 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
28993 TTAGCCATAG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:34297 original size:86 final size:86
Alignment explanation
Indices: 34175--34338 Score: 283
Period size: 86 Copynumber: 1.9 Consensus size: 86
34165 GATATTTTAA
* * *
34175 AAGTTTTTTGTGGTTCACAAGGCAAAATTTCTTCCTACCATTAATTGACACCACTAATTTTATAA
1 AAGTTTTTCGTGGTTCACAAAGCAAAATTTCGTCCTACCATTAATTGACACCACTAATTTTATAA
34240 AATTTAGAGTGATATTTTTTG
66 AATTTAGAGTGATATTTTTTG
* *
34261 AAGTTTTTCGTGGTTCCCAAAGCATAATTTCGTCCTACCATTAATTGACACCACTAATTTTATAA
1 AAGTTTTTCGTGGTTCACAAAGCAAAATTTCGTCCTACCATTAATTGACACCACTAATTTTATAA
34326 AATTTAGAGTGAT
66 AATTTAGAGTGAT
34339 CTAATTGTTG
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
86 73 1.00
ACGTcount: A:0.32, C:0.16, G:0.13, T:0.40
Consensus pattern (86 bp):
AAGTTTTTCGTGGTTCACAAAGCAAAATTTCGTCCTACCATTAATTGACACCACTAATTTTATAA
AATTTAGAGTGATATTTTTTG
Found at i:36494 original size:17 final size:18
Alignment explanation
Indices: 36474--36508 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
36464 TCATATTATA
*
36474 TTTATATTTA-AAATTTT
1 TTTAAATTTATAAATTTT
36491 TTTAAATTTATAAATTTT
1 TTTAAATTTATAAATTTT
36509 AATTATTTAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 9 0.56
18 7 0.44
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (18 bp):
TTTAAATTTATAAATTTT
Found at i:40498 original size:23 final size:23
Alignment explanation
Indices: 40464--40510 Score: 76
Period size: 23 Copynumber: 2.0 Consensus size: 23
40454 TATCTTAAAG
*
40464 TAAGAATAATTCATTAGTCAATT
1 TAAGAATAATTCATTAGCCAATT
*
40487 TAAGAATGATTCATTAGCCAATT
1 TAAGAATAATTCATTAGCCAATT
40510 T
1 T
40511 TGTTTCAATA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.40, C:0.11, G:0.11, T:0.38
Consensus pattern (23 bp):
TAAGAATAATTCATTAGCCAATT
Found at i:41316 original size:13 final size:15
Alignment explanation
Indices: 41298--41333 Score: 51
Period size: 14 Copynumber: 2.6 Consensus size: 15
41288 TTTTGCATAC
41298 AAAATTTT-TC-ATT
1 AAAATTTTGTCTATT
41311 AAAATTTTGTCTATT
1 AAAATTTTGTCTATT
41326 -AAATTTTG
1 AAAATTTTG
41334 AATTGAACTA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
13 8 0.38
14 10 0.48
15 3 0.14
ACGTcount: A:0.36, C:0.06, G:0.06, T:0.53
Consensus pattern (15 bp):
AAAATTTTGTCTATT
Found at i:44444 original size:155 final size:156
Alignment explanation
Indices: 44196--44501 Score: 345
Period size: 154 Copynumber: 2.0 Consensus size: 156
44186 CCATAGAGGT
* * ** *
44196 ATTTTTGTAATTTCTCTAGAACCGAGTCCTAGGTTGTCATCAGGTCCGCTTTTATGCCGAAGGTA
1 ATTTTTGTAATTTCTCTAGAACCAACTCCTAGGTCATCATCAGGTCCGCTTTTAAGCCGAAGGTA
**
44261 GATATTTAGGATAAGTTCATTACATTTAAAAATTTTTTTAAAGTCC-TTTAGGGATATCGAGTAC
66 GATATTTAGGATAAGTTCATTACATTT-AAAATCCTTTTAAAGTCCTTTTA-GGATATCGAGTAC
* * *
44325 TTTTACTTAGAAGGTATCTCTTAAGAGC
129 TTCTACGTAGAAGGTATCCCTTAAGAGC
* **
44353 ATTTTTGTAATTT-TCTAGAACCAACTCCT-GGTCATCA-CTAGGTCTGCTTTTAAGTTGAAGGT
1 ATTTTTGTAATTTCTCTAGAACCAACTCCTAGGTCATCATC-AGGTCCGCTTTTAAGCCGAAGGT
* * * * * *
44415 GGATATTTAGGA-AAGGTTTA-TCCATTTTAAAATCCTTTTGAAGTCCTTTTAGGCTATCGGGTA
65 AGATATTTAGGATAA-GTTCATTACA-TTTAAAATCCTTTTAAAGTCCTTTTAGGATATCGAGTA
*
44478 CTTCTACGTCGAAGGTATCCCTTA
128 CTTCTACGTAGAAGGTATCCCTTA
44502 GGGGCATCTT
Statistics
Matches: 125, Mismatches: 20, Indels: 11
0.80 0.13 0.07
Matches are distributed among these distances:
154 51 0.41
155 47 0.38
156 14 0.11
157 13 0.10
ACGTcount: A:0.26, C:0.16, G:0.19, T:0.39
Consensus pattern (156 bp):
ATTTTTGTAATTTCTCTAGAACCAACTCCTAGGTCATCATCAGGTCCGCTTTTAAGCCGAAGGTA
GATATTTAGGATAAGTTCATTACATTTAAAATCCTTTTAAAGTCCTTTTAGGATATCGAGTACTT
CTACGTAGAAGGTATCCCTTAAGAGC
Found at i:44518 original size:154 final size:155
Alignment explanation
Indices: 44254--44533 Score: 334
Period size: 154 Copynumber: 1.8 Consensus size: 155
44244 CTTTTATGCC
**
44254 GAAGGTAGATATTTAGGATAAGTTCATTACATTTAAAAATTTTTTTAAAGTCCTTTAGGGATATC
1 GAAGGTAGATATTTAGGATAAGTTCATTACATTTAAAAATCCTTTTAAAGTCCTTTAGGGATATC
* * * * ** *
44319 GAGTACTTTTACTTAGAAGGTATCTCTTAAGAGCATTTTTGTAA-TTTTCTAGAACCAACTCCTG
66 GAGTACTTCTACGTAGAAGGTATCCCTTAAGAGCATCTTCATAATTTTTC-AAAACCAACTCCTG
44383 GTCATCACTAGGTCTGCTTTTAAGTT
130 GTCATCACTAGGTCTGCTTTTAAGTT
* * * * * *
44409 GAAGGTGGATATTTAGGA-AAGGTTTA-TCCATTTTAAAATCCTTTTGAAGTCCTTTTA-GGCTA
1 GAAGGTAGATATTTAGGATAA-GTTCATTACATTTAAAAATCCTTTTAAAGTCC-TTTAGGGATA
* * * *
44471 TCGGGTACTTCTACGTCGAAGGTATCCCTTAGGGGCATCTTCATAATTTTTCAAAACCAACTC
64 TCGAGTACTTCTACGTAGAAGGTATCCCTTAAGAGCATCTTCATAATTTTTCAAAACCAACTC
44534 TTAGGTAAGG
Statistics
Matches: 103, Mismatches: 19, Indels: 7
0.80 0.15 0.05
Matches are distributed among these distances:
154 73 0.71
155 30 0.29
ACGTcount: A:0.29, C:0.16, G:0.18, T:0.38
Consensus pattern (155 bp):
GAAGGTAGATATTTAGGATAAGTTCATTACATTTAAAAATCCTTTTAAAGTCCTTTAGGGATATC
GAGTACTTCTACGTAGAAGGTATCCCTTAAGAGCATCTTCATAATTTTTCAAAACCAACTCCTGG
TCATCACTAGGTCTGCTTTTAAGTT
Found at i:47574 original size:20 final size:19
Alignment explanation
Indices: 47549--47655 Score: 93
Period size: 20 Copynumber: 5.7 Consensus size: 19
47539 TTTACCCAGA
47549 TGTATCGATACATTTTGCAT
1 TGTATCGATACATTTT-CAT
47569 TGTATCGATACATTGCTT-AT
1 TGTATCGATACATT--TTCAT
*
47589 TATATCGAT--A----CAT
1 TGTATCGATACATTTTCAT
*
47602 TGTATCGATACATTGCTCAT
1 TGTATCGATACATT-TTCAT
*
47622 TGTATCGATACATTTTACAA
1 TGTATCGATACATTTT-CAT
47642 TGTATCGATACATT
1 TGTATCGATACATT
47656 CAGGCATTTT
Statistics
Matches: 72, Mismatches: 4, Indels: 22
0.73 0.04 0.22
Matches are distributed among these distances:
13 10 0.14
15 1 0.01
18 1 0.01
19 1 0.01
20 57 0.79
22 2 0.03
ACGTcount: A:0.29, C:0.16, G:0.13, T:0.42
Consensus pattern (19 bp):
TGTATCGATACATTTTCAT
Found at i:47608 original size:33 final size:33
Alignment explanation
Indices: 47566--47635 Score: 122
Period size: 33 Copynumber: 2.1 Consensus size: 33
47556 ATACATTTTG
*
47566 CATTGTATCGATACATTGCTTATTATATCGATA
1 CATTGTATCGATACATTGCTCATTATATCGATA
*
47599 CATTGTATCGATACATTGCTCATTGTATCGATA
1 CATTGTATCGATACATTGCTCATTATATCGATA
47632 CATT
1 CATT
47636 TTACAATGTA
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
33 35 1.00
ACGTcount: A:0.29, C:0.17, G:0.13, T:0.41
Consensus pattern (33 bp):
CATTGTATCGATACATTGCTCATTATATCGATA
Found at i:47635 original size:13 final size:13
Alignment explanation
Indices: 47591--47616 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
47581 TTGCTTATTA
47591 TATCGATACATTG
1 TATCGATACATTG
47604 TATCGATACATTG
1 TATCGATACATTG
47617 CTCATTGTAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TATCGATACATTG
Found at i:47648 original size:53 final size:52
Alignment explanation
Indices: 47549--47655 Score: 137
Period size: 53 Copynumber: 2.0 Consensus size: 52
47539 TTTACCCAGA
* *
47549 TGTATCGATACATTTTGCATTGTATCGATACATTGCTTATTATATCGATACAT
1 TGTATCGATACATTCTGCATTGTATCGATACATT-CTTAATATATCGATACAT
*
47602 TGTATCGATACATTGCT-CATTGTATCGATACATT-TTACAATGTATCGATACAT
1 TGTATCGATACATT-CTGCATTGTATCGATACATTCTT--AATATATCGATACAT
47655 T
1 T
47656 CAGGCATTTT
Statistics
Matches: 48, Mismatches: 3, Indels: 6
0.84 0.05 0.11
Matches are distributed among these distances:
51 2 0.04
53 45 0.94
54 1 0.02
ACGTcount: A:0.29, C:0.16, G:0.13, T:0.42
Consensus pattern (52 bp):
TGTATCGATACATTCTGCATTGTATCGATACATTCTTAATATATCGATACAT
Found at i:50014 original size:51 final size:51
Alignment explanation
Indices: 49939--50118 Score: 211
Period size: 51 Copynumber: 3.5 Consensus size: 51
49929 TAAATTTTTA
* * * * *
49939 AATTTTTCAT-CTCGGGGTTACTCCAA-TCCCGGTTTCATTTCCAAAACATT
1 AATTTTTCATAATCGGGGATACTCCAACT-CCGATTTTATTTCCAAAACACT
* * * * *
49989 AATTTTTCTTAATCGGGGATGCTCCAACTCTGATTTTATTTCTAAAACACC
1 AATTTTTCATAATCGGGGATACTCCAACTCCGATTTTATTTCCAAAACACT
* * *
50040 CATTTTCCATAATCGGGGATACTCCAACTCTGATTTTATTTCCAAAACACT
1 AATTTTTCATAATCGGGGATACTCCAACTCCGATTTTATTTCCAAAACACT
*
50091 GATTTTTCATAATCGGGGATACTCCAAC
1 AATTTTTCATAATCGGGGATACTCCAAC
50119 CCCGTTATTT
Statistics
Matches: 110, Mismatches: 18, Indels: 3
0.84 0.14 0.02
Matches are distributed among these distances:
50 9 0.08
51 100 0.91
52 1 0.01
ACGTcount: A:0.27, C:0.24, G:0.12, T:0.37
Consensus pattern (51 bp):
AATTTTTCATAATCGGGGATACTCCAACTCCGATTTTATTTCCAAAACACT
Found at i:50265 original size:128 final size:130
Alignment explanation
Indices: 50000--50275 Score: 400
Period size: 128 Copynumber: 2.1 Consensus size: 130
49990 ATTTTTCTTA
* * * *
50000 ATCGGGGATGCTCCAA-CTCTGATTTTATTTCTAAAACACCCATTTTCCATAATCGGGGATACTC
1 ATCGGGGATACTCCAACCTCTGATTTTATTTCTAAAACACCAATTCTCCACAATCGGGGATACTC
* * *
50064 CAACTCTGATTTTATTTCCAAAACACTGATTTTTCATAATCGGGGATACTCCAACCCCGTTATTT
66 CAACTCCGATTTTATTTCCAAAACACTAATTTTTCACAATCGGGGATACTCCAACCCCGTTATTT
* *
50129 -TCGAGGGGATACTCTAACCTC-GA-TTT-TTTCTAAAACACCAATTCTCCACAATCGGGGATAT
1 ATC--GGGGATACTCCAACCTCTGATTTTATTTCTAAAACACCAATTCTCCACAATCGGGGATAC
*
50190 TCCAACTCCGATTTTATTTCCAAAACACTAATTTTTCACAATCGGGGATACTTCAACCCCGTTAT
64 TCCAACTCCGATTTTATTTCCAAAACACTAATTTTTCACAATCGGGGATACTCCAACCCCGTTAT
50255 TT
129 TT
50257 CATCGGGGATACTCCAACC
1 -ATCGGGGATACTCCAACC
50276 CGTTGTTTCC
Statistics
Matches: 131, Mismatches: 11, Indels: 11
0.86 0.07 0.07
Matches are distributed among these distances:
128 110 0.84
129 3 0.02
130 15 0.11
131 3 0.02
ACGTcount: A:0.28, C:0.26, G:0.13, T:0.33
Consensus pattern (130 bp):
ATCGGGGATACTCCAACCTCTGATTTTATTTCTAAAACACCAATTCTCCACAATCGGGGATACTC
CAACTCCGATTTTATTTCCAAAACACTAATTTTTCACAATCGGGGATACTCCAACCCCGTTATTT
Found at i:50266 original size:28 final size:27
Alignment explanation
Indices: 50230--50303 Score: 89
Period size: 27 Copynumber: 2.7 Consensus size: 27
50220 ATTTTTCACA
*
50230 ATCGGGGATACTTCAACCCCGTTATTTC
1 ATCGGGGATACTCCAA-CCCGTTATTTC
*
50258 ATCGGGGATACTCCAACCCGTTGTTTC
1 ATCGGGGATACTCCAACCCGTTATTTC
50285 --CGAGGAGATACTCCAACCC
1 ATCG-GG-GATACTCCAACCC
50304 CAGCTTTATT
Statistics
Matches: 42, Mismatches: 2, Indels: 5
0.86 0.04 0.10
Matches are distributed among these distances:
25 2 0.05
26 2 0.05
27 23 0.55
28 15 0.36
ACGTcount: A:0.23, C:0.31, G:0.20, T:0.26
Consensus pattern (27 bp):
ATCGGGGATACTCCAACCCGTTATTTC
Found at i:50353 original size:51 final size:52
Alignment explanation
Indices: 50291--50407 Score: 148
Period size: 51 Copynumber: 2.3 Consensus size: 52
50281 TTTCCGAGGA
* *
50291 GATACTCCAACCCCAG-CTTTATTTCCAAAATATTGATTTCTCACAATCAGG
1 GATACTCCAACCCCAGACCTTATTTCCAAAATATTGATTTCTAACAATCAGG
* * * * **
50342 GATACTTCAA-CCCTGACCTTATTTCTAAAATATTGATTTCTAATAATTGGG
1 GATACTCCAACCCCAGACCTTATTTCCAAAATATTGATTTCTAACAATCAGG
50393 GATACTCCAACCCCA
1 GATACTCCAACCCCA
50408 TTATTTTCAC
Statistics
Matches: 54, Mismatches: 10, Indels: 3
0.81 0.15 0.04
Matches are distributed among these distances:
50 4 0.07
51 47 0.87
52 3 0.06
ACGTcount: A:0.32, C:0.26, G:0.10, T:0.32
Consensus pattern (52 bp):
GATACTCCAACCCCAGACCTTATTTCCAAAATATTGATTTCTAACAATCAGG
Found at i:50592 original size:130 final size:129
Alignment explanation
Indices: 50258--50593 Score: 333
Period size: 130 Copynumber: 2.6 Consensus size: 129
50248 CCGTTATTTC
* * * *
50258 ATCGGGGATACTCCAA-CCCGTTGTTTCCGAGGAGATACTCCAACCCCAGCTTTATTTCCAAAAT
1 ATCGGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCC-GTTTTATTTCCAAAAT
* * *
50322 ATTGATTTCTCACAATCAGGGATACTTCAACCCTGACCTTATTTCTAAAATATTGATTTCTAATA
65 ATTAATTTCTCACAATCAGGGACACTTCAACCCTGACCTTATTTCTAAAATATTGATTTCTAACA
* * * * * ***
50387 ATTGGGGATACTCCAACCCCATTATTTTC-ACGGGGATACTCAAATCCTGATTTTATTTTTGAAA
1 ATCGGGGATACTCCAACCCCGTTATTTTCGA-GGGGATACTCCAACCCCG-TTTTATTTCCAAAA
* * * * * *
50451 CATCTATTTTCT-ATAATCGGGGACACTTCAACCCTTG-CTTTATTTCT-AAATAATTGATTTTT
64 TAT-TAATTTCTCACAATCAGGGACACTTCAACCC-TGACCTTATTTCTAAAAT-ATTGATTTCT
*
50513 TACA
126 AACA
* *
50517 ATCGGGGATA-TCCCAACCCCGTTATTTTCGAGGGGATACTCCGACCCCGTTATTATCTCCAAAA
1 ATCGGGGATACT-CCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCGTT-TTATTTCCAAAA
50581 TATTAAATTTCTC
64 TATT-AATTTCTC
50594 GTCGGAAGAT
Statistics
Matches: 162, Mismatches: 34, Indels: 20
0.75 0.16 0.09
Matches are distributed among these distances:
129 25 0.15
130 128 0.79
131 9 0.06
ACGTcount: A:0.28, C:0.24, G:0.13, T:0.35
Consensus pattern (129 bp):
ATCGGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCGTTTTATTTCCAAAATA
TTAATTTCTCACAATCAGGGACACTTCAACCCTGACCTTATTTCTAAAATATTGATTTCTAACA
Found at i:53029 original size:1 final size:1
Alignment explanation
Indices: 53023--53088 Score: 60
Period size: 1 Copynumber: 66.0 Consensus size: 1
53013 CTTCTCTTCT
* * * * * * * *
53023 AAAAAAAACAAAAACAAAAAAAAAAACAAAAACAAAAAACAAAAAAAAAACAAAACAAAGAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
53088 A
1 A
53089 GAGAGAAAAG
Statistics
Matches: 49, Mismatches: 16, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
1 49 1.00
ACGTcount: A:0.88, C:0.11, G:0.02, T:0.00
Consensus pattern (1 bp):
A
Found at i:53037 original size:6 final size:6
Alignment explanation
Indices: 53026--53081 Score: 80
Period size: 6 Copynumber: 9.5 Consensus size: 6
53016 CTCTTCTAAA
*
53026 AAAAAC AAAAAC AAAAAA AAAAAC AAAAAC AAAAAAC AAAAA- AAAAAC
1 AAAAAC AAAAAC AAAAAC AAAAAC AAAAAC -AAAAAC AAAAAC AAAAAC
53074 -AAAAC AAA
1 AAAAAC AAA
53082 GAAAAAAGAG
Statistics
Matches: 45, Mismatches: 2, Indels: 6
0.85 0.04 0.11
Matches are distributed among these distances:
5 10 0.22
6 29 0.64
7 6 0.13
ACGTcount: A:0.88, C:0.12, G:0.00, T:0.00
Consensus pattern (6 bp):
AAAAAC
Found at i:53046 original size:18 final size:18
Alignment explanation
Indices: 53023--53077 Score: 94
Period size: 18 Copynumber: 3.1 Consensus size: 18
53013 CTTCTCTTCT
53023 AAAAAAAACAAAAACAAA
1 AAAAAAAACAAAAACAAA
53041 AAAAAAAACAAAAACAAA
1 AAAAAAAACAAAAACAAA
53059 AAACAAAAA-AAAAACAAA
1 AAA-AAAAACAAAAACAAA
53077 A
1 A
53078 CAAAGAAAAA
Statistics
Matches: 36, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
18 31 0.86
19 5 0.14
ACGTcount: A:0.89, C:0.11, G:0.00, T:0.00
Consensus pattern (18 bp):
AAAAAAAACAAAAACAAA
Found at i:53086 original size:18 final size:17
Alignment explanation
Indices: 53023--53088 Score: 87
Period size: 18 Copynumber: 3.6 Consensus size: 17
53013 CTTCTCTTCT
*
53023 AAAAAAAACAAAAACAA
1 AAAAAAAAAAAAAACAA
53040 AAAAAAAAACAAAAACAA
1 AAAAAAAAA-AAAAACAA
53058 AAAACAAAAAAAAAACAA
1 AAAA-AAAAAAAAAACAA
53076 AACAAAGAAAAAA
1 AA-AAA-AAAAAA
53089 GAGAGAAAAG
Statistics
Matches: 44, Mismatches: 1, Indels: 6
0.86 0.02 0.12
Matches are distributed among these distances:
17 8 0.18
18 23 0.52
19 13 0.30
ACGTcount: A:0.88, C:0.11, G:0.02, T:0.00
Consensus pattern (17 bp):
AAAAAAAAAAAAAACAA
Found at i:53086 original size:25 final size:25
Alignment explanation
Indices: 53026--53081 Score: 91
Period size: 24 Copynumber: 2.4 Consensus size: 25
53016 CTCTTCTAAA
53026 AAAAAC-AAAAACAAAAAAAAAAAC
1 AAAAACAAAAAACAAAAAAAAAAAC
53050 AAAAACAAAAAAC-AAAAAAAAAAC
1 AAAAACAAAAAACAAAAAAAAAAAC
53074 -AAAACAAA
1 AAAAACAAA
53082 GAAAAAAGAG
Statistics
Matches: 31, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
23 8 0.26
24 17 0.55
25 6 0.19
ACGTcount: A:0.88, C:0.12, G:0.00, T:0.00
Consensus pattern (25 bp):
AAAAACAAAAAACAAAAAAAAAAAC
Found at i:54241 original size:55 final size:55
Alignment explanation
Indices: 54158--54415 Score: 252
Period size: 55 Copynumber: 4.5 Consensus size: 55
54148 CTCCTTTCAC
*
54158 CCTTT-AGTCCTCAAAGAGCAGGACGCCTTTGAAAGCCCACACAAGTTGGTGGCA
1 CCTTTCAGTCCTCAAAGAGCAGGACGCCTTTTAAAGCCCACACAAGTTGGTGGCA
* * * *
54212 CCTTTCAATCCTCAAAGAGCAAGATGCCTTTTAAAGCCCATACAAGTTGGTGGCA
1 CCTTTCAGTCCTCAAAGAGCAGGACGCCTTTTAAAGCCCACACAAGTTGGTGGCA
* * * * *
54267 CCCTCCAGTCCTCAAAGAGTAGGACGCCTTTTTTCTTTTAAAGCCCACATAAGCTGGTGGCA
1 CCTTTCAGTCCTCAAAGAGCAGGACG-C------CTTTTAAAGCCCACACAAGTTGGTGGCA
* *
54329 CCTTT-AGTCCTCAAAGAGCAGGATGCCTTCTCTTTTTAAAGGCCACACAAGTTGGTGGCA
1 CCTTTCAGTCCTCAAAGAGCAGGA---C-GC-C-TTTTAAAGCCCACACAAGTTGGTGGCA
*
54389 -CTTCTTAGTCCTCAAAGAGCAGGACGC
1 CCTT-TCAGTCCTCAAAGAGCAGGACGC
54416 TCTCTCCTTT
Statistics
Matches: 167, Mismatches: 22, Indels: 27
0.77 0.10 0.12
Matches are distributed among these distances:
54 5 0.03
55 64 0.38
56 1 0.01
57 1 0.01
58 1 0.01
59 5 0.03
60 25 0.15
61 35 0.21
62 28 0.17
64 2 0.01
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (55 bp):
CCTTTCAGTCCTCAAAGAGCAGGACGCCTTTTAAAGCCCACACAAGTTGGTGGCA
Found at i:54401 original size:122 final size:117
Alignment explanation
Indices: 54184--54415 Score: 297
Period size: 122 Copynumber: 1.9 Consensus size: 117
54174 AGCAGGACGC
*
54184 CTTTGAAAGCCCACACAAGTTGGTGGCACCTTTCAATCCTCAAAGAGCAAGATGCCTTTTAAAGC
1 CTTTGAAAGCCCACACAAGCTGGTGGCACCTTTCAATCCTCAAAGAGCAAGATGCCTTTTAAAGC
* *
54249 CCATACAAGTTGGTGGCACCCTCCAGTCCTCAAAGAGTAGGACGCCTTTTTT
66 CCACACAAGTTGGTGGCACCCTCCAGTCCTCAAAGAGCAGGACGCCTTTTTT
* * * *
54301 CTTTTAAAGCCCACATAAGCTGGTGGCACCTTT-AGTCCTCAAAGAGCAGGATGCCTTCTCTTTT
1 CTTTGAAAGCCCACACAAGCTGGTGGCACCTTTCAATCCTCAAAGAGCAAGATG----C-C-TTT
* * *
54365 TAAAGGCCACACAAGTTGGTGGCA-CTTCTTAGTCCTCAAAGAGCAGGACGC
60 TAAAGCCCACACAAGTTGGTGGCACCCTC-CAGTCCTCAAAGAGCAGGACGC
54416 TCTCTCCTTT
Statistics
Matches: 98, Mismatches: 10, Indels: 9
0.84 0.09 0.08
Matches are distributed among these distances:
116 18 0.18
117 30 0.31
120 1 0.01
121 4 0.04
122 45 0.46
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.26
Consensus pattern (117 bp):
CTTTGAAAGCCCACACAAGCTGGTGGCACCTTTCAATCCTCAAAGAGCAAGATGCCTTTTAAAGC
CCACACAAGTTGGTGGCACCCTCCAGTCCTCAAAGAGCAGGACGCCTTTTTT
Found at i:54515 original size:93 final size:96
Alignment explanation
Indices: 54335--54518 Score: 252
Period size: 93 Copynumber: 1.9 Consensus size: 96
54325 GGCACCTTTA
* *
54335 GTCCTCAAAGAGCAGGATGCCTTCTCTTTTTAAAGGCCACACAAGTTGGTGGCACTTCTTAGTCC
1 GTCCTCAAAGAGCAGGATGCCTTCTC----TAAAGCCCACACAAGCTGGTGGCACTTCTTAGTCC
54400 TCAAAGAGCAGGACGCTCTCTCCTTTCGCCTTTTT
62 TCAAAGAGCAGGACGCTCTCTCCTTTCGCCTTTTT
54435 GTCCTCAAAGAGCAGGATGCCTT-TC-AAAGCCCACACAAGCTGGTGGCA-TT-TTCAGTCCTCA
1 GTCCTCAAAGAGCAGGATGCCTTCTCTAAAGCCCACACAAGCTGGTGGCACTTCTT-AGTCCTCA
*
54496 AAGAGCAGGATGC-CTTCTCCTTT
65 AAGAGCAGGACGCTC-TCTCCTTT
54519 TAAAGCCCAC
Statistics
Matches: 79, Mismatches: 3, Indels: 11
0.85 0.03 0.12
Matches are distributed among these distances:
92 3 0.04
93 30 0.38
94 21 0.27
99 2 0.03
100 23 0.29
ACGTcount: A:0.23, C:0.28, G:0.21, T:0.28
Consensus pattern (96 bp):
GTCCTCAAAGAGCAGGATGCCTTCTCTAAAGCCCACACAAGCTGGTGGCACTTCTTAGTCCTCAA
AGAGCAGGACGCTCTCTCCTTTCGCCTTTTT
Found at i:54584 original size:61 final size:61
Alignment explanation
Indices: 54455--54688 Score: 321
Period size: 61 Copynumber: 3.9 Consensus size: 61
54445 AGCAGGATGC
* * * *
54455 CTTTCAAAGCCCACACAAGCTGGTGGCA-TTTTCAGTCCTCAAAGAGCAGGATGCCTTCTC
1 CTTTTAAAGCCCACACAAGTTGGTGGCACTTTTCAGTCCTCAAAGAGCAGGATGCTTTCTT
*
54515 CTTTTAAAGCCCACACAAGTTGGTGGCACTTTTCAGTCCTCAAAAAGCAGGATGCTTTCTT
1 CTTTTAAAGCCCACACAAGTTGGTGGCACTTTTCAGTCCTCAAAGAGCAGGATGCTTTCTT
* * * * * *
54576 CTTGTAAAGCCCACACAAGTTGGTGGCACCTTTT-AGTCCTCAAAGGGAAGAACG-TTTTTT
1 CTTTTAAAGCCCACACAAGTTGGTGGCA-CTTTTCAGTCCTCAAAGAGCAGGATGCTTTCTT
*
54636 CTTTTTAAAGCCCACACGAGTTGGTGGCACTTTTCAGTCCTCAAAGAGCAGGA
1 C-TTTTAAAGCCCACACAAGTTGGTGGCACTTTTCAGTCCTCAAAGAGCAGGA
54689 CACACTTCCT
Statistics
Matches: 153, Mismatches: 17, Indels: 7
0.86 0.10 0.04
Matches are distributed among these distances:
60 37 0.24
61 111 0.73
62 5 0.03
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (61 bp):
CTTTTAAAGCCCACACAAGTTGGTGGCACTTTTCAGTCCTCAAAGAGCAGGATGCTTTCTT
Found at i:54592 original size:215 final size:216
Alignment explanation
Indices: 54220--54620 Score: 587
Period size: 215 Copynumber: 1.9 Consensus size: 216
54210 CACCTTTCAA
* * *
54220 TCCTCAAAGAGCAAGATGCCTTTTAAAGCCCATACAAGTTGGTGGCACCCTCCAGTCCTCAAAGA
1 TCCTCAAAGAGCAAGATGCCTTTCAAAGCCCACACAAGCTGGTGGCACCCTCCAGTCCTCAAAGA
* * * * *
54285 GTAGGACGCCTTTTTTCTTTTAAAGCCCACATAAGCTGGTGGCACCTTTAGTCCTCAAAGAGCAG
66 GCAGGACGCCTTTCTCCTTTTAAAGCCCACACAAGCTGGTGGCACCTTTAGTCCTCAAAAAGCAG
*
54350 GATGCCTTCTCTTTTTAAAGGCCACACAAGTTGGTGGCA-CTTCTTAGTCCTCAAAGAGCAGGAC
131 GATGCCTTCTCTTTTTAAAGCCCACACAAGTTGGTGGCACCTT-TTAGTCCTCAAAGAGCAGGAC
54414 GCTCTCTCCTTTCGCCTTTTTG
195 GCTCTCTCCTTTCGCCTTTTTG
* ** *
54436 TCCTCAAAGAGCAGGATGCCTTTCAAAGCCCACACAAGCTGGTGGCA-TTTTCAGTCCTCAAAGA
1 TCCTCAAAGAGCAAGATGCCTTTCAAAGCCCACACAAGCTGGTGGCACCCTCCAGTCCTCAAAGA
* * *
54500 GCAGGATGCC-TTCTCCTTTTAAAGCCCACACAAGTTGGTGGCACTTTTCAGTCCTCAAAAAGCA
66 GCAGGACGCCTTTCTCCTTTTAAAGCCCACACAAGCTGGTGGCACCTTT-AGTCCTCAAAAAGCA
54564 GGATG-CTT-TCTTCTTGTAAAGCCCACACAAGTTGGTGGCACCTTTTAGTCCTCAAAG
130 GGATGCCTTCTCTT-TT-TAAAGCCCACACAAGTTGGTGGCACCTTTTAGTCCTCAAAG
54621 GGAAGAACGT
Statistics
Matches: 165, Mismatches: 16, Indels: 9
0.87 0.08 0.05
Matches are distributed among these distances:
213 4 0.02
214 38 0.23
215 77 0.47
216 46 0.28
ACGTcount: A:0.25, C:0.27, G:0.20, T:0.28
Consensus pattern (216 bp):
TCCTCAAAGAGCAAGATGCCTTTCAAAGCCCACACAAGCTGGTGGCACCCTCCAGTCCTCAAAGA
GCAGGACGCCTTTCTCCTTTTAAAGCCCACACAAGCTGGTGGCACCTTTAGTCCTCAAAAAGCAG
GATGCCTTCTCTTTTTAAAGCCCACACAAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACG
CTCTCTCCTTTCGCCTTTTTG
Found at i:54660 original size:276 final size:271
Alignment explanation
Indices: 54064--54689 Score: 830
Period size: 276 Copynumber: 2.3 Consensus size: 271
54054 TCCACTTTTC
* * * * *
54064 AGTCCTCAAAGAGCAGGATGCCTTTTCCTTTT-AAGCCCATACAAGTTGGTGGCACCTTC-TAGT
1 AGTCCTCAAAGAGAAGAACGCCTTTTCTTTTTAAAGCCCACACAAGTTGGTGGCA-CTTCTTAGT
*
54127 CCTCAAAGAGCAGGACGCTCTCTCCTTTCACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTGAAA
65 CCTCAAAGAGCAGGACGCTCTCTCCTTTCACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTCAAA
* *
54192 GCCCACACAAGTTGGTGGCACCTTTCAATCCTCAAAGAGCAAGATGCCTTTTAAAGCCCATACAA
130 GCCCACACAAGCTGGTGGCACCTTTCAATCCTCAAAGAGCAAGATGCCTTTTAAAGCCCACACAA
* * * * *
54257 GTTGGTGGCACCCTCCAGTCCTCAAAGAGTAGGACGCCTTTTTTCTTTTAAAGCCCACATAAGCT
195 GTTGGTGGCACCCTCCAGTCCTCAAAAAGCAGGACGCCTTTCTTCTTGTAAAGCCCACACAAGCT
54322 GGTGGCACCTTT
260 GGTGGCACCTTT
* * * * *
54334 AGTCCTCAAAGAGCAGGATGCCTTCTCTTTTTAAAGGCCACACAAGTTGGTGGCACTTCTTAGTC
1 AGTCCTCAAAGAGAAGAACGCCTTTTCTTTTTAAAGCCCACACAAGTTGGTGGCACTTCTTAGTC
* * * *
54399 CTCAAAGAGCAGGACGCTCTCTCCTTTCGCCTTTTTGTCCTCAAAGAGCAGGATGCCTTTCAAAG
66 CTCAAAGAGCAGGACGCTCTCTCCTTTCACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTCAAAG
* * *
54464 CCCACACAAGCTGGTGGCA-TTTTCAGTCCTCAAAGAGCAGGATGCCTTCTCCTTTTAAAGCCCA
131 CCCACACAAGCTGGTGGCACCTTTCAATCCTCAAAGAGCAAGATG------CCTTTTAAAGCCCA
** * *
54528 CACAAGTTGGTGGCACTTTTCAGTCCTCAAAAAGCAGGATG-CTTTCTTCTTGTAAAGCCCACAC
190 CACAAGTTGGTGGCACCCTCCAGTCCTCAAAAAGCAGGACGCCTTTCTTCTTGTAAAGCCCACAC
*
54592 AAGTTGGTGGCACCTTTT
255 AAGCTGGTGGCACC-TTT
* ** *
54610 AGTCCTCAAAGGGAAGAACGTTTTTTCTTTTTAAAGCCCACACGAGTTGGTGGCACTT-TTCAGT
1 AGTCCTCAAAGAGAAGAACGCCTTTTCTTTTTAAAGCCCACACAAGTTGGTGGCACTTCTT-AGT
54674 CCTCAAAGAGCAGGAC
65 CCTCAAAGAGCAGGAC
54690 ACACTTCCTT
Statistics
Matches: 313, Mismatches: 33, Indels: 14
0.87 0.09 0.04
Matches are distributed among these distances:
270 56 0.18
271 103 0.33
275 35 0.11
276 119 0.38
ACGTcount: A:0.25, C:0.27, G:0.20, T:0.27
Consensus pattern (271 bp):
AGTCCTCAAAGAGAAGAACGCCTTTTCTTTTTAAAGCCCACACAAGTTGGTGGCACTTCTTAGTC
CTCAAAGAGCAGGACGCTCTCTCCTTTCACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTCAAAG
CCCACACAAGCTGGTGGCACCTTTCAATCCTCAAAGAGCAAGATGCCTTTTAAAGCCCACACAAG
TTGGTGGCACCCTCCAGTCCTCAAAAAGCAGGACGCCTTTCTTCTTGTAAAGCCCACACAAGCTG
GTGGCACCTTT
Found at i:55696 original size:20 final size:19
Alignment explanation
Indices: 55671--55742 Score: 90
Period size: 20 Copynumber: 3.6 Consensus size: 19
55661 TACCCAGATA
55671 TATCGATACATTTTGCATTG
1 TATCGATACATTTT-CATTG
*
55691 TATCGATACATTGCTCATTG
1 TATCGATACATT-TTCATTG
*
55711 TATCGATACATTTTACAATG
1 TATCGATACATTTT-CATTG
*
55731 TATCAATACATT
1 TATCGATACATT
55743 CAGGCATTTT
Statistics
Matches: 46, Mismatches: 4, Indels: 4
0.85 0.07 0.07
Matches are distributed among these distances:
19 1 0.02
20 44 0.96
21 1 0.02
ACGTcount: A:0.31, C:0.17, G:0.11, T:0.42
Consensus pattern (19 bp):
TATCGATACATTTTCATTG
Found at i:58091 original size:51 final size:51
Alignment explanation
Indices: 58026--58204 Score: 236
Period size: 51 Copynumber: 3.5 Consensus size: 51
58016 AAATTTCTAG
* * *
58026 ATTTTTCAT-CTCGGGGATACTCCAA-TCCCGGTTTCATTTCCAAAACATCA
1 ATTTTTCATAATCGGGGATACTCCAACT-CCGATTTTATTTCCAAAACATCA
** * * *
58076 ATTTTTTTTAATCGGGGATACTCCAACTCCGATTTTATTTCTAAAACACCT
1 ATTTTTCATAATCGGGGATACTCCAACTCCGATTTTATTTCCAAAACATCA
** *
58127 ATTTCCCATAATCGGGGATACTCCAACTCCGATTTTATTTCCAAAACATCG
1 ATTTTTCATAATCGGGGATACTCCAACTCCGATTTTATTTCCAAAACATCA
58178 ATTTTTCATAATCGGGGATACTCCAAC
1 ATTTTTCATAATCGGGGATACTCCAAC
58205 CCTGTTATTT
Statistics
Matches: 110, Mismatches: 17, Indels: 3
0.85 0.13 0.02
Matches are distributed among these distances:
50 7 0.06
51 102 0.93
52 1 0.01
ACGTcount: A:0.28, C:0.25, G:0.12, T:0.35
Consensus pattern (51 bp):
ATTTTTCATAATCGGGGATACTCCAACTCCGATTTTATTTCCAAAACATCA
Found at i:58303 original size:51 final size:51
Alignment explanation
Indices: 58219--58338 Score: 134
Period size: 51 Copynumber: 2.4 Consensus size: 51
58209 TTATTTTCGA
* * * *
58219 GGGGATACTCCAATCCCGATTTTTTTTCTAAAACACCAATTCTCCATAATC
1 GGGGATACTCCAATCCCGATTTTATGTCCAAAACACCAATTCTCCACAATC
* * * *
58270 GGGGATATTCCAA-CTCCGATTTTATGTCCAAAACACTAATTTTTCACAATC
1 GGGGATACTCCAATC-CCGATTTTATGTCCAAAACACCAATTCTCCACAATC
* *
58321 GGGGATACTTCAACCCCG
1 GGGGATACTCCAATCCCG
58339 TTATTTCATC
Statistics
Matches: 57, Mismatches: 10, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
50 1 0.02
51 55 0.96
52 1 0.02
ACGTcount: A:0.29, C:0.27, G:0.13, T:0.31
Consensus pattern (51 bp):
GGGGATACTCCAATCCCGATTTTATGTCCAAAACACCAATTCTCCACAATC
Found at i:58322 original size:130 final size:130
Alignment explanation
Indices: 58089--58344 Score: 392
Period size: 130 Copynumber: 2.0 Consensus size: 130
58079 TTTTTTAATC
*
58089 GGGGATACTCCAACTCCGATTTTATTTCTAAAACACCTATTTCCCATAATCGGGGATACTCCAAC
1 GGGGATACTCCAACTCCGATTTTATTTCTAAAACACCAATTTCCCATAATCGGGGATACTCCAAC
* * * *
58154 TCCGATTTTATTTCCAAAACATCGATTTTTCATAATCGGGGATACTCCAACCCTGTTATTTTCGA
66 TCCGATTTTATGTCCAAAACATCAATTTTTCACAATCGGGGATACTCCAACCCCGTTATTTTCGA
* *
58219 GGGGATACTCCAA-TCCCGATTTTTTTTCTAAAACACCAA-TTCTCCATAATCGGGGATATTCCA
1 GGGGATACTCCAACT-CCGATTTTATTTCTAAAACACCAATTTC-CCATAATCGGGGATACTCCA
*
58282 ACTCCGATTTTATGTCCAAAACA-CTAATTTTTCACAATCGGGGATACTTCAACCCCGTTATTT
64 ACTCCGATTTTATGTCCAAAACATC-AATTTTTCACAATCGGGGATACTCCAACCCCGTTATTT
58345 CATCGGGGAT
Statistics
Matches: 115, Mismatches: 8, Indels: 6
0.89 0.06 0.05
Matches are distributed among these distances:
129 5 0.04
130 110 0.96
ACGTcount: A:0.28, C:0.25, G:0.13, T:0.34
Consensus pattern (130 bp):
GGGGATACTCCAACTCCGATTTTATTTCTAAAACACCAATTTCCCATAATCGGGGATACTCCAAC
TCCGATTTTATGTCCAAAACATCAATTTTTCACAATCGGGGATACTCCAACCCCGTTATTTTCGA
Found at i:58365 original size:27 final size:28
Alignment explanation
Indices: 58318--58393 Score: 95
Period size: 27 Copynumber: 2.8 Consensus size: 28
58308 ATTTTTCACA
58318 ATCGGGGATACTTCAACCCCGTTATTTC
1 ATCGGGGATACTTCAACCCCGTTATTTC
*
58346 ATCGGGGATGC-TCAACCCCGTTATTT-
1 ATCGGGGATACTTCAACCCCGTTATTTC
*
58372 -TCGAGGGGATACTCCAACCCCG
1 ATC--GGGGATACTTCAACCCCG
58394 GCTTTATTTC
Statistics
Matches: 42, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
25 2 0.05
27 22 0.52
28 18 0.43
ACGTcount: A:0.21, C:0.30, G:0.22, T:0.26
Consensus pattern (28 bp):
ATCGGGGATACTTCAACCCCGTTATTTC
Found at i:58441 original size:51 final size:51
Alignment explanation
Indices: 58377--58494 Score: 164
Period size: 51 Copynumber: 2.3 Consensus size: 51
58367 TATTTTCGAG
*
58377 GGGATACTCCAACCCCGGCTTTATTTCCAAAATATTGATTTCTCACAATCA
1 GGGATACTCCAACCCCGGCCTTATTTCCAAAATATTGATTTCTCACAATCA
* * * * * **
58428 GGGATACTTCAACCCTGGCCTTATTTCTAAAATATTGATTTCTTATAATTG
1 GGGATACTCCAACCCCGGCCTTATTTCCAAAATATTGATTTCTCACAATCA
58479 GGGATACTCCAACCCC
1 GGGATACTCCAACCCC
58495 ATTATTTTTA
Statistics
Matches: 57, Mismatches: 10, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
51 57 1.00
ACGTcount: A:0.28, C:0.25, G:0.14, T:0.33
Consensus pattern (51 bp):
GGGATACTCCAACCCCGGCCTTATTTCCAAAATATTGATTTCTCACAATCA
Found at i:58680 original size:130 final size:129
Alignment explanation
Indices: 58358--58681 Score: 343
Period size: 130 Copynumber: 2.5 Consensus size: 129
58348 CGGGGATGCT
* * *
58358 CAACCCCGTTATTTTCGAGGGGATACTCCAACCCCGGCTTTATTTCCAAAATATTGATTTCTCAC
1 CAACCCCATTATTTTCGAGGGGATACTCCAACCCC-GTTTTATTTCCAAAATATTAATTTCTCAC
* * * * *
58423 AATCAGGGATACTTCAACCCTGGCCTTATTTCTAAAATATTGATTTCTTATAATTGGGGATACTC
65 AATCAGGGACACTTCAACCCTGGCCTTATTTCTAAAATATCGATTTCTTACAATAGGGGATACCC
* * * * * * **
58488 CAACCCCATTATTTT-TATGGGGATACTCAAATCCAGATTTTATTTTTC-AAACATCGATTT-TC
1 CAACCCCATTATTTTCGA-GGGGATACTCCAACCCCG-TTTTA-TTTCCAAAATATTAATTTCTC
* * *
58550 TATAATCAGGGACACTTCAACCCTTGCCTTATTTCT-AAATAATCGATTT-TTCACAGTAGGGGA
63 -ACAATCAGGGACACTTCAACCCTGGCCTTATTTCTAAAAT-ATCGATTTCTT-ACAATAGGGGA
58613 TACCC
125 TACCC
* *
58618 CAACCCCATTATTTTCGAGGGGATACTCCGACCCCGTTATTATCTCCAAAATATTAAATTTCTC
1 CAACCCCATTATTTTCGAGGGGATACTCCAACCCCGTT-TTATTTCCAAAATATT-AATTTCTC
58682 GTCGGAAGAT
Statistics
Matches: 156, Mismatches: 27, Indels: 20
0.77 0.13 0.10
Matches are distributed among these distances:
129 15 0.10
130 130 0.83
131 9 0.06
132 2 0.01
ACGTcount: A:0.28, C:0.24, G:0.13, T:0.35
Consensus pattern (129 bp):
CAACCCCATTATTTTCGAGGGGATACTCCAACCCCGTTTTATTTCCAAAATATTAATTTCTCACA
ATCAGGGACACTTCAACCCTGGCCTTATTTCTAAAATATCGATTTCTTACAATAGGGGATACCC
Found at i:60563 original size:18 final size:18
Alignment explanation
Indices: 60526--60566 Score: 55
Period size: 18 Copynumber: 2.3 Consensus size: 18
60516 TACCTTCACC
* **
60526 AAAAATTGTAGCAACCAA
1 AAAAATTCTAGCAAAAAA
60544 AAAAATTCTAGCAAAAAA
1 AAAAATTCTAGCAAAAAA
60562 AAAAA
1 AAAAA
60567 AAAAAGAAAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.66, C:0.12, G:0.07, T:0.15
Consensus pattern (18 bp):
AAAAATTCTAGCAAAAAA
Found at i:61708 original size:16 final size:17
Alignment explanation
Indices: 61677--61710 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
61667 CATGGAGCAA
61677 AAAATTTAATGAAAAAT
1 AAAATTTAATGAAAAAT
*
61694 AAAATTTTA-GAAAAAT
1 AAAATTTAATGAAAAAT
61710 A
1 A
61711 GTGACTAAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 8 0.50
17 8 0.50
ACGTcount: A:0.65, C:0.00, G:0.06, T:0.29
Consensus pattern (17 bp):
AAAATTTAATGAAAAAT
Found at i:65221 original size:27 final size:27
Alignment explanation
Indices: 65183--65234 Score: 63
Period size: 27 Copynumber: 1.9 Consensus size: 27
65173 GGGAAAATGG
*
65183 TTAAAAAGGC-AATTAAGAGTGGAAAGT
1 TTAAAAAGGCAAAATAAG-GTGGAAAGT
65210 TTAACAAA-GCAAAATAAGGTGGAAA
1 TTAA-AAAGGCAAAATAAGGTGGAAA
65235 AAGTCTAAGT
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
27 13 0.59
28 9 0.41
ACGTcount: A:0.52, C:0.06, G:0.23, T:0.19
Consensus pattern (27 bp):
TTAAAAAGGCAAAATAAGGTGGAAAGT
Found at i:68364 original size:51 final size:51
Alignment explanation
Indices: 68288--68403 Score: 153
Period size: 51 Copynumber: 2.3 Consensus size: 51
68278 AGATAATGGA
68288 GTTGGAGTATCCCCGATTATAAAAAATCGATATTTT-GAAAATAAAACTGGG
1 GTTGGAGTATCCCCGATTATAAAAAATCGATATTTTAG-AAATAAAACTGGG
* * * * * * *
68339 GTTGGAGTATCCCTGATTGTGAAAAATTGGTGTTTTAGAAATAAGACTGGG
1 GTTGGAGTATCCCCGATTATAAAAAATCGATATTTTAGAAATAAAACTGGG
68390 GTTGGAGTATCCCC
1 GTTGGAGTATCCCC
68404 TTGGAAATAA
Statistics
Matches: 56, Mismatches: 8, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
51 55 0.98
52 1 0.02
ACGTcount: A:0.32, C:0.12, G:0.25, T:0.31
Consensus pattern (51 bp):
GTTGGAGTATCCCCGATTATAAAAAATCGATATTTTAGAAATAAAACTGGG
Found at i:68443 original size:130 final size:128
Alignment explanation
Indices: 68239--68478 Score: 338
Period size: 130 Copynumber: 1.9 Consensus size: 128
68229 GGAAAATCAA
* * *
68239 TGTTTTAGAAATAAAATTGGGGTTGGAGTATCCCCTAGGAGATAATGGAGTTGGAGTATCCCCGA
1 TGTTTTAGAAATAAAACTGGGGTTGGAGTATCCCCTAGGAAATAACGGAGTTGGAGTATCCCCGA
* *
68304 TTATAAAAAATCGATATTTTGAAAATAAAACTGGGGTTGGAGTATCCCTGATTGTGAAAAATTGG
66 TTATAAAAAATCGAT-TTTAG-AAATAAAACTGGAGTTGGAGTATCCCTGATTGTGAAAAATTGG
* * *
68369 TGTTTTAGAAATAAGACTGGGGTTGGAGTATCCCCTTGGAAATAAC-GAGGTTGGAGTATCCTCG
1 TGTTTTAGAAATAAAACTGGGGTTGGAGTATCCCCTAGGAAATAACGGA-GTTGGAGTATCCCCG
* * * *
68433 ATTGTGAAAAATTGGTTTTAGAAATAAAACTGGAGTTGGAGTATCC
65 ATTATAAAAAATCGATTTTAGAAATAAAACTGGAGTTGGAGTATCC
68479 TCTTGGAAAT
Statistics
Matches: 97, Mismatches: 12, Indels: 4
0.86 0.11 0.04
Matches are distributed among these distances:
128 24 0.25
129 6 0.06
130 67 0.69
ACGTcount: A:0.33, C:0.10, G:0.26, T:0.31
Consensus pattern (128 bp):
TGTTTTAGAAATAAAACTGGGGTTGGAGTATCCCCTAGGAAATAACGGAGTTGGAGTATCCCCGA
TTATAAAAAATCGATTTTAGAAATAAAACTGGAGTTGGAGTATCCCTGATTGTGAAAAATTGG
Found at i:68578 original size:28 final size:28
Alignment explanation
Indices: 68544--68617 Score: 87
Period size: 28 Copynumber: 2.6 Consensus size: 28
68534 AATAAAACCG
*
68544 GGGTTGGAGCATTCCCGTA-GAAATAACA
1 GGGTTGGAGCATCCCCG-AGGAAATAACA
* **
68572 GGGTTGGAGTATCCCCGAGGAAATAATG
1 GGGTTGGAGCATCCCCGAGGAAATAACA
*
68600 GGGTTGGAGTATCCCCGA
1 GGGTTGGAGCATCCCCGA
68618 TTATGAAAAA
Statistics
Matches: 41, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
27 1 0.02
28 40 0.98
ACGTcount: A:0.27, C:0.18, G:0.34, T:0.22
Consensus pattern (28 bp):
GGGTTGGAGCATCCCCGAGGAAATAACA
Found at i:68583 original size:107 final size:107
Alignment explanation
Indices: 68467--68659 Score: 305
Period size: 107 Copynumber: 1.8 Consensus size: 107
68457 TAAAACTGGA
* ** * *
68467 GTTGGAGTATCCTCTTGGAAATAACAGGATTAGAGTATCCCCGATTGTGGAAAATTGGTGTTGTG
1 GTTGGAGTATCCCCGAGGAAATAACAGGATTAGAGTATCCCCGATTATGAAAAATTGGTGTTGTG
68532 GAAATAAAACCGGGGTTGGAGCATTCCCGTAGAAATAACAGG
66 GAAATAAAACCGGGGTTGGAGCATTCCCGTAGAAATAACAGG
** * *
68574 GTTGGAGTATCCCCGAGGAAATAATGGGGTTGGAGTATCCCCGATTATGAAAAATTGGTGTTGTG
1 GTTGGAGTATCCCCGAGGAAATAACAGGATTAGAGTATCCCCGATTATGAAAAATTGGTGTTGTG
68639 GAAATAAAACCGGGGTTGGAG
66 GAAATAAAACCGGGGTTGGAG
68660 TATCCCTGAT
Statistics
Matches: 77, Mismatches: 9, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
107 77 1.00
ACGTcount: A:0.30, C:0.13, G:0.31, T:0.26
Consensus pattern (107 bp):
GTTGGAGTATCCCCGAGGAAATAACAGGATTAGAGTATCCCCGATTATGAAAAATTGGTGTTGTG
GAAATAAAACCGGGGTTGGAGCATTCCCGTAGAAATAACAGG
Found at i:68587 original size:79 final size:78
Alignment explanation
Indices: 68337--68589 Score: 332
Period size: 79 Copynumber: 3.2 Consensus size: 78
68327 AATAAAACTG
* * *
68337 GGGTTGGAGTATCCCTGATTGTGAAAAATTGGTGTTTTAGAAATAAGACTGGGGTTGGAGTATCC
1 GGGTTGGAGTATCCCCGATTGTGAAAAATTGGTG-TTTAGAAATAAAACTGGGGTTGGAGTATTC
68402 CCTTGGAAATAAC-
65 CCTTGGAAATAACA
* *
68415 GAGGTTGGAGTATCCTCGATTGTGAAAAATTGGT-TTTAGAAATAAAACTGGAGTTGGAGTA-TC
1 G-GGTTGGAGTATCCCCGATTGTGAAAAATTGGTGTTTAGAAATAAAACTGGGGTTGGAGTATTC
68478 CTCTTGGAAATAACA
65 C-CTTGGAAATAACA
* * * * * *
68493 GGATTAGAGTATCCCCGATTGTGGAAAATTGGTGTTGTGGAAATAAAACCGGGGTTGGAGCATTC
1 GGGTTGGAGTATCCCCGATTGTGAAAAATTGGTGTT-TAGAAATAAAACTGGGGTTGGAGTATTC
* *
68558 CCGTAGAAATAACA
65 CCTTGGAAATAACA
68572 GGGTTGGAGTATCCCCGA
1 GGGTTGGAGTATCCCCGA
68590 GGAAATAATG
Statistics
Matches: 152, Mismatches: 17, Indels: 11
0.84 0.09 0.06
Matches are distributed among these distances:
76 2 0.01
77 65 0.43
78 4 0.03
79 78 0.51
80 3 0.02
ACGTcount: A:0.30, C:0.13, G:0.29, T:0.28
Consensus pattern (78 bp):
GGGTTGGAGTATCCCCGATTGTGAAAAATTGGTGTTTAGAAATAAAACTGGGGTTGGAGTATTCC
CTTGGAAATAACA
Found at i:68659 original size:51 final size:51
Alignment explanation
Indices: 68599--68717 Score: 184
Period size: 51 Copynumber: 2.3 Consensus size: 51
68589 AGGAAATAAT
*
68599 GGGGTTGGAGTATCCCCGATTATGAAAAATTGGTGTTGTGGAAATAAAACC
1 GGGGTTGGAGTATCCCCGATTATGAAAAATTGATGTTGTGGAAATAAAACC
* * * *
68650 GGGGTTGGAGTATCCCTGATTGTGAAAAATTGATGTTTTGGGAATAAAACC
1 GGGGTTGGAGTATCCCCGATTATGAAAAATTGATGTTGTGGAAATAAAACC
*
68701 GGGGTTAGAGTATCCCC
1 GGGGTTGGAGTATCCCC
68718 TTAGAAATAA
Statistics
Matches: 61, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
51 61 1.00
ACGTcount: A:0.29, C:0.13, G:0.30, T:0.29
Consensus pattern (51 bp):
GGGGTTGGAGTATCCCCGATTATGAAAAATTGATGTTGTGGAAATAAAACC
Found at i:73304 original size:20 final size:21
Alignment explanation
Indices: 73261--73307 Score: 69
Period size: 20 Copynumber: 2.3 Consensus size: 21
73251 TTTCTACAAT
**
73261 ATGTATCGATACAATAAGTTA
1 ATGTATCGATACAATAAGGGA
73282 ATGTATCGATAC-ATAAGGGA
1 ATGTATCGATACAATAAGGGA
73302 ATGTAT
1 ATGTAT
73308 TAATACATGC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
20 12 0.50
21 12 0.50
ACGTcount: A:0.40, C:0.09, G:0.19, T:0.32
Consensus pattern (21 bp):
ATGTATCGATACAATAAGGGA
Found at i:74237 original size:19 final size:19
Alignment explanation
Indices: 74213--74285 Score: 76
Period size: 20 Copynumber: 3.7 Consensus size: 19
74203 TTTTCATAAT
*
74213 TTGTATTAATACATTTTCA
1 TTGTATCAATACATTTTCA
*
74232 TTGTATCGATACATTGTTCA
1 TTGTATCAATACATT-TTCA
*
74252 TTATATCAATACATTTCTCGA
1 TTGTATCAATACATTT-TC-A
*
74273 -TGTATCGATACAT
1 TTGTATCAATACAT
74286 CCAGGCCTTT
Statistics
Matches: 45, Mismatches: 6, Indels: 5
0.80 0.11 0.09
Matches are distributed among these distances:
19 14 0.31
20 30 0.67
21 1 0.02
ACGTcount: A:0.30, C:0.15, G:0.10, T:0.45
Consensus pattern (19 bp):
TTGTATCAATACATTTTCA
Found at i:74253 original size:20 final size:19
Alignment explanation
Indices: 74221--74285 Score: 78
Period size: 20 Copynumber: 3.3 Consensus size: 19
74211 ATTTGTATTA
74221 ATACATTTTCATTGTATCG
1 ATACATTTTCATTGTATCG
* *
74240 ATACATTGTTCATTATATCA
1 ATACATT-TTCATTGTATCG
74260 ATACATTTCTCGA-TGTATCG
1 ATACATTT-TC-ATTGTATCG
74280 ATACAT
1 ATACAT
74286 CCAGGCCTTT
Statistics
Matches: 39, Mismatches: 4, Indels: 5
0.81 0.08 0.10
Matches are distributed among these distances:
19 8 0.21
20 30 0.77
21 1 0.03
ACGTcount: A:0.31, C:0.17, G:0.09, T:0.43
Consensus pattern (19 bp):
ATACATTTTCATTGTATCG
Found at i:76772 original size:79 final size:78
Alignment explanation
Indices: 76641--76823 Score: 224
Period size: 79 Copynumber: 2.3 Consensus size: 78
76631 ATTCATGTTT
* *
76641 TTATTTCAGAGGGGATACTCCAACCCCGATTTTATTCTCAAAACACTAATTTTTCACAATCGGGG
1 TTATTTCA-AGGGGATACTCCAACCCCGATTTTATTCTCAAAACACCAATTTTCCACAATCGGGG
76706 ATACTCCAACCCCA
65 ATACTCCAACCCCA
* * * * *
76720 TTATTTCCAAGGAGATACTCCAACCCTGGTTTTATT-TCCATAACACCAATTTTCCACAATTGGG
1 TTATTT-CAAGGGGATACTCCAACCCCGATTTTATTCT-CAAAACACCAATTTTCCACAATCGGG
***
76784 GATACTCCAACCTTG
64 GATACTCCAACCCCA
*
76799 TTATTTTCTAGGGGATACTCCAACC
1 TTA-TTTCAAGGGGATACTCCAACC
76824 TCGTTATTTC
Statistics
Matches: 89, Mismatches: 12, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
78 1 0.01
79 83 0.93
80 5 0.06
ACGTcount: A:0.28, C:0.27, G:0.13, T:0.32
Consensus pattern (78 bp):
TTATTTCAAGGGGATACTCCAACCCCGATTTTATTCTCAAAACACCAATTTTCCACAATCGGGGA
TACTCCAACCCCA
Found at i:76813 original size:28 final size:28
Alignment explanation
Indices: 76781--76851 Score: 106
Period size: 28 Copynumber: 2.5 Consensus size: 28
76771 TTCCACAATT
* * *
76781 GGGGATACTCCAACCTTGTTATTTTCTA
1 GGGGATACTCCAACCTCGTTATTTCCAA
76809 GGGGATACTCCAACCTCGTTATTTCCAA
1 GGGGATACTCCAACCTCGTTATTTCCAA
*
76837 GGGGATACTCTAACC
1 GGGGATACTCCAACC
76852 CCGGTTTTAT
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
28 39 1.00
ACGTcount: A:0.24, C:0.25, G:0.20, T:0.31
Consensus pattern (28 bp):
GGGGATACTCCAACCTCGTTATTTCCAA
Found at i:76895 original size:79 final size:77
Alignment explanation
Indices: 76812--77057 Score: 221
Period size: 79 Copynumber: 3.2 Consensus size: 77
76802 TTTTCTAGGG
* *
76812 GATACTCCAACCTCGTTATTTCCAAGGGGATACTCTAACCCCGGTTTTATTTCCACAACACCAAA
1 GATACTCCAACCCCGTTATTTCCAAGGGGATACTCAAACCCCGGTTTTATTTCCA-AACACCAAA
*
76877 TTTTCATAATCAGA
65 TTTTCACAATC-GA
** *** * * * *
76891 GATACTCCAACCCCAATATTTTTGAGGGGATACTCCAACCTCAGTTTTATTTCCAAA-A-CTAAT
1 GATACTCCAACCCCGTTATTTCCAAGGGGATACTCAAACCCCGGTTTTATTTCCAAACACCAAAT
*
76954 TTTCACAATCGGG
66 TTTCACAATC-GA
* * * * * *
76967 GATATTCAAACCCCGTTATTTCTGAA--GGATACTCAAACCCCGGTCTTATTTTCAAAACACTAA
1 GATACTCCAACCCCGTTATTTC-CAAGGGGATACTCAAACCCCGGTTTTA-TTTCCAAACACCAA
* *
77030 TTTTTCACATTCGCA
64 ATTTTCACAATCG-A
77045 GATACTCCAACCC
1 GATACTCCAACCC
77058 TGGTTTTATT
Statistics
Matches: 130, Mismatches: 32, Indels: 11
0.75 0.18 0.06
Matches are distributed among these distances:
75 18 0.14
76 38 0.29
77 4 0.03
78 24 0.18
79 46 0.35
ACGTcount: A:0.30, C:0.27, G:0.11, T:0.31
Consensus pattern (77 bp):
GATACTCCAACCCCGTTATTTCCAAGGGGATACTCAAACCCCGGTTTTATTTCCAAACACCAAAT
TTTCACAATCGA
Found at i:76931 original size:107 final size:107
Alignment explanation
Indices: 76702--76946 Score: 305
Period size: 107 Copynumber: 2.3 Consensus size: 107
76692 TTTCACAATC
* * * *
76702 GGGGATACTCCAACCCCATTATTTCCAAGGAGATACTCCAACCCTGGTTTTATTTCCATAACACC
1 GGGGATACTCCAACCTCGTTATTTCCAAGGAGATACTCCAACCCCGGTTTTATTTCCACAACACC
** * ****
76767 AATTTTCCACAATTGGGGATACTCCAACCTTGTTATTTTCTA
66 AATTTTCCACAATCAGAGATACTCCAACCCCAATATTTTCTA
* *
76809 GGGGATACTCCAACCTCGTTATTTCCAAGGGGATACTCTAACCCCGGTTTTATTTCCACAACACC
1 GGGGATACTCCAACCTCGTTATTTCCAAGGAGATACTCCAACCCCGGTTTTATTTCCACAACACC
*
76874 AAATTTT-CATAATCAGAGATACTCCAACCCCAATATTTT-TGA
66 -AATTTTCCACAATCAGAGATACTCCAACCCCAATATTTTCT-A
76916 GGGGATACTCCAACCTCAGTTTTATTTCCAA
1 GGGGATACTCCAACCTC-G--TTATTTCCAA
76947 AACTAATTTT
Statistics
Matches: 119, Mismatches: 14, Indels: 7
0.85 0.10 0.05
Matches are distributed among these distances:
106 1 0.01
107 101 0.85
108 7 0.06
110 10 0.08
ACGTcount: A:0.28, C:0.27, G:0.13, T:0.31
Consensus pattern (107 bp):
GGGGATACTCCAACCTCGTTATTTCCAAGGAGATACTCCAACCCCGGTTTTATTTCCACAACACC
AATTTTCCACAATCAGAGATACTCCAACCCCAATATTTTCTA
Found at i:77023 original size:75 final size:77
Alignment explanation
Indices: 76839--77057 Score: 210
Period size: 76 Copynumber: 2.8 Consensus size: 77
76829 ATTTCCAAGG
* * * *
76839 GGATACTCTAACCCCGGTTTTATTTCCACAACACCAAATTTTCATAATCAGAGATACTCCAACCC
1 GGATACTCAAACCCCGGTTTTATTTCCA-AACA-CTAATTTTCACAATCAGAGATACTCAAACCC
* *
76904 CAATATTTTTGAGG
64 CAATATTTCTGAGA
* * * * * * *
76918 GGATACTCCAACCTCAGTTTTATTTCCAAA-ACTAATTTTCACAATCGGGGATATTCAAACCCCG
1 GGATACTCAAACCCCGGTTTTATTTCCAAACACTAATTTTCACAATCAGAGATACTCAAACCCCA
*
76982 TTATTTCTGA-A
66 ATATTTCTGAGA
* * * *
76993 GGATACTCAAACCCCGGTCTTATTTTCAAAACACTAATTTTTCACATTC-GCAGATACTCCAACC
1 GGATACTCAAACCCCGGTTTTA-TTTCCAAACACTAA-TTTTCACAATCAG-AGATACTCAAACC
77057 C
63 C
77058 TGGTTTTATT
Statistics
Matches: 114, Mismatches: 22, Indels: 9
0.79 0.15 0.06
Matches are distributed among these distances:
75 18 0.16
76 41 0.36
77 7 0.06
78 23 0.20
79 25 0.22
ACGTcount: A:0.31, C:0.27, G:0.11, T:0.31
Consensus pattern (77 bp):
GGATACTCAAACCCCGGTTTTATTTCCAAACACTAATTTTCACAATCAGAGATACTCAAACCCCA
ATATTTCTGAGA
Found at i:83612 original size:124 final size:123
Alignment explanation
Indices: 83389--83635 Score: 350
Period size: 124 Copynumber: 2.0 Consensus size: 123
83379 ATTTTAGCCT
* * * * *
83389 CTTTAGTCCTCAAAAAGCATGATGCCTTTTTCTTTCAAAGCCCACATGAGTTGGTGGCGCCCTTT
1 CTTTACTCCTCAAAAAGCAGGACGCCTTTTTCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * * *
83454 AGTCCTCAAAGAGCAGGACGTCTTTTTCTTTTCAAAGCCTACATAAGTTGGTGGCACC
66 AGTCCTCAAAGAGCAGGACGTCTTTTTCTATTCAAAACCCACACAAGTTGGTGGCACC
* * * *
83512 CTTTACTCCTCAAAAAGGAGGACGTCTTTTTTTTTTCAAAGCCCACACGAGTTGGTGGCACCTTT
1 CTTTACTCCTCAAAAAGCAGGACG-CCTTTTTCTTTCAAAGCCCACACGAGTTGGTGGCACCCTT
* *
83577 TAGTCCTCAAAGAGCTGGACGTCTTTTTCTATTCAAAACCCATACAAGTTGGTGGCACC
65 TAGTCCTCAAAGAGCAGGACGTCTTTTTCTATTCAAAACCCACACAAGTTGGTGGCACC
83636 TTTCAGCAAT
Statistics
Matches: 108, Mismatches: 15, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
123 20 0.19
124 88 0.81
ACGTcount: A:0.24, C:0.25, G:0.19, T:0.32
Consensus pattern (123 bp):
CTTTACTCCTCAAAAAGCAGGACGCCTTTTTCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
AGTCCTCAAAGAGCAGGACGTCTTTTTCTATTCAAAACCCACACAAGTTGGTGGCACC
Found at i:83638 original size:62 final size:62
Alignment explanation
Indices: 83389--83635 Score: 316
Period size: 62 Copynumber: 4.0 Consensus size: 62
83379 ATTTTAGCCT
* * * ** *
83389 CTTTAGTCCTCAAAAAGCATGATGCCTTTTTC-TTTCAAAGCCCACATGAGTTGGTGGCGCC
1 CTTTAGTCCTCAAAAAGCAGGACGTCTTTTTCTTTTCAAAGCCCACACAAGTTGGTGGCACC
* * *
83450 CTTTAGTCCTCAAAGAGCAGGACGTCTTTTTCTTTTCAAAGCCTACATAAGTTGGTGGCACC
1 CTTTAGTCCTCAAAAAGCAGGACGTCTTTTTCTTTTCAAAGCCCACACAAGTTGGTGGCACC
* * * *
83512 CTTTACTCCTCAAAAAGGAGGACGTCTTTTTTTTTTCAAAGCCCACACGAGTTGGTGGCACC
1 CTTTAGTCCTCAAAAAGCAGGACGTCTTTTTCTTTTCAAAGCCCACACAAGTTGGTGGCACC
* * * * * *
83574 TTTTAGTCCTCAAAGAGCTGGACGTCTTTTTCTATTCAAAACCCATACAAGTTGGTGGCACC
1 CTTTAGTCCTCAAAAAGCAGGACGTCTTTTTCTTTTCAAAGCCCACACAAGTTGGTGGCACC
83636 TTTCAGCAAT
Statistics
Matches: 161, Mismatches: 24, Indels: 1
0.87 0.13 0.01
Matches are distributed among these distances:
61 28 0.17
62 133 0.83
ACGTcount: A:0.24, C:0.25, G:0.19, T:0.32
Consensus pattern (62 bp):
CTTTAGTCCTCAAAAAGCAGGACGTCTTTTTCTTTTCAAAGCCCACACAAGTTGGTGGCACC
Found at i:86117 original size:28 final size:28
Alignment explanation
Indices: 86057--86126 Score: 95
Period size: 28 Copynumber: 2.5 Consensus size: 28
86047 TTTACAATCA
* **
86057 GGGATATTCCAACCCCATTATTTCCTCG
1 GGGATACTCCAACCCCATTATTTCCAAG
* *
86085 AGGATACTCCAACCCCGTTATTTCCAAG
1 GGGATACTCCAACCCCATTATTTCCAAG
86113 GGGATACTCCAACC
1 GGGATACTCCAACC
86127 TTGATTTTAT
Statistics
Matches: 36, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
28 36 1.00
ACGTcount: A:0.26, C:0.33, G:0.16, T:0.26
Consensus pattern (28 bp):
GGGATACTCCAACCCCATTATTTCCAAG
Found at i:86165 original size:79 final size:78
Alignment explanation
Indices: 86082--86316 Score: 242
Period size: 79 Copynumber: 3.0 Consensus size: 78
86072 CATTATTTCC
*
86082 TCGAGGATACTCCAACCCCGTTATTTCCAAGGGGATACTCCAACCTTGATTTTATTTCCACAACA
1 TCGAGGATACTCCAACCCCGTTATTTCCAAGGGGATACTCCAACCTCGATTTTATTTCCA-AACA
*
86147 CCAATTTTTCACGA
65 CCAATTTTTCACAA
* * * * * * *
86161 TCGAGGATACTCCAACCTCGTTATTTTCGAGAAGG-TACTCCAA-CTCCAGTTTATTTTCAAA-A
1 TCGAGGATACTCCAACCCCGTTATTTCCAAG-GGGATACTCCAACCTCGATTTTATTTCCAAACA
* *
86223 CTAATTTTTCATAA
65 CCAATTTTTCACAA
* * * * * * * * *
86237 TTGGGGATACTCTAACCCCATTATATCTAAGGGGATACTCCAACCCCGGTCTTATTTCCAAAACA
1 TCGAGGATACTCCAACCCCGTTATTTCCAAGGGGATACTCCAACCTCGATTTTATTTCC-AAACA
86302 CCAATTTTTCACAA
65 CCAATTTTTCACAA
86316 T
1 T
86317 TTGGGGTACG
Statistics
Matches: 122, Mismatches: 29, Indels: 10
0.76 0.18 0.06
Matches are distributed among these distances:
75 2 0.02
76 42 0.34
77 11 0.09
78 15 0.12
79 50 0.41
80 2 0.02
ACGTcount: A:0.29, C:0.26, G:0.12, T:0.32
Consensus pattern (78 bp):
TCGAGGATACTCCAACCCCGTTATTTCCAAGGGGATACTCCAACCTCGATTTTATTTCCAAACAC
CAATTTTTCACAA
Found at i:86200 original size:107 final size:108
Alignment explanation
Indices: 85977--86204 Score: 293
Period size: 107 Copynumber: 2.1 Consensus size: 108
85967 TTTCATAATT
** **
85977 GAAGATACTCCAACCTTGTTATTTCCAAGGGAATACTTTAACCCCGATTTTATTTCCACAACACC
1 GAAGATACTCCAACCCCGTTATTTCCAAGGGAATACTCCAACCCCGATTTTATTTCCACAACACC
* *
86042 AATTTTTTACAATCAGGGATATTCCAACCCCATTATTTCCTCGA
66 AATTTTTCACAATCAGGGATACTCCAACCCCATTATTT-CTCGA
* **
86086 G--GATACTCCAACCCCGTTATTTCCAAGGGGATACTCCAACCTTGATTTTATTTCCACAACACC
1 GAAGATACTCCAACCCCGTTATTTCCAAGGGAATACTCCAACCCCGATTTTATTTCCACAACACC
* * *
86149 AATTTTTCACGATC-GAGGATACTCCAACCTCGTTATTT-TCGA
66 AATTTTTCACAATCAG-GGATACTCCAACCCCATTATTTCTCGA
*
86191 GAAGGTACTCCAAC
1 GAAGATACTCCAAC
86205 TCCAGTTTAT
Statistics
Matches: 103, Mismatches: 13, Indels: 8
0.83 0.10 0.06
Matches are distributed among these distances:
105 5 0.05
106 1 0.01
107 96 0.93
109 1 0.01
ACGTcount: A:0.29, C:0.28, G:0.12, T:0.31
Consensus pattern (108 bp):
GAAGATACTCCAACCCCGTTATTTCCAAGGGAATACTCCAACCCCGATTTTATTTCCACAACACC
AATTTTTCACAATCAGGGATACTCCAACCCCATTATTTCTCGA
Found at i:86297 original size:186 final size:185
Alignment explanation
Indices: 85916--86284 Score: 406
Period size: 186 Copynumber: 2.0 Consensus size: 185
85906 ATTCATGTTT
* * * * *
85916 TTATTTTCGAGGGAATACTCCAACCCTGGTTTTATTCCCAAAACACCAATTTTTCATAATTGAAG
1 TTATTTCCAAGGGAATACTCCAACCCTGATTTTATTCCCAAAACACCAATTTTTCACAATCGAAG
* * ** *
85981 ATACTCCAACCTTGTTATTTCCAAGGGAATACTTTAACCCCGATTTTATTTCCACAACACCAATT
66 ATACTCCAACCTCGTTATTTCCAAAGG-ATACTCCAACCCCGAGTTTATTTCCACAACACCAATT
* * * *
86046 TTTTACAATCAGGGATATTCCAACCCCATTATTTCCTCGAGGATACTCCAACCCCG
130 TTTCACAATCAGGGATACTCCAACCCCATTATATCCTAGAGGATACTCCAACCCCG
* * * * * *
86102 TTATTTCCAAGGGGATACTCCAACCTTGATTTTATTTCCACAACACCAATTTTTCACGATCGAGG
1 TTATTTCCAAGGGAATACTCCAACCCTGATTTTATTCCCAAAACACCAATTTTTCACAATCGAAG
* * * *
86167 ATACTCCAACCTCGTTATTTTCGAGAAGG-TACTCCAACTCC-AGTTTATTTTCA-AA-ACTAAT
66 ATACTCCAACCTCGTTA-TTTCCA-AAGGATACTCCAACCCCGAGTTTATTTCCACAACACCAAT
* ** * *
86228 TTTTCATAATTGGGGATACTCTAACCCCATTATAT-CTAAGGGGATACTCCAACCCCG
129 TTTTCACAATCAGGGATACTCCAACCCCATTATATCCT-AGAGGATACTCCAACCCCG
86285 GTCTTATTTC
Statistics
Matches: 151, Mismatches: 29, Indels: 9
0.80 0.15 0.05
Matches are distributed among these distances:
182 2 0.01
183 50 0.33
184 2 0.01
185 10 0.07
186 79 0.52
187 5 0.03
188 3 0.02
ACGTcount: A:0.29, C:0.26, G:0.12, T:0.33
Consensus pattern (185 bp):
TTATTTCCAAGGGAATACTCCAACCCTGATTTTATTCCCAAAACACCAATTTTTCACAATCGAAG
ATACTCCAACCTCGTTATTTCCAAAGGATACTCCAACCCCGAGTTTATTTCCACAACACCAATTT
TTCACAATCAGGGATACTCCAACCCCATTATATCCTAGAGGATACTCCAACCCCG
Found at i:86382 original size:51 final size:52
Alignment explanation
Indices: 86267--86383 Score: 130
Period size: 51 Copynumber: 2.3 Consensus size: 52
86257 TTATATCTAA
* *
86267 GGGGATACTCCAACCCCGGTCTTATTTCCAAAACACCAATTTTTCACAATTT
1 GGGGATACTCCAACTCCGGTCTTATTTCCAAAACACCAATTTTTCACAATTC
* * ** * ***
86319 GGGG-TACGCCAACTCCGGTTTTATTTTTAAAATATTGATTTTTCACAA-TC
1 GGGGATACTCCAACTCCGGTCTTATTTCCAAAACACCAATTTTTCACAATTC
86369 GGGGATACTCCAACT
1 GGGGATACTCCAACT
86384 TCGTTATCTC
Statistics
Matches: 53, Mismatches: 11, Indels: 3
0.79 0.16 0.04
Matches are distributed among these distances:
50 5 0.09
51 44 0.83
52 4 0.08
ACGTcount: A:0.27, C:0.24, G:0.15, T:0.33
Consensus pattern (52 bp):
GGGGATACTCCAACTCCGGTCTTATTTCCAAAACACCAATTTTTCACAATTC
Found at i:86461 original size:130 final size:127
Alignment explanation
Indices: 86194--86461 Score: 288
Period size: 130 Copynumber: 2.1 Consensus size: 127
86184 TTTTCGAGAA
* * *
86194 GGTACTCCAACTCCAGTTTATTTTCAAAACTAATTTTTCATAATTGGGGATACTCTAACCCCATT
1 GGTACTCCAACTCCAGTTTATTTTCAAAACTAATTTTTCACAATCGGGGATACTCCAACCCCATT
* * *
86259 ATATCTAAGGGGATACTCCAACCCCGGTCTTATTTCCAAAACACCAATTTTTCACAATTTGG
66 ATATCCAAGGGGATACTCCAACCCCGATCTTATTTCCAAAACACCAATTTTCCACAATTTGG
* * * **
86321 GGTACGCCAACTCCGGTTTTATTTTTAAAA-TATTGATTTTTCACAATCGGGGATACTCCAACTT
1 GGTACTCCAACTCCAG-TTTATTTTCAAAACTA---ATTTTTCACAATCGGGGATACTCCAACCC
* * * * * ** * * *
86385 CGTTATCTCCGAGGGGATACTCCAACCCTGATTTTATTTTTAAAACATCGATTTTCCACCA-TTG
62 CATTATATCCAAGGGGATACTCCAACCCCGATCTTATTTCCAAAACACCAATTTTCCACAATTTG
86449 G
127 G
86450 GGATACTCCAAC
1 GG-TACTCCAAC
86462 CCCGTTATTT
Statistics
Matches: 114, Mismatches: 22, Indels: 7
0.80 0.15 0.05
Matches are distributed among these distances:
127 16 0.14
128 12 0.11
129 6 0.05
130 80 0.70
ACGTcount: A:0.28, C:0.24, G:0.14, T:0.34
Consensus pattern (127 bp):
GGTACTCCAACTCCAGTTTATTTTCAAAACTAATTTTTCACAATCGGGGATACTCCAACCCCATT
ATATCCAAGGGGATACTCCAACCCCGATCTTATTTCCAAAACACCAATTTTCCACAATTTGG
Found at i:86500 original size:79 final size:79
Alignment explanation
Indices: 86337--86486 Score: 210
Period size: 79 Copynumber: 1.9 Consensus size: 79
86327 CCAACTCCGG
* * * **
86337 TTTTATTTTTAAAATATTGATTTTTCACAATCGGGGATACTCCAACTTCGTTATCTCCGAGGGGA
1 TTTTATTTTTAAAACATCGATTTTCCACAATCGGGGATACTCCAACCCCGTTATCTCCGAGGGGA
86402 TACTCCAACCCTGA
66 TACTCCAACCCTGA
* * * * *
86416 TTTTATTTTTAAAACATCGATTTTCCACCATTGGGGATACTCCAACCCCGTTATTTCTGAGGGGG
1 TTTTATTTTTAAAACATCGATTTTCCACAATCGGGGATACTCCAACCCCGTTATCTCCGAGGGGA
86481 TACTCC
66 TACTCC
86487 GACCTCGTTT
Statistics
Matches: 61, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
79 61 1.00
ACGTcount: A:0.25, C:0.23, G:0.16, T:0.37
Consensus pattern (79 bp):
TTTTATTTTTAAAACATCGATTTTCCACAATCGGGGATACTCCAACCCCGTTATCTCCGAGGGGA
TACTCCAACCCTGA
Found at i:92392 original size:22 final size:22
Alignment explanation
Indices: 92367--92413 Score: 60
Period size: 23 Copynumber: 2.1 Consensus size: 22
92357 AAAATATTAT
92367 AATAAGTAAAA-AAACAAAAAAA
1 AATAA-TAAAACAAACAAAAAAA
*
92389 AATAATAAAATCAAACTAAAAAA
1 AATAATAAAA-CAAACAAAAAAA
92412 AA
1 AA
92414 GGGGAGCCAT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
21 5 0.23
22 5 0.23
23 12 0.55
ACGTcount: A:0.79, C:0.06, G:0.02, T:0.13
Consensus pattern (22 bp):
AATAATAAAACAAACAAAAAAA
Found at i:93536 original size:13 final size:13
Alignment explanation
Indices: 93506--93536 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
93496 CGATATATTG
*
93506 TACAATGTATCGA
1 TACATTGTATCGA
93519 TACATTGTATCGA
1 TACATTGTATCGA
93532 TACAT
1 TACAT
93537 GAAGAAATGT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.35, C:0.16, G:0.13, T:0.35
Consensus pattern (13 bp):
TACATTGTATCGA
Found at i:100347 original size:18 final size:18
Alignment explanation
Indices: 100326--100369 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 18
100316 AAAAATAAAT
100326 AAAAAATAAAAAAACCAA-
1 AAAAAA-AAAAAAACCAAG
*
100344 AAAATAAAAAAAAACGAAG
1 AAAA-AAAAAAAAACCAAG
100363 AAAAAAA
1 AAAAAAA
100370 TAACAAAAGA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
18 17 0.74
19 6 0.26
ACGTcount: A:0.84, C:0.07, G:0.05, T:0.05
Consensus pattern (18 bp):
AAAAAAAAAAAAACCAAG
Found at i:100366 original size:27 final size:27
Alignment explanation
Indices: 100313--100367 Score: 76
Period size: 27 Copynumber: 2.0 Consensus size: 27
100303 TCCTTCATAC
*
100313 CCAAAAAATAAATAAAAAATAAAAAAA
1 CCAAAAAATAAATAAAAAAGAAAAAAA
100340 CCAAAAAATAAA-AAAAAACGAAGAAAAA
1 CCAAAAAATAAATAAAAAA-GAA-AAAAA
100368 AATAACAAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
26 6 0.24
27 14 0.56
28 5 0.20
ACGTcount: A:0.80, C:0.09, G:0.04, T:0.07
Consensus pattern (27 bp):
CCAAAAAATAAATAAAAAAGAAAAAAA
Found at i:104135 original size:32 final size:32
Alignment explanation
Indices: 104094--104156 Score: 99
Period size: 32 Copynumber: 2.0 Consensus size: 32
104084 TAGCTAATTA
*
104094 TGTATCGATACAACATTTATGTATCGATACAT
1 TGTATCGATACAACACTTATGTATCGATACAT
* *
104126 TGTATCGATATAATACTTATGTATCGATACA
1 TGTATCGATACAACACTTATGTATCGATACA
104157 AATCGTTGAA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
32 28 1.00
ACGTcount: A:0.35, C:0.14, G:0.13, T:0.38
Consensus pattern (32 bp):
TGTATCGATACAACACTTATGTATCGATACAT
Found at i:105743 original size:21 final size:21
Alignment explanation
Indices: 105714--105758 Score: 56
Period size: 22 Copynumber: 2.1 Consensus size: 21
105704 AAGTTTTTAT
*
105714 TTTTCTTAGCTAA-TTCATTA
1 TTTTCTTAGCCAAGTTCATTA
*
105734 TTTTCATTAGCCAAGTTCTTTA
1 TTTTC-TTAGCCAAGTTCATTA
105756 TTT
1 TTT
105759 CAACTTGCAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 5 0.24
21 7 0.33
22 9 0.43
ACGTcount: A:0.22, C:0.16, G:0.07, T:0.56
Consensus pattern (21 bp):
TTTTCTTAGCCAAGTTCATTA
Found at i:105758 original size:22 final size:21
Alignment explanation
Indices: 105703--105758 Score: 62
Period size: 21 Copynumber: 2.7 Consensus size: 21
105693 ATGAATCATG
105703 CAAGTT-TTTATTTTTCTTAGC
1 CAAGTTCTTTA-TTTTCTTAGC
* *
105724 TAA-TTCATTATTTTCATTAGC
1 CAAGTTCTTTATTTTC-TTAGC
105745 CAAGTTCTTTATTT
1 CAAGTTCTTTATTT
105759 CAACTTGCAA
Statistics
Matches: 28, Mismatches: 4, Indels: 5
0.76 0.11 0.14
Matches are distributed among these distances:
20 7 0.25
21 12 0.43
22 9 0.32
ACGTcount: A:0.23, C:0.14, G:0.07, T:0.55
Consensus pattern (21 bp):
CAAGTTCTTTATTTTCTTAGC
Found at i:106356 original size:12 final size:12
Alignment explanation
Indices: 106341--106374 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
106331 TCCGAGTCAC
106341 CATCTTCATCAA
1 CATCTTCATCAA
*
106353 CATCTTCATCAT
1 CATCTTCATCAA
*
106365 CTTCTTCATC
1 CATCTTCATC
106375 TTTGATGGTT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.24, C:0.35, G:0.00, T:0.41
Consensus pattern (12 bp):
CATCTTCATCAA
Found at i:107995 original size:13 final size:13
Alignment explanation
Indices: 107977--108002 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
107967 CAATTTTTGG
107977 TGTATCGATACAT
1 TGTATCGATACAT
107990 TGTATCGATACAT
1 TGTATCGATACAT
108003 ACTTGGTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:112250 original size:28 final size:28
Alignment explanation
Indices: 112196--113098 Score: 1115
Period size: 28 Copynumber: 31.5 Consensus size: 28
112186 TTACCATTGG
*
112196 CTTGTGGGCTTTGAAAAGAGTGCCACTGA
1 CTTGTGGGCTTTG-AAAGGGTGCCACTGA
*
112225 CTTGTGGGCTTTGAAAGGGTGCCACTAA
1 CTTGTGGGCTTTGAAAGGGTGCCACTGA
*
112253 CTTGTGGGCTTTGAAAGGATGCCACTGA
1 CTTGTGGGCTTTGAAAGGGTGCCACTGA
* *
112281 CTTGTGGGCTTTGAAAAGAGTGCCATTGA
1 CTTGTGGGCTTTG-AAAGGGTGCCACTGA
*
112310 CTTGTGGGCTTTGAAAAGGTGCCACTGA
1 CTTGTGGGCTTTGAAAGGGTGCCACTGA
* * *
112338 CTTGTGGGCCTTAAAAGGGTGCCACTAA
1 CTTGTGGGCTTTGAAAGGGTGCCACTGA
*
112366 CTTGTGGGCTTTGAAAGGATGCCACTGA
1 CTTGTGGGCTTTGAAAGGGTGCCACTGA
*
112394 CTTGTGTGGGCTTTGAAAAGAGTGCCACTGA
1 C-T-TGTGGGCTTTG-AAAGGGTGCCACTGA
*
112425 CTTGTGGGCTTTGAAAGGATGCCACTGA
1 CTTGTGGGCTTTGAAAGGGTGCCACTGA
* * * *
112453 CTTGTGTGCTTTGAAAAAAGTTGCCACCGA
1 CTTGTGGGCTTTG--AAAGGGTGCCACTGA
**
112483 CTTGTGTGGGCTTTGAAAAAAGTGCCACTGA
1 C-T-TGTGGGCTTTG-AAAGGGTGCCACTGA
*
112514 CTTGTGGGCTTTGAAAGGATGCCACTGA
1 CTTGTGGGCTTTGAAAGGGTGCCACTGA
* * * * *
112542 CTTGTGTGCTTTGAAAAGAGTTACCACCGG
1 CTTGTGGGCTTTG-AAAG-GGTGCCACTGA
* *
112572 CTTGTGGGCTTTGAAAGGGTGCTATTGA
1 CTTGTGGGCTTTGAAAGGGTGCCACTGA
* *
112600 CTTGTGGGCTTTAAAAGGGTGCCACTAA
1 CTTGTGGGCTTTGAAAGGGTGCCACTGA
112628 CTTGTGGGCTTTGAAAGGGTGCCACTGA
1 CTTGTGGGCTTTGAAAGGGTGCCACTGA
* *
112656 CTTGTAGGCTTTGAAAGGATGCCACTGA
1 CTTGTGGGCTTTGAAAGGGTGCCACTGA
**
112684 CTTGTGGGCTTTGAAAATAGTGCCACTGA
1 CTTGTGGGCTTTG-AAAGGGTGCCACTGA
112713 CTTGTGGGCTTTGGAAA-GGTGCCACTGA
1 CTTGTGGGCTTT-GAAAGGGTGCCACTGA
*
112741 CTTGTGGGCTTTGAAAGGGTGCCACTAA
1 CTTGTGGGCTTTGAAAGGGTGCCACTGA
* *
112769 CTTGTGGGCTTTGAAAGGATGCCACTAA
1 CTTGTGGGCTTTGAAAGGGTGCCACTGA
* * * *
112797 CTTGTGAGCTTTGAAAAGAGTTGCTACCGA
1 CTTGTGGGCTTTG-AAAG-GGTGCCACTGA
* *
112827 CTCGTGTGGGCTTTAAAAGGATGCCACTGA
1 CT--TGTGGGCTTTGAAAGGGTGCCACTGA
112857 CTTGTGGGCTTTGAAAGGGTGCCACTGA
1 CTTGTGGGCTTTGAAAGGGTGCCACTGA
* *
112885 ATTGTGGGCTTTGAAAGGATGCCACTGA
1 CTTGTGGGCTTTGAAAGGGTGCCACTGA
* * *
112913 CTTGTGGGCTTTGAAAAGAGTTGCAACCGA
1 CTTGTGGGCTTTG-AAAG-GGTGCCACTGA
** *
112943 CTCATGGGCTTTGAAAGGATGCCACTGA
1 CTTGTGGGCTTTGAAAGGGTGCCACTGA
* *
112971 CTTGTGGGCTTTGAAAGGATGCCACTAA
1 CTTGTGGGCTTTGAAAGGGTGCCACTGA
112999 CTTGTGGGCTTTGAAAGGGTGCCACTGA
1 CTTGTGGGCTTTGAAAGGGTGCCACTGA
* *
113027 CTTGTGGGCTTTGAAAAGAGTGCCATTGA
1 CTTGTGGGCTTTG-AAAGGGTGCCACTGA
*
113056 CTTGTGGGCTTTGAAAAGGTGCCACTGA
1 CTTGTGGGCTTTGAAAGGGTGCCACTGA
*
113084 CTTGTGGGCCTTGAA
1 CTTGTGGGCTTTGAA
113099 GAGATGAACG
Statistics
Matches: 760, Mismatches: 94, Indels: 41
0.85 0.11 0.05
Matches are distributed among these distances:
27 4 0.01
28 486 0.64
29 134 0.18
30 84 0.11
31 33 0.04
32 19 0.03
ACGTcount: A:0.23, C:0.17, G:0.31, T:0.29
Consensus pattern (28 bp):
CTTGTGGGCTTTGAAAGGGTGCCACTGA
Found at i:112292 original size:85 final size:85
Alignment explanation
Indices: 112196--113098 Score: 1188
Period size: 85 Copynumber: 10.5 Consensus size: 85
112186 TTACCATTGG
*
112196 CTTGTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGCTTTGAAAGGGTGCCACTAACTTGTGGG
1 CTTGTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGCTTTGAAAGGGTGCCACTGACTTGTGGG
112261 CTTTGAAAGGATGCCACTGA
66 CTTTGAAAGGATGCCACTGA
* *
112281 CTTGTGGGCTTTGAAAAGAGTGCCATTGACTTGTGGGCTTTGAAAAGGTGCCACTGACTTGTGGG
1 CTTGTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGCTTTGAAAGGGTGCCACTGACTTGTGGG
* * * *
112346 CCTTAAAAGGGTGCCACTAA
66 CTTTGAAAGGATGCCACTGA
* *
112366 CTTGTGGGCTTTGAAAGGA-TGCCACTGACTTGTGTGGGCTTTGAAAAGAGTGCCACTGACTTGT
1 CTTGTGGGCTTTGAAAAGAGTGCCACTGAC-T-TGTGGGCTTTG-AAAGGGTGCCACTGACTTGT
112430 GGGCTTTGAAAGGATGCCACTGA
63 GGGCTTTGAAAGGATGCCACTGA
* * * **
112453 CTTGTGTGCTTTGAAAAAAGTTGCCACCGACTTGTGTGGGCTTTGAAAAAAGTGCCACTGACTTG
1 CTTGTGGGCTTTGAAAAGAG-TGCCACTGAC-T-TGTGGGCTTTG-AAAGGGTGCCACTGACTTG
112518 TGGGCTTTGAAAGGATGCCACTGA
62 TGGGCTTTGAAAGGATGCCACTGA
* * * * * *
112542 CTTGTGTGCTTTGAAAAGAGTTACCACCGGCTTGTGGGCTTTGAAAGGGTGCTATTGACTTGTGG
1 CTTGTGGGCTTTGAAAAGAG-TGCCACTGACTTGTGGGCTTTGAAAGGGTGCCACTGACTTGTGG
* * *
112607 GCTTTAAAAGGGTGCCACTAA
65 GCTTTGAAAGGATGCCACTGA
* * *
112628 CTTGTGGGCTTTG-AAAGGGTGCCACTGACTTGTAGGCTTTGAAAGGATGCCACTGACTTGTGGG
1 CTTGTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGCTTTGAAAGGGTGCCACTGACTTGTGGG
**
112692 CTTTGAAAATAGTGCCACTGA
66 CTTTGAAAGGA-TGCCACTGA
* *
112713 CTTGTGGGCTTTGGAAAG-GTGCCACTGACTTGTGGGCTTTGAAAGGGTGCCACTAACTTGTGGG
1 CTTGTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGCTTTGAAAGGGTGCCACTGACTTGTGGG
*
112777 CTTTGAAAGGATGCCACTAA
66 CTTTGAAAGGATGCCACTGA
* * * * *
112797 CTTGTGAGCTTTGAAAAGAGTTGCTACCGACTCGTGTGGGCTTTAAAAGGATGCCACTGACTTGT
1 CTTGTGGGCTTTGAAAAGAG-TGCCACTGACT--TGTGGGCTTTGAAAGGGTGCCACTGACTTGT
*
112862 GGGCTTTGAAAGGGTGCCACTGA
63 GGGCTTTGAAAGGATGCCACTGA
* * * * * **
112885 ATTGTGGGCTTTGAAAGGA-TGCCACTGACTTGTGGGCTTTGAAAAGAGTTGCAACCGACTCATG
1 CTTGTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGCTTTG-AAAG-GGTGCCACTGACTTGTG
112949 GGCTTTGAAAGGATGCCACTGA
64 GGCTTTGAAAGGATGCCACTGA
* *
112971 CTTGTGGGCTTTGAAAGGA-TGCCACTAACTTGTGGGCTTTGAAAGGGTGCCACTGACTTGTGGG
1 CTTGTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGCTTTGAAAGGGTGCCACTGACTTGTGGG
* *
113035 CTTTGAAAAGAGTGCCATTGA
66 CTTTGAAAGGA-TGCCACTGA
*
113056 CTTGTGGGCTTTGAAAAG-GTGCCACTGACTTGTGGGCCTTGAA
1 CTTGTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGCTTTGAA
113099 GAGATGAACG
Statistics
Matches: 720, Mismatches: 83, Indels: 30
0.86 0.10 0.04
Matches are distributed among these distances:
84 112 0.16
85 231 0.32
86 153 0.21
87 64 0.09
88 66 0.09
89 94 0.13
ACGTcount: A:0.23, C:0.17, G:0.31, T:0.29
Consensus pattern (85 bp):
CTTGTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGCTTTGAAAGGGTGCCACTGACTTGTGGG
CTTTGAAAGGATGCCACTGA
Found at i:114313 original size:1 final size:1
Alignment explanation
Indices: 114302--114384 Score: 67
Period size: 1 Copynumber: 83.0 Consensus size: 1
114292 ATCTAGACCC
* * * * ** * * *
114302 TTTTTTGTTTTTTTGTTTTTTTTTCTTGTTTTTTTTTAATTTTTTTGTTTTTTTGTTTTTTTTTG
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
* *
114367 GTTTTTTTTGTTTTTTTT
1 TTTTTTTTTTTTTTTTTT
114385 GGGTATGAAG
Statistics
Matches: 64, Mismatches: 18, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
1 64 1.00
ACGTcount: A:0.02, C:0.01, G:0.10, T:0.87
Consensus pattern (1 bp):
T
Found at i:114315 original size:8 final size:8
Alignment explanation
Indices: 114302--114383 Score: 78
Period size: 8 Copynumber: 9.8 Consensus size: 8
114292 ATCTAGACCC
114302 TTTTTTGT
1 TTTTTTGT
114310 TTTTTTGT
1 TTTTTTGT
114318 TTTTTT-T
1 TTTTTTGT
114325 TCTTGTTT-T
1 T-TT-TTTGT
**
114334 TTTTTAAT
1 TTTTTTGT
114342 TTTTTTGT
1 TTTTTTGT
114350 TTTTTTGTTT
1 TTTTTTG--T
114360 TTTTTTGGTT
1 TTTTTT-G-T
114370 TTTTTTGT
1 TTTTTTGT
114378 TTTTTT
1 TTTTTT
114384 TGGGTATGAA
Statistics
Matches: 65, Mismatches: 3, Indels: 12
0.81 0.04 0.15
Matches are distributed among these distances:
7 4 0.06
8 39 0.60
9 6 0.09
10 15 0.23
11 1 0.02
ACGTcount: A:0.02, C:0.01, G:0.10, T:0.87
Consensus pattern (8 bp):
TTTTTTGT
Found at i:114322 original size:10 final size:10
Alignment explanation
Indices: 114302--114384 Score: 93
Period size: 10 Copynumber: 8.5 Consensus size: 10
114292 ATCTAGACCC
114302 TTTTTTGTTT
1 TTTTTTGTTT
114312 TTTTGTT-TTT
1 TTTT-TTGTTT
114322 TTTTCTTGTTT
1 TTTT-TTGTTT
**
114333 TTTTTT-AAT
1 TTTTTTGTTT
114342 TTTTTTG--T
1 TTTTTTGTTT
114350 TTTTTTGTTT
1 TTTTTTGTTT
*
114360 TTTTTTGGTT
1 TTTTTTGTTT
114370 TTTTTTGTTT
1 TTTTTTGTTT
114380 TTTTT
1 TTTTT
114385 GGGTATGAAG
Statistics
Matches: 63, Mismatches: 5, Indels: 10
0.81 0.06 0.13
Matches are distributed among these distances:
8 8 0.13
9 7 0.11
10 39 0.62
11 9 0.14
ACGTcount: A:0.02, C:0.01, G:0.10, T:0.87
Consensus pattern (10 bp):
TTTTTTGTTT
Found at i:114347 original size:27 final size:26
Alignment explanation
Indices: 114317--114382 Score: 87
Period size: 27 Copynumber: 2.5 Consensus size: 26
114307 TGTTTTTTTG
*
114317 TTTTTTTTTCTTGTTTTTTTTTAATT
1 TTTTTTTTTTTTGTTTTTTTTTAATT
**
114343 TTTTTGTTTTTTTGTTTTTTTTTGGTT
1 TTTTT-TTTTTTTGTTTTTTTTTAATT
114370 TTTTTTGTTTTTT
1 TTTTTT-TTTTTT
114383 TTGGGTATGA
Statistics
Matches: 35, Mismatches: 3, Indels: 3
0.85 0.07 0.07
Matches are distributed among these distances:
26 6 0.17
27 29 0.83
ACGTcount: A:0.03, C:0.02, G:0.09, T:0.86
Consensus pattern (26 bp):
TTTTTTTTTTTTGTTTTTTTTTAATT
Found at i:140088 original size:14 final size:14
Alignment explanation
Indices: 140037--140091 Score: 65
Period size: 14 Copynumber: 3.9 Consensus size: 14
140027 TGTTAGACTT
**
140037 CACATCATGTATTC
1 CACATCATACATTC
* *
140051 AACATCATGCATTC
1 CACATCATACATTC
140065 CACATCATACATTC
1 CACATCATACATTC
*
140079 CACATTATACATT
1 CACATCATACATT
140092 TACATTACCA
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
14 36 1.00
ACGTcount: A:0.35, C:0.29, G:0.04, T:0.33
Consensus pattern (14 bp):
CACATCATACATTC
Found at i:140588 original size:32 final size:32
Alignment explanation
Indices: 140552--140624 Score: 85
Period size: 32 Copynumber: 2.3 Consensus size: 32
140542 TTTTCCCAAA
* **
140552 AAGCCCACA-AGAGTTGGTGGCAACCTTTTCTT
1 AAGCCCACATAG-GTTAGTGGCAACCACTTCTT
**
140584 AAGCCCACATAGGTTAGTGGTGACCACTTCTT
1 AAGCCCACATAGGTTAGTGGCAACCACTTCTT
140616 AAGCCCACA
1 AAGCCCACA
140625 CAAGCTAGAG
Statistics
Matches: 35, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
32 33 0.94
33 2 0.06
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (32 bp):
AAGCCCACATAGGTTAGTGGCAACCACTTCTT
Found at i:142445 original size:11 final size:11
Alignment explanation
Indices: 142420--142461 Score: 57
Period size: 11 Copynumber: 3.7 Consensus size: 11
142410 GCAAAGTAAG
*
142420 AAGAAAAACAAA
1 AAGAAAAA-AGA
*
142432 AAGAAAAGAGA
1 AAGAAAAAAGA
142443 AAGAAAAAAGA
1 AAGAAAAAAGA
142454 AAGAAAAA
1 AAGAAAAA
142462 TAGTGAAACC
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
11 20 0.74
12 7 0.26
ACGTcount: A:0.81, C:0.02, G:0.17, T:0.00
Consensus pattern (11 bp):
AAGAAAAAAGA
Found at i:143253 original size:80 final size:80
Alignment explanation
Indices: 143120--143278 Score: 318
Period size: 80 Copynumber: 2.0 Consensus size: 80
143110 TGTTGGAATG
143120 GTATTTTGGATATTTAGGGGTGAAATTGCAAATTTTAAAAGTTTAGGACCAAATTGCAATAAAGC
1 GTATTTTGGATATTTAGGGGTGAAATTGCAAATTTTAAAAGTTTAGGACCAAATTGCAATAAAGC
143185 AAAAGTAAAGGGTCA
66 AAAAGTAAAGGGTCA
143200 GTATTTTGGATATTTAGGGGTGAAATTGCAAATTTTAAAAGTTTAGGACCAAATTGCAATAAAGC
1 GTATTTTGGATATTTAGGGGTGAAATTGCAAATTTTAAAAGTTTAGGACCAAATTGCAATAAAGC
143265 AAAAGTAAAGGGTC
66 AAAAGTAAAGGGTC
143279 GAACGACAAA
Statistics
Matches: 79, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
80 79 1.00
ACGTcount: A:0.40, C:0.08, G:0.23, T:0.30
Consensus pattern (80 bp):
GTATTTTGGATATTTAGGGGTGAAATTGCAAATTTTAAAAGTTTAGGACCAAATTGCAATAAAGC
AAAAGTAAAGGGTCA
Found at i:143897 original size:155 final size:155
Alignment explanation
Indices: 143604--143899 Score: 375
Period size: 155 Copynumber: 1.9 Consensus size: 155
143594 TTTTCAAAAA
* * * *
143604 TAAATAAATATTAATCATTTTTATTTTTTTAAATTCCTCTGGGTATTCGTAGTGGTATAAAAGAT
1 TAAATAAATATTAATCATTTTTATTCTTGTAAATTCCTATGGGTATTCGTAGAGGTATAAAAGAT
* * * * * ** *
143669 TTTGAAAAACTTTTCATATCTTTTTAGGTTTCCATTAAGGTATGAAATGATTTTTTTTAAAAAAA
66 TTTAAAAAACCTTTCATATCTTTGTAGGTATCCATTAAGGTACGAAATGAACTTTTTGAAAAAAA
143734 TAATAATTAAATTAACTCTCCTCAT
131 TAATAATTAAATTAACTCTCCTCAT
* *
143759 TAAATTAAATATTAAT-AGTTTTTA-TCTTGTATATTTCTATGGGTATTCGTAGAGGTATAAAAG
1 TAAA-TAAATATTAATCA-TTTTTATTCTTGTAAATTCCTATGGGTATTCGTAGAGGTATAAAAG
* *
143822 ATTTTAAAAAACACTTT-ATATCTTTGTGGGTATCCATTAAGGTACGAAATGACACTTTTTGAGA
64 ATTTTAAAAAAC-CTTTCATATCTTTGTAGGTATCCATTAAGGTACGAAATGA-ACTTTTTGAAA
*
143886 AAAATTA-AATTAAA
127 AAAATAATAATTAAA
143900 CATGTGAAAT
Statistics
Matches: 120, Mismatches: 17, Indels: 8
0.83 0.12 0.06
Matches are distributed among these distances:
155 87 0.73
156 33 0.28
ACGTcount: A:0.37, C:0.09, G:0.12, T:0.43
Consensus pattern (155 bp):
TAAATAAATATTAATCATTTTTATTCTTGTAAATTCCTATGGGTATTCGTAGAGGTATAAAAGAT
TTTAAAAAACCTTTCATATCTTTGTAGGTATCCATTAAGGTACGAAATGAACTTTTTGAAAAAAA
TAATAATTAAATTAACTCTCCTCAT
Found at i:154775 original size:79 final size:78
Alignment explanation
Indices: 154664--155291 Score: 692
Period size: 79 Copynumber: 7.9 Consensus size: 78
154654 TCATTGATGT
* * *
154664 TTTTATTTCTAAAATACCGA-TTTTCTATCATCGGGGATACTCCAACCTCGTTATTTTCGAGGGG
1 TTTTATTTCTAAAACATCGATTTTTC-ACCATCGGGGATACTCCAACC-CGTTATTTTCGAGGGG
* *
154728 ATACTCCAACTCTAG
64 ATACTCTAACCCTAG
* * * *
154743 TTTTATTTCTAAAACA-CTGATTTTTCACCATCGGGGATACTCTAACCCCGTAATTTTTGAGGAG
1 TTTTATTTCTAAAACATC-GATTTTTCACCATCGGGGATACTCCAA-CCCGTTATTTTCGAGGGG
*
154807 ATACT-TCAACCCTGG
64 ATACTCT-AACCCTAG
* * * *
154822 TTTTATTTCTAAAACATGGATTTTTCACCATCAGGGATACTCTAACCCTGTTATTTTTGAGGGGA
1 TTTTATTTCTAAAACATCGATTTTTCACCATCGGGGATACTCCAACCC-GTTATTTTCGAGGGGA
* *
154887 TACTCTAACCCCAA
65 TACTCTAACCCTAG
* * *
154901 TTTTATTTCTAAGACATCGATTTTCCACCATCGGGGATACTCTAACCCTGTTATTTTCGAGGGGA
1 TTTTATTTCTAAAACATCGATTTTTCACCATCGGGGATACTCCAACCC-GTTATTTTCGAGGGGA
*
154966 TACTCTAACCC-CG
65 TACTCTAACCCTAG
* * * *
154979 ATTTTATTTCTAAAACATTGA-TTTTCTACCATCAGGGATACTTCAACCCCGTTATTTTCGAGGA
1 -TTTTATTTCTAAAACATCGATTTTTC-ACCATCGGGGATACTCCAA-CCCGTTATTTTCGAGGG
*
155043 GATACTCTAACCCTGG
63 GATACTCTAACCCTAG
*
155059 TTTTATTTCTAAAACATCGATTTTTCACCATCGGGGATACTCCAACCCTGTTATTTTCGAAGGGA
1 TTTTATTTCTAAAACATCGATTTTTCACCATCGGGGATACTCCAACCC-GTTATTTTCGAGGGGA
155124 TACTCTAACCCTAG
65 TACTCTAACCCTAG
* * * * **
155138 TTTTATTTCTAAAACATCGATTTTTTACCAAT-AGGGATACTTCAACCGTGTTATTTTCGAAAGG
1 TTTTATTTCTAAAACATCGATTTTTCACC-ATCGGGGATACTCCAACC-CGTTATTTTCGAGGGG
* *
155202 ATACTTTAACCCTAA
64 ATACTCTAACCCTAG
* * * * * * * * *
155217 CTTTATTTCTTAAACATCAATCTTCCACTATCGAGGATACTCCAACCCCGGTATTTTTGAGGGGA
1 TTTTATTTCTAAAACATCGATTTTTCACCATCGGGGATACTCCAA-CCCGTTATTTTCGAGGGGA
*
155282 TACTCCAACC
65 TACTCTAACC
155292 ATGTTTTCAT
Statistics
Matches: 471, Mismatches: 61, Indels: 34
0.83 0.11 0.06
Matches are distributed among these distances:
78 13 0.03
79 437 0.93
80 21 0.04
ACGTcount: A:0.27, C:0.23, G:0.14, T:0.36
Consensus pattern (78 bp):
TTTTATTTCTAAAACATCGATTTTTCACCATCGGGGATACTCCAACCCGTTATTTTCGAGGGGAT
ACTCTAACCCTAG
Found at i:154889 original size:158 final size:158
Alignment explanation
Indices: 154664--155291 Score: 764
Period size: 158 Copynumber: 4.0 Consensus size: 158
154654 TCATTGATGT
* * * * *
154664 TTTTATTTCTAAAATACCGATTTTCTATCATCGGGGATACTCCAA-CCTCGTTATTTTCGAGGGG
1 TTTTATTTCTAAAACATCGATTTTCTACCATCAGGGATACTTCAACCCT-GTTATTTTCGAGGGG
* * * * *
154728 ATACTCCAACTCTAGTTTTATTTCTAAAACA-CTGATTTTTCACCATCGGGGATACTCTAACCCC
65 ATACTCTAACCCTAATTTTATTTCTAAAACATC-GATTTTCCACCATCGGGGATACTCCAACCCC
* * *
154792 GTAATTTTTGAGGAGATACT-TCAACCCTGG
129 GTTATTTTCGAGGGGATACTCT-AACCCTGG
* *
154822 TTTTATTTCTAAAACATGGATTTT-TCACCATCAGGGATAC-TCTAACCCTGTTATTTTTGAGGG
1 TTTTATTTCTAAAACATCGATTTTCT-ACCATCAGGGATACTTC-AACCCTGTTATTTTCGAGGG
* * * *
154885 GATACTCTAACCCCAATTTTATTTCTAAGACATCGATTTTCCACCATCGGGGATACTCTAACCCT
64 GATACTCTAACCCTAATTTTATTTCTAAAACATCGATTTTCCACCATCGGGGATACTCCAACCCC
* *
154950 GTTATTTTCGAGGGGATACTCTAACCCCGA
129 GTTATTTTCGAGGGGATACTCTAACCCTGG
* * *
154980 TTTTATTTCTAAAACATTGATTTTCTACCATCAGGGATACTTCAACCCCGTTATTTTCGAGGAGA
1 TTTTATTTCTAAAACATCGATTTTCTACCATCAGGGATACTTCAACCCTGTTATTTTCGAGGGGA
** * *
155045 TACTCTAACCCTGGTTTTATTTCTAAAACATCGATTTTTCACCATCGGGGATACTCCAACCCTGT
66 TACTCTAACCCTAATTTTATTTCTAAAACATCGATTTTCCACCATCGGGGATACTCCAACCCCGT
* *
155110 TATTTTCGAAGGGATACTCTAACCCTAG
131 TATTTTCGAGGGGATACTCTAACCCTGG
* * **
155138 TTTTATTTCTAAAACATCGATTTTTTACCAAT-AGGGATACTTCAACCGTGTTATTTTCGAAAGG
1 TTTTATTTCTAAAACATCGATTTTCTACC-ATCAGGGATACTTCAACCCTGTTATTTTCGAGGGG
* * * * * * *
155202 ATACTTTAACCCTAACTTTATTTCTTAAACATCAATCTTCCACTATCGAGGATACTCCAACCCCG
65 ATACTCTAACCCTAATTTTATTTCTAAAACATCGATTTTCCACCATCGGGGATACTCCAACCCCG
* * *
155267 GTATTTTTGAGGGGATACTCCAACC
130 TTATTTTCGAGGGGATACTCTAACC
155292 ATGTTTTCAT
Statistics
Matches: 407, Mismatches: 55, Indels: 16
0.85 0.12 0.03
Matches are distributed among these distances:
157 2 0.00
158 395 0.97
159 10 0.02
ACGTcount: A:0.27, C:0.23, G:0.14, T:0.36
Consensus pattern (158 bp):
TTTTATTTCTAAAACATCGATTTTCTACCATCAGGGATACTTCAACCCTGTTATTTTCGAGGGGA
TACTCTAACCCTAATTTTATTTCTAAAACATCGATTTTCCACCATCGGGGATACTCCAACCCCGT
TATTTTCGAGGGGATACTCTAACCCTGG
Found at i:155083 original size:237 final size:236
Alignment explanation
Indices: 154664--155291 Score: 782
Period size: 237 Copynumber: 2.6 Consensus size: 236
154654 TCATTGATGT
* * * *
154664 TTTTATTTCTAAAATACCGATTTTCTATCATCGGGGATACTCCAA-CCTCGTTATTTTCGAGGGG
1 TTTTATTTCTAAAACATCGATTTTCTACCATCGGGGATACTCTAACCCT-GTTATTTTCGAGGGG
* * * * *
154728 ATACTCCAACTCTAGTTTTATTTCTAAAACACTGATTTT-TCACCATCGGGGATAC-TCTAACCC
65 ATACTCTAACCCCAATTTTATTTCTAAAACATTGATTTTCT-ACCATC-GGGATACTTC-AACCC
* *
154791 CGTAATTTTTGAGGAGATACT-TCAACCCTGGTTTTATTTCTAAAACATGGATTTTTCACCATCA
127 CGTTATTTTTGAGGAGATACTCT-AACCCTGGTTTTATTTCTAAAACATCGATTTTTCACCATCA
* * *
154855 GGGATACTCTAACCCTGTTATTTTTGAGGGGATACTCTAACCCCAA
191 GGGATACTCCAACCCTGTTATTTTCGAAGGGATACTCTAACCCCAA
* *
154901 TTTTATTTCTAAGACATCGATTTTCCACCATCGGGGATACTCTAACCCTGTTATTTTCGAGGGGA
1 TTTTATTTCTAAAACATCGATTTTCTACCATCGGGGATACTCTAACCCTGTTATTTTCGAGGGGA
*
154966 TACTCTAACCCCGATTTTATTTCTAAAACATTGATTTTCTACCATCAGGGATACTTCAACCCCGT
66 TACTCTAACCCCAATTTTATTTCTAAAACATTGATTTTCTACCATC-GGGATACTTCAACCCCGT
* *
155031 TATTTTCGAGGAGATACTCTAACCCTGGTTTTATTTCTAAAACATCGATTTTTCACCATCGGGGA
130 TATTTTTGAGGAGATACTCTAACCCTGGTTTTATTTCTAAAACATCGATTTTTCACCATCAGGGA
* *
155096 TACTCCAACCCTGTTATTTTCGAAGGGATACTCTAACCCTAG
195 TACTCCAACCCTGTTATTTTCGAAGGGATACTCTAACCCCAA
* * * **
155138 TTTTATTTCTAAAACATCGATTTTTTACCAAT-AGGGATACT-TCAACCGTGTTATTTTCGAAAG
1 TTTTATTTCTAAAACATCGATTTTCTACC-ATCGGGGATACTCT-AACCCTGTTATTTTCGAGGG
* * * * ** * * * *
155201 GATACTTTAACCCTAACTTTATTTCTTAAACATCAATCTTCCACTATCGAGGATACTCCAACCCC
64 GATACTCTAACCCCAATTTTATTTCTAAAACATTGATTTTCTACCATCG-GGATACTTCAACCCC
* * *
155266 GGTATTTTTGAGGGGATACTCCAACC
128 GTTATTTTTGAGGAGATACTCTAACC
155292 ATGTTTTCAT
Statistics
Matches: 340, Mismatches: 44, Indels: 14
0.85 0.11 0.04
Matches are distributed among these distances:
236 2 0.01
237 329 0.97
238 9 0.03
ACGTcount: A:0.27, C:0.23, G:0.14, T:0.36
Consensus pattern (236 bp):
TTTTATTTCTAAAACATCGATTTTCTACCATCGGGGATACTCTAACCCTGTTATTTTCGAGGGGA
TACTCTAACCCCAATTTTATTTCTAAAACATTGATTTTCTACCATCGGGATACTTCAACCCCGTT
ATTTTTGAGGAGATACTCTAACCCTGGTTTTATTTCTAAAACATCGATTTTTCACCATCAGGGAT
ACTCCAACCCTGTTATTTTCGAAGGGATACTCTAACCCCAA
Found at i:155624 original size:15 final size:15
Alignment explanation
Indices: 155604--155634 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
155594 AACGTATTTC
155604 TTTTCGTAGGGACCT
1 TTTTCGTAGGGACCT
155619 TTTTCGTAGGGACCT
1 TTTTCGTAGGGACCT
155634 T
1 T
155635 ATGCATTCAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.13, C:0.19, G:0.26, T:0.42
Consensus pattern (15 bp):
TTTTCGTAGGGACCT
Found at i:159499 original size:21 final size:21
Alignment explanation
Indices: 159473--159549 Score: 154
Period size: 21 Copynumber: 3.7 Consensus size: 21
159463 TTTTTGTCCA
159473 AATGTATCGATACATTTGTAG
1 AATGTATCGATACATTTGTAG
159494 AATGTATCGATACATTTGTAG
1 AATGTATCGATACATTTGTAG
159515 AATGTATCGATACATTTGTAG
1 AATGTATCGATACATTTGTAG
159536 AATGTATCGATACA
1 AATGTATCGATACA
159550 AGGTCCCAAC
Statistics
Matches: 56, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 56 1.00
ACGTcount: A:0.35, C:0.10, G:0.18, T:0.36
Consensus pattern (21 bp):
AATGTATCGATACATTTGTAG
Found at i:159630 original size:19 final size:21
Alignment explanation
Indices: 159587--159637 Score: 79
Period size: 19 Copynumber: 2.5 Consensus size: 21
159577 TTCAATAATT
*
159587 TGTATCGATACATTCAGTAAA
1 TGTATCGATACATTAAGTAAA
159608 TGTATCGATACA-TAAGT-AA
1 TGTATCGATACATTAAGTAAA
159627 TGTATCGATAC
1 TGTATCGATAC
159638 GGTGTATCGC
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
19 13 0.45
20 4 0.14
21 12 0.41
ACGTcount: A:0.37, C:0.14, G:0.16, T:0.33
Consensus pattern (21 bp):
TGTATCGATACATTAAGTAAA
Found at i:162405 original size:79 final size:76
Alignment explanation
Indices: 162056--162409 Score: 401
Period size: 76 Copynumber: 4.6 Consensus size: 76
162046 TTTCACCTCA
*** * *
162056 GGGATACTCCAATCCCGATTCCGTTTCCAAAACATCAATTTTTCTTCATCGGGGATACTCCAGCC
1 GGGATACTCCAATCCCGATTTTATTTCTAAAACATCAATTTTTC-T-ATCGGGGATACTCCAACC
* **
162121 CCGTTATTTCCGAG
64 CCATTATTT-TTAG
* *
162135 GGGACACTCCAATCCCGATTTTCTTTCTAAAACATCAATTTTT-TATCGGGGATACTCCAACCCC
1 GGGATACTCCAATCCCGATTTTATTTCTAAAACATCAATTTTTCTATCGGGGATACTCCAACCCC
*
162199 GTTATTTTTGAG
66 ATTATTTTT-AG
* * *
162211 GGGACACTCCAACCCCGATTTTGTTTCTAAAACATCAATTTTTC-ATCGGGGATACTCCAACCCC
1 GGGATACTCCAATCCCGATTTTATTTCTAAAACATCAATTTTTCTATCGGGGATACTCCAACCCC
162275 ATTATTTTT-G
66 ATTATTTTTAG
* * * ** *
162285 GGGATACTCCAACCCCGGTTTTATTTCTAAAATATTGATTTTTCATAATTGGGGATACTCCAACC
1 GGGATACTCCAATCCCGATTTTATTTCTAAAACATCAATTTTTC-T-ATCGGGGATACTCCAACC
*
162350 CCATTATTTTCTCG
64 CCATTATTTT-TAG
* * *
162364 GGGATACTCCAATCCCGATTTTATTTTTGAAACATCTA-TTTTCTAT
1 GGGATACTCCAATCCCGATTTTATTTCTAAAACATCAATTTTTCTAT
162410 AATGGGGACA
Statistics
Matches: 243, Mismatches: 25, Indels: 17
0.85 0.09 0.06
Matches are distributed among these distances:
74 39 0.16
76 99 0.41
77 29 0.12
78 6 0.02
79 70 0.29
ACGTcount: A:0.25, C:0.25, G:0.14, T:0.36
Consensus pattern (76 bp):
GGGATACTCCAATCCCGATTTTATTTCTAAAACATCAATTTTTCTATCGGGGATACTCCAACCCC
ATTATTTTTAG
Found at i:164518 original size:26 final size:25
Alignment explanation
Indices: 164469--164518 Score: 73
Period size: 26 Copynumber: 2.0 Consensus size: 25
164459 AAAAAAGGAT
* *
164469 AAAAGTAAAAAATGAGAAACACAAG
1 AAAAGTAAAAAATGAAAAAAACAAG
164494 AAAAGTAAAAAAATGAAAAAAACAA
1 AAAAGT-AAAAAATGAAAAAAACAA
164519 AATGAAGGAA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 6 0.27
26 16 0.73
ACGTcount: A:0.74, C:0.06, G:0.12, T:0.08
Consensus pattern (25 bp):
AAAAGTAAAAAATGAAAAAAACAAG
Found at i:165791 original size:30 final size:30
Alignment explanation
Indices: 165730--165791 Score: 79
Period size: 30 Copynumber: 2.1 Consensus size: 30
165720 CAACCTTTTC
* * *
165730 TTCAAAGTCCACGACTTAGTGACATCTCTT
1 TTCAAAGTCCACAACTTAGTGACACCCCTT
* *
165760 TTCAAAGTCCACAACTTTGTGGCACCCCTT
1 TTCAAAGTCCACAACTTAGTGACACCCCTT
165790 TT
1 TT
165792 AACCCTTTAG
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.24, C:0.29, G:0.13, T:0.34
Consensus pattern (30 bp):
TTCAAAGTCCACAACTTAGTGACACCCCTT
Found at i:165868 original size:62 final size:61
Alignment explanation
Indices: 165797--165991 Score: 205
Period size: 62 Copynumber: 3.2 Consensus size: 61
165787 CTTTTAACCC
* * *
165797 TTTAGTCCTCAAAGAGGAAGATGTTTTTTTCTTTTCAAAGCCCACACGAGTTGGTAGCACCA
1 TTTAGTCCTCAAAGAGCAAGA-GTCTTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCACCA
* * * * *
165859 TTTAGTCCTCAAAGAGCCAGA-ACCTTTTCTTCTTCAAAGCCCACATGAGTTGGTGGCACCG
1 TTTAGTCCTCAAAGAGCAAGAGTCTTTTTCTT-TTCAAAGCCCACACGAGTTGGTGGCACCA
* * * * * **
165920 TTTAGTCTTCAAAGAGCAGGACGTCTTTTTCTTTCTC-CAGCCTACACAAGTTGGTGGCACTT
1 TTTAGTCCTCAAAGAGCAAGA-GTCTTTTTCTTT-TCAAAGCCCACACGAGTTGGTGGCACCA
165982 TTTAGTCCTC
1 TTTAGTCCTC
165992 GCACCCTTTA
Statistics
Matches: 109, Mismatches: 20, Indels: 8
0.80 0.15 0.06
Matches are distributed among these distances:
60 7 0.06
61 44 0.40
62 48 0.44
63 10 0.09
ACGTcount: A:0.24, C:0.25, G:0.19, T:0.33
Consensus pattern (61 bp):
TTTAGTCCTCAAAGAGCAAGAGTCTTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCACCA
Found at i:165909 original size:61 final size:60
Alignment explanation
Indices: 165823--165936 Score: 183
Period size: 61 Copynumber: 1.9 Consensus size: 60
165813 GAAGATGTTT
165823 TTTTCTTTTCAAAGCCCACACGAGTTGGTAGCACCATTTAGTCCTCAAAGAGCCAGAACC
1 TTTTCTTTTCAAAGCCCACACGAGTTGGTAGCACCATTTAGTCCTCAAAGAGCCAGAACC
* * * *
165883 TTTTCTTCTTCAAAGCCCACATGAGTTGGTGGCACCGTTTAGTCTTCAAAGAGC
1 TTTTCTT-TTCAAAGCCCACACGAGTTGGTAGCACCATTTAGTCCTCAAAGAGC
165937 AGGACGTCTT
Statistics
Matches: 49, Mismatches: 4, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
60 7 0.14
61 42 0.86
ACGTcount: A:0.25, C:0.26, G:0.18, T:0.30
Consensus pattern (60 bp):
TTTTCTTTTCAAAGCCCACACGAGTTGGTAGCACCATTTAGTCCTCAAAGAGCCAGAACC
Found at i:166049 original size:140 final size:139
Alignment explanation
Indices: 165853--166131 Score: 332
Period size: 140 Copynumber: 2.0 Consensus size: 139
165843 CGAGTTGGTA
* *
165853 GCACCATTTAGTCCTCAAAGAGCCAGAACCTTTTCTTCTTCAAAGCCCACATGAGTTGGTGGCAC
1 GCACCATTTAGTCCTCAAAGAGCAAGAACCTTTTCTTCTTCAAAGCCCACACGAGTTGGTGGCAC
* * ** **
165918 CGTTTAGT-CTTCAAAGAGCAGGACGTCTTTTTC-TTTCTCCAGCCTACACAAGTTGGTGGCA-C
66 CCTTTAGTCCTT-AAAGAGCAAGACACCTTTTTCATTTC-AAAGCCTACACAAGTTGGTGGCATC
*
165980 TTTTTAGTCCTC
129 -CTTTAGTCCTC
* * * * *
165992 GCACCCTTTAGTCCTCAGAGAGCAAGATGCCTTTTTCTT-TTCAAAGCCCGCACGAGTTGGTGGT
1 GCACCATTTAGTCCTCAAAGAGCAAGA-ACC-TTTTCTTCTTCAAAGCCCACACGAGTTGGTGGC
* * *
166056 ACCCTTTTGTCCTTAAAGAGTAAGACACCTTTTTCATTTCAAAGCCTACACGAGTTGGTGGCATC
64 ACCCTTTAGTCCTTAAAGAGCAAGACACCTTTTTCATTTCAAAGCCTACACAAGTTGGTGGCATC
166121 CTTTAGTCCTC
129 CTTTAGTCCTC
166132 AAATAGCAGG
Statistics
Matches: 118, Mismatches: 17, Indels: 9
0.82 0.12 0.06
Matches are distributed among these distances:
139 24 0.20
140 79 0.67
141 15 0.13
ACGTcount: A:0.22, C:0.27, G:0.19, T:0.32
Consensus pattern (139 bp):
GCACCATTTAGTCCTCAAAGAGCAAGAACCTTTTCTTCTTCAAAGCCCACACGAGTTGGTGGCAC
CCTTTAGTCCTTAAAGAGCAAGACACCTTTTTCATTTCAAAGCCTACACAAGTTGGTGGCATCCT
TTAGTCCTC
Found at i:166068 original size:78 final size:78
Alignment explanation
Indices: 165914--166068 Score: 170
Period size: 78 Copynumber: 2.0 Consensus size: 78
165904 TGAGTTGGTG
* * * * * *
165914 GCACCGTTTAGTCTTCAAAGAGCAGGACGTCTTTTTCTTTCTCCAGCCTACACAAGTTGGTGGCA
1 GCACCCTTTAGTCCTCAAAGAGCAAGACGCCTTTTTCTTTCTCAAGCCCACACAAGTTGGTGGCA
*
165979 CTTTTTAGTCCTC
66 CCTTTTAGTCCTC
* * * * *
165992 GCACCCTTTAGTCCTCAGAGAGCAAGATGCCTTTTTCTTT-TCAAAGCCCGCACGAGTTGGTGGT
1 GCACCCTTTAGTCCTCAAAGAGCAAGACGCCTTTTTCTTTCTC-AAGCCCACACAAGTTGGTGGC
166056 ACCCTTTT-GTCCT
65 A-CCTTTTAGTCCT
166069 TAAAGAGTAA
Statistics
Matches: 63, Mismatches: 12, Indels: 4
0.80 0.15 0.05
Matches are distributed among these distances:
77 2 0.03
78 56 0.89
79 5 0.08
ACGTcount: A:0.19, C:0.28, G:0.20, T:0.34
Consensus pattern (78 bp):
GCACCCTTTAGTCCTCAAAGAGCAAGACGCCTTTTTCTTTCTCAAGCCCACACAAGTTGGTGGCA
CCTTTTAGTCCTC
Found at i:166096 original size:62 final size:62
Alignment explanation
Indices: 165992--166443 Score: 562
Period size: 62 Copynumber: 7.3 Consensus size: 62
165982 TTTAGTCCTC
*
165992 GCACCCTTTAGTCCTCAGAGAGCAAGATGCCTTTTTCTTTTCAAAGCCCGCACGAGTTGGTG
1 GCACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCTTTTCAAAGCCCGCACGAGTTGGTG
* * * * ** * **
166054 GTACCCTTTTGTCCTTAAAGAGTAAGACACCTTTTTCATTTCAAAGCCTACACGAGTTGGTG
1 GCACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCTTTTCAAAGCCCGCACGAGTTGGTG
* * * * *** *
166116 GCATCCTTTAGTCCTCAAATAGCAGGATGCCTTTTTCTTTCCAAAGCCAATATGAGTTGGTG
1 GCACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCTTTTCAAAGCCCGCACGAGTTGGTG
* * * *
166178 GCACCCTTTAGTCCTCAAATAGCAAGACGCCTTTTTCTTTTTAAAGCCCACACGAGTTGGTG
1 GCACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCTTTTCAAAGCCCGCACGAGTTGGTG
* *
166240 GCACCCTTTAGTCCTCAAAGAGCAAGATGTCTTTTTCTTTTCAAAGCCCGCACGAGTTTGTG
1 GCACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCTTTTCAAAGCCCGCACGAGTTGGTG
* * * * ** *
166302 GCACCCTTTAGTCCTCGAAGAGTAGGATGTCTTTTTCTTTTCAAAGCCCGCATAAGTTGATG
1 GCACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCTTTTCAAAGCCCGCACGAGTTGGTG
* * * * * *
166364 GCACCCTTTAATCCTCAAAGAGTAGGATACCTTTTTCTTTTTAAAGCCCGCATGAGTTGGTG
1 GCACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCTTTTCAAAGCCCGCACGAGTTGGTG
*
166426 GAACCCTTTAGTCCTCAA
1 GCACCCTTTAGTCCTCAA
166444 CGAACAGGAC
Statistics
Matches: 336, Mismatches: 54, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
62 336 1.00
ACGTcount: A:0.24, C:0.25, G:0.19, T:0.32
Consensus pattern (62 bp):
GCACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCTTTTCAAAGCCCGCACGAGTTGGTG
Found at i:166176 original size:202 final size:201
Alignment explanation
Indices: 165793--166193 Score: 511
Period size: 202 Copynumber: 2.0 Consensus size: 201
165783 ACCCCTTTTA
* **
165793 ACCCTTTAGTCCTCAAAGAGGAAGATGTTTTTTTCTTTTCAAAGCCCACACGAGTTGGTAGCACC
1 ACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCTTTTCAAAGCCCACACGAGTTGGTAGCACC
* * *
165858 ATTTAGTCCTCAAAGAGCCAGAACCTTTTCTTCTTCAAAGCCCACATGAGTTGGTGGCACCGTTT
66 ATTTAGTCCTCAAAGAGCAAGAACCTTTTCATCTTCAAAGCCCACACGAGTTGGTGGCACCGTTT
* * * * **
165923 AGTCTTCAAAGAGCAGGACGTCTTTTTCTTTCTCCAGCCTACACAAGTTGGTGGCACTTTTTAGT
131 AGTCCTCAAAGAGCAGGACGCCTTTTTCTTTCTCAAGCCAACACAAGTTGGTGGCACCCTTTAGT
165988 CCTCGC
196 CCTCGC
* * * *
165994 ACCCTTTAGTCCTCAGAGAGCAAGATGCCTTTTTCTTTTCAAAGCCCGCACGAGTTGGTGGTACC
1 ACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCTTTTCAAAGCCCACACGAGTTGGTAGCACC
* * * * *
166059 CTTTTGTCCTTAAAGAGTAAGACACCTTTTTCAT-TTCAAAGCCTACACGAGTTGGTGGCATCC-
66 ATTTAGTCCTCAAAGAGCAAGA-ACC-TTTTCATCTTCAAAGCCCACACGAGTTGGTGGCA-CCG
* * * **
166122 TTTAGTCCTCAAATAGCAGGATGCCTTTTTCTTTC-CAAAGCCAATATGAGTTGGTGGCACCCTT
128 TTTAGTCCTCAAAGAGCAGGACGCCTTTTTCTTTCTC-AAGCCAACACAAGTTGGTGGCACCCTT
166186 TAGTCCTC
192 TAGTCCTC
166194 AAATAGCAAG
Statistics
Matches: 170, Mismatches: 26, Indels: 7
0.84 0.13 0.03
Matches are distributed among these distances:
201 76 0.45
202 86 0.51
203 8 0.05
ACGTcount: A:0.23, C:0.26, G:0.19, T:0.32
Consensus pattern (201 bp):
ACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCTTTTCAAAGCCCACACGAGTTGGTAGCACC
ATTTAGTCCTCAAAGAGCAAGAACCTTTTCATCTTCAAAGCCCACACGAGTTGGTGGCACCGTTT
AGTCCTCAAAGAGCAGGACGCCTTTTTCTTTCTCAAGCCAACACAAGTTGGTGGCACCCTTTAGT
CCTCGC
Found at i:166520 original size:42 final size:42
Alignment explanation
Indices: 166468--166694 Score: 136
Period size: 42 Copynumber: 5.3 Consensus size: 42
166458 TTTCTTTTCC
* *
166468 CCTTTGTCCTCAAAAAGTAGGATACACTTTATTACCTTTTTT
1 CCTTTGTCCTCAAAAAGCAAGATACACTTTATTACCTTTTTT
* * *
166510 CCTTTGTCCTCAAAGAGCAAGATGCACTTTATTTCCTTTTTT
1 CCTTTGTCCTCAAAAAGCAAGATACACTTTATTACCTTTTTT
** * * * * * * *
166552 TTTTTGGTCCTTAAAGAGCATGACACA-TTTCGTT-CTCCTTTTC
1 CCTTT-GTCCTCAAAAAGCAAGATACACTTT-ATTAC-CTTTTTT
* * * * ** *
166595 CCTTTATCTTCAAAGAGCATGGCACA-TTTCATTTCCTTCTTTT
1 CCTTTGTCCTCAAAAAGCAAGATACACTTT-ATTACCTT-TTTT
** * *
166638 CCCTTTGTCCTCAAAAAGCAAGACGCACTTTATTTCCTTTTCT
1 -CCTTTGTCCTCAAAAAGCAAGATACACTTTATTACCTTTTTT
* *
166681 CCTTTATCTTCAAA
1 CCTTTGTCCTCAAA
166695 GTGCAGGGCG
Statistics
Matches: 146, Mismatches: 32, Indels: 14
0.76 0.17 0.07
Matches are distributed among these distances:
42 81 0.55
43 34 0.23
44 28 0.19
45 3 0.02
ACGTcount: A:0.22, C:0.25, G:0.10, T:0.42
Consensus pattern (42 bp):
CCTTTGTCCTCAAAAAGCAAGATACACTTTATTACCTTTTTT
Found at i:166707 original size:42 final size:42
Alignment explanation
Indices: 166492--166720 Score: 151
Period size: 42 Copynumber: 5.4 Consensus size: 42
166482 AAGTAGGATA
* * * * **
166492 CACTTTATTACCTTTTTTCCTTTGTCCTCAAAGAGCAAGATG
1 CACTTTATTTCCTTTTCTCCTTTATCTTCAAAGAGCAAGGCG
* ** * * * *
166534 CACTTTATTTCCTTTTTTTTTTTGGTCCTT-AAAGAGCATGACA
1 CACTTTATTTCCTTTTCTCCTTT-AT-CTTCAAAGAGCAAGGCG
* * *
166577 CA-TTTCGTTCTCCTTTTC-CCTTTATCTTCAAAGAGCATGGCA
1 CACTTT-ATT-TCCTTTTCTCCTTTATCTTCAAAGAGCAAGGCG
* * * * *
166619 CA-TTTCATTTCCTTCTTTTCCCTTTGTCCTCAAAAAGCAAGACG
1 CACTTT-ATTTCCTT-TTCT-CCTTTATCTTCAAAGAGCAAGGCG
* *
166663 CACTTTATTTCCTTTTCTCCTTTATCTTCAAAGTGCAGGGCG
1 CACTTTATTTCCTTTTCTCCTTTATCTTCAAAGAGCAAGGCG
*
166705 CACTTCATTTCCTTTT
1 CACTTTATTTCCTTTT
166721 TTCTTTTGTC
Statistics
Matches: 149, Mismatches: 29, Indels: 18
0.76 0.15 0.09
Matches are distributed among these distances:
41 8 0.05
42 79 0.53
43 22 0.15
44 37 0.25
45 3 0.02
ACGTcount: A:0.20, C:0.26, G:0.11, T:0.43
Consensus pattern (42 bp):
CACTTTATTTCCTTTTCTCCTTTATCTTCAAAGAGCAAGGCG
Found at i:166754 original size:86 final size:84
Alignment explanation
Indices: 166470--166733 Score: 271
Period size: 86 Copynumber: 3.1 Consensus size: 84
166460 TCTTTTCCCC
* * * * * * **
166470 TTTGTCCTCAAAAAGTAGGATACACTTTATTACCTTTTTTCCTTTGTCCTCAAAGAGCAAGATGC
1 TTTGTCCTCAAAAAGCAGGACACACTTTATTTCCTTTTCTCCTTTATCTTCAAAGAGCAAGGCGC
* *
166535 ACTTTATTTCCTTTTTTTT
66 ACTTCATTTCCTTTTTTCT
* * * * *
166554 TTTGGTCCTTAAAGAGCATGACACA-TTTCGTTCTCCTTTTC-CCTTTATCTTCAAAGAGCATGG
1 TTT-GTCCTCAAAAAGCAGGACACACTTT-ATT-TCCTTTTCTCCTTTATCTTCAAAGAGCAAGG
* * *
166617 CACATTTCATTTCCTTCTTTTCCC
63 CGCACTTCATTTCCTT-TTTT-CT
* * * *
166641 TTTGTCCTCAAAAAGCAAGACGCACTTTATTTCCTTTTCTCCTTTATCTTCAAAGTGCAGGGCGC
1 TTTGTCCTCAAAAAGCAGGACACACTTTATTTCCTTTTCTCCTTTATCTTCAAAGAGCAAGGCGC
166706 ACTTCATTTCCTTTTTTCT
66 ACTTCATTTCCTTTTTTCT
166725 TTTGTCCTC
1 TTTGTCCTC
166734 GAAGAGTAGG
Statistics
Matches: 145, Mismatches: 28, Indels: 14
0.78 0.15 0.07
Matches are distributed among these distances:
84 16 0.11
85 60 0.41
86 63 0.43
87 6 0.04
ACGTcount: A:0.20, C:0.25, G:0.11, T:0.43
Consensus pattern (84 bp):
TTTGTCCTCAAAAAGCAGGACACACTTTATTTCCTTTTCTCCTTTATCTTCAAAGAGCAAGGCGC
ACTTCATTTCCTTTTTTCT
Found at i:167546 original size:50 final size:49
Alignment explanation
Indices: 167487--167630 Score: 182
Period size: 50 Copynumber: 2.9 Consensus size: 49
167477 TTCGACAATT
*
167487 TGTATCGATACATTCTTCATTGTA-CTGATACATTCTGGGTTTTACCCAAA
1 TGTATCGATACATT-TTCATTGTATC-GATACATTCTGAGTTTTACCCAAA
* *
167537 TGTATCGATACATTTTTCATTGTATCGATACATTCTGAGTTTTACCTAGA
1 TGTATCGATACA-TTTTCATTGTATCGATACATTCTGAGTTTTACCCAAA
* * *
167587 TGTATTGATACATTTCTCAATGTATCGATACATTCATGAATTTT
1 TGTATCGATACATTT-TCATTGTATCGATACATTC-TGAGTTTT
167631 TTACCATTTT
Statistics
Matches: 84, Mismatches: 6, Indels: 7
0.87 0.06 0.07
Matches are distributed among these distances:
49 3 0.04
50 71 0.85
51 10 0.12
ACGTcount: A:0.27, C:0.17, G:0.13, T:0.43
Consensus pattern (49 bp):
TGTATCGATACATTTTCATTGTATCGATACATTCTGAGTTTTACCCAAA
Found at i:169895 original size:79 final size:79
Alignment explanation
Indices: 169776--170332 Score: 506
Period size: 78 Copynumber: 7.1 Consensus size: 79
169766 TTCATTGATG
* *
169776 GTTTTATTTCTAAAATACTGA-TTTTCTACTATC-GAGGATACTCTAACCCCGTTATTTTCGAGG
1 GTTTTATTTCTAAAACACTGATTTTTC-ACCATCGGA-GATACTCTAACCCCGTTATTTTCGAGG
169839 GGATACTCTAACCCCA
64 GGATACTCTAACCCCA
* * *
169855 ATTTTATTTCTAAAACATTGATTTTTCACCATCGGAGATACTTTAACCCCGTTATTTTCGAGGGG
1 GTTTTATTTCTAAAACACTGATTTTTCACCATCGGAGATACTCTAACCCCGTTATTTTCGAGGGG
* **
169920 ATACTCGAA-CCTT
66 ATACTCTAACCCCA
* * * * * *
169933 GATTTTATTTCTAAAACACTGATTTTCCACTATCAGA-ATACTCTAACCCTGATATTTCCGAGGG
1 G-TTTTATTTCTAAAACACTGATTTTTCACCATCGGAGATACTCTAACCCCGTTATTTTCGAGGG
***
169997 GATACTAC-AACCTTG
65 GATACT-CTAACCCCA
* * ** * * * * *
170012 GTTTTATTTCTAAGACACTAATTTTTCACCGCCGGGGATACTCCAACCCCATTATTTTTGAGAGG
1 GTTTTATTTCTAAAACACTGATTTTTCACCATCGGAGATACTCTAACCCCGTTATTTTCGAGGGG
*
170077 ATACTTTAA-CCCA
66 ATACTCTAACCCCA
* * * * * *
170090 GTTTTGTTTCTAAAACACTAATTTTTCACCATCAGG-GATACTCCAACCTCGCTATTTTCAAGGG
1 GTTTTATTTCTAAAACACTGATTTTTCACCATC-GGAGATACTCTAACCCCGTTATTTTCGAGGG
* *
170154 GATACTCCAA-CCCG
65 GATACTCTAACCCCA
* ** * * *
170168 GTTTTATTTCTAAAACA-TCGATTTTTCACCATCGGGGATACTCTAACCTTGTTATTTACAAGAG
1 GTTTTATTTCTAAAACACT-GATTTTTCACCATCGGAGATACTCTAACCCCGTTATTTTCGAGGG
* *
170232 GATACTCCAACCCTA
65 GATACTCTAACCCCA
* * * * * **
170247 GTTTTATTTCTAAAACACCGA-TCTTCGACAATCGGGGATCCTCCGACCCCGTTA-TTTCTGAGG
1 GTTTTATTTCTAAAACACTGATTTTTC-ACCATCGGAGATACTCTAACCCCGTTATTTTC-GAGG
170310 GGATACTCTAACCCCA
64 GGATACTCTAACCCCA
*
170326 TTTTTAT
1 GTTTTAT
170333 CTCCAAAATA
Statistics
Matches: 390, Mismatches: 74, Indels: 28
0.79 0.15 0.06
Matches are distributed among these distances:
77 3 0.01
78 192 0.49
79 188 0.48
80 7 0.02
ACGTcount: A:0.27, C:0.24, G:0.14, T:0.35
Consensus pattern (79 bp):
GTTTTATTTCTAAAACACTGATTTTTCACCATCGGAGATACTCTAACCCCGTTATTTTCGAGGGG
ATACTCTAACCCCA
Found at i:170037 original size:157 final size:154
Alignment explanation
Indices: 169777--170264 Score: 532
Period size: 157 Copynumber: 3.1 Consensus size: 154
169767 TCATTGATGG
* * * *
169777 TTTTATTTCTAAAATACTGATTTTCTACTATCGAGGATACTCTAACCCCGTTATTTTCGAGGGGA
1 TTTTATTTCTAAAACACTGATTTTCCACTATC-AGGATACTCTAACCCTGATATTTTCGAGGGGA
** * *
169842 TACTCTAACCCCAATTTTATTTCTAAAACATTGATTTTTCACCATCGGAGATACTTTAACCCCGT
65 TACTC-AA-CCCGGTTTTATTTCTAAAACA-TGATTTTTCACCATCGGGGATACTCTAACCCCGT
* * *
169907 TATTTTCGAGGGGATACTCGAACCTTGA
127 TATTTTCGAGAGGATACTCCAACCCTGA
* *
169935 TTTTATTTCTAAAACACTGATTTTCCACTATCAGAATACTCTAACCCTGATATTTCCGAGGGGAT
1 TTTTATTTCTAAAACACTGATTTTCCACTATCAGGATACTCTAACCCTGATATTTTCGAGGGGAT
* * * ** * *
170000 ACTACAACCTTGGTTTTATTTCTAAGACACTAATTTTTCACCGCCGGGGATACTCCAACCCCATT
66 ACT-CAACC-CGGTTTTATTTCTAAAACA-TGATTTTTCACCATCGGGGATACTCTAACCCCGTT
* ** *
170065 ATTTTTGAGAGGATACTTTAACCCAG-
128 ATTTTCGAGAGGATACTCCAACCCTGA
* * * * * * *
170091 TTTTGTTTCTAAAACACTAATTTTTCACCATCAGGGATACTCCAA-CCTCGCTATTTTCAAGGGG
1 TTTTATTTCTAAAACACTGATTTTCCACTATCA-GGATACTCTAACCCT-GATATTTTCGAGGGG
**
170155 ATACTCCAACCCGGTTTTATTTCTAAAACATCGATTTTTCACCATCGGGGATACTCTAACCTTGT
64 ATACT-CAACCCGGTTTTATTTCTAAAACAT-GATTTTTCACCATCGGGGATACTCTAACCCCGT
* *
170220 TATTTACAAGAGGATACTCCAACCCT-A
127 TATTTTCGAGAGGATACTCCAACCCTGA
170247 GTTTTATTTCTAAAACAC
1 -TTTTATTTCTAAAACAC
170265 CGATCTTCGA
Statistics
Matches: 273, Mismatches: 50, Indels: 15
0.81 0.15 0.04
Matches are distributed among these distances:
155 1 0.00
156 97 0.36
157 144 0.53
158 31 0.11
ACGTcount: A:0.28, C:0.23, G:0.13, T:0.36
Consensus pattern (154 bp):
TTTTATTTCTAAAACACTGATTTTCCACTATCAGGATACTCTAACCCTGATATTTTCGAGGGGAT
ACTCAACCCGGTTTTATTTCTAAAACATGATTTTTCACCATCGGGGATACTCTAACCCCGTTATT
TTCGAGAGGATACTCCAACCCTGA
Found at i:176367 original size:42 final size:41
Alignment explanation
Indices: 176316--176839 Score: 286
Period size: 42 Copynumber: 12.5 Consensus size: 41
176306 TCAAACCCAA
* * *
176316 GAGAGTTCCTTATCTTTCGTCTGCCCGTTGGCTCAGACTCGG
1 GAGACTTCCTTATCTTTCGTCTGCCCGTCGGCTTAGAC-CGG
* *** * * *
176358 GAGACTTCCTTATCTTTCGTCTACTTATTGGCTCAGACCCAG
1 GAGACTTCCTTATCTTTCGTCTGCCCGTCGGCTTAGA-CCGG
*
176400 GAGACTTCCTTATCTTTCGTCTGCCCGTCGACTTAGACCCGG
1 GAGACTTCCTTATCTTTCGTCTGCCCGTCGGCTTAGA-CCGG
* * * ** * *
176442 GAGACTTTCTTATCTTTCATCTACCTATCAGCTTAAACCTGG
1 GAGACTTCCTTATCTTTCGTCTGCCCGTCGGCTTAGACC-GG
* * * ** *
176484 GGGACTTTCTTATCTTTCGTCTACCCGTCAACTTAGACTTGG
1 GAGACTTCCTTATCTTTCGTCTGCCCGTCGGCTTAGAC-CGG
* * ** * *
176526 GAGACCT-CTTCATCTTTCGTCTGCCCATCATCTCAGACCTAG
1 GAGACTTCCTT-ATCTTTCGTCTGCCCGTCGGCTTAGACC-GG
* * ** *
176568 GAGACTTCTTTATCTTT-GTCTACCAATCGGCTTAGACCTGA
1 GAGACTTCCTTATCTTTCGTCTGCCCGTCGGCTTAGACC-GG
* * * * * *
176609 GAGACTT-CTTCATCCTTCATTTGCCCGTCGACTCAGACCTAG
1 GAGACTTCCTT-ATCTTTCGTCTGCCCGTCGGCTTAGACC-GG
* * * *
176651 GAGACTTCTTTATCTATCGTCTGCCCGTCAGCTTAGACCCGA
1 GAGACTTCCTTATCTTTCGTCTGCCCGTCGGCTTAGA-CCGG
* * * * * **
176693 GAGACTTCTTTATCTTTCATCTACCCATCAGCTTAGACCCAT
1 GAGACTTCCTTATCTTTCGTCTGCCCGTCGGCTTAGA-CCGG
* * * * *
176735 AAGACTACCTTATCTTTCATCTGCTCGTCGG-TTGAGAGTCGG
1 GAGACTTCCTTATCTTTCGTCTGCCCGTCGGCTT-AGA-CCGG
* * * * *
176777 GAGACTT-TTTCATCTTTCATCTGCCTGTCAG-TTAGACCTGA
1 GAGACTTCCTT-ATCTTTCGTCTGCCCGTCGGCTTAGACC-GG
*
176818 GAGATTTCCTTCATCTTTCGTC
1 GAGACTTCCTT-ATCTTTCGTC
176840 AACTTGTCGA
Statistics
Matches: 373, Mismatches: 95, Indels: 28
0.75 0.19 0.06
Matches are distributed among these distances:
40 3 0.01
41 48 0.13
42 315 0.84
43 7 0.02
ACGTcount: A:0.19, C:0.29, G:0.18, T:0.35
Consensus pattern (41 bp):
GAGACTTCCTTATCTTTCGTCTGCCCGTCGGCTTAGACCGG
Found at i:176416 original size:84 final size:83
Alignment explanation
Indices: 176301--176798 Score: 428
Period size: 84 Copynumber: 5.9 Consensus size: 83
176291 TGTCTACCTG
* * * * *
176301 TCAGCTCAAACCCAAGAGAGTTCCTTATCTTTCGTCTGCCCGTTGGCTCAGACTCGGGAGACTTC
1 TCAGCTCAGACCCAGGAGACTTCCTTATCTTTCGTCTGCCCGTCGGCTTAGACTCGGGAGACTT-
* **
176366 CTTATCTTTCGTCTACTTA
65 CTTATCTTTCATCTACCCA
** * *
176385 TTGGCTCAGACCCAGGAGACTTCCTTATCTTTCGTCTGCCCGTCGACTTAGACCCGGGAGACTTT
1 TCAGCTCAGACCCAGGAGACTTCCTTATCTTTCGTCTGCCCGTCGGCTTAGACTCGGGAGAC-TT
*
176450 CTTATCTTTCATCTACCTA
65 CTTATCTTTCATCTACCCA
* * ** * * * ** * *
176469 TCAGCTTAAACCTGGGGGACTTTCTTATCTTTCGTCTACCCGTCAACTTAGACTTGGGAGACCTC
1 TCAGCTCAGACCCAGGAGACTTCCTTATCTTTCGTCTGCCCGTCGGCTTAGACTCGGGAGACTTC
* *
176534 TTCATCTTTCGTCTGCCCA
66 TT-ATCTTTCATCTACCCA
* * * * ** *
176553 TCATCTCAGACCTAGGAGACTTCTTTATCTTT-GTCTACCAATCGGCTTAGAC-CTGAGAGACTT
1 TCAGCTCAGACCCAGGAGACTTCCTTATCTTTCGTCTGCCCGTCGGCTTAGACTC-GGGAGACTT
* * * *
176616 CTTCATCCTTCATTTGCCCG
65 CTT-ATCTTTCATCTACCCA
* * * * * *
176636 TC-GACTCAGACCTAGGAGACTTCTTTATCTATCGTCTGCCCGTCAGCTTAGACCCGAGAGACTT
1 TCAG-CTCAGACCCAGGAGACTTCCTTATCTTTCGTCTGCCCGTCGGCTTAGACTCGGGAGACTT
176700 CTTTATCTTTCATCTACCCA
65 C-TTATCTTTCATCTACCCA
* ** * * * *
176720 TCAGCTTAGACCCATAAGACTACCTTATCTTTCATCTGCTCGTCGG-TTGAGAGTCGGGAGACTT
1 TCAGCTCAGACCCAGGAGACTTCCTTATCTTTCGTCTGCCCGTCGGCTT-AGACTCGGGAGACTT
*
176784 TTTCATCTTTCATCT
65 CTT-ATCTTTCATCT
176799 GCCTGTCAGT
Statistics
Matches: 335, Mismatches: 69, Indels: 20
0.79 0.16 0.05
Matches are distributed among these distances:
83 76 0.23
84 253 0.76
85 6 0.02
ACGTcount: A:0.19, C:0.29, G:0.17, T:0.34
Consensus pattern (83 bp):
TCAGCTCAGACCCAGGAGACTTCCTTATCTTTCGTCTGCCCGTCGGCTTAGACTCGGGAGACTTC
TTATCTTTCATCTACCCA
Found at i:178200 original size:163 final size:164
Alignment explanation
Indices: 177861--178516 Score: 788
Period size: 163 Copynumber: 4.0 Consensus size: 164
177851 AAATTTTTTT
* * * *
177861 AAATATTACCATTTATTTCATATTAAATTAGTTTTTAAAAATTAATTCATTTTCATGAGTTTTTG
1 AAATATTATCATTTATTTCATATTAAATCAGTTTTCAAAAATCAATTCATTTTCATGAGTTTTTG
* *** *
177926 ATTTTTTTTCCTTGAAACTTTCTTTTTTCTGAAATATAATATTTTCTACTCCGTAAATTTTTTTG
66 A-TTTTTTTCCTTGAAAC--TCTTTTTT-TTAAATACGGTATTTTCTACTTCGTAAATTTTTTTG
* *
177991 AGGGGATTTCTCTCAGTTTTCAATTTTTAAATTTCATC
127 AGGGGATTTTTCTCAGTTTTAAATTTTTAAATTTCATC
* * *
178029 AAATATTATCATGTATTTTATATTAAATCCA-TTTTTAAAAATCAATTCATTTTCATGAGTTTTT
1 AAATATTATCATTTATTTCATATTAAAT-CAGTTTTCAAAAATCAATTCATTTTCATGAGTTTTT
* * *
178093 GA-TTTTTTCCTTGAAACTCTTTTTTTTAAATACGGTATTTTTTTCTTCGTAAATTTTTTTAAGG
65 GATTTTTTTCCTTGAAACTCTTTTTTTTAAATACGGTATTTTCTACTTCGTAAATTTTTTTGAGG
* *
178157 GGATTTTTCTCAGTTTTTAATTTTTAAATCTCATC
130 GGATTTTTCTCAGTTTTAAATTTTTAAATTTCATC
* * *
178192 AAATATTATCATTTATTTCATATTAAATTAGTTTTCAAAAATTAATTCATTTTCATGAGTTTTTT
1 AAATATTATCATTTATTTCATATTAAATCAGTTTTCAAAAATCAATTCATTTTCATGAGTTTTTG
* *
178257 ATTTTTTTCCTTGAAACTCCTTTTTTTTCAAAATACGGTATTTTCTAGTTCATAAATTTTTTTGA
66 ATTTTTTTCCTTGAAACT-CTTTTTTTT--AAATACGGTATTTTCTACTTCGTAAATTTTTTTGA
**
178322 GGGGATTTTTCTTGGTTTTAAATTTTTAAATTTCATC
128 GGGGATTTTTCTCAGTTTTAAATTTTTAAATTTCATC
*
178359 AAATATTATCATTTATTTCATATTAAATCAGTTTTCAAAAATTC-ATTCATTTTCATTTA-TTTT
1 AAATATTATCATTTATTTCATATTAAATCAGTTTTCAAAAA-TCAATTCATTTTCA-TGAGTTTT
* * * * * * *
178422 T-ATTTTTCT-GTTGAAATTCCCTTTTTTTTAAGAAACTG-AGTTTTCTCCTCCGTAAATTTTTT
64 TGATTTTTTTCCTTGAAA--CTCTTTTTTTTAA-ATACGGTA-TTTTCTACTTCGTAAATTTTTT
* * *
178484 CGAGGGGATTTTTCT-TGGTTTAGAATTTTTAAA
125 TGAGGGGATTTTTCTCAGTTTTA-AATTTTTAAA
178517 ACTCATATAA
Statistics
Matches: 429, Mismatches: 46, Indels: 29
0.85 0.09 0.06
Matches are distributed among these distances:
162 1 0.00
163 121 0.28
164 32 0.07
165 61 0.14
166 31 0.07
167 120 0.28
168 62 0.14
169 1 0.00
ACGTcount: A:0.28, C:0.11, G:0.08, T:0.53
Consensus pattern (164 bp):
AAATATTATCATTTATTTCATATTAAATCAGTTTTCAAAAATCAATTCATTTTCATGAGTTTTTG
ATTTTTTTCCTTGAAACTCTTTTTTTTAAATACGGTATTTTCTACTTCGTAAATTTTTTTGAGGG
GATTTTTCTCAGTTTTAAATTTTTAAATTTCATC
Found at i:178360 original size:167 final size:165
Alignment explanation
Indices: 177861--178516 Score: 808
Period size: 167 Copynumber: 4.0 Consensus size: 165
177851 AAATTTTTTT
* * *
177861 AAATATTACCATTTATTTCATATTAAATTAGTTTTTAAAAATTAATTCATTTTCATGAGTTTTTG
1 AAATATTATCATTTATTTCATATTAAATCAGTTTTCAAAAATTAATTCATTTTCATGAGTTTTTG
* * ***
177926 ATTTTTTTTCCTTGAAACTTTCTTTTTTCTGAAATATAATATTTTCTACTCCGTAAATTTTTTTG
66 A-TTTTTTTCCTTGAAAC--TCTTTTTTTTAAAATACGGTATTTTCTACTCCGTAAATTTTTTTG
* *
177991 AGGGGATTTCTCTCAGTTTTCAATTTTTAAATTTCATC
128 AGGGGATTTTTCTCAGTTTTAAATTTTTAAATTTCATC
* * * *
178029 AAATATTATCATGTATTTTATATTAAATCCA-TTTTTAAAAATCAATTCATTTTCATGAGTTTTT
1 AAATATTATCATTTATTTCATATTAAAT-CAGTTTTCAAAAATTAATTCATTTTCATGAGTTTTT
* * * *
178093 GA-TTTTTTCCTTGAAACTCTTTTTTTT-AAATACGGTATTTTTTTCTTCGTAAATTTTTTTAAG
65 GATTTTTTTCCTTGAAACTCTTTTTTTTAAAATACGGTATTTTCTACTCCGTAAATTTTTTTGAG
* *
178156 GGGATTTTTCTCAGTTTTTAATTTTTAAATCTCATC
130 GGGATTTTTCTCAGTTTTAAATTTTTAAATTTCATC
* *
178192 AAATATTATCATTTATTTCATATTAAATTAGTTTTCAAAAATTAATTCATTTTCATGAGTTTTTT
1 AAATATTATCATTTATTTCATATTAAATCAGTTTTCAAAAATTAATTCATTTTCATGAGTTTTTG
* * *
178257 ATTTTTTTCCTTGAAACTCCTTTTTTTTCAAAATACGGTATTTTCTAGTTCATAAATTTTTTTGA
66 ATTTTTTTCCTTGAAACT-CTTTTTTTT-AAAATACGGTATTTTCTACTCCGTAAATTTTTTTGA
**
178322 GGGGATTTTTCTTGGTTTTAAATTTTTAAATTTCATC
129 GGGGATTTTTCTCAGTTTTAAATTTTTAAATTTCATC
* *
178359 AAATATTATCATTTATTTCATATTAAATCAGTTTTCAAAAATTCATTCATTTTCATTTA-TTTTT
1 AAATATTATCATTTATTTCATATTAAATCAGTTTTCAAAAATTAATTCATTTTCA-TGAGTTTTT
* * * * *
178423 -ATTTTTCT-GTTGAAATTCCCTTTTTTTTAAGAA-ACTG-AGTTTTCTCCTCCGTAAATTTTTT
65 GATTTTTTTCCTTGAAA--CTCTTTTTTTTAA-AATACGGTA-TTTTCTACTCCGTAAATTTTTT
* * *
178484 CGAGGGGATTTTTCT-TGGTTTAGAATTTTTAAA
126 TGAGGGGATTTTTCTCAGTTTTA-AATTTTTAAA
178517 ACTCATATAA
Statistics
Matches: 431, Mismatches: 45, Indels: 27
0.86 0.09 0.05
Matches are distributed among these distances:
162 1 0.00
163 120 0.28
164 31 0.07
165 62 0.14
166 33 0.08
167 122 0.28
168 61 0.14
169 1 0.00
ACGTcount: A:0.28, C:0.11, G:0.08, T:0.53
Consensus pattern (165 bp):
AAATATTATCATTTATTTCATATTAAATCAGTTTTCAAAAATTAATTCATTTTCATGAGTTTTTG
ATTTTTTTCCTTGAAACTCTTTTTTTTAAAATACGGTATTTTCTACTCCGTAAATTTTTTTGAGG
GGATTTTTCTCAGTTTTAAATTTTTAAATTTCATC
Found at i:178449 original size:330 final size:333
Alignment explanation
Indices: 177861--178522 Score: 887
Period size: 330 Copynumber: 2.0 Consensus size: 333
177851 AAATTTTTTT
*
177861 AAATATTACCATTTATTTCATATTAAATTAGTTTTTAAAAATTAATTCATTTTCATGAGTTTTTG
1 AAATATTACCATTTATTTCATATTAAATTAGTTTTCAAAAATTAATTCATTTTCATGAGTTTTTG
* * *
177926 ATTTTTTTTCCTTGAAACTTTCTTTTTTCTGAAATATAATATTTTCTACTCCGTAAATTTTTTTG
66 ATTTTTTTTCCTTGAAACTTTCTTTTTTCTAAAATACAATATTTTCTACTCCATAAATTTTTTTG
* *
177991 AGGGGATTTCTCTCAGTTTTCAATTTTTAAATTTCATCAAATATTATCATGTATTTTATATTAAA
131 AGGGGATTTCTCTCAGTTTTAAATTTTTAAATTTCATCAAATATTATCATGTATTTCATATTAAA
*
178056 TCCATTTTTAAAAATCAATTCATTTTCATGAGTTTTTGATTTTTTCCTTGAAACT-CTTTTTTTT
196 TCCATTTTCAAAAATCAATTCATTTTCATGAGTTTTTGATTTTTTCCTTGAAACTCCTTTTTTTT
* * * * * **
178120 AA-ATACGGTA-TTTTTTTCTTCGTAAATTTTTTTAAGGGGATTTTTCTCAGTTTTTAATTTTTA
261 AAGAAACGG-AGTTTTCTCCTCCGTAAATTTTTTCAAGGGGATTTTTCTCAGTTTAGAATTTTTA
*
178183 AATCTCATC
325 AAACTCATC
* *
178192 AAATATTATCATTTATTTCATATTAAATTAGTTTTCAAAAATTAATTCATTTTCATGAGTTTTTT
1 AAATATTACCATTTATTTCATATTAAATTAGTTTTCAAAAATTAATTCATTTTCATGAGTTTTTG
** * *
178257 A-TTTTTTTCCTTGAAACTCCTT-TTTTTTC-AAAATACGGTATTTTCTAGTTCATAAATTTTTT
66 ATTTTTTTTCCTTGAAACT--TTCTTTTTTCTAAAATACAATATTTTCTACTCCATAAATTTTTT
* ** *
178319 TGAGGGGATTTTTCTTGGTTTTAAATTTTTAAATTTCATCAAATATTATCATTTATTTCATATTA
129 TGAGGGGATTTCTCTCAGTTTTAAATTTTTAAATTTCATCAAATATTATCATGTATTTCATATTA
* * *
178384 AAT-CAGTTTTCAAAAATTC-ATTCATTTTCATTTA-TTTTT-A-TTTTTCTGTTGAAATTCCCT
194 AATCCA-TTTTCAAAAA-TCAATTCATTTTCA-TGAGTTTTTGATTTTTTC-CTTGAAACT-CCT
* * **
178444 TTTTTTTAAGAAACTGAGTTTTCTCCTCCGTAAATTTTTTCGAGGGGATTTTTCTTGGTTTAGAA
254 TTTTTTTAAGAAACGGAGTTTTCTCCTCCGTAAATTTTTTCAAGGGGATTTTTCTCAGTTTAGAA
178509 TTTTTAAAACTCAT
319 TTTTTAAAACTCAT
178523 ATAATGTTTT
Statistics
Matches: 289, Mismatches: 32, Indels: 19
0.85 0.09 0.06
Matches are distributed among these distances:
328 6 0.02
329 10 0.03
330 130 0.45
331 86 0.30
332 57 0.20
ACGTcount: A:0.28, C:0.11, G:0.08, T:0.52
Consensus pattern (333 bp):
AAATATTACCATTTATTTCATATTAAATTAGTTTTCAAAAATTAATTCATTTTCATGAGTTTTTG
ATTTTTTTTCCTTGAAACTTTCTTTTTTCTAAAATACAATATTTTCTACTCCATAAATTTTTTTG
AGGGGATTTCTCTCAGTTTTAAATTTTTAAATTTCATCAAATATTATCATGTATTTCATATTAAA
TCCATTTTCAAAAATCAATTCATTTTCATGAGTTTTTGATTTTTTCCTTGAAACTCCTTTTTTTT
AAGAAACGGAGTTTTCTCCTCCGTAAATTTTTTCAAGGGGATTTTTCTCAGTTTAGAATTTTTAA
AACTCATC
Done.