Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold1750
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 172274
ACGTcount: A:0.34, C:0.16, G:0.15, T:0.34
File 1 of 2
Found at i:1815 original size:28 final size:28
Alignment explanation
Indices: 1755--1832 Score: 90
Period size: 28 Copynumber: 2.9 Consensus size: 28
1745 AAATGCCACA
*
1755 TTTTGTATTTGTCAAATATGGTGATTTC
1 TTTTGTATTTGTCAAATATGGTGGTTTC
*
1783 CTTTGTATTTGTCAAATATGGTGGTTAT-
1 TTTTGTATTTGTCAAATATGGTGGTT-TC
* *
1811 TTTTG--TTTGTAAAAAATGGTGG
1 TTTTGTATTTGTCAAATATGGTGG
1833 CTTGTTGTTT
Statistics
Matches: 44, Mismatches: 5, Indels: 4
0.83 0.09 0.08
Matches are distributed among these distances:
26 15 0.34
28 28 0.64
29 1 0.02
ACGTcount: A:0.23, C:0.05, G:0.22, T:0.50
Consensus pattern (28 bp):
TTTTGTATTTGTCAAATATGGTGGTTTC
Found at i:1849 original size:24 final size:24
Alignment explanation
Indices: 1790--1858 Score: 75
Period size: 24 Copynumber: 2.8 Consensus size: 24
1780 TTCCTTTGTA
* * *
1790 TTTGTCAAATATGGTGGTTATTTTTG
1 TTTGTCAAAAATGGTGG--CTTGTTG
*
1816 TTTGTAAAAAATGGTGGCTTGTTG
1 TTTGTCAAAAATGGTGGCTTGTTG
*
1840 TTTGTCAAAATTGGTGGCT
1 TTTGTCAAAAATGGTGGCT
1859 AATTTTTATT
Statistics
Matches: 37, Mismatches: 6, Indels: 2
0.82 0.13 0.04
Matches are distributed among these distances:
24 22 0.59
26 15 0.41
ACGTcount: A:0.22, C:0.06, G:0.26, T:0.46
Consensus pattern (24 bp):
TTTGTCAAAAATGGTGGCTTGTTG
Found at i:12207 original size:13 final size:13
Alignment explanation
Indices: 12189--12214 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
12179 CAATTTTTTG
12189 TGTATCGATACAT
1 TGTATCGATACAT
12202 TGTATCGATACAT
1 TGTATCGATACAT
12215 ACTTGCTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:14255 original size:15 final size:15
Alignment explanation
Indices: 14236--14295 Score: 56
Period size: 15 Copynumber: 4.1 Consensus size: 15
14226 AAAATTAAAA
14236 ATATAAATTTATATTT
1 ATATAAA-TTATATTT
14252 -TATAAATTATATTT
1 ATATAAATTATATTT
*
14266 ATAT--ATTTTA-TT
1 ATATAAATTATATTT
14278 ATATTATAATTATATTT
1 ATA-TA-AATTATATTT
14295 A
1 A
14296 AAATATTTTA
Statistics
Matches: 36, Mismatches: 2, Indels: 11
0.73 0.04 0.22
Matches are distributed among these distances:
12 5 0.14
13 6 0.17
14 8 0.22
15 9 0.25
16 5 0.14
17 3 0.08
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (15 bp):
ATATAAATTATATTT
Found at i:14267 original size:20 final size:20
Alignment explanation
Indices: 14242--14310 Score: 65
Period size: 22 Copynumber: 3.5 Consensus size: 20
14232 AAAAATATAA
14242 ATTTATATTTTATAAATTAT
1 ATTTATATTTTATAAATTAT
*
14262 ATTTATATATTTTATTATATTAT
1 A-TT-TATATTTTA-TAAATTAT
*
14285 AATTATA-TTTA-AAA-TAT
1 ATTTATATTTTATAAATTAT
14302 -TTTATATTT
1 ATTTATATTT
14311 ATCACTTCGT
Statistics
Matches: 41, Mismatches: 4, Indels: 11
0.73 0.07 0.20
Matches are distributed among these distances:
16 5 0.12
17 5 0.12
18 2 0.05
20 5 0.12
21 6 0.15
22 10 0.24
23 8 0.20
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (20 bp):
ATTTATATTTTATAAATTAT
Found at i:14288 original size:29 final size:31
Alignment explanation
Indices: 14243--14306 Score: 89
Period size: 30 Copynumber: 2.2 Consensus size: 31
14233 AAAATATAAA
* *
14243 TTTA-TATTTTATAAATTATATTT-ATATAT
1 TTTATTATATTATAAATTATATTTAAAATAT
14272 TTTATTATATTAT-AATTATATTTAAAATAT
1 TTTATTATATTATAAATTATATTTAAAATAT
14302 TTTAT
1 TTTAT
14307 ATTTATCACT
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
29 14 0.45
30 17 0.55
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (31 bp):
TTTATTATATTATAAATTATATTTAAAATAT
Found at i:14290 original size:23 final size:22
Alignment explanation
Indices: 14241--14292 Score: 70
Period size: 23 Copynumber: 2.4 Consensus size: 22
14231 TAAAAATATA
14241 AATT-TATATTTTATAAATTAT
1 AATTATATATTTTATAAATTAT
* *
14262 ATTTATATATTTTATTATATTAT
1 AATTATATATTTTA-TAAATTAT
14285 AATTATAT
1 AATTATAT
14293 TTAAAATATT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
21 3 0.12
22 9 0.35
23 14 0.54
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (22 bp):
AATTATATATTTTATAAATTAT
Found at i:17911 original size:25 final size:27
Alignment explanation
Indices: 17882--17931 Score: 77
Period size: 27 Copynumber: 1.9 Consensus size: 27
17872 TTTTAAATTA
17882 TTATTTAA-TAATT-TAAAACATATTT
1 TTATTTAATTAATTATAAAACATATTT
*
17907 TTATTTAATTAATTATAAAATATAT
1 TTATTTAATTAATTATAAAACATAT
17932 AAATATTAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 8 0.36
26 5 0.23
27 9 0.41
ACGTcount: A:0.46, C:0.02, G:0.00, T:0.52
Consensus pattern (27 bp):
TTATTTAATTAATTATAAAACATATTT
Found at i:17938 original size:27 final size:25
Alignment explanation
Indices: 17883--17942 Score: 59
Period size: 27 Copynumber: 2.4 Consensus size: 25
17873 TTTAAATTAT
***
17883 TATTTAATAATTTAAAACATATTTT
1 TATTTAATAATTTAAAACATATAAA
*
17908 TATTTAATTAATTATAAAATATATAAA
1 TATTTAA-TAATT-TAAAACATATAAA
17935 TA-TTAATA
1 TATTTAATA
17943 TAAAAATAAT
Statistics
Matches: 29, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
25 9 0.31
26 9 0.31
27 11 0.38
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (25 bp):
TATTTAATAATTTAAAACATATAAA
Found at i:17946 original size:21 final size:20
Alignment explanation
Indices: 17913--17973 Score: 79
Period size: 21 Copynumber: 2.9 Consensus size: 20
17903 ATTTTTATTT
17913 AATTAAT-TATAAAATATATAA
1 AATTAATATA-AAAATA-ATAA
17934 ATATTAATATAAAAATAATAA
1 A-ATTAATATAAAAATAATAA
17955 AATTTAATATAAAAATAAT
1 AA-TTAATATAAAAATAAT
17974 TTTTTATTAA
Statistics
Matches: 37, Mismatches: 0, Indels: 6
0.86 0.00 0.14
Matches are distributed among these distances:
20 1 0.03
21 22 0.59
22 12 0.32
23 2 0.05
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (20 bp):
AATTAATATAAAAATAATAA
Found at i:18326 original size:24 final size:24
Alignment explanation
Indices: 18299--18354 Score: 87
Period size: 24 Copynumber: 2.3 Consensus size: 24
18289 TAATAAATGA
*
18299 TTTAATTTAAATTAAATTAT-ATAT
1 TTTAATTT-AATAAAATTATCATAT
18323 TTTAATTTAATAAAATTATCATAT
1 TTTAATTTAATAAAATTATCATAT
18347 TTTAATTT
1 TTTAATTT
18355 TTATTGATTG
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
23 10 0.33
24 20 0.67
ACGTcount: A:0.43, C:0.02, G:0.00, T:0.55
Consensus pattern (24 bp):
TTTAATTTAATAAAATTATCATAT
Found at i:18329 original size:18 final size:19
Alignment explanation
Indices: 18283--18329 Score: 53
Period size: 18 Copynumber: 2.6 Consensus size: 19
18273 TAACTATACT
*
18283 TAATTTTAA-TAAATGATT
1 TAATTTTAATTAAATGATA
* *
18301 TAATTTAAATTAAATTATA
1 TAATTTTAATTAAATGATA
18320 T-ATTTTAATT
1 TAATTTTAATT
18330 TAATAAAATT
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
18 16 0.67
19 8 0.33
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.53
Consensus pattern (19 bp):
TAATTTTAATTAAATGATA
Found at i:18648 original size:2 final size:2
Alignment explanation
Indices: 18641--18685 Score: 90
Period size: 2 Copynumber: 22.5 Consensus size: 2
18631 TTTACATGAT
18641 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
18683 TC T
1 TC T
18686 GTGCTGGAGA
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 43 1.00
ACGTcount: A:0.00, C:0.49, G:0.00, T:0.51
Consensus pattern (2 bp):
TC
Found at i:19505 original size:75 final size:75
Alignment explanation
Indices: 19377--19543 Score: 298
Period size: 75 Copynumber: 2.2 Consensus size: 75
19367 TGTCTCTTTG
* * * *
19377 TTGTCTTTTCTTTTTAGAATTCAGCTTTATTGGTCTTGTAGAACCTGTAGTTGCATCCCAAATAT
1 TTGTGTTTTCATTCTAGAATTCAGCTTTATTGGTCCTGTAGAACCTGTAGTTGCATCCCAAATAT
19442 TACAACTTGT
66 TACAACTTGT
19452 TTGTGTTTTCATTCTAGAATTCAGCTTTATTGGTCCTGTAGAACCTGTAGTTGCATCCCAAATAT
1 TTGTGTTTTCATTCTAGAATTCAGCTTTATTGGTCCTGTAGAACCTGTAGTTGCATCCCAAATAT
19517 TACAACTTGT
66 TACAACTTGT
19527 TTGTGTTTTCATTCTAG
1 TTGTGTTTTCATTCTAG
19544 GATTGTATCA
Statistics
Matches: 88, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
75 88 1.00
ACGTcount: A:0.22, C:0.17, G:0.16, T:0.45
Consensus pattern (75 bp):
TTGTGTTTTCATTCTAGAATTCAGCTTTATTGGTCCTGTAGAACCTGTAGTTGCATCCCAAATAT
TACAACTTGT
Found at i:22676 original size:18 final size:18
Alignment explanation
Indices: 22644--22682 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
22634 TAATCATGTT
*
22644 TAAAATATTATATATTTA
1 TAAAATATTATATATTAA
22662 TAAAA-ATTATGATATTAA
1 TAAAATATTAT-ATATTAA
22680 TAA
1 TAA
22683 TTTATGTTAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 5 0.26
18 14 0.74
ACGTcount: A:0.54, C:0.00, G:0.03, T:0.44
Consensus pattern (18 bp):
TAAAATATTATATATTAA
Found at i:23669 original size:7 final size:8
Alignment explanation
Indices: 23652--23678 Score: 54
Period size: 8 Copynumber: 3.4 Consensus size: 8
23642 AATATAAATA
23652 TTTTTATT
1 TTTTTATT
23660 TTTTTATT
1 TTTTTATT
23668 TTTTTATT
1 TTTTTATT
23676 TTT
1 TTT
23679 ATAATTATAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 19 1.00
ACGTcount: A:0.11, C:0.00, G:0.00, T:0.89
Consensus pattern (8 bp):
TTTTTATT
Found at i:25391 original size:13 final size:13
Alignment explanation
Indices: 25373--25397 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
25363 TATGGAGTGC
25373 TTTAGTGACCATG
1 TTTAGTGACCATG
25386 TTTAGTGACCAT
1 TTTAGTGACCAT
25398 ATTATATAAC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.16, G:0.20, T:0.40
Consensus pattern (13 bp):
TTTAGTGACCATG
Found at i:27515 original size:15 final size:16
Alignment explanation
Indices: 27476--27519 Score: 63
Period size: 17 Copynumber: 2.8 Consensus size: 16
27466 AATTTGAATT
27476 TAATTTTTAAATATAA
1 TAATTTTTAAATATAA
*
27492 AATATTTTTAAATAT-A
1 TA-ATTTTTAAATATAA
27508 TAATTTTTAAAT
1 TAATTTTTAAAT
27520 GATCAACCAA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
15 10 0.40
16 3 0.12
17 12 0.48
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (16 bp):
TAATTTTTAAATATAA
Found at i:27809 original size:6 final size:6
Alignment explanation
Indices: 27800--27824 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
27790 TTATAATTTT
27800 AATATA AATATA AATATA AATATA A
1 AATATA AATATA AATATA AATATA A
27825 TTTAATAATT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (6 bp):
AATATA
Found at i:27886 original size:21 final size:21
Alignment explanation
Indices: 27807--27888 Score: 55
Period size: 21 Copynumber: 4.0 Consensus size: 21
27797 TTTAATATAA
*
27807 ATATAAATATAAATATAATTT
1 ATATTAATATAAATATAATTT
*
27828 A-A-TAAT-T-AATCATTATTT
1 ATATTAATATAAAT-ATAATTT
* *** *
27846 AACATTAATATGTTTTTAATTT
1 -ATATTAATATAAATATAATTT
27868 ATATTAATATAAATATAATTT
1 ATATTAATATAAATATAATTT
27889 TTAATTATTT
Statistics
Matches: 44, Mismatches: 11, Indels: 12
0.66 0.16 0.18
Matches are distributed among these distances:
17 3 0.07
18 7 0.16
19 4 0.09
20 2 0.05
21 21 0.48
22 6 0.14
23 1 0.02
ACGTcount: A:0.48, C:0.02, G:0.01, T:0.49
Consensus pattern (21 bp):
ATATTAATATAAATATAATTT
Found at i:27931 original size:14 final size:14
Alignment explanation
Indices: 27905--27954 Score: 57
Period size: 14 Copynumber: 3.5 Consensus size: 14
27895 ATTTATCATT
27905 ATATACATA-TTTTA
1 ATATA-ATATTTTTA
27919 ATATAATATTTTTA
1 ATATAATATTTTTA
* *
27933 ATAATTATTTTTTTA
1 AT-ATAATATTTTTA
27948 ATATAAT
1 ATATAAT
27955 TTATCTTAAA
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
13 3 0.10
14 16 0.52
15 12 0.39
ACGTcount: A:0.42, C:0.02, G:0.00, T:0.56
Consensus pattern (14 bp):
ATATAATATTTTTA
Found at i:27956 original size:14 final size:14
Alignment explanation
Indices: 27914--27956 Score: 59
Period size: 14 Copynumber: 3.0 Consensus size: 14
27904 TATATACATA
*
27914 TTTTAATATAATAT
1 TTTTAATATAATTT
*
27928 TTTTAATAATTATTT
1 TTTTAAT-ATAATTT
27943 TTTTAATATAATTT
1 TTTTAATATAATTT
27957 ATCTTAAAAG
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
14 13 0.52
15 12 0.48
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (14 bp):
TTTTAATATAATTT
Found at i:27963 original size:15 final size:13
Alignment explanation
Indices: 27914--27956 Score: 50
Period size: 15 Copynumber: 3.1 Consensus size: 13
27904 TATATACATA
27914 TTTTAATATAATAT
1 TTTTAATATAAT-T
*
27928 TTTTAATAATTATTT
1 TTTTAAT-A-TAATT
27943 TTTTAATATAATT
1 TTTTAATATAATT
27956 T
1 T
27957 ATCTTAAAAG
Statistics
Matches: 25, Mismatches: 2, Indels: 5
0.78 0.06 0.16
Matches are distributed among these distances:
13 5 0.20
14 8 0.32
15 9 0.36
16 3 0.12
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (13 bp):
TTTTAATATAATT
Found at i:30231 original size:285 final size:282
Alignment explanation
Indices: 29721--30290 Score: 996
Period size: 285 Copynumber: 2.0 Consensus size: 282
29711 AAAGAAAAAA
* *
29721 ATTAAAACATACAATTAATAAATTGTTATTCTAAAATGAAAACCTACGTAAATATTATAATAAAA
1 ATTAAAACATACAATTAATAAATTGTTATTCTAAAATGAAAACCTACATAAATATTACAATAAAA
* **
29786 ATTTTAAATATAAATTGTATTTGATCGTAAAAAAATGAAATATTACAGTAAGAATTTAGCAATAA
66 ATTTTAAATATAAACTGTATTTGATCGTAAAAAAACAAAATATTACAGTAAGAATTTAGCAATAA
* *
29851 TTTTTATTGAAAATTAATTAAAATAATTATATATCTTTAATTATTGAAATTATTATCGATTATTG
131 TTTTTATTGAAAATTAATTAAAATAATTATATATCTTTAATTATTGAAATTATTATCGATTACTA
29916 TTTATTATTTGAACTTGATTTATGTTTAAATTTGAATTTAAATGGCTCCAAAATAGTTTAATAAA
196 TTTATTATTTGAACTTGATTTATGTTTAAATTTGAATTTAAATGGCTCCAAAATAGTTTAATAAA
29981 ATTAATTATGGTATAAAGATAT
261 ATTAATTATGGTATAAAGATAT
*
30003 ATTAAAACATACAATTAATAAATTGTTATTCTAAAATGAAAACCTACATAAATATTACAATAAAG
1 ATTAAAACATACAATTAATAAATTGTTATTCTAAAATGAAAACCTACATAAATATTACAATAAAA
* * *
30068 ATTTTAAATATAAACTGTATTTGATTGTAAAAAGAAACAAAATATTACAGTAAGGATTTCGCAAT
66 ATTTTAAATATAAACTGTATTTGATCGT-AAAA-AAACAAAATATTACAGTAAGAATTTAGCAAT
30133 AATTTTTTATTGAAAATTAATTAAAATAATTATATATCTTTAATTATTGAAATTATTATCGATTA
129 AA-TTTTTATTGAAAATTAATTAAAATAATTATATATCTTTAATTATTGAAATTATTATCGATTA
*
30198 CTATTTATTATTTGAACTTGATTTATTTTTAAATTTGAATTTAAATGGCTCCAAAATAGTTTAAT
193 CTATTTATTATTTGAACTTGATTTATGTTTAAATTTGAATTTAAATGGCTCCAAAATAGTTTAAT
*
30263 AAAATTAATTATGGTATAAAGCTAT
258 AAAATTAATTATGGTATAAAGATAT
30288 ATT
1 ATT
30291 CTTTACTATT
Statistics
Matches: 272, Mismatches: 13, Indels: 3
0.94 0.05 0.01
Matches are distributed among these distances:
282 88 0.32
283 4 0.01
284 29 0.11
285 151 0.56
ACGTcount: A:0.45, C:0.06, G:0.08, T:0.41
Consensus pattern (282 bp):
ATTAAAACATACAATTAATAAATTGTTATTCTAAAATGAAAACCTACATAAATATTACAATAAAA
ATTTTAAATATAAACTGTATTTGATCGTAAAAAAACAAAATATTACAGTAAGAATTTAGCAATAA
TTTTTATTGAAAATTAATTAAAATAATTATATATCTTTAATTATTGAAATTATTATCGATTACTA
TTTATTATTTGAACTTGATTTATGTTTAAATTTGAATTTAAATGGCTCCAAAATAGTTTAATAAA
ATTAATTATGGTATAAAGATAT
Found at i:30642 original size:24 final size:24
Alignment explanation
Indices: 30594--30642 Score: 64
Period size: 24 Copynumber: 2.0 Consensus size: 24
30584 AAGTTTTGAC
*
30594 TTTTATATATTTATTATATATAAT
1 TTTTATATATTTATTATATAAAAT
*
30618 TTTTATATTTTTAATTAT-TAAAAT
1 TTTTATATATTT-ATTATATAAAAT
30642 T
1 T
30643 ATTGTCAATT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
24 17 0.77
25 5 0.23
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (24 bp):
TTTTATATATTTATTATATAAAAT
Found at i:31065 original size:455 final size:455
Alignment explanation
Indices: 30165--31144 Score: 1151
Period size: 454 Copynumber: 2.2 Consensus size: 455
30155 AAAATAATTA
* * * *
30165 TATATCTTTAATTATTGAAATTATTATCGATTACTA-TTTATTATTTGAACTTGATTTATTTTT-
1 TATATTTTTAATTATTAAAATTATTGTCGATTACTAGTTTACTATTTGAACTTGATTTATTTTTA
* * * * * *
30228 AAATTTGAATTTAAATGGCTCCAAAATAGTTTAATAAAATTAATTATGGTATAAAGCTATATTCT
66 AAATTTAAATTTAAATGACTCCAAAATAGATTAATAAAATTAAATATGGTATAAAACTATATTAT
* * * *
30293 TTACTATTTGTAAAAAAAACTCTTATTTATAGTAGTCTAGTAAATAAATTTAATTTAATATTTTT
131 TTACTATTTGTAAAAAAAACCCCTATTTATAGTACTCTAGTAAATAAATTTAATTTAAAATTTTT
*
30358 TGTTAGATATAAAAAAATTAAAATTTTATTTGTTTACATATATATATATATATAAGGTAAATCAA
196 TGTAAGATATAAAAAAATTAAAATTTTA--T-TTTACATATATATATATATATAAGGTAAATCAA
* * *
30423 TTAAAAGTATATAATAATAAATATAATAATTATATTAAATATTTTAATATTAAATTAAATCAAAT
258 TTAAAAGTATAAAAAAATAAATATAATAATTATATAAAATATTTTAATATTAAATTAAATCAAAT
* * *
30488 TAAAATAATTAAATATTCGACATACAATGACTTTTTGTGATCGCTTATATGTGAATAATATAAAC
323 TAAAATAATTAAATATACGACATACAATGACTTTTTATGATCGCTTATATGTAAATAATATAAAC
*
30553 TATACATATTAAATAATTACTTTTTTGTAAAAAGTTTTGACTTTTATATATTTATTATATATAA-
388 TATACATATTAAATAATTACTTTTTTGTAAAAAGTTTTAACTTTTATATATTTATTATATA-AAT
30617 TTTT
452 TTTT
* *
30621 TATATTTTTAATTATTAAAATTATTGTCAATTACTAGTTTACTATTTAAACTTGATTTATTTTTA
1 TATATTTTTAATTATTAAAATTATTGTCGATTACTAGTTTACTATTTGAACTTGATTTATTTTTA
* * *
30686 AAATTTAAATTTAAATTACTCCAAATTA-ATTATTAAAATTAAATA-GAGTATAAAACTATATTA
66 AAATTTAAATTTAAATGACTCCAAAATAGATTAATAAAATTAAATATG-GTATAAAACTATATTA
* *
30749 TTTA-TCA-TT-TATAGAAAACCCCTATTTATAGTAACT-TAGTAAATAAATTTAATTTAAAATT
130 TTTACT-ATTTGTAAAAAAAACCCCTATTTATAGT-ACTCTAGTAAATAAATTTAATTTAAAATT
* * *
30810 TTTT-TAAGATATGAAAAGAAATTGGAAATTTTA-TTT-C-TTTATATATATATATAAGGTAAGT
193 TTTTGTAAGATAT-AAAA-AAATT-AAAATTTTATTTTACATATATATATATATATAAGGTAAAT
*
30871 CAA-TAAATAGTATAAAAAGAAATAAATATAATTAGTTATATAAAATATTTTAATATTAAATTAA
255 CAATTAAA-AGTAT-AAAA-AAATAAATATAA-TAATTATATAAAATATTTTAATATTAAATTAA
* * *
30935 ATC-AATTGAAAATATTTAAGTATAC-A-ATAC-ATGACAACTTTTTATTA-CTG-TTCACT-TG
316 ATCAAATT-AAAATAATTAAATATACGACATACAATG---ACTTTTTATGATC-GCTT-A-TATG
** ** * * *
30993 TAAATAATATAGGCTATTTATATTAGATAATTATCTTTTATT-TAAAAGGTTTTAACTTTTGTAT
374 TAAATAATATAAACTATACATATTAAATAATTA-CTTTT-TTGTAAAAAGTTTTAACTTTTATAT
31057 ATTTATTATATAAATTTTT
437 ATTTATTATATAAATTTTT
* * ** * *
31076 TATATTTTTATTTATTAAAATTATTGTTGGCTACT-GTTTACTATTTGAATTTGATTTGTTTTTA
1 TATATTTTTAATTATTAAAATTATTGTCGATTACTAGTTTACTATTTGAACTTGATTTATTTTTA
31140 AAATT
66 AAATT
31145 GAATTTCAAT
Statistics
Matches: 451, Mismatches: 51, Indels: 46
0.82 0.09 0.08
Matches are distributed among these distances:
450 4 0.01
451 33 0.07
452 8 0.02
453 22 0.05
454 127 0.28
455 122 0.27
456 45 0.10
457 66 0.15
458 24 0.05
ACGTcount: A:0.41, C:0.06, G:0.07, T:0.46
Consensus pattern (455 bp):
TATATTTTTAATTATTAAAATTATTGTCGATTACTAGTTTACTATTTGAACTTGATTTATTTTTA
AAATTTAAATTTAAATGACTCCAAAATAGATTAATAAAATTAAATATGGTATAAAACTATATTAT
TTACTATTTGTAAAAAAAACCCCTATTTATAGTACTCTAGTAAATAAATTTAATTTAAAATTTTT
TGTAAGATATAAAAAAATTAAAATTTTATTTTACATATATATATATATATAAGGTAAATCAATTA
AAAGTATAAAAAAATAAATATAATAATTATATAAAATATTTTAATATTAAATTAAATCAAATTAA
AATAATTAAATATACGACATACAATGACTTTTTATGATCGCTTATATGTAAATAATATAAACTAT
ACATATTAAATAATTACTTTTTTGTAAAAAGTTTTAACTTTTATATATTTATTATATAAATTTTT
Found at i:32841 original size:6 final size:6
Alignment explanation
Indices: 32807--32840 Score: 52
Period size: 6 Copynumber: 5.8 Consensus size: 6
32797 CCCTAAATTT
*
32807 CTTTTC CTTTTC CTTTTC CTTTT- CTTTTT CTTTT
1 CTTTTC CTTTTC CTTTTC CTTTTC CTTTTC CTTTT
32841 TTAAATATAA
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
5 5 0.19
6 22 0.81
ACGTcount: A:0.00, C:0.26, G:0.00, T:0.74
Consensus pattern (6 bp):
CTTTTC
Found at i:32841 original size:12 final size:11
Alignment explanation
Indices: 32804--32840 Score: 56
Period size: 11 Copynumber: 3.3 Consensus size: 11
32794 TTACCCTAAA
32804 TTTCTTTTCCT
1 TTTCTTTTCCT
32815 TTTCCTTTTCCT
1 TTT-CTTTTCCT
*
32827 TTTCTTTTTCT
1 TTTCTTTTCCT
32838 TTT
1 TTT
32841 TTAAATATAA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
11 13 0.54
12 11 0.46
ACGTcount: A:0.00, C:0.24, G:0.00, T:0.76
Consensus pattern (11 bp):
TTTCTTTTCCT
Found at i:32841 original size:18 final size:18
Alignment explanation
Indices: 32807--32840 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
32797 CCCTAAATTT
32807 CTTTTCCTTTTCCTTTTC
1 CTTTTCCTTTTCCTTTTC
*
32825 CTTTT-CTTTTTCTTTT
1 CTTTTCCTTTTCCTTTT
32841 TTAAATATAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 10 0.67
18 5 0.33
ACGTcount: A:0.00, C:0.26, G:0.00, T:0.74
Consensus pattern (18 bp):
CTTTTCCTTTTCCTTTTC
Found at i:33237 original size:23 final size:22
Alignment explanation
Indices: 33185--33272 Score: 74
Period size: 23 Copynumber: 3.8 Consensus size: 22
33175 TGTTATATAA
*
33185 ATTTTAATATATTTATATATATTAT
1 ATTTTAAT-TTTTTAT-TA-ATTAT
*
33210 ATTTAAATTTTTTATTAGATTA-
1 ATTTTAATTTTTTATTA-ATTAT
33232 ATTTTATATTTTATT-TTAATTAT
1 ATTTTA-ATTTT-TTATTAATTAT
33255 ATTTT-ATTTTTTAATTAA
1 ATTTTAATTTTTT-ATTAA
33273 AATTGTTAAA
Statistics
Matches: 54, Mismatches: 4, Indels: 13
0.76 0.06 0.18
Matches are distributed among these distances:
20 2 0.04
21 5 0.09
22 13 0.24
23 19 0.35
24 8 0.15
25 7 0.13
ACGTcount: A:0.35, C:0.00, G:0.01, T:0.64
Consensus pattern (22 bp):
ATTTTAATTTTTTATTAATTAT
Found at i:34151 original size:17 final size:18
Alignment explanation
Indices: 34125--34160 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 18
34115 ATAATTATAA
34125 TATCTAAATTTA-AATAT
1 TATCTAAATTTATAATAT
*
34142 TATCTGAATTTATAATAT
1 TATCTAAATTTATAATAT
34160 T
1 T
34161 CGAATTGGTA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 11 0.65
18 6 0.35
ACGTcount: A:0.42, C:0.06, G:0.03, T:0.50
Consensus pattern (18 bp):
TATCTAAATTTATAATAT
Found at i:38633 original size:15 final size:16
Alignment explanation
Indices: 38615--38645 Score: 55
Period size: 15 Copynumber: 2.0 Consensus size: 16
38605 TCAAAATTAC
38615 TATAATTAA-AAATTT
1 TATAATTAACAAATTT
38630 TATAATTAACAAATTT
1 TATAATTAACAAATTT
38646 ATTATATTTA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 9 0.60
16 6 0.40
ACGTcount: A:0.52, C:0.03, G:0.00, T:0.45
Consensus pattern (16 bp):
TATAATTAACAAATTT
Found at i:39673 original size:2 final size:2
Alignment explanation
Indices: 39666--39690 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
39656 ATTTGTTTAC
39666 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
39691 GGTAAGTCAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:40121 original size:2 final size:2
Alignment explanation
Indices: 40116--40140 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
40106 TTACACACAC
40116 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
40141 GATAAAGGTA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:41322 original size:2 final size:2
Alignment explanation
Indices: 41315--41341 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
41305 ACAATATACT
41315 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
41342 TTTATGAACA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:41825 original size:26 final size:25
Alignment explanation
Indices: 41749--41828 Score: 74
Period size: 26 Copynumber: 3.1 Consensus size: 25
41739 AAAATTTGTT
* *
41749 AATA-ATATATATATTATGCAACTTTA
1 AATATATATATATATTA-GTAA-ATTA
*
41775 AATATATATA-ATATTTATTATAATTA
1 AATATATATATATA-TTAGTA-AATTA
41801 AATATATATATATATTACGTAAATTA
1 AATATATATATATATTA-GTAAATTA
41827 AA
1 AA
41829 AATTAATAAA
Statistics
Matches: 45, Mismatches: 4, Indels: 10
0.76 0.07 0.17
Matches are distributed among these distances:
26 31 0.69
27 14 0.31
ACGTcount: A:0.50, C:0.04, G:0.03, T:0.44
Consensus pattern (25 bp):
AATATATATATATATTAGTAAATTA
Found at i:41907 original size:2 final size:2
Alignment explanation
Indices: 41900--41929 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
41890 CGTATCTGTA
41900 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
41930 TGGATCGTCT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:42518 original size:24 final size:23
Alignment explanation
Indices: 42472--42563 Score: 71
Period size: 24 Copynumber: 3.7 Consensus size: 23
42462 ATTTTTATGA
42472 TATTTATTTTATATTTTAT-TTAAT
1 TATTT-TTTTAT-TTTTATATTAAT
42496 TATTTTTTTATTTTTATAATTAAAT
1 TATTTTTTTATTTTTAT-ATT-AAT
* *
42521 T-TTTTTATAATTTTTTTATTTTAAT
1 TATTTTT-T--TATTTTTATATTAAT
*
42546 AATTTTTTATATTTTTAT
1 TATTTTTT-TATTTTTAT
42564 TATATTTATT
Statistics
Matches: 57, Mismatches: 4, Indels: 14
0.76 0.05 0.19
Matches are distributed among these distances:
22 6 0.11
23 6 0.11
24 21 0.37
25 9 0.16
26 7 0.12
27 8 0.14
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (23 bp):
TATTTTTTTATTTTTATATTAAT
Found at i:42534 original size:11 final size:11
Alignment explanation
Indices: 42452--42581 Score: 56
Period size: 11 Copynumber: 10.9 Consensus size: 11
42442 TTTATATATA
*
42452 TTTTATTAATAT
1 TTTTA-TAATTT
42464 TTTTATGATATTT
1 TTTTAT-A-ATTT
42477 ATTTTAT-ATTT
1 -TTTTATAATTT
*
42488 TATTTAATTATTT
1 T-TTT-ATAATTT
42501 TTTTAT--TTT
1 TTTTATAATTT
42510 TATAATTA-AATTT
1 T-T--TTATAATTT
42523 TTTTATAATTT
1 TTTTATAATTT
42534 TTTTATTTTAATAATT
1 TTTTA---TAAT--TT
42550 TTTTAT-ATTT
1 TTTTATAATTT
42560 TTATTAT-ATTT
1 TT-TTATAATTT
42571 ATTTTATAATT
1 -TTTTATAATT
42582 AAAATTATTA
Statistics
Matches: 97, Mismatches: 1, Indels: 40
0.70 0.01 0.29
Matches are distributed among these distances:
9 4 0.04
10 9 0.09
11 32 0.33
12 22 0.23
13 13 0.13
14 10 0.10
16 7 0.07
ACGTcount: A:0.29, C:0.00, G:0.01, T:0.70
Consensus pattern (11 bp):
TTTTATAATTT
Found at i:43906 original size:14 final size:13
Alignment explanation
Indices: 43879--43903 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
43869 TTAATATTTG
43879 TTAAATAATTTTA
1 TTAAATAATTTTA
43892 TTAAATAATTTT
1 TTAAATAATTTT
43904 TATAATTTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (13 bp):
TTAAATAATTTTA
Found at i:44241 original size:73 final size:73
Alignment explanation
Indices: 43938--44977 Score: 976
Period size: 73 Copynumber: 14.5 Consensus size: 73
43928 GTTAAAGTAG
* * *
43938 TTTTAAATA-GATTATACGAATTTAAATTTTT-AAGATATAA-TT-TTTTTATTTGTA-AAGTTT
1 TTTTGAATATGATTATATGAGTTTAAATTTTTAAAG-TATAATTTATTTTTATTTGTAGAAGTTT
43998 AAATTTATCT
65 AAATTTAT-T
* * * * *
44008 TTTT-AGTATAATTATATGAATTTAAATTTTTGAAAGTATAAATTATTTTTATTTGTATAAGTTT
1 TTTTGAATATGATTATATGAGTTTAAATTTTT-AAAGTATAATTTATTTTTATTTGTAGAAGTTT
44072 -AA--T-TT
65 AAATTTATT
** * * *
44077 TTTT-ACCATGATTATATAAATTTAAATTTTTGAAAATATAATTTA-TTTTATTTGTAGAAGTTT
1 TTTTGAATATGATTATATGAGTTTAAATTTTT-AAAGTATAATTTATTTTTATTTGTAGAAGTTT
44140 AAATTTA-T
65 AAATTTATT
* * * * * *
44148 TTTT--ATTTGATTATACGAGTTTAAAATTTTAAAGTATTATTTATCTTTATTTGTAAAAGTTTA
1 TTTTGAATATGATTATATGAGTTTAAATTTTTAAAGTATAATTTATTTTTATTTGTAGAAGTTTA
44211 AATTTATT
66 AATTTATT
** *
44219 TTTTGAATATGATTATATGAGTTTAAATTTTTATGGTATAATTTATTTTAATTTGTAGAAGTTTA
1 TTTTGAATATGATTATATGAGTTTAAATTTTTAAAGTATAATTTATTTTTATTTGTAGAAGTTTA
*
44284 AACTTATT
66 AATTTATT
** * * * *
44292 TTTTGGGTATGATTATATGGGTTTAAATTTTTGAAGATATAGTTTA-TTTTATTTATAGAAGTTT
1 TTTTGAATATGATTATATGAGTTTAAATTTTTAAAG-TATAATTTATTTTTATTTGTAGAAGTTT
* *
44356 AATTTTGTT
65 AAATTTATT
* ** * * * *
44365 TTTTG-ATTTGATTATACAAGTTAAAAATTTTAAAATATAATTTATTTTTATTTGTAGAAGTTCA
1 TTTTGAATATGATTATATGAGTTTAAATTTTTAAAGTATAATTTATTTTTATTTGTAGAAGTTTA
44429 AATTTATT
66 AATTTATT
** * *
44437 TTTTGGAA-ATGATTATACAAGTTTAAATTTTTGAAGGTATAATTTATTTTTATTTGTAAAAG-T
1 TTTT-GAATATGATTATATGAGTTTAAATTTTT-AAAGTATAATTTATTTTTATTTGTAGAAGTT
*
44500 TAACTATTT-GT
64 TAA--ATTTATT
** ** ** *
44511 TTTTGGGTATGATTATGCGAGCCTAAACTTTTGAATA-TATAATTTATTTTTATTTGTAGAAGTT
1 TTTTGAATATGATTATATGAGTTTAAA-TTTTTAA-AGTATAATTTATTTTTATTTGTAGAAGTT
44575 TAAATTTA-T
64 TAAATTTATT
* *
44584 TTTT--ATTTGATTATATAAGTTTAAATTTTTAAAGTATAATTTATTTTTATTTGTAGAAGTTTA
1 TTTTGAATATGATTATATGAGTTTAAATTTTTAAAGTATAATTTATTTTTATTTGTAGAAGTTTA
**
44647 AATTTGCT
66 AATTTATT
* * * * * *
44655 TTTTG-GTATAATTATATG-GTTTAAAATTTTGAAGGTATAATTTATCTTTATTTGTAAAAGTTT
1 TTTTGAATATGATTATATGAGTTT-AAATTTTTAAAGTATAATTTATTTTTATTTGTAGAAGTTT
*
44718 AAA-TT-TG
65 AAATTTATT
* * * *
44725 TTTAGAGTATGATTATATGAGTTTAAATTTTTTAATA-TATAATTTATTTTTACTTGTAAAAGTT
1 TTTTGAATATGATTATATGAGTTTAAA-TTTTTAA-AGTATAATTTATTTTTATTTGTAGAAGTT
44789 TAAATTTATT
64 TAAATTTATT
* * * * * *
44799 TTTTG-GT-TTATTTATAAGAGTTTAAATTTTTAAGGTATTATTTATCTTTATTTGTAGAAGTTT
1 TTTTGAATATGA-TTATATGAGTTTAAATTTTTAAAGTATAATTTATTTTTATTTGTAGAAGTTT
44862 AAAATTTATT
65 -AAATTTATT
* * * * * *
44872 TTTTGAGTATGATTATACGAGTTTAAATTTTTAAAGTATAATTTATTTATATTTATAAAATTTTA
1 TTTTGAATATGATTATATGAGTTTAAATTTTTAAAGTATAATTTATTTTTATTTGTAGAAGTTTA
44937 AATTTATT
66 AATTTATT
* * *
44945 TCTT-AAGCATAATTATA-GAGTTTAAATTTTTAA
1 TTTTGAA-TATGATTATATGAGTTTAAATTTTTAA
44978 GATAGGATTT
Statistics
Matches: 807, Mismatches: 121, Indels: 82
0.80 0.12 0.08
Matches are distributed among these distances:
68 17 0.02
69 57 0.07
70 111 0.14
71 65 0.08
72 190 0.24
73 215 0.27
74 138 0.17
75 14 0.02
ACGTcount: A:0.34, C:0.02, G:0.11, T:0.53
Consensus pattern (73 bp):
TTTTGAATATGATTATATGAGTTTAAATTTTTAAAGTATAATTTATTTTTATTTGTAGAAGTTTA
AATTTATT
Found at i:44451 original size:218 final size:214
Alignment explanation
Indices: 43947--44981 Score: 1145
Period size: 218 Copynumber: 4.8 Consensus size: 214
43937 GTTTTAAATA
43947 GATTATACGAA-TTTAAATTTTT-AAGATATAA-TT-TTTTTATTTGTA-AAGTTTAAATTTATC
1 GATTATAC-AAGTTTAAATTTTTAAAG-TATAATTTATTTTTATTTGTAGAAGTTTAAATTTAT-
* * * * * *
44007 TTTTT-AGTATAATTATATGAATTTAAATTTTTGAAAGTATAAATTATTTTTATTTGTATAAGTT
63 TTTTTGA-TATGATTATATGAGTTTAAATTTTT-AAGGTATAATTTATTTTAATTTGTAAAAGTT
** * * *
44071 T-AA-TTTTTTT-ACCATGATTATATAAATTTAAATTTTTGAAAATATAATTTA-TTTTATTTGT
126 TAAATTTTTTTTGAGTATGATTATATGAGTTTAAATTTTTGAAGATATAATTTATTTTTATTTGT
44132 AGAAGTTTAAATTTATTTTTATTT
191 AGAAGTTTAAATTTATTTTTATTT
* * * * *
44156 GATTATACGAGTTTAAAATTTTAAAGTATTATTTATCTTTATTTGTAAAAGTTTAAATTTATTTT
1 GATTATACAAGTTTAAATTTTTAAAGTATAATTTATTTTTATTTGTAGAAGTTTAAATTTATTTT
* *
44221 TTGAATATGATTATATGAGTTTAAATTTTTATGGTATAATTTATTTTAATTTGTAGAAGTTTAAA
66 TTG-ATATGATTATATGAGTTTAAATTTTTAAGGTATAATTTATTTTAATTTGTAAAAGTTTAAA
* * * *
44286 CTTATTTTTTGGGTATGATTATATGGGTTTAAATTTTTGAAGATATAGTTTA-TTTTATTTATAG
130 -TT-TTTTTTGAGTATGATTATATGAGTTTAAATTTTTGAAGATATAATTTATTTTTATTTGTAG
* *
44350 AAGTTTAATTTTGTTTTTTGATTT
193 AAGTTTAAATTT-ATTTTT-ATTT
* * * *
44374 GATTATACAAGTTAAAAATTTTAAAATATAATTTATTTTTATTTGTAGAAGTTCAAATTTATTTT
1 GATTATACAAGTTTAAATTTTTAAAGTATAATTTATTTTTATTTGTAGAAGTTTAAATTTATTTT
* ** *
44439 TTGGAAATGATTATACAAGTTTAAATTTTTGAAGGTATAATTTATTTTTATTTGTAAAAG-TTAA
66 TT-GATATGATTATATGAGTTTAAATTTTT-AAGGTATAATTTATTTTAATTTGTAAAAGTTTAA
* ** ** * *
44503 CTATTTGTTTTTGGGTATGATTATGCGAGCCTAAACTTTTGAATATATAATTTATTTTTATTTGT
129 --ATTT-TTTTTGAGTATGATTATATGAGTTTAAATTTTTGAAGATATAATTTATTTTTATTTGT
44568 AGAAGTTTAAATTTATTTTTATTT
191 AGAAGTTTAAATTTATTTTTATTT
* **
44592 GATTATATAAGTTTAAATTTTTAAAGTATAATTTATTTTTATTTGTAGAAGTTTAAATTTGCTTT
1 GATTATACAAGTTTAAATTTTTAAAGTATAATTTATTTTTATTTGTAGAAGTTTAAATTTATTTT
* * *
44657 TTGGTATAATTATATG-GTTTAAAATTTTGAAGGTATAATTTATCTTT-ATTTGTAAAAGTTTAA
66 TTGATATGATTATATGAGTTT-AAATTTTTAAGGTATAATTTAT-TTTAATTTGTAAAAGTTTAA
* * * * * *
44720 ATTTGTTTAGAGTATGATTATATGAGTTTAAATTTTTTAATATATAATTTATTTTTACTTGTAAA
129 ATTTTTTTTGAGTATGATTATATGAGTTTAAATTTTTGAAGATATAATTTATTTTTATTTGTAGA
44785 AGTTTAAATTTATTTTT-TGGTT
194 AGTTTAAATTTATTTTTAT--TT
* * * *
44807 TATTTATA-AGAGTTTAAATTTTTAAGGTATTATTTATCTTTATTTGTAGAAGTTTAAAATTTAT
1 GA-TTATACA-AGTTTAAATTTTTAAAGTATAATTTATTTTTATTTGTAGAAGTTT-AAATTTAT
* * * *
44871 TTTTTGAGTATGATTATACGAGTTTAAATTTTTAAAGTATAATTTA-TTTATATTTATAAAATTT
63 TTTTTGA-TATGATTATATGAGTTTAAATTTTTAAGGTATAATTTATTTTA-ATTTGTAAAAGTT
* * *
44935 TAAATTTATTTCTTAAGCATAATTATA-GAGTTTAAATTTTT-AAGATA
126 TAAATTT-TTT-TTGAGTATGATTATATGAGTTTAAATTTTTGAAGATA
44982 GGATTTTTTT
Statistics
Matches: 703, Mismatches: 89, Indels: 59
0.83 0.10 0.07
Matches are distributed among these distances:
208 1 0.00
209 22 0.03
210 5 0.01
211 43 0.06
212 39 0.06
213 2 0.00
214 68 0.10
215 14 0.02
216 134 0.19
217 40 0.06
218 208 0.30
219 93 0.13
220 34 0.05
ACGTcount: A:0.34, C:0.02, G:0.11, T:0.53
Consensus pattern (214 bp):
GATTATACAAGTTTAAATTTTTAAAGTATAATTTATTTTTATTTGTAGAAGTTTAAATTTATTTT
TTGATATGATTATATGAGTTTAAATTTTTAAGGTATAATTTATTTTAATTTGTAAAAGTTTAAAT
TTTTTTTGAGTATGATTATATGAGTTTAAATTTTTGAAGATATAATTTATTTTTATTTGTAGAAG
TTTAAATTTATTTTTATTT
Found at i:46524 original size:21 final size:23
Alignment explanation
Indices: 46500--46550 Score: 65
Period size: 21 Copynumber: 2.4 Consensus size: 23
46490 ATTAATATTT
46500 TATTATAATTA-A-TTATAATAA
1 TATTATAATTATATTTATAATAA
46521 TATT-T-ATTATATTTATAATAA
1 TATTATAATTATATTTATAATAA
*
46542 TAATATAAT
1 TATTATAAT
46551 ATGATAAAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 6
0.78 0.03 0.19
Matches are distributed among these distances:
19 4 0.16
20 2 0.08
21 16 0.64
22 1 0.04
23 2 0.08
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (23 bp):
TATTATAATTATATTTATAATAA
Found at i:47116 original size:15 final size:15
Alignment explanation
Indices: 47096--47158 Score: 67
Period size: 15 Copynumber: 4.3 Consensus size: 15
47086 AAAATTTTAA
* *
47096 TATATTTATGTATAT
1 TATATTTATATATTT
*
47111 TATATTTATATTTTT
1 TATATTTATATATTT
*
47126 TATATTATATTTATTT
1 TATATT-TATATATTT
47142 TATATTT-TAT-TTT
1 TATATTTATATATTT
47155 TATA
1 TATA
47159 ATTAAAATAA
Statistics
Matches: 41, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
13 7 0.17
14 2 0.05
15 19 0.46
16 13 0.32
ACGTcount: A:0.30, C:0.00, G:0.02, T:0.68
Consensus pattern (15 bp):
TATATTTATATATTT
Found at i:47122 original size:11 final size:11
Alignment explanation
Indices: 47096--47152 Score: 68
Period size: 11 Copynumber: 5.5 Consensus size: 11
47086 AAAATTTTAA
*
47096 TATATT-TATG
1 TATATTATATT
47106 TATATTATATT
1 TATATTATATT
47117 TATATT-T-TT
1 TATATTATATT
47126 TATATTATATT
1 TATATTATATT
*
47137 TATTTTATATT
1 TATATTATATT
47148 T-TATT
1 TATATT
47153 TTTATAATTA
Statistics
Matches: 41, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
9 8 0.20
10 11 0.27
11 22 0.54
ACGTcount: A:0.30, C:0.00, G:0.02, T:0.68
Consensus pattern (11 bp):
TATATTATATT
Found at i:47131 original size:20 final size:21
Alignment explanation
Indices: 47096--47144 Score: 75
Period size: 20 Copynumber: 2.4 Consensus size: 21
47086 AAAATTTTAA
47096 TATATTTATGTATATTATATT
1 TATATTTATGTATATTATATT
*
47117 TATATTT-TTTATATTATATT
1 TATATTTATGTATATTATATT
47137 TAT-TTTAT
1 TATATTTAT
47145 ATTTTATTTT
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
19 3 0.12
20 16 0.62
21 7 0.27
ACGTcount: A:0.31, C:0.00, G:0.02, T:0.67
Consensus pattern (21 bp):
TATATTTATGTATATTATATT
Found at i:47142 original size:18 final size:18
Alignment explanation
Indices: 47106--47157 Score: 59
Period size: 18 Copynumber: 2.8 Consensus size: 18
47096 TATATTTATG
*
47106 TATATTATATTTATATTTTT
1 TATATTATA-TT-TATTTTA
47126 TATATTATATTTATTTTA
1 TATATTATATTTATTTTA
* *
47144 TATTTTATTTTTAT
1 TATATTATATTTAT
47158 AATTAAAATA
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
18 18 0.62
19 2 0.07
20 9 0.31
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (18 bp):
TATATTATATTTATTTTA
Found at i:47171 original size:18 final size:18
Alignment explanation
Indices: 47150--47184 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
47140 TTTATATTTT
*
47150 ATTTTTATAATTAAAATA
1 ATTTTAATAATTAAAATA
*
47168 ATTTTAATTATTAAAAT
1 ATTTTAATAATTAAAAT
47185 TAAAAATTTT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (18 bp):
ATTTTAATAATTAAAATA
Found at i:47172 original size:30 final size:31
Alignment explanation
Indices: 47110--47173 Score: 78
Period size: 30 Copynumber: 2.1 Consensus size: 31
47100 TTTATGTATA
* * *
47110 TTATATTTATATTTTTTATATTATATTTATT
1 TTATATTTATATTTTTTATATTAAAATAATT
47141 TTATATTT-TA-TTTTTATAATTAAAATAATT
1 TTATATTTATATTTTTTAT-ATTAAAATAATT
47171 TTA
1 TTA
47174 ATTATTAAAA
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
29 7 0.24
30 14 0.48
31 8 0.28
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (31 bp):
TTATATTTATATTTTTTATATTAAAATAATT
Found at i:47557 original size:29 final size:30
Alignment explanation
Indices: 47485--47573 Score: 78
Period size: 29 Copynumber: 3.0 Consensus size: 30
47475 ATACGATAAG
*
47485 ATATAATAATAAAAAT--TATTTTTATATAATA
1 ATATATTAATAAAAATAATATTTTTA-AT--TA
* *
47516 ATATATCATTAAAAATAATATTTTTAATTA
1 ATATATTAATAAAAATAATATTTTTAATTA
*
47546 A-ATATTAATAAATA-AATATTTTTTAATT
1 ATATATTAATAAAAATAATA-TTTTTAATT
47574 TTTAAAATTA
Statistics
Matches: 49, Mismatches: 6, Indels: 8
0.78 0.10 0.13
Matches are distributed among these distances:
28 4 0.08
29 19 0.39
30 3 0.06
31 13 0.27
32 2 0.04
33 8 0.16
ACGTcount: A:0.52, C:0.01, G:0.00, T:0.47
Consensus pattern (30 bp):
ATATATTAATAAAAATAATATTTTTAATTA
Found at i:47631 original size:47 final size:48
Alignment explanation
Indices: 47534--47631 Score: 130
Period size: 48 Copynumber: 2.1 Consensus size: 48
47524 TTAAAAATAA
* *
47534 TATTTTTAATTAAATATTAATAAATAAATATTTTTTAATTTTTAAAAT
1 TATTTTTAATTAAAAATTAATAAATAAATATTTTTTAATATTTAAAAT
*
47582 TATTTTTAATTTAAAAACTTAA-AATTAAAT-TTTTTT-ATATTTAAAAT
1 TATTTTTAA-TTAAAAA-TTAATAAATAAATATTTTTTAATATTTAAAAT
47629 TAT
1 TAT
47632 CAAAATTTAA
Statistics
Matches: 45, Mismatches: 3, Indels: 5
0.85 0.06 0.09
Matches are distributed among these distances:
47 13 0.29
48 15 0.33
49 13 0.29
50 4 0.09
ACGTcount: A:0.45, C:0.01, G:0.00, T:0.54
Consensus pattern (48 bp):
TATTTTTAATTAAAAATTAATAAATAAATATTTTTTAATATTTAAAAT
Found at i:48157 original size:17 final size:17
Alignment explanation
Indices: 48135--48185 Score: 66
Period size: 17 Copynumber: 2.8 Consensus size: 17
48125 CAAATGATTT
48135 TATAAAAATAATTAAAA
1 TATAAAAATAATTAAAA
*
48152 TATAAAAATATTTTAAAA
1 TATAAAAATA-ATTAAAA
48170 TATATAATAATAATTA
1 TATA-AA-AATAATTA
48186 TTAATATATT
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
17 10 0.34
18 10 0.34
19 5 0.17
20 4 0.14
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (17 bp):
TATAAAAATAATTAAAA
Found at i:48167 original size:18 final size:18
Alignment explanation
Indices: 48135--48225 Score: 71
Period size: 18 Copynumber: 4.9 Consensus size: 18
48125 CAAATGATTT
*
48135 TATAAAAATA-ATTAAAA
1 TATAAAAATATTTTAAAA
48152 TATAAAAATATTTTAAAA
1 TATAAAAATATTTTAAAA
*
48170 TATATAATAATAATTATTAATA
1 TATA-AA-AAT-ATT-TTAAAA
* *
48192 TATTAAAAT-TTATATAAA
1 TATAAAAATATTTTA-AAA
*
48210 TAT-AAATTATTTTAAA
1 TATAAAAATATTTTAAA
48226 TTTAATTATA
Statistics
Matches: 60, Mismatches: 7, Indels: 14
0.74 0.09 0.17
Matches are distributed among these distances:
17 18 0.30
18 21 0.35
19 2 0.03
20 6 0.10
21 5 0.08
22 8 0.13
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (18 bp):
TATAAAAATATTTTAAAA
Found at i:48200 original size:40 final size:40
Alignment explanation
Indices: 48136--48213 Score: 95
Period size: 40 Copynumber: 1.9 Consensus size: 40
48126 AAATGATTTT
*
48136 ATAAAAATAATTAAAATATAAAAATATTTTA-AAATATATA
1 ATAAAAATAATTAAAATATAAAAAT-TTATATAAATATATA
* * * *
48176 ATAATAATTATTAATATATTAAAATTTATATAAATATA
1 ATAAAAATAATTAAAATATAAAAATTTATATAAATATA
48214 AATTATTTTA
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
39 4 0.12
40 28 0.88
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (40 bp):
ATAAAAATAATTAAAATATAAAAATTTATATAAATATATA
Found at i:48262 original size:23 final size:23
Alignment explanation
Indices: 48232--48287 Score: 71
Period size: 23 Copynumber: 2.4 Consensus size: 23
48222 TAAATTTAAT
48232 TATAATAT-ATTAAAATA-AATAAA
1 TATAATATGA-TAAAATATAA-AAA
48255 TATAATATGATAAAATATAAAAA
1 TATAATATGATAAAATATAAAAA
*
48278 TATTATATGA
1 TATAATATGA
48288 GTGCTTTAAA
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
23 27 0.90
24 3 0.10
ACGTcount: A:0.61, C:0.00, G:0.04, T:0.36
Consensus pattern (23 bp):
TATAATATGATAAAATATAAAAA
Found at i:49559 original size:19 final size:21
Alignment explanation
Indices: 49525--49565 Score: 68
Period size: 19 Copynumber: 2.0 Consensus size: 21
49515 ATTTATAAAT
49525 TTTAATTAATTAAAATTATTA
1 TTTAATTAATTAAAATTATTA
49546 TTTAATT-A-TAAAATTATTA
1 TTTAATTAATTAAAATTATTA
49565 T
1 T
49566 AATTATTTAA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
19 12 0.60
20 1 0.05
21 7 0.35
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (21 bp):
TTTAATTAATTAAAATTATTA
Found at i:49576 original size:19 final size:19
Alignment explanation
Indices: 49527--49576 Score: 59
Period size: 19 Copynumber: 2.6 Consensus size: 19
49517 TTATAAATTT
*
49527 TAATTAATTAAAATTATTA
1 TAATTATTTAAAATTATTA
49546 T--TTAATTATAAAATTATTA
1 TAATT-ATT-TAAAATTATTA
49565 TAATTATTTAAA
1 TAATTATTTAAA
49577 TTAATTTATA
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
17 2 0.08
18 2 0.08
19 17 0.65
20 3 0.12
21 2 0.08
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (19 bp):
TAATTATTTAAAATTATTA
Found at i:50245 original size:30 final size:30
Alignment explanation
Indices: 50204--50271 Score: 86
Period size: 30 Copynumber: 2.3 Consensus size: 30
50194 AATTTTTATA
* *
50204 TAAATTA-TAAATTTTTAATT-TCATTAAAT
1 TAAATTATTAAATTTAT-ATTATCAATAAAT
*
50233 TAAATTATTAAATTTATATTATTAATAAAT
1 TAAATTATTAAATTTATATTATCAATAAAT
50263 TAAATTATT
1 TAAATTATT
50272 TATATTAATT
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
29 10 0.29
30 24 0.71
ACGTcount: A:0.47, C:0.01, G:0.00, T:0.51
Consensus pattern (30 bp):
TAAATTATTAAATTTATATTATCAATAAAT
Found at i:50406 original size:18 final size:18
Alignment explanation
Indices: 50385--50422 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 18
50375 AAAATGACTT
50385 AATTTATTAA-TAATAAAA
1 AATTTA-TAATTAATAAAA
50403 AATTTATAATTTAATAAAA
1 AATTTATAA-TTAATAAAA
50422 A
1 A
50423 TAAAATTTTA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
17 3 0.17
18 6 0.33
19 9 0.50
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (18 bp):
AATTTATAATTAATAAAA
Found at i:50432 original size:24 final size:24
Alignment explanation
Indices: 50384--50464 Score: 92
Period size: 24 Copynumber: 3.3 Consensus size: 24
50374 TAAAATGACT
* * *
50384 TAATTTATTAATAATAAAAAATTTA
1 TAATTTAATAAAAAT-AAAATTTTA
50409 TAATTTAATAAAAATAAAATTTTA
1 TAATTTAATAAAAATAAAATTTTA
* *
50433 TAATTTAAATAAAAAT-TAATTTAA
1 TAATTT-AATAAAAATAAAATTTTA
50457 TAATTTAA
1 TAATTTAA
50465 AATGTAAATT
Statistics
Matches: 50, Mismatches: 5, Indels: 4
0.85 0.08 0.07
Matches are distributed among these distances:
23 2 0.04
24 26 0.52
25 22 0.44
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (24 bp):
TAATTTAATAAAAATAAAATTTTA
Found at i:51895 original size:33 final size:33
Alignment explanation
Indices: 51853--51936 Score: 159
Period size: 33 Copynumber: 2.5 Consensus size: 33
51843 GTTTCAGATC
51853 AATGCCTGGAAATGGGGATCTTACAGGATTCAG
1 AATGCCTGGAAATGGGGATCTTACAGGATTCAG
51886 AATGCCTGGAAATGGGGATCTTACAGGATTCAG
1 AATGCCTGGAAATGGGGATCTTACAGGATTCAG
*
51919 AATGCCTGGAAATAGGGA
1 AATGCCTGGAAATGGGGA
51937 CTTCAAAGTT
Statistics
Matches: 50, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
33 50 1.00
ACGTcount: A:0.32, C:0.14, G:0.31, T:0.23
Consensus pattern (33 bp):
AATGCCTGGAAATGGGGATCTTACAGGATTCAG
Found at i:52646 original size:3 final size:3
Alignment explanation
Indices: 52638--52667 Score: 51
Period size: 3 Copynumber: 10.0 Consensus size: 3
52628 ATTTGAAGCG
*
52638 ACC ACC ACC ACC ACC ACC ACC AAC ACC ACC
1 ACC ACC ACC ACC ACC ACC ACC ACC ACC ACC
52668 CCCGCTTCCA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.37, C:0.63, G:0.00, T:0.00
Consensus pattern (3 bp):
ACC
Found at i:56239 original size:5 final size:6
Alignment explanation
Indices: 56221--56247 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
56211 TCCAGGAGAA
56221 GGTGGG GGTGGG GGTGGG GGTGGG GGT
1 GGTGGG GGTGGG GGTGGG GGTGGG GGT
56248 AGTGAAGGAG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.00, C:0.00, G:0.81, T:0.19
Consensus pattern (6 bp):
GGTGGG
Found at i:56343 original size:33 final size:33
Alignment explanation
Indices: 56304--56557 Score: 226
Period size: 33 Copynumber: 7.5 Consensus size: 33
56294 CAGAAGGGCT
*
56304 GCTAGGAGGTGGTGGTGATTGTTGCATAGGAGAG
1 GCTAGGAGGTGGTGGTGATTGCTGCATAGGAG-G
56338 G-TAGGAGGAGGTGGTGGTGATTGCTGCATAGGAGG
1 GCT---AGGAGGTGGTGGTGATTGCTGCATAGGAGG
* * *
56373 GCTGGGAGGTGGTGGTGGTTGCTG-ATTAGGAGT
1 GCTAGGAGGTGGTGGTGATTGCTGCA-TAGGAGG
* * *
56406 TCTAGAAGGTGGTGGTGATTGCTGCTTAGGAGG
1 GCTAGGAGGTGGTGGTGATTGCTGCATAGGAGG
** * * * *
56439 GCTAAAAGGTGGTGGAGATGGTTG-ATTAGAAGG
1 GCTAGGAGGTGGTGGTGATTGCTGCA-TAGGAGG
* * *
56472 GCTAGGAGATGGTGGTGATTGCTGCTTGGGAGAGGG
1 GCTAGGAGGTGGTGGTGATTGCTGCAT-AG-GA-GG
* * *
56508 GCTAGGAGGTGGTGATGATTGTTGCGTAGGAGG
1 GCTAGGAGGTGGTGGTGATTGCTGCATAGGAGG
*
56541 GCTAGCAGGTGGTGGTG
1 GCTAGGAGGTGGTGGTG
56558 GTGGTGGTGA
Statistics
Matches: 176, Mismatches: 33, Indels: 23
0.76 0.14 0.10
Matches are distributed among these distances:
32 1 0.01
33 113 0.64
34 4 0.02
35 4 0.02
36 54 0.31
ACGTcount: A:0.19, C:0.07, G:0.48, T:0.26
Consensus pattern (33 bp):
GCTAGGAGGTGGTGGTGATTGCTGCATAGGAGG
Found at i:58246 original size:87 final size:87
Alignment explanation
Indices: 58095--58259 Score: 260
Period size: 87 Copynumber: 1.9 Consensus size: 87
58085 TGTAAAATAA
*
58095 TTTCATTGAAAAAGTTAAAAGAACGGGAAAGAAAAAAAGCTTTTGAGACTTAAAAGAAAAAAGTT
1 TTTCATTGAAAAAGTTAAAAGAACAGGAAAGAAAAAAAGCTTTTGAGACTTAAAAGAAAAAAGTT
*
58160 AAAAGAAAGAACTCACGTAAAG
66 AAAAGAAAAAACTCACGTAAAG
* * * *
58182 TTTCATTGAAAATGTTAAAAGAACAGGAAA-CAAAAAAGCTTTTGGAGACTTCAAAGAAAGAAGT
1 TTTCATTGAAAAAGTTAAAAGAACAGGAAAGAAAAAAAGCTTTT-GAGACTTAAAAGAAAAAAGT
58246 TAAAAGAAAAAACT
65 TAAAAGAAAAAACT
58260 TGTGTTAAGT
Statistics
Matches: 71, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
86 12 0.17
87 59 0.83
ACGTcount: A:0.53, C:0.08, G:0.18, T:0.21
Consensus pattern (87 bp):
TTTCATTGAAAAAGTTAAAAGAACAGGAAAGAAAAAAAGCTTTTGAGACTTAAAAGAAAAAAGTT
AAAAGAAAAAACTCACGTAAAG
Found at i:61052 original size:22 final size:23
Alignment explanation
Indices: 61024--61066 Score: 61
Period size: 22 Copynumber: 1.9 Consensus size: 23
61014 GAATAATTAA
* *
61024 AATATGATAT-AATATAAAAAAT
1 AATATGACATGAATACAAAAAAT
61046 AATATGACATGAATACAAAAA
1 AATATGACATGAATACAAAAA
61067 TATGTAAAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 9 0.50
23 9 0.50
ACGTcount: A:0.63, C:0.05, G:0.07, T:0.26
Consensus pattern (23 bp):
AATATGACATGAATACAAAAAAT
Found at i:61901 original size:18 final size:20
Alignment explanation
Indices: 61858--61901 Score: 56
Period size: 18 Copynumber: 2.3 Consensus size: 20
61848 TTAATTTTTT
*
61858 TAAACTCTTTCAAATATTAA
1 TAAAATCTTTCAAATATTAA
*
61878 TCAAATCTTT-AAAT-TTAA
1 TAAAATCTTTCAAATATTAA
61896 TAAAAT
1 TAAAAT
61902 AACCCGACTC
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
18 9 0.43
19 4 0.19
20 8 0.38
ACGTcount: A:0.48, C:0.11, G:0.00, T:0.41
Consensus pattern (20 bp):
TAAAATCTTTCAAATATTAA
Found at i:62329 original size:20 final size:20
Alignment explanation
Indices: 62292--62329 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
62282 ATATTTTAAT
*
62292 ATATTATTTTGAATTTATTG
1 ATATTATTTTAAATTTATTG
62312 ATATT-TTTTAAATATTAT
1 ATATTATTTTAAAT-TTAT
62330 ATATTTATAG
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
19 7 0.44
20 9 0.56
ACGTcount: A:0.34, C:0.00, G:0.05, T:0.61
Consensus pattern (20 bp):
ATATTATTTTAAATTTATTG
Found at i:65718 original size:20 final size:20
Alignment explanation
Indices: 65693--65731 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
65683 ATTTTAATGT
*
65693 TAAATAAATATTAAATATAG
1 TAAATAAATAATAAATATAG
*
65713 TAAATAATTAATAAATATA
1 TAAATAAATAATAAATATA
65732 TATTTGACTA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.62, C:0.00, G:0.03, T:0.36
Consensus pattern (20 bp):
TAAATAAATAATAAATATAG
Found at i:66720 original size:2 final size:2
Alignment explanation
Indices: 66713--66750 Score: 69
Period size: 2 Copynumber: 19.5 Consensus size: 2
66703 TTAGTTCAAT
66713 TA TA TA TA TA TA -A TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
66751 TCTCAATCAT
Statistics
Matches: 35, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
1 1 0.03
2 34 0.97
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:69396 original size:20 final size:21
Alignment explanation
Indices: 69368--69415 Score: 57
Period size: 20 Copynumber: 2.4 Consensus size: 21
69358 AAGTATTAAT
*
69368 TAACATTTAATAAA-AAATAA
1 TAACTTTTAATAAATAAATAA
*
69388 TAACTTTT-ATAAATATATAA
1 TAACTTTTAATAAATAAATAA
69408 TAA-TTTTA
1 TAACTTTTA
69416 TCATTTATAC
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
19 9 0.38
20 15 0.62
ACGTcount: A:0.54, C:0.04, G:0.00, T:0.42
Consensus pattern (21 bp):
TAACTTTTAATAAATAAATAA
Found at i:70457 original size:17 final size:17
Alignment explanation
Indices: 70413--70445 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
70403 AAATTTATAA
*
70413 TAAAATAAAATAATTAT
1 TAAAATATAATAATTAT
70430 TAAAATATAATAATTA
1 TAAAATATAATAATTA
70446 ATTATAATTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (17 bp):
TAAAATATAATAATTAT
Found at i:71105 original size:37 final size:38
Alignment explanation
Indices: 71023--71113 Score: 95
Period size: 36 Copynumber: 2.5 Consensus size: 38
71013 ATAATATAAA
*
71023 TAAATTTAAAACATAAAATTAATTAAAAAAAAATTAACT
1 TAAATTTATAACAT-AAATTAATTAAAAAAAAATTAACT
* *
71062 T--CTTTATAACAT-AATTAATTAAATAAAAAATT-ATT
1 TAAATTTATAACATAAATTAATTAAA-AAAAAATTAACT
71097 TAAATTTAT-ACA-AAATT
1 TAAATTTATAACATAAATT
71114 TAACTTGAGT
Statistics
Matches: 44, Mismatches: 4, Indels: 11
0.75 0.07 0.19
Matches are distributed among these distances:
35 14 0.32
36 15 0.34
37 14 0.32
39 1 0.02
ACGTcount: A:0.57, C:0.05, G:0.00, T:0.37
Consensus pattern (38 bp):
TAAATTTATAACATAAATTAATTAAAAAAAAATTAACT
Found at i:73537 original size:19 final size:20
Alignment explanation
Indices: 73496--73543 Score: 71
Period size: 20 Copynumber: 2.5 Consensus size: 20
73486 TTAATATTAG
*
73496 TAAATTTAAAAAATTAATTT
1 TAAATTTAAAAAATTAATAT
*
73516 TAATTTTAAAAAATTAA-AT
1 TAAATTTAAAAAATTAATAT
73535 TAAATTTAA
1 TAAATTTAA
73544 TAATTATTGA
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
19 9 0.36
20 16 0.64
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (20 bp):
TAAATTTAAAAAATTAATAT
Found at i:74966 original size:3 final size:3
Alignment explanation
Indices: 74958--74986 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
74948 AATGGAAGCG
74958 GAA GAA GAA GAA GAA GAA GAA GAA GAA GA
1 GAA GAA GAA GAA GAA GAA GAA GAA GAA GA
74987 GTTTTCGTTT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.66, C:0.00, G:0.34, T:0.00
Consensus pattern (3 bp):
GAA
Found at i:76935 original size:25 final size:26
Alignment explanation
Indices: 76898--76971 Score: 73
Period size: 26 Copynumber: 2.8 Consensus size: 26
76888 CATTTCATAA
76898 AATTTTTTAAATAAATATAAATAATTT
1 AATTTTTT-AATAAATATAAATAATTT
* *
76925 TA-TTTTTAATAAAGTGAT--ATTATTT
1 AATTTTTTAATAAA-T-ATAAATAATTT
76950 AATTTTTTAATAATATATAAAT
1 AATTTTTTAATAA-ATATAAAT
76972 TTATATATGC
Statistics
Matches: 38, Mismatches: 3, Indels: 12
0.72 0.06 0.23
Matches are distributed among these distances:
25 15 0.39
26 17 0.45
27 6 0.16
ACGTcount: A:0.46, C:0.00, G:0.03, T:0.51
Consensus pattern (26 bp):
AATTTTTTAATAAATATAAATAATTT
Found at i:77929 original size:22 final size:22
Alignment explanation
Indices: 77901--77944 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
77891 TTTAATTATT
77901 TTTTAAAAATAA-AAATATATAA
1 TTTTAAAAA-AATAAATATATAA
*
77923 TTTTAAAAAAATTAATATATAA
1 TTTTAAAAAAATAAATATATAA
77945 ATTGATATTA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
21 2 0.10
22 18 0.90
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (22 bp):
TTTTAAAAAAATAAATATATAA
Found at i:77964 original size:21 final size:23
Alignment explanation
Indices: 77938--77987 Score: 63
Period size: 21 Copynumber: 2.3 Consensus size: 23
77928 AAAAAATTAA
*
77938 TATATAAATTGATA-TTA-TATT
1 TATATAAATTGAAATTTATTATT
77959 TATAT--ATTGAAATTTATTATT
1 TATATAAATTGAAATTTATTATT
77980 TATATAAA
1 TATATAAA
77988 AAAATAAAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 6
0.77 0.03 0.19
Matches are distributed among these distances:
19 6 0.25
20 3 0.12
21 14 0.58
23 1 0.04
ACGTcount: A:0.44, C:0.00, G:0.04, T:0.52
Consensus pattern (23 bp):
TATATAAATTGAAATTTATTATT
Found at i:78019 original size:42 final size:38
Alignment explanation
Indices: 77973--78056 Score: 105
Period size: 39 Copynumber: 2.1 Consensus size: 38
77963 TATTGAAATT
*
77973 TATTATTTATATAAAAAAATAAAAATAAATTTAAATAATTAA
1 TATTATTTA-AT--AAAAATAAAAATAAATTT-AATAATAAA
* *
78015 TATTATTTAATTAAAATAATAATAAATTTAATAATAAA
1 TATTATTTAATAAAAATAAAAATAAATTTAATAATAAA
78053 TATT
1 TATT
78057 TTAAAATTTA
Statistics
Matches: 39, Mismatches: 3, Indels: 4
0.85 0.07 0.09
Matches are distributed among these distances:
38 12 0.31
39 16 0.41
41 2 0.05
42 9 0.23
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (38 bp):
TATTATTTAATAAAAATAAAAATAAATTTAATAATAAA
Found at i:78685 original size:78 final size:78
Alignment explanation
Indices: 78591--78739 Score: 205
Period size: 78 Copynumber: 1.9 Consensus size: 78
78581 TATGTAATGT
*
78591 AATAGTATTTTATGTAATTTTGATTAA-AATT-TTTCTTA-AGTAATATATTATATAACTGGCAA
1 AATAGTATTTTATGTAATTTTGA-TAATAATTATTT-TTAGA-TAATATATTATATAACTGACAA
78653 TATTTTTACGTAATTA
63 TATTTTTACGTAATTA
* * * *
78669 AATAGTATTTTTTGTAATTTTGATAATAATTATTTTTAGATAATATTTTATATAATTGATAATAT
1 AATAGTATTTTATGTAATTTTGATAATAATTATTTTTAGATAATATATTATATAACTGACAATAT
78734 TTTTAC
66 TTTTAC
78740 ATTATAAAGT
Statistics
Matches: 63, Mismatches: 5, Indels: 6
0.85 0.07 0.08
Matches are distributed among these distances:
77 3 0.05
78 56 0.89
79 4 0.06
ACGTcount: A:0.37, C:0.03, G:0.08, T:0.52
Consensus pattern (78 bp):
AATAGTATTTTATGTAATTTTGATAATAATTATTTTTAGATAATATATTATATAACTGACAATAT
TTTTACGTAATTA
Found at i:78712 original size:26 final size:25
Alignment explanation
Indices: 78674--78725 Score: 61
Period size: 26 Copynumber: 2.0 Consensus size: 25
78664 AATTAAATAG
*
78674 TATTTTTTGTAAT-TTTGATAATAAT
1 TATTTTTAGTAATATTTGAT-ATAAT
*
78699 TATTTTTAGATAATATTTTATATAAT
1 TATTTTTAG-TAATATTTGATATAAT
78725 T
1 T
78726 GATAATATTT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
25 8 0.35
26 10 0.43
27 5 0.22
ACGTcount: A:0.35, C:0.00, G:0.06, T:0.60
Consensus pattern (25 bp):
TATTTTTAGTAATATTTGATATAAT
Found at i:78765 original size:78 final size:78
Alignment explanation
Indices: 78591--78766 Score: 189
Period size: 78 Copynumber: 2.3 Consensus size: 78
78581 TATGTAATGT
* *
78591 AATAGTATTTTATGTAATTTTGATTAAAATTTTTCTTAAGTAATATATTATATAACTGGCAATAT
1 AATAATATTTTATGTAATTTTGATTAAAATTTTTCTTAAGTAATATATTATATAACTGACAATAT
*
78656 TTTTACGTAATTA
66 TTTTACATAATTA
* * * * *
78669 AATAGTATTTTTTGTAATTTTGA-TAATAATTATTT-TT-AGATAATATTTTATATAATTGATAA
1 AATAATATTTTATGTAATTTTGATTAA-AATT-TTTCTTAAG-TAATATATTATATAACTGACAA
*
78731 TATTTTTACATTA-TA
63 TATTTTTACATAATTA
* *
78746 AAGTAATGTTTTATATAATTT
1 AA-TAATATTTTATGTAATTT
78767 CGTTGAAAAA
Statistics
Matches: 83, Mismatches: 11, Indels: 8
0.81 0.11 0.08
Matches are distributed among these distances:
77 9 0.11
78 71 0.86
79 3 0.04
ACGTcount: A:0.38, C:0.03, G:0.08, T:0.52
Consensus pattern (78 bp):
AATAATATTTTATGTAATTTTGATTAAAATTTTTCTTAAGTAATATATTATATAACTGACAATAT
TTTTACATAATTA
Found at i:79226 original size:20 final size:21
Alignment explanation
Indices: 79188--79246 Score: 75
Period size: 22 Copynumber: 2.8 Consensus size: 21
79178 TACGTAACTT
*
79188 ATAATATATCTATATAATTATA
1 ATAATATATGTATA-AATTATA
*
79210 ATAATAT-TGTATAAATTTTA
1 ATAATATATGTATAAATTATA
79230 ATAATAATATGTATAAA
1 ATAAT-ATATGTATAAA
79247 AAAAGTAACC
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
20 11 0.33
21 7 0.21
22 15 0.45
ACGTcount: A:0.51, C:0.02, G:0.03, T:0.44
Consensus pattern (21 bp):
ATAATATATGTATAAATTATA
Found at i:81244 original size:23 final size:23
Alignment explanation
Indices: 81218--81264 Score: 85
Period size: 23 Copynumber: 2.0 Consensus size: 23
81208 CTTTAACCTT
*
81218 TAATTTTATATTAAAGCTTTAAC
1 TAATTTTATATTAAAACTTTAAC
81241 TAATTTTATATTAAAACTTTAAC
1 TAATTTTATATTAAAACTTTAAC
81264 T
1 T
81265 TTTAAGTAGT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.40, C:0.09, G:0.02, T:0.49
Consensus pattern (23 bp):
TAATTTTATATTAAAACTTTAAC
Found at i:82134 original size:16 final size:17
Alignment explanation
Indices: 82095--82136 Score: 59
Period size: 16 Copynumber: 2.5 Consensus size: 17
82085 ATAAGTGAAG
82095 ATATAAAATTATAAGTA
1 ATATAAAATTATAAGTA
* *
82112 ATTTAAAATT-TAATTA
1 ATATAAAATTATAAGTA
82128 ATATAAAAT
1 ATATAAAAT
82137 AATATTATTT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
16 13 0.59
17 9 0.41
ACGTcount: A:0.57, C:0.00, G:0.02, T:0.40
Consensus pattern (17 bp):
ATATAAAATTATAAGTA
Found at i:82901 original size:25 final size:25
Alignment explanation
Indices: 82873--82924 Score: 61
Period size: 25 Copynumber: 2.1 Consensus size: 25
82863 ATAAATATTT
82873 TTATTAAATTT-ATTTAAAAATTAAA
1 TTATT-AATTTGATTTAAAAATTAAA
* * *
82898 TTATTTATTTGATTTATAAATTTAA
1 TTATTAATTTGATTTAAAAATTAAA
82923 TT
1 TT
82925 CTTATAAATT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
24 4 0.17
25 19 0.83
ACGTcount: A:0.42, C:0.00, G:0.02, T:0.56
Consensus pattern (25 bp):
TTATTAATTTGATTTAAAAATTAAA
Found at i:83666 original size:23 final size:23
Alignment explanation
Indices: 83640--83716 Score: 79
Period size: 23 Copynumber: 3.5 Consensus size: 23
83630 AATATCGAAG
*
83640 AAATAGTTTAATATTTTATATAA
1 AAATAATTTAATATTTTATATAA
* * **
83663 AAATAATCT--GATTTTAT-TTG
1 AAATAATTTAATATTTTATATAA
*
83683 AAATATTTTAATATTTTATATAA
1 AAATAATTTAATATTTTATATAA
83706 AAATAATTTAA
1 AAATAATTTAA
83717 AAATATGATC
Statistics
Matches: 40, Mismatches: 11, Indels: 6
0.70 0.19 0.11
Matches are distributed among these distances:
20 8 0.20
21 7 0.17
22 7 0.17
23 18 0.45
ACGTcount: A:0.47, C:0.01, G:0.04, T:0.48
Consensus pattern (23 bp):
AAATAATTTAATATTTTATATAA
Found at i:84262 original size:17 final size:16
Alignment explanation
Indices: 84231--84261 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
84221 TTTTAAAATT
84231 ATTCTAATTTTTTTTA
1 ATTCTAATTTTTTTTA
84247 ATTCTAATTTTTTTT
1 ATTCTAATTTTTTTT
84262 TTCATTTCTC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.23, C:0.06, G:0.00, T:0.71
Consensus pattern (16 bp):
ATTCTAATTTTTTTTA
Found at i:85571 original size:22 final size:23
Alignment explanation
Indices: 85545--85594 Score: 59
Period size: 22 Copynumber: 2.2 Consensus size: 23
85535 TGAACGTGAC
*
85545 ATAAACACAACATA-AAAAATAAT
1 ATAAA-ACAAAATACAAAAATAAT
*
85568 -TAAAATAAAATACAAAAATAAT
1 ATAAAACAAAATACAAAAATAAT
85590 ATAAA
1 ATAAA
85595 TATGATATGA
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
21 6 0.26
22 13 0.57
23 4 0.17
ACGTcount: A:0.72, C:0.08, G:0.00, T:0.20
Consensus pattern (23 bp):
ATAAAACAAAATACAAAAATAAT
Found at i:85867 original size:22 final size:21
Alignment explanation
Indices: 85838--85879 Score: 66
Period size: 22 Copynumber: 2.0 Consensus size: 21
85828 TATATATATA
85838 AATTAAATATAACATAAAAAT
1 AATTAAATATAACATAAAAAT
*
85859 AATTAAAATATAATATAAAAA
1 AATT-AAATATAACATAAAAA
85880 ATAACATAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 4 0.21
22 15 0.79
ACGTcount: A:0.69, C:0.02, G:0.00, T:0.29
Consensus pattern (21 bp):
AATTAAATATAACATAAAAAT
Found at i:86059 original size:22 final size:22
Alignment explanation
Indices: 86034--86076 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
86024 CTCTTTATTT
* *
86034 CTTTCTCTTTTCTCTCTTTTCC
1 CTTTCTCTTTTCCCTCCTTTCC
86056 CTTTCTCTTTTCCCTCCTTTC
1 CTTTCTCTTTTCCCTCCTTTC
86077 TTTCCCCTTA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.00, C:0.40, G:0.00, T:0.60
Consensus pattern (22 bp):
CTTTCTCTTTTCCCTCCTTTCC
Found at i:86064 original size:13 final size:13
Alignment explanation
Indices: 86046--86070 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
86036 TTCTCTTTTC
86046 TCTCTTTTCCCTT
1 TCTCTTTTCCCTT
86059 TCTCTTTTCCCT
1 TCTCTTTTCCCT
86071 CCTTTCTTTC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.00, C:0.40, G:0.00, T:0.60
Consensus pattern (13 bp):
TCTCTTTTCCCTT
Found at i:86545 original size:31 final size:31
Alignment explanation
Indices: 86509--86656 Score: 104
Period size: 31 Copynumber: 4.7 Consensus size: 31
86499 ATCAAATTAT
86509 TTTAAATTTAAAATAA-CTTAAACTTAAAAAA
1 TTTAAATTTAAAATAATC-TAAACTTAAAAAA
* * * *
86540 TTTAAACTCAAAATTATCTAAACTTAAAAAT
1 TTTAAATTTAAAATAATCTAAACTTAAAAAA
** * * *
86571 TTTAAATTTAATTTATTC-AAATTTATAAATA
1 TTTAAATTTAAAATAATCTAAACTTA-AAAAA
* *
86602 TTTAAATTAAAAATAATAC-AAACCTAAAATAAAA
1 TTTAAATTTAAAATAAT-CTAAA-CT-TAA-AAAA
* *
86636 ATTAAATTTAAAATAACCTAA
1 TTTAAATTTAAAATAATCTAA
86657 TCCAATCTCC
Statistics
Matches: 87, Mismatches: 23, Indels: 11
0.72 0.19 0.09
Matches are distributed among these distances:
30 6 0.07
31 53 0.61
32 5 0.06
33 3 0.03
34 20 0.23
ACGTcount: A:0.55, C:0.08, G:0.00, T:0.36
Consensus pattern (31 bp):
TTTAAATTTAAAATAATCTAAACTTAAAAAA
Found at i:86608 original size:16 final size:15
Alignment explanation
Indices: 86509--86616 Score: 74
Period size: 15 Copynumber: 7.0 Consensus size: 15
86499 ATCAAATTAT
86509 TTTAAATTTAAAATAA
1 TTTAAATTTAAAAT-A
* * *
86525 CTTAAACTTAAAAAA
1 TTTAAATTTAAAATA
* *
86540 TTTAAACTCAAAATTA
1 TTTAAATTTAAAA-TA
* *
86556 TCTAAACTTAAAA-A
1 TTTAAATTTAAAATA
**
86570 TTTTAAATTTAATTTA
1 -TTTAAATTTAAAATA
*
86586 TTCAAATTTATAAATA
1 TTTAAATTTA-AAATA
*
86602 TTTAAATTAAAAATA
1 TTTAAATTTAAAATA
86617 ATACAAACCT
Statistics
Matches: 71, Mismatches: 17, Indels: 9
0.73 0.18 0.09
Matches are distributed among these distances:
14 1 0.01
15 35 0.49
16 35 0.49
ACGTcount: A:0.53, C:0.06, G:0.00, T:0.41
Consensus pattern (15 bp):
TTTAAATTTAAAATA
Found at i:87325 original size:30 final size:31
Alignment explanation
Indices: 87271--87328 Score: 82
Period size: 30 Copynumber: 1.9 Consensus size: 31
87261 TATGTGTATT
87271 TTTTAAAAAATTAATATTTAATAAATTTAAA
1 TTTTAAAAAATTAATATTTAATAAATTTAAA
* * *
87302 TTTT-AAATATTAATTTTTTATAAATTT
1 TTTTAAAAAATTAATATTTAATAAATTT
87329 TTTAATTTTT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
30 20 0.83
31 4 0.17
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (31 bp):
TTTTAAAAAATTAATATTTAATAAATTTAAA
Found at i:87861 original size:16 final size:17
Alignment explanation
Indices: 87828--87885 Score: 64
Period size: 16 Copynumber: 3.4 Consensus size: 17
87818 ATTTAACGGT
87828 TTATTTTATTTAAATTA
1 TTATTTTATTTAAATTA
*
87845 TTATTTT-TTTAATTTA
1 TTATTTTATTTAAATTA
**
87861 TTAAATTAAATTTAAATTA
1 TT--ATTTTATTTAAATTA
87880 TTATTT
1 TTATTT
87886 AATTAATAAA
Statistics
Matches: 33, Mismatches: 5, Indels: 6
0.75 0.11 0.14
Matches are distributed among these distances:
16 10 0.30
17 10 0.30
18 3 0.09
19 10 0.30
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (17 bp):
TTATTTTATTTAAATTA
Found at i:87911 original size:22 final size:23
Alignment explanation
Indices: 87857--87911 Score: 62
Period size: 21 Copynumber: 2.5 Consensus size: 23
87847 ATTTTTTTAA
**
87857 TTTA-TTAAATTAAATTTAAATT
1 TTTATTTAAATTAAATAAAAATT
*
87879 ATTATTT-AATT-AATAAAAATT
1 TTTATTTAAATTAAATAAAAATT
87900 TTTATTTAAATT
1 TTTATTTAAATT
87912 TAATTATAAA
Statistics
Matches: 27, Mismatches: 4, Indels: 4
0.77 0.11 0.11
Matches are distributed among these distances:
21 14 0.52
22 11 0.41
23 2 0.07
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (23 bp):
TTTATTTAAATTAAATAAAAATT
Found at i:88880 original size:14 final size:16
Alignment explanation
Indices: 88849--88885 Score: 60
Period size: 14 Copynumber: 2.4 Consensus size: 16
88839 TATTAAAAAA
88849 AAAATTTAATTAATTT
1 AAAATTTAATTAATTT
88865 AAAATTTAA-T-ATTT
1 AAAATTTAATTAATTT
88879 AAAATTT
1 AAAATTT
88886 TTTATTTTTG
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
14 11 0.52
15 1 0.05
16 9 0.43
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (16 bp):
AAAATTTAATTAATTT
Found at i:91060 original size:23 final size:22
Alignment explanation
Indices: 91034--91096 Score: 65
Period size: 23 Copynumber: 2.8 Consensus size: 22
91024 TAATTAGACC
*
91034 TTTAATTTAAGTTTAGATGAGCT
1 TTTAATTTAAGTTTAAATGAG-T
*
91057 TTTAGTTT-AGATTTAAATGAGT
1 TTTAATTTAAG-TTTAAATGAGT
* *
91079 TTAAATTTAAATTTAAAT
1 TTTAATTTAAGTTTAAAT
91097 TTTATTAAAT
Statistics
Matches: 33, Mismatches: 5, Indels: 5
0.77 0.12 0.12
Matches are distributed among these distances:
22 16 0.48
23 17 0.52
ACGTcount: A:0.37, C:0.02, G:0.13, T:0.49
Consensus pattern (22 bp):
TTTAATTTAAGTTTAAATGAGT
Found at i:91081 original size:16 final size:16
Alignment explanation
Indices: 91060--91090 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
91050 ATGAGCTTTT
*
91060 AGTTTAGATTTAAATG
1 AGTTTAAATTTAAATG
91076 AGTTTAAATTTAAAT
1 AGTTTAAATTTAAAT
91091 TTAAATTTTA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.13, T:0.45
Consensus pattern (16 bp):
AGTTTAAATTTAAATG
Found at i:91092 original size:22 final size:23
Alignment explanation
Indices: 91033--91096 Score: 69
Period size: 22 Copynumber: 2.9 Consensus size: 23
91023 TTAATTAGAC
* *
91033 CTTT-AATTTAAGTTTAGATGAG
1 CTTTAAATTTAAATTTAAATGAG
* * *
91055 CTTTTAGTTTAGATTTAAATGAG
1 CTTTAAATTTAAATTTAAATGAG
91078 -TTTAAATTTAAATTTAAAT
1 CTTTAAATTTAAATTTAAAT
91097 TTTATTAAAT
Statistics
Matches: 34, Mismatches: 7, Indels: 2
0.79 0.16 0.05
Matches are distributed among these distances:
22 20 0.59
23 14 0.41
ACGTcount: A:0.36, C:0.03, G:0.12, T:0.48
Consensus pattern (23 bp):
CTTTAAATTTAAATTTAAATGAG
Found at i:91142 original size:22 final size:22
Alignment explanation
Indices: 91078--91146 Score: 67
Period size: 22 Copynumber: 3.2 Consensus size: 22
91068 TTTAAATGAG
91078 TTTAAAT-TTAAATTTAAATT-T
1 TTTAAATATTAAATTT-AATTAT
*
91099 TATTAAATA-T--ATTTTATGTAT
1 T-TTAAATATTAAATTTAAT-TAT
91120 TTTAAATATTAAATTTAATTAT
1 TTTAAATATTAAATTTAATTAT
91142 TTTAA
1 TTTAA
91147 TTTATTCGAT
Statistics
Matches: 39, Mismatches: 2, Indels: 13
0.72 0.04 0.24
Matches are distributed among these distances:
19 2 0.05
20 12 0.31
21 4 0.10
22 15 0.38
23 6 0.15
ACGTcount: A:0.42, C:0.00, G:0.01, T:0.57
Consensus pattern (22 bp):
TTTAAATATTAAATTTAATTAT
Found at i:91261 original size:10 final size:10
Alignment explanation
Indices: 91246--91279 Score: 50
Period size: 10 Copynumber: 3.2 Consensus size: 10
91236 TAATAAATCG
91246 ATTTAATTAA
1 ATTTAATTAA
91256 ATTTAATTAA
1 ATTTAATTAA
91266 ATTTTTAATTAA
1 A--TTTAATTAA
91278 AT
1 AT
91280 CGAATATAAC
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
10 12 0.55
12 10 0.45
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (10 bp):
ATTTAATTAA
Found at i:91815 original size:18 final size:18
Alignment explanation
Indices: 91794--91857 Score: 51
Period size: 18 Copynumber: 3.3 Consensus size: 18
91784 TCTTTGTCCG
91794 ATTAATTGCAGTATTTTT
1 ATTAATTGCAGTATTTTT
*
91812 ATTAA-TG-ATTGTTATTTGTCCG
1 ATTAATTGCA--G-TATTT-T--T
91834 ATTAATTGCAGTATTTTT
1 ATTAATTGCAGTATTTTT
91852 ATTAAT
1 ATTAAT
91858 GATTGTTATT
Statistics
Matches: 36, Mismatches: 2, Indels: 16
0.67 0.04 0.30
Matches are distributed among these distances:
16 1 0.03
17 2 0.06
18 12 0.33
19 5 0.14
20 2 0.06
21 5 0.14
22 6 0.17
23 2 0.06
24 1 0.03
ACGTcount: A:0.28, C:0.06, G:0.12, T:0.53
Consensus pattern (18 bp):
ATTAATTGCAGTATTTTT
Found at i:91832 original size:40 final size:40
Alignment explanation
Indices: 91786--91867 Score: 164
Period size: 40 Copynumber: 2.0 Consensus size: 40
91776 TATAATTTTC
91786 TTTGTCCGATTAATTGCAGTATTTTTATTAATGATTGTTA
1 TTTGTCCGATTAATTGCAGTATTTTTATTAATGATTGTTA
91826 TTTGTCCGATTAATTGCAGTATTTTTATTAATGATTGTTA
1 TTTGTCCGATTAATTGCAGTATTTTTATTAATGATTGTTA
91866 TT
1 TT
91868 ACACTGGTTA
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 42 1.00
ACGTcount: A:0.24, C:0.07, G:0.15, T:0.54
Consensus pattern (40 bp):
TTTGTCCGATTAATTGCAGTATTTTTATTAATGATTGTTA
Found at i:91862 original size:21 final size:21
Alignment explanation
Indices: 91798--91862 Score: 53
Period size: 21 Copynumber: 3.2 Consensus size: 21
91788 TGTCCGATTA
91798 ATTGCAGTATTTTTATTAATG
1 ATTGCAGTATTTTTATTAATG
* * *** * *
91819 ATTG--TTATTTGTCCGATTA
1 ATTGCAGTATTTTTATTAATG
91838 ATTGCAGTATTTTTATTAATG
1 ATTGCAGTATTTTTATTAATG
91859 ATTG
1 ATTG
91863 TTATTACACT
Statistics
Matches: 28, Mismatches: 14, Indels: 4
0.61 0.30 0.09
Matches are distributed among these distances:
19 12 0.43
21 16 0.57
ACGTcount: A:0.26, C:0.06, G:0.15, T:0.52
Consensus pattern (21 bp):
ATTGCAGTATTTTTATTAATG
Found at i:91879 original size:40 final size:40
Alignment explanation
Indices: 91791--91880 Score: 135
Period size: 40 Copynumber: 2.2 Consensus size: 40
91781 TTTTCTTTGT
***
91791 CCGATTAATTGCAGTATTTTTATTAATGATTGTTATTTGT
1 CCGATTAATTGCAGTATTTTTATTAATGATTGTTATTACA
91831 CCGATTAATTGCAGTATTTTTATTAATGATTGTTATTACA
1 CCGATTAATTGCAGTATTTTTATTAATGATTGTTATTACA
* *
91871 CTGGTTAATT
1 CCGATTAATT
91881 TTAATCTGTG
Statistics
Matches: 45, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
40 45 1.00
ACGTcount: A:0.27, C:0.09, G:0.14, T:0.50
Consensus pattern (40 bp):
CCGATTAATTGCAGTATTTTTATTAATGATTGTTATTACA
Found at i:92631 original size:31 final size:31
Alignment explanation
Indices: 92603--92660 Score: 82
Period size: 30 Copynumber: 1.9 Consensus size: 31
92593 ACTTAAATTT
*
92603 TAATGTTTATATTA-TAATATTACATAAATG
1 TAATGTTTATATTATTAAAATTACATAAATG
* *
92633 TATTTTTTATATTATTAAAATTACATAA
1 TAATGTTTATATTATTAAAATTACATAA
92661 TATATAAAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
30 12 0.50
31 12 0.50
ACGTcount: A:0.43, C:0.03, G:0.03, T:0.50
Consensus pattern (31 bp):
TAATGTTTATATTATTAAAATTACATAAATG
Found at i:93378 original size:16 final size:17
Alignment explanation
Indices: 93339--93386 Score: 55
Period size: 16 Copynumber: 2.9 Consensus size: 17
93329 AATCGAATTT
*
93339 AATTTTTTATATTTATA
1 AATTTTTTAAATTTATA
*
93356 AA-ATTTTAAATTT-TA
1 AATTTTTTAAATTTATA
93371 AATTTTTTATAATTTA
1 AATTTTTTA-AATTTA
93387 ATTAAGTATA
Statistics
Matches: 25, Mismatches: 3, Indels: 5
0.76 0.09 0.15
Matches are distributed among these distances:
15 4 0.16
16 14 0.56
17 7 0.28
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (17 bp):
AATTTTTTAAATTTATA
Found at i:93387 original size:16 final size:16
Alignment explanation
Indices: 93334--93387 Score: 51
Period size: 16 Copynumber: 3.4 Consensus size: 16
93324 AAATTAATCG
93334 AATTT-AATTTTTTAT
1 AATTTAAATTTTTTAT
**
93349 -ATTTATAAAATTTTA-
1 AATTTA-AATTTTTTAT
93364 AATTTTAAATTTTTTAT
1 AA-TTTAAATTTTTTAT
93381 AATTTAA
1 AATTTAA
93388 TTAAGTATAA
Statistics
Matches: 30, Mismatches: 4, Indels: 9
0.70 0.09 0.21
Matches are distributed among these distances:
14 4 0.13
16 20 0.67
17 6 0.20
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (16 bp):
AATTTAAATTTTTTAT
Found at i:93456 original size:11 final size:11
Alignment explanation
Indices: 93440--93464 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
93430 GTTAATTAAA
93440 TTATGTATATT
1 TTATGTATATT
93451 TTATGTATATT
1 TTATGTATATT
93462 TTA
1 TTA
93465 AGTAATTAGG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.28, C:0.00, G:0.08, T:0.64
Consensus pattern (11 bp):
TTATGTATATT
Found at i:94370 original size:15 final size:15
Alignment explanation
Indices: 94332--94375 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
94322 CTAAAGACCT
94332 AATAAAGAAAAATTAA
1 AATAAA-AAAAATTAA
* *
94348 AATGAAAAATATTAA
1 AATAAAAAAAATTAA
*
94363 TATAAAAAAAATT
1 AATAAAAAAAATT
94376 TGTTGGACCA
Statistics
Matches: 23, Mismatches: 5, Indels: 1
0.79 0.17 0.03
Matches are distributed among these distances:
15 18 0.78
16 5 0.22
ACGTcount: A:0.70, C:0.00, G:0.05, T:0.25
Consensus pattern (15 bp):
AATAAAAAAAATTAA
Found at i:94719 original size:2 final size:2
Alignment explanation
Indices: 94714--94738 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
94704 TGTGTGTGTG
94714 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
94739 TGAATTTGTA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:96443 original size:28 final size:30
Alignment explanation
Indices: 96402--96465 Score: 87
Period size: 28 Copynumber: 2.2 Consensus size: 30
96392 TATTTAACCC
*
96402 AAAAAAAAGGGAAAAAGGTTGAAGTT-GGG
1 AAAAAAAAGGGAAAAAGATTGAAGTTGGGG
* *
96431 AAAAGAAA-GGAAAAATATTGAAGTTGGGG
1 AAAAAAAAGGGAAAAAGATTGAAGTTGGGG
96460 AAAAAA
1 AAAAAA
96466 TTTGTAATTT
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
28 15 0.50
29 15 0.50
ACGTcount: A:0.56, C:0.00, G:0.30, T:0.14
Consensus pattern (30 bp):
AAAAAAAAGGGAAAAAGATTGAAGTTGGGG
Found at i:104042 original size:39 final size:39
Alignment explanation
Indices: 103992--104069 Score: 156
Period size: 39 Copynumber: 2.0 Consensus size: 39
103982 AATTTAATCA
103992 CATGTCTAATTTATTGTACTAAAAAAAATTGTAGCACAT
1 CATGTCTAATTTATTGTACTAAAAAAAATTGTAGCACAT
104031 CATGTCTAATTTATTGTACTAAAAAAAATTGTAGCACAT
1 CATGTCTAATTTATTGTACTAAAAAAAATTGTAGCACAT
104070 TCTTCAATTA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 39 1.00
ACGTcount: A:0.41, C:0.13, G:0.10, T:0.36
Consensus pattern (39 bp):
CATGTCTAATTTATTGTACTAAAAAAAATTGTAGCACAT
Found at i:105717 original size:32 final size:33
Alignment explanation
Indices: 105676--105743 Score: 102
Period size: 33 Copynumber: 2.1 Consensus size: 33
105666 GTAGCTAAAC
** *
105676 TTGTATCGATACA-CATAGTATGTATTGATACA
1 TTGTATCGATACACCATAAAATGTATCGATACA
105708 TTGTATCGATACACCATAAAATGTATCGATACA
1 TTGTATCGATACACCATAAAATGTATCGATACA
105741 TTG
1 TTG
105744 GCTTGTAACG
Statistics
Matches: 32, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
32 13 0.41
33 19 0.59
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
Consensus pattern (33 bp):
TTGTATCGATACACCATAAAATGTATCGATACA
Found at i:109556 original size:31 final size:31
Alignment explanation
Indices: 109460--125708 Score: 4621
Period size: 32 Copynumber: 509.1 Consensus size: 31
109450 AGCCTAAACT
* *
109460 AGTTGGTCGCAACCTTTTCAATA-TCAACACG
1 AGTTGGTGGCAACCTTTTCAA-AGTCCACACG
** * * *
109491 AGTTTATGGTAACCTTTTTAAAGGCTCACACG
1 AGTTGGTGGCAACCTTTTCAAAGTC-CACACG
* *
109523 AGTTGGTGGCAACCATTTCAAAGTCAACACG
1 AGTTGGTGGCAACCTTTTCAAAGTCCACACG
* * * **
109554 AGTTGATAGCAACC-TTTCAAAAGTCCATAAA
1 AGTTGGTGGCAACCTTTTC-AAAGTCCACACG
* * *
109585 AGTTGGTGGTAAACTTTTCAAAGGCCCAAAAGCCTACACG
1 AGTTGGTGGCAACCTTTTCAAA-G-------TCC-ACACG
* *
109625 AGTTAGTGGCAACCATTTCAAAGTCCACACG
1 AGTTGGTGGCAACCTTTTCAAAGTCCACACG
** * *
109656 AGTTAATGGCAACTTTTTCAAAGTCCACATG
1 AGTTGGTGGCAACCTTTTCAAAGTCCACACG
* * * *
109687 AGTTGGGGGCAACCTTTTCCAAGCCCACACA
1 AGTTGGTGGCAACCTTTTCAAAGTCCACACG
* * * **
109718 AGTTAGTGGCAGCCATTTCAAAGTCCACGTG
1 AGTTGGTGGCAACCTTTTCAAAGTCCACACG
* * *
109749 AGTTGGTGGCAATCTTTTCAAAAGACCACACA
1 AGTTGGTGGCAACCTTTTC-AAAGTCCACACG
* * * *
109781 AGTTGTTGGCAGCCTTTTTAAAAGCCCACACG
1 AGTTGGTGGCAACC-TTTTCAAAGTCCACACG
* *
109813 AGTTGATGGCAACCTTTTCAAAGTCTACACG
1 AGTTGGTGGCAACCTTTTCAAAGTCCACACG
*
109844 AGTTGG-GGTAACCTTTTCAAA-TCCAACACG
1 AGTTGGTGGCAACCTTTTCAAAGTCC-ACACG
* * **
109874 AGTTTGTGGCAACCTTTTTAAAGTCCGTACG
1 AGTTGGTGGCAACCTTTTCAAAGTCCACACG
* * * *
109905 AGTAGGT-GCTAACCTTTTAAAAAG-CCTAAACT
1 AGTTGGTGGC-AACCTTTT-CAAAGTCC-ACACG
* *
109937 AGTTGGTGGTAACCTTTTCAATGTCCACACG
1 AGTTGGTGGCAACCTTTTCAAAGTCCACACG
* *
109968 AGTTGGTGGCAAACTTTTCAAAAG-CTCATACG
1 AGTTGGTGGCAACCTTTTC-AAAGTC-CACACG
* * *
110000 AGTTGGTGGTAACCTTTAT-AAAGGCTTACACG
1 AGTTGGTGGCAACCTTT-TCAAAGTC-CACACG
*
110032 AGTTGGTAGCAACCATTTT-AAAGTCCACACG
1 AGTTGGTGGCAACC-TTTTCAAAGTCCACACG
** * * * **
110063 AGTTAATAGCAGCC-TTTCAAAAGTCCATAAA
1 AGTTGGTGGCAACCTTTTC-AAAGTCCACACG
* * *
110094 AGTTGGTGTGTAA-CTATTTAAAAGCCCAAAAGCCTACATG
1 AGTTGGTG-GCAACCT-TTTCAAAGTCC---A--C-AC--G
* *
110134 AGTTGGTGGCAACCATTTCAAAGTCCACAAG
1 AGTTGGTGGCAACCTTTTCAAAGTCCACACG
* ** **
110165 AGTTGGTGGTAACCTTTTCAAAAGTCTGCAAA
1 AGTTGGTGGCAACCTTTTC-AAAGTCCACACG
* *
110197 AGTTAGTGGCAACCTTTTCAAAGTCCACATG
1 AGTTGGTGGCAACCTTTTCAAAGTCCACACG
* * * * *
110228 AGTTGGTGACAACCTTTTTAAAGCCCATACA
1 AGTTGGTGGCAACCTTTTCAAAGTCCACACG
* * *
110259 AGTTGTTGGCAACCTTTTCAAAAGGCCACACA
1 AGTTGGTGGCAACCTTTTC-AAAGTCCACACG
* **
110291 AGTTGGTGGCAACCTTTTCAAAAGTCTACAAA
1 AGTTGGTGGCAACCTTTTC-AAAGTCCACACG
* *
110323 AGTTAGTGGCAACCTTTTCAAAGTCTACACG
1 AGTTGGTGGCAACCTTTTCAAAGTCCACACG
* * * * * *
110354 AGTTGGTGACAACCTTTTTATAGTCTATACA
1 AGTTGGTGGCAACCTTTTCAAAGTCCACACG
** * *
110385 AGTTATTGGCAACCTTTTTAAAAG-CCTATACG
1 AGTTGGTGGCAACC-TTTTCAAAGTCC-ACACG
* * * * *
110417 AGTTAGTGGCAACATTTTCAAAATCCCATATG
1 AGTTGGTGGCAACCTTTTCAAAGT-CCACACG
* * *
110449 AGTTGGAGGCAACC-TTTCAAAATCCCACATG
1 AGTTGGTGGCAACCTTTTCAAAGT-CCACACG
* * * * *
110480 AGGTAGTAGCAATCTTTTCAAAAG-CCTACACA
1 AGTTGGTGGCAACCTTTTC-AAAGTCC-ACACG
* * * *
110512 AGTTGGTGGTAAGCTTTGCAAATGGT-CACAGG
1 AGTTGGTGGCAACCTTTTCAAA--GTCCACACG
* * *
110544 AATTGGTGGCAACCTTTTCCAAAGCCCAAACG
1 AGTTGGTGGCAACCTTTT-CAAAGTCCACACG
* * * * *
110576 AGTT-GTCGGCAACCTTGTAAAAG-CTGATAGG
1 AGTTGGT-GGCAACCTTTTCAAAGTC-CACACG
* * * *
110607 AGTTGGTGGGAACCTTTTCAAAAATCTACATG
1 AGTTGGTGGCAACCTTTTC-AAAGTCCACACG
* * *
110639 AGTTGGTAGCAACCTTTTCAAAAATTCACACG
1 AGTTGGTGGCAACCTTTTC-AAAGTCCACACG
* *
110671 AGTTGGTGGTAACTTTTTCAAAGTCCACACG
1 AGTTGGTGGCAACCTTTTCAAAGTCCACACG
* * *
110702 AGTTGATGGCAACC-TTTCAAAAGTCCATAAG
1 AGTTGGTGGCAACCTTTTC-AAAGTCCACACG
** * *
110733 AGTTTATGGCAGCCTTTTCAAAAGCCCAAAAGCCTACACG
1 AGTTGGTGGCAACCTTTTC-AAAG-------TCC-ACACG
* * * *
110773 AATTGGTGGCAACCATTTCAAAGTCTACATG
1 AGTTGGTGGCAACCTTTTCAAAGTCCACACG
** * *
110804 AGTTGGTGGCAACCTTTTCAAAAGTTTAGAAG
1 AGTTGGTGGCAACCTTTTC-AAAGTCCACACG
*** *
110836 AGTTGGTAATAACCTTTTCAAAAG-CTCACATG
1 AGTTGGTGGCAACCTTTTC-AAAGTC-CACACG
* * *
110868 AGTTGGTGACAACCTTTTTAAAGTCCACACA
1 AGTTGGTGGCAACCTTTTCAAAGTCCACACG
* * *
110899 AGTTGTTGGTAACCTTTTCAAA-TGCTCGCACG
1 AGTTGGTGGCAACCTTTTCAAAGT-C-CACACG
* * * *
110931 AGTTGTTGGCAACCCTTTCAAAATCCTACATG
1 AGTTGGTGGCAACCTTTTCAAAGTCC-ACACG
* * *
110963 AGTTGGTGGTAACTTTTTCAAAATCCCACACG
1 AGTTGGTGGCAACCTTTTCAAAGT-CCACACG
* * *
110995 AGTTGGTTGCAACCTTTTAAAAGGCCCACAC-
1 AGTTGGTGGCAACCTTTTCAAA-GTCCACACG
* * *
111026 AGTTAGTGGTAACCTTTTCAAAAATCCACACG
1 AGTTGGTGGCAACCTTTTC-AAAGTCCACACG
* * * *
111058 AGTTGGAGTCAACCTTTTTAAAAG-CTCACAAG
1 AGTTGGTGGCAACC-TTTTCAAAGTC-CACACG
* * **
111090 AGTTGGTGGCAACCTTTTCAAATTTCACATA
1 AGTTGGTGGCAACCTTTTCAAAGTCCACACG
** ** *
111121 AGTTTTTGGC-ACCATAGTCAAAGTCTA-AC-
1 AGTTGGTGGCAACC-TTTTCAAAGTCCACACG
* ** * * ** **
111150 ATTTTCAGACGCTCACACATCTTGGTAGCAACCTTTCCAAAGTCTATAT
1 A-GTT--G--G-TGGCA-ACCTT--T-TCAA--AGTCCA----C-A-CG
** * * *
111199 AGCTTGGTGGC-ACTACAGTT-GAAGTCCACTCA
1 AG-TTGGTGGCAAC--CTTTTCAAAGTCCACACG
* ** * *
111231 AGTTGGTGGTAATATTTTCGAAAGCCCACATG
1 AGTTGGTGGCAACCTTTTC-AAAGTCCACACG
* *
111263 AGTTGTTGGCAACCTTTTCAAAAGCCCACACG
1 AGTTGGTGGCAACCTTTTC-AAAGTCCACACG
* *
111295 AGTTGGTGGCAGCCTTTTTAAAAG-CCTACACG
1 AGTTGGTGGCAACC-TTTTCAAAGTCC-ACACG
* ** * * * *
111327 AGTTGATGATAACATTTTTAAAAGCCCACACC
1 AGTTGGTGGCAAC-CTTTTCAAAGTCCACACG
* * * *
111359 AGTTGATGGTAACCTTTTCAATGTCCACATG
1 AGTTGGTGGCAACCTTTTCAAAGTCCACACG
** *
111390 AGTTGGTGGCAACCTTTTCAAAGAACACACA
1 AGTTGGTGGCAACCTTTTCAAAGTCCACACG
* * *
111421 AGTTAGTGGCAACCATTTCAAAGTCCACATG
1 AGTTGGTGGCAACCTTTTCAAAGTCCACACG
* ** *
111452 AGTTGGTGGCAATCTTTTCAAAAG-CTTGCACT
1 AGTTGGTGGCAACCTTTTC-AAAGTC-CACACG
* * * *
111484 AGTTGTTGGCAGCTTTTTTAAAAG-CTCACACG
1 AGTTGGTGGCAAC-CTTTTCAAAGTC-CACACG
* * *
111516 GGTTGATGGCAACCTTTTCAAAGTCCACATG
1 AGTTGGTGGCAACCTTTTCAAAGTCCACACG
*
111547 AGTTGG-GGCAACCTTTTCAAAGCCCACACG
1 AGTTGGTGGCAACCTTTTCAAAGTCCACACG
* *
111577 AGTTAGTGGTAACCTTTTCAAAGTCCACACG
1 AGTTGGTGGCAACCTTTTCAAAGTCCACACG
* * * * * *
111608 AGTTGGTGGTAACATTTTAAGAAGCCCAAACT
1 AGTTGGTGGCAACCTTTTCA-AAGTCCACACG
* *
111640 AGTTGGTGGCAACCATTTCAATGTCCACACG
1 AGTTGGTGGCAACCTTTTCAAAGTCCACACG
111671 AGTTGGTGGCAACCTTTTCAAAAG-CTCACACG
1 AGTTGGTGGCAACCTTTTC-AAAGTC-CACACG
* * * * * *
111703 ATTTGGTGGTAAACTTTTTAAAGGCTTACACG
1 AGTTGGTGGCAACCTTTTCAAAGTC-CACACG
* * *
111735 AGTTGGTGGAAACCATTTCAAAATCCACACG
1 AGTTGGTGGCAACCTTTTCAAAGTCCACACG
* * * * *
111766 AGTTGATAGAAACCTTTT-AGAAGTCCATAAG
1 AGTTGGTGGCAACCTTTTCA-AAGTCCACACG
* *
111797 AGTTGGTGGCAAACTTTTCAAAAGCCCAAAAGCCCACACG
1 AGTTGGTGGCAACCTTTT--------C-AAAGTCCACACG
*
111837 AGTTGGTGGCAACCATTTCAAAGTCCACACG
1 AGTTGGTGGCAACCTTTTCAAAGTCCACACG
** * *
111868 AGTTGGTGTTAACCTTTTCAAAAGTCTACA-A
1 AGTTGGTGGCAACCTTTTC-AAAGTCCACACG
* * *
111899 ATATTCGTGGCAACCTTTTCAAAGTCCACACA
1 A-GTTGGTGGCAACCTTTTCAAAGTCCACACG
* * * *
111931 AGTTGATGACAACCTTTTCAAAGTCCATACA
1 AGTTGGTGGCAACCTTTTCAAAGTCCACACG
* * *
111962 AGTTGTTGGCAACCTTTTCAAAATGCCATACG
1 AGTTGGTGGCAACCTTTTCAAAGT-CCACACG
* * * * *
111994 AGTTGGTGGTAACTTTTTCAAAATCTTACATG
1 AGTTGGTGGCAACCTTTTCAAAGTC-CACACG
* * * *
112026 AGTTGGTAGCAAACTTTTCAAAATCCCACAAG
1 AGTTGGTGGCAACCTTTTCAAAGT-CCACACG
* * *
112058 AGTTGGTAGG-AACATTTTCAAAAGTCTATGA-G
1 AGTTGGT-GGCAACCTTTTC-AAAGTCCA-CACG
** * *
112090 AGTTGGTCACAACCTTTTCAAAAGCCCATACG
1 AGTTGGTGGCAACCTTTTC-AAAGTCCACACG
** * *
112122 AGTTGGTGATAACTTTTTCAAAGTCCACACA
1 AGTTGGTGGCAACCTTTTCAAAGTCCACACG
* * * *
112153 AATTGTTGGCAACCTTTTCAAAAG-CTAACACA
1 AGTTGGTGGCAACCTTTTC-AAAGTC-CACACG
* ** *
112185 AGTTGGTGGCAACCTTTTCAAAATCTTGCATG
1 AGTTGGTGGCAACCTTTTCAAAGTC-CACACG
* *
112217 AGTTGGTGGTAACC-TTTCAAAATCCCACACG
1 AGTTGGTGGCAACCTTTTCAAAGT-CCACACG
* *
112248 AGTTGGTAGCAACCTTTTCAAAAG-CCTATA-G
1 AGTTGGTGGCAACCTTTTC-AAAGTCC-ACACG
* * * * *
112279 AAGTTGG-CGCTAAGCTTTGCAAATGGCCATACG
1 -AGTTGGTGGC-AACCTTTTCAAA-GTCCACACG
* *
112312 AGTTGGTGGCAACCTTTTCAAAAATCTACACG
1 AGTTGGTGGCAACCTTTTC-AAAGTCCACACG
** ** *
112344 AGTTAATGGCAACAATTTCAAAGTTCACACG
1 AGTTGGTGGCAACCTTTTCAAAGTCCACACG
* * *
112375 AGTTGATTGCAACC-TTTCAAAAGTCCACAAG
1 AGTTGGTGGCAACCTTTTC-AAAGTCCACACG
* * * *
112406 AATTGGTGGCAAGCTTTTAAAAAGCCCAATAGCTCACATG
1 AGTTGGTGGCAACCTTTT-CAAAG-----T--C-CACACG
* * *
112446 AATTTGTGGCAACCATTTCAAAGTCCACACG
1 AGTTGGTGGCAACCTTTTCAAAGTCCACACG
* * *
112477 AGTTGGTGGCAACATTTTCAAAAGTCTACAAG
1 AGTTGGTGGCAACCTTTTC-AAAGTCCACACG
* *
112509 AGTTGGTGGCAACCATTTTAAAAG-CTCACAGG
1 AGTTGGTGGCAACC-TTTTCAAAGTC-CACACG
* * *
112541 AGTTGGTGACAACCTTTTCAAAGTCCATACA
1 AGTTGGTGGCAACCTTTTCAAAGTCCACACG
* * *
112572 AGTTGTTGGCAACCTTTTTAAAGTCCACACA
1 AGTTGGTGGCAACCTTTTCAAAGTCCACACG
* * * * *
112603 AGTTGTTGACAACCCTTTCAAAATCTCACATG
1 AGTTGGTGGCAACCTTTTCAAAGTC-CACACG
* * *
112635 AGTTGGTGGCAACTTTTTTAAAATCCCACACG
1 AGTTGGTGGCAACCTTTTCAAAGT-CCACACG
* * *
112667 AATTGGTAGCAACCTTTTCAAAGGCCCACACG
1 AGTTGGTGGCAACCTTTTCAAA-GTCCACACG
* * *
112699 AGTTGGTGGTAACTTTTTCAAAAATCCACACG
1 AGTTGGTGGCAACCTTTTC-AAAGTCCACACG
* * * * *
112731 AGTTGGTGGCATCCTTTTTAAAAGCCCAGATG
1 AGTTGGTGGCAACC-TTTTCAAAGTCCACACG
* **
112763 AGTTGGTGGCAACCTTTTTCAAATTTTACACG
1 AGTTGGTGGCAACC-TTTTCAAAGTCCACACG
* * * *
112795 AGTTTGTGGTAACATTTTCGAAAGCCCACACG
1 AGTTGGTGGCAACCTTTTC-AAAGTCCACACG
** * * *
112827 AGTTATTGGTAACATTTTCAAAAG-CCACATG
1 AGTTGGTGGCAACCTTTTC-AAAGTCCACACG
* * * *
112858 AGATGGTAGCAACCTTTTTAAAAG-CACACATG
1 AGTTGGTGGCAACC-TTTTCAAAGTC-CACACG
* * *
112890 AGTTGATGGCAACCTTTTAAAAGTCCACATG
1 AGTTGGTGGCAACCTTTTCAAAGTCCACACG
* * *
112921 AGTTGGTGGCAACCTTTTCAAAGCCCATACA
1 AGTTGGTGGCAACCTTTTCAAAGTCCACACG
* * * * **
112952 AGTTAGTGGAAACCATTTCAAAGTCCGCATA
1 AGTTGGTGGCAACCTTTTCAAAGTCCACACG
** ** *
112983 AGTTGGTGGCAATTTTTTCAAAAG-CCTGTACT
1 AGTTGGTGGCAACCTTTTC-AAAGTCC-ACACG
* * * * *
113015 AGTTGTTGGCAGCCTTTTTAAATGCCCACAAG
1 AGTTGGTGGCAACCTTTTCAAA-GTCCACACG
* ** *
113047 GGTTGAAGGCAACCTTTTCAAAGTCCACACA
1 AGTTGGTGGCAACCTTTTCAAAGTCCACACG
* * *
113078 AGTTGGGGGTAACCTTTTCAAAGCCCACACG
1 AGTTGGTGGCAACCTTTTCAAAGTCCACACG
* * * **
113109 AGTTGGTGGCAACCTTTTAAAAAGCCCAAAAT
1 AGTTGGTGGCAACCTTTT-CAAAGTCCACACG
* * *
113141 TGTTAGG-GACAA-CTATTTCAAAGTCCACACA
1 AGTT-GGTGGCAACCT-TTTCAAAGTCCACACG
* * * * *
113172 AGTTGATAGCAACCCTTTAAAAGTCCACAAG
1 AGTTGGTGGCAACCTTTTCAAAGTCCACACG
* *
113203 AGTTGGTGGCAAACTTTTCAAAAGCCTAAAAGCTCACATG
1 AGTTGGTGGCAACCTTTTC-AAAG--T-----C-CACACG
* * * *
113243 AATTGGTGGTAACCATTTCAAAGTTCACACG
1 AGTTGGTGGCAACCTTTTCAAAGTCCACACG
* * * * * **
113274 AATTGGCGGTAACTTTTTCAAAAGTCTACAAA
1 AGTTGGTGGCAACCTTTTC-AAAGTCCACACG
**
113306 AGTTCATGGCAACCTTTTCAAAGTCCACACG
1 AGTTGGTGGCAACCTTTTCAAAGTCCACACG
* * *
113337 AGTTGCTGGCAACCTTTTCAAAGTCCATACA
1 AGTTGGTGGCAACCTTTTCAAAGTCCACACG
* *
113368 AGTTGTTGGCAACCTTTTCAAAAGGCCACACG
1 AGTTGGTGGCAACCTTTTC-AAAGTCCACACG
* *
113400 AGTTGGTGGTAACCTTTTC-AAGATCTCACATG
1 AGTTGGTGGCAACCTTTTCAAAG-TC-CACACG
* * * *
113432 AGTTGGTAGCAAACTTTTCAAAATCCCACATG
1 AGTTGGTGGCAACCTTTTCAAAGT-CCACACG
* * * * * *
113464 AGTTGATAGAAAACTTTTCAAAATCCACACA
1 AGTTGGTGGCAACCTTTTCAAAGTCCACACG
* *
113495 ATTTGTTGGCAACCTTTTCAAAGTCCA-AC-
1 AGTTGGTGGCAACCTTTTCAAAGTCCACACG
* ** ** * * *
113524 A-TT--T-TCAGAAGTTCACATGAGTTGGTGGCA-ACC
1 AGTTGGTGGCA-ACCTTTTCA--A---AGT-CCACACG
** *** * * * * * * *
113557 TTTTCAAAGTCCACATGAGTT-GATG-GCA-ACG
1 AGTT-GGTGGCAACCT--TTTCAAAGTCCACACG
** *** * ** * **
113588 TTTTCAAAAGCCCACACGATTT---GGT-GGCA-G
1 AGTT--GGTG-GCA-ACCTTTTCAAAGTCCACACG
** * *** ** * ** * *
113618 CCTT-TTTTAAAGCC--CACATGAGTTGATGACA
1 AGTTGGTGGCAA-CCTTTTCA-AAGTCCA-CACG
* ** ** ** * **** *
113649 ACCTT--T-TTAAAGTTCACACGAGTTGGTGACA
1 A-GTTGGTGGCAACCTTTTCA-AAG-TCCACACG
* * *** *
113680 ACCTT-TTTAAAAGCC----CAAAAGCCCACACG
1 A-GTTGGTGGCAA-CCTTTTC-AAAGTCCACACG
* * *
113709 AGTTGGTAGCAAGCTTTTCAAAAG-CCTACATG
1 AGTTGGTGGCAACCTTTTC-AAAGTCC-ACACG
* *** * *
113741 AGTTAGTAATAACATTTTCAAAGTCAACAC-
1 AGTTGGTGGCAACCTTTTCAAAGTCCACACG
* *
113771 ACGTTGTTGGCAACCTTTTCAAAAGCCCACACG
1 A-GTTGGTGGCAACCTTTTC-AAAGTCCACACG
* * * *
113804 AGTTGGTGGTAACATTTTGAAAATCGCACACG
1 AGTTGGTGGCAACCTTTTCAAAGTC-CACACG
* ** *
113836 AGTTGGTTGCAACCTTTTCAAAAACC-CATAG
1 AGTTGGTGGCAACCTTTTCAAAGTCCACA-CG
* * *
113867 AGTTGGTGACAACCTCTTCAAAGTCCACACA
1 AGTTGGTGGCAACCTTTTCAAAGTCCACACG
* * * * *
113898 AGTTGTTAGAAACCTTTTCAAAAG-CTTACACA
1 AGTTGGTGGCAACCTTTTC-AAAGTC-CACACG
* * *
113930 AGTTGGTGGCAACCTTTTTAAAATCTCACTCG
1 AGTTGGTGGCAACCTTTTCAAAGTC-CACACG
* * * *
113962 AGTTGGTGGC-GCTCTTTTCAAAATCTAACATG
1 AGTTGGTGGCAAC-CTTTTCAAAGTC-CACACG
* *
113994 AGTTGGTAGCAACCTTTTCAAAGGCCCACACG
1 AGTTGGTGGCAACCTTTTCAAA-GTCCACACG
* * * *
114026 AGTTGGTGGTAACCATTTCAAAAGCCCACATG
1 AGTTGGTGGCAACCTTTTC-AAAGTCCACACG
* *
114058 AGTTGGTGGCAACCTTTGCAAAAGTCCACAGG
1 AGTTGGTGGCAACCTTTTC-AAAGTCCACACG
* * * *
114090 AGTTGGTGGCAACATTTCCAAGAGCCCACAGG
1 AGTTGGTGGCAACCTTTTCAA-AGTCCACACG
* * *
114122 AGTTGGTGGCAACCTTTACAAAGTTCACCCG
1 AGTTGGTGGCAACCTTTTCAAAGTCCACACG
* * **
114153 AGTTTGTGGCACCCTAGTCAAAGTCCACACG
1 AGTTGGTGGCAACCTTTTCAAAGTCCACACG
*
114184 AGTTGGTGGCAACCTTTTCAAAAATCCACACG
1 AGTTGGTGGCAACCTTTTC-AAAGTCCACACG
* * *
114216 AGTTGGTGGTAA-CTATTTCATAGTCTACACG
1 AGTTGGTGGCAACCT-TTTCAAAGTCCACACG
** * ** *
114247 AGTTCATGCCAA-CAGTTCAAAAGTCCACAGG
1 AGTTGGTGGCAACCTTTTC-AAAGTCCACACG
* *
114278 AGTTGGTGGCAACTTTTTCAAAAGCCCAAAAGCCCTTACG
1 AGTTGGTGGCAACCTTTTC-AAAGTCC---A---C--ACG
* *
114318 AATTGGTGGCAACCATTTCAAAGTCCACACG
1 AGTTGGTGGCAACCTTTTCAAAGTCCACACG
* * *
114349 AGTTGGTGGCAACCTTTTCAAAGGTCTAGAAG
1 AGTTGGTGGCAACCTTTTCAAA-GTCCACACG
* *
114381 AATTGGTGGCAACCTTTTCAAAAG-CCTAGACG
1 AGTTGGTGGCAACCTTTTC-AAAGTCC-ACACG
* *
114413 AGTTGGTGACAACCTTTTCAAAGTCCACACA
1 AGTTGGTGGCAACCTTTTCAAAGTCCACACG
* * *
114444 AGTTGTTAGCAACCTTTTCAAAATCCCACACG
1 AGTTGGTGGCAACCTTTTCAAAGT-CCACACG
* *
114476 AGTTGGTGGTAACCTTTTCAAAATCACACACG
1 AGTTGGTGGCAACCTTTTCAAAGTC-CACACG
* * *
114508 AGTTGGTAGCAACCTTTGTCAAA-ACCATA-G
1 AGTTGGTGGCAACCTTT-TCAAAGTCCACACG
* * * * *
114538 AGTTGGTGACAAACTTTTCAAACTCTACACA
1 AGTTGGTGGCAACCTTTTCAAAGTCCACACG
* * *
114569 AGTTGTTAG-AAGCTTTTTCAAAAGTCCACACG
1 AGTTGGTGGCAA-CCTTTTC-AAAGTCCACACG
* * * * *
114601 AGTTAGTGACAACCTTTCCAACGTCCACACA
1 AGTTGGTGGCAACCTTTTCAAAGTCCACACG
* * * * *
114632 AGTTGGTGGCAGCTTTTTTAAAAGCCCACACA
1 AGTTGGTGGCAAC-CTTTTCAAAGTCCACACG
* * *
114664 AGTTGGTGGCAA-CTTGTCCAAAATCCCACTCG
1 AGTTGGTGGCAACCTT-TTCAAAGT-CCACACG
* * * * *
114696 ATTTGGTCGTAACCTTTTCAAAATCTGACACG
1 AGTTGGTGGCAACCTTTTCAAAGTC-CACACG
* ** *
114728 AGTAGGTAACAACC-TTTCAAAGACCCACACG
1 AGTTGGTGGCAACCTTTTCAAAG-TCCACACG
* * *
114759 AGTTGGTGGTAACCATTTCAAAAG-CTCACATG
1 AGTTGGTGGCAACCTTTTC-AAAGTC-CACACG
* *
114791 AGTTGGTGGCAACCTTTGCAAAAGGCCACACG
1 AGTTGGTGGCAACCTTTTC-AAAGTCCACACG
* * *
114823 AGTTGGTGACAACCTTTTCAAGAG-CTCATAGG
1 AGTTGGTGGCAACCTTTTCAA-AGTC-CACACG
* * * *
114855 AGTCGGTGACAACCTTTTCAAAAATCCACACA
1 AGTTGGTGGCAACCTTTTC-AAAGTCCACACG
* * * * *
114887 AGTTAGTTGTAA-C-TATAAAAGTCCACACG
1 AGTTGGTGGCAACCTTTTCAAAGTCCACACG
** * * *
114916 AGTTAATGCCAACCTTTTAAAAGTCCACAAG
1 AGTTGGTGGCAACCTTTTCAAAGTCCACACG
*
114947 AGTTGGTGGCAACCTTTTCAAAAGCCCAAAAGCCCACACG
1 AGTTGGTGGCAACCTTTT--------C-AAAGTCCACACG
* * * * * *
114987 AATTAGTGACAACCATTTCAAAGTCCATATG
1 AGTTGGTGGCAACCTTTTCAAAGTCCACACG
* * * * *
115018 GGTTGGTGACAACCTTTTCAAAAGTCTAGAAG
1 AGTTGGTGGCAACCTTTTC-AAAGTCCACACG
*
115050 AGTTGGTGGCAA-CTATTTCAAAATCCTACACG
1 AGTTGGTGGCAACCT-TTTCAAAGTCC-ACACG
* * * *
115082 AGTTGGTAGCAACCTTTTCAAAGGCCCATATG
1 AGTTGGTGGCAACCTTTTCAAA-GTCCACACG
* * *
115114 AGTTGGTGGTAACCTTTTCAAAATCCCACATG
1 AGTTGGTGGCAACCTTTTCAAAGT-CCACACG
* * *
115146 AGTTGGTGGAAAACTTTTCAAAATCACACACG
1 AGTTGGTGGCAACCTTTTCAAAGTC-CACACG
* *
115178 AGTTGGTGGCAACCTTTTCAAAATCCACACA
1 AGTTGGTGGCAACCTTTTCAAAGTCCACACG
** *
115209 AGTTTTTGGCAACCTTTTCCAAAG-CTCACGCG
1 AGTTGGTGGCAACCTTTT-CAAAGTC-CACACG
* *
115241 AGTTGGTAGCAACCTTTTCAAAGGTCCACATG
1 AGTTGGTGGCAACCTTTTCAAA-GTCCACACG
* *
115273 AGTTGGTGGGAACCTTTTCAAAAGTCCACACT
1 AGTTGGTGGCAACCTTTTC-AAAGTCCACACG
* * * * **
115305 AGTGGGTAGCAACCTTTCCAAAGCCCACAAA
1 AGTTGGTGGCAACCTTTTCAAAGTCCACACG
* *
115336 AGTTGTTGGCAACCTTTTCAAAAG-CCACATG
1 AGTTGGTGGCAACCTTTTC-AAAGTCCACACG
* * * *
115367 AGTT-GTGACATCC-TTTCAAAATCCTACATG
1 AGTTGGTGGCAACCTTTTCAAAGTCC-ACACG
* *
115397 AGTTGGTAGCAACCTTTTCAAAAG-CCTGCACG
1 AGTTGGTGGCAACCTTTTC-AAAGTCC-ACACG
** * * * *
115429 AGTTGGTGTTAAGCTTTGCAAATGGCCACACA
1 AGTTGGTGGCAACCTTTTCAAA-GTCCACACG
* * * *
115461 AGTTGGTGGCAACTTTTTCAAAGCCCAAATG
1 AGTTGGTGGCAACCTTTTCAAAGTCCACACG
* * * *
115492 AGTTGTTGGTAACCTTTTCAAAAG-CTGACAGG
1 AGTTGGTGGCAACCTTTTC-AAAGTC-CACACG
* *
115524 AGTTGGTGGCAACCTTTTCAAAAATCTACACG
1 AGTTGGTGGCAACCTTTTC-AAAGTCCACACG
* * * * *
115556 AGTTGGTAGCAACTTTTTCAAAAATTCACATG
1 AGTTGGTGGCAACCTTTTC-AAAGTCCACACG
* *
115588 TGTTGGTGGCAA-CTATTTTAAAGTCCACACG
1 AGTTGGTGGCAACCT-TTTCAAAGTCCACACG
* * * * * ** **
115619 TGTTGCTAGAAACC-TTTCAAAAATCCGTAAA
1 AGTTGGTGGCAACCTTTTC-AAAGTCCACACG
* *
115650 AGTTGCTGGCAACCATTTTAATAGCCCAAAAGTCCACACA
1 AGTTGGTGGCAACC--TTT--T----C-AAAGTCCACACG
* * * * *
115690 AATTGGTAGCAACCATTTCAAAGCCCACATG
1 AGTTGGTGGCAACCTTTTCAAAGTCCACACG
* * * **
115721 AGTTGGTGGTAACTTTTTCAAAAGTCTACAAT
1 AGTTGGTGGCAACCTTTTC-AAAGTCCACACG
* *
115753 AGTTGGTGGCAAACTTTTCAAAAGTCCACATG
1 AGTTGGTGGCAACCTTTTC-AAAGTCCACACG
* ** *
115785 AGTTAGCAGCAACC-TTT---AG-CTCACACT
1 AGTTGGTGGCAACCTTTTCAAAGTC-CACACG
* * * * **
115812 AGTTAGCGGTAA-CTTTTGGAGAAACCCACACG
1 AGTTGGTGGCAACCTTTT-CA-AAGTCCACACG
* * * *
115844 AGTTGGTGGTAACCTTTTTAAAAGCCCACAGG
1 AGTTGGTGGCAACC-TTTTCAAAGTCCACACG
* ** *
115876 AGTTAGTGGTTACCTTTTCAAAGTTCACACG
1 AGTTGGTGGCAACCTTTTCAAAGTCCACACG
** * *
115907 AGGTT-GTGGC-ACCATAGTCAAAGTCTATACG
1 A-GTTGGTGGCAACC-TTTTCAAAGTCCACACG
* * * *
115938 AGTTGGTAGTAACTTTTTCAAAAG-CCTACACT
1 AGTTGGTGGCAACCTTTTC-AAAGTCC-ACACG
* * * *
115970 TGTTGGTAGTAACCTTTTCAAAAGCCCACACG
1 AGTTGGTGGCAACCTTTTC-AAAGTCCACACG
*
116002 AGTTGGTGGCAACCATTTCAAAGTCCACACG
1 AGTTGGTGGCAACCTTTTCAAAGTCCACACG
* * *
116033 AGTTGATGGCAACC-TTTCAAAAGTCTACAAG
1 AGTTGGTGGCAACCTTTTC-AAAGTCCACACG
* * *
116064 AGTTGGTGGCAACTTTTTTAAAAGCCCAAAAGCCCACAAG
1 AGTTGGTGGCAAC-CTTTT-------C-AAAGTCCACACG
* ** *
116104 ATTTGGAAGCAA-CTATTTCAATGTCCACACG
1 AGTTGGTGGCAACCT-TTTCAAAGTCCACACG
* * * *
116135 AGTTGGTGGTAACCTTTTGAAAAGTCTACAAG
1 AGTTGGTGGCAACCTTTT-CAAAGTCCACACG
* * *
116167 AGCTAGG-GGCAACTTTTTCAAAAGCCCACACG
1 AG-TTGGTGGCAACCTTTTC-AAAGTCCACACG
** * *
116199 AGTTGGTAACAACCTCTTT-AAAGTCTACACA
1 AGTTGGTGGCAACCT-TTTCAAAGTCCACACG
* * *
116230 AGTTGTTGGCAACCTTTTTTTAAAAAGCCCACACG
1 AGTTGGTGGCAACC---TTTT-CAAAGTCCACACG
* ** * *
116265 AGTTAGTAACAACCTTTTCAAAGTCAACA-T
1 AGTTGGTGGCAACCTTTTCAAAGTCCACACG
* * * *
116295 ATGTTGTTAGCAACCTTTTCAAAAGCCCACATG
1 A-GTTGGTGGCAACCTTTTC-AAAGTCCACACG
* * * * *
116328 AGTTGGTAGTAACTTTTTCAAAATCACACATG
1 AGTTGGTGGCAACCTTTTCAAAGTC-CACACG
* ***
116360 AGTTGGTAGCAACCTTTTCAAAAAGCACA-G
1 AGTTGGTGGCAACCTTTTCAAAGTCCACACG
* * * * *
116390 AGTTGGTGACAACCTTTCCAAAATCCTACTCA
1 AGTTGGTGGCAACCTTTTCAAAGTCC-ACACG
* * * ** *
116422 AGTTGGTCGCAACATTTTCAAAATTTGACATG
1 AGTTGGTGGCAACCTTTTC-AAAGTCCACACG
* * *
116454 AGTTGGTAGCAACC-TTTCAAAGGCCCACACA
1 AGTTGGTGGCAACCTTTTCAAA-GTCCACACG
* * *
116485 AGTTGGTGGTAACCATTTCAAAAGCCCACACG
1 AGTTGGTGGCAACCTTTTC-AAAGTCCACACG
* * * * *
116517 AGTTAGTGGTAACCATTTCAAAAGCCCACATG
1 AGTTGGTGGCAACCTTTTC-AAAGTCCACACG
* * *
116549 GGTTGGTGGCAACCTTTT-AAAGAGCTCACAAG
1 AGTTGGTGGCAACCTTTTCAAAG-TC-CACACG
* *
116581 AGTTGGTGGCAACCTTTTCAAGAG-CTCATAGG
1 AGTTGGTGGCAACCTTTTCAA-AGTC-CACACG
* *
116613 AGTTGGTGGCAACCTTTTCAAAAATCCACATG
1 AGTTGGTGGCAACCTTTTC-AAAGTCCACACG
* * * * *
116645 TGTTAGTGGTAA-CTATTTCAAAGTCTACACT
1 AGTTGGTGGCAACCT-TTTCAAAGTCCACACG
** * **
116676 AGTTAAT-GCTAACC-TTTCAAAAGTCCATAAT
1 AGTTGGTGGC-AACCTTTTC-AAAGTCCACACG
*
116707 AGTTGGTGGTAACCTTTTCAAAAG-CCTACGA-G
1 AGTTGGTGGCAACCTTTTC-AAAGTCC-AC-ACG
* * *
116739 AGTTGGTCGTAACCTTTTCAAAAG-CC-TAC-
1 AGTTGGTGGCAACCTTTTC-AAAGTCCACACG
*** * * * * *** *
116768 --TTAAAGTCCACATAAGTT-GTTG-GCA-AC-
1 AGTTGGTGGCAACCT--TTTCAAAGTCCACACG
* * *** * ** *****
116795 -CTT-TTCAAAAAC-TCACATAAGT-TGGTGG
1 AGTTGGTGGCAACCTTTTCA-AAGTCCACACG
***** ** ** ** ** * *
116823 AAACCTTTTCAA-AATCCCACATGAGTTGATAGCA
1 AGTTGGTGGCAACCTTTTCA-A--AGTCCACA-CG
* *** * *
116857 ACCCTT--T--CAA-AAGTTCACACGAGTTGCTGACAACC
1 A--GTTGGTGGCAACCTTTTCA-A--AG-T-C-CAC-ACG
** * ** ** ***
116892 CTTTCAAAGTCCACATAAGTTGTTTGCAATA-TTTTCA-G
1 AGTT---GGT-GGC--AACCT-TTT-CAA-AGTCCACACG
* * *** ****
116930 A--TGCCT-AC-ACAAGTTGGTGGT--A-ATC-
1 AGTTG-GTGGCAACCTTTTCAAAGTCCACA-CG
** ** * *** *** * * *
116955 TTTTCAATGCCTACACGAGTT-GTTGGCAAC-CT
1 AGTT-GGTGGC-A-ACCTTTTCAAAGTCCACACG
** ** ** *** **** * *
116987 TTTTAAAATCTCACACGAGTTGGTGGT-AAC-CT
1 AGTT--GGTGGCA-ACCTTTTCAAAGTCCACACG
** * * * ** *** *
117019 TTTTAAAAGCTCGCATGA-GTTAGTGGT-AACCTTTTC-CA
1 AGTT----GGTGGCA--ACCTT--T--TCAAAGTCCACACG
** * *
117057 AGTTCACACGAGTTTGTGGC-ACCATAGTCAAAGTCTACACA
1 AGTT-------G---GTGGCAACC-TTTTCAAAGTCCACACG
* * * * *
117098 AGTTGGTAGTAACTTTTTTAAAAG-CCTACA-T
1 AGTTGGTGGCAAC-CTTTTCAAAGTCC-ACACG
* * *
117129 ATGCTGCTGGTAACCTTTTCAAAAG-CCACACG
1 A-GTTGGTGGCAACCTTTTC-AAAGTCCACACG
* *
117161 AGTTGGTGACAACCATTTCAAAGTCCACACG
1 AGTTGGTGGCAACCTTTTCAAAGTCCACACG
* * *
117192 AGTTGATGGCAACC-TTTCAAAAGTCTACAAG
1 AGTTGGTGGCAACCTTTTC-AAAGTCCACACG
* *
117223 AGTTTGTGGCAACCTTTTCAAAAGCCCAAAAGCCCACAAG
1 AGTTGGTGGCAACCTTTTC-AAAGTCC---A---CAC--G
** * * *
117263 AGTTGGAAGCAA-CTATTTTAATGTCCATACG
1 AGTTGGTGGCAACCT-TTTCAAAGTCCACACG
* * *
117294 AGTTGGTGGCAACCTTTTGAAAAGTCTACAAG
1 AGTTGGTGGCAACCTTTT-CAAAGTCCACACG
* * * *
117326 AGTTAGG-GTCCATCTTTTCAAAAGCCCACACG
1 AGTT-GGTGGCAACCTTTTC-AAAGTCCACACG
** * *
117358 AGTTGGTAACAACCTTTTCAAAGTCTACACA
1 AGTTGGTGGCAACCTTTTCAAAGTCCACACG
* * * *
117389 AGTTGTTGGCAACCTTTTTTTAAAAAGCCCACATG
1 AGTTGGTGGCAACC---TTTT-CAAAGTCCACACG
* *** * **
117424 AGTTAGTAATAACCTTTTCAAAGTCAACATA
1 AGTTGGTGGCAACCTTTTCAAAGTCCACACG
* * *
117455 AGTTGTTAGCAACCTTTTCAAAAGTCCACATG
1 AGTTGGTGGCAACCTTTTC-AAAGTCCACACG
* * *
117487 AGTTGGTAGTAACCTTTTCAAAATCACACACG
1 AGTTGGTGGCAACCTTTTCAAAGTC-CACACG
* **
117519 AGTTGGTAGCAACCTTTTCAAAAACCACA-G
1 AGTTGGTGGCAACCTTTTCAAAGTCCACACG
* * ** *
117549 AGTTGGTGACAACCTTTTCAAACTTTACACA
1 AGTTGGTGGCAACCTTTTCAAAGTCCACACG
* *** *
117580 AGTTGTTAAAAACTTTTTCAAAAGTCCACACG
1 AGTTGGTGGCAACCTTTTC-AAAGTCCACACG
** * * **
117612 AGTTAATGACAACCTTTTCAATGTCCACATA
1 AGTTGGTGGCAACCTTTTCAAAGTCCACACG
* * ** *
117643 ACTTGTTGGCAACCTTTTCAAAAACCCACACA
1 AGTTGGTGGCAACCTTTTC-AAAGTCCACACG
* * * *
117675 AGTTGGTGGCAACCATTCCAAAATCCCACTCG
1 AGTTGGTGGCAACCTTTTCAAAGT-CCACACG
* * *
117707 AGTTGGTCGCAACCTTTTCAAAATCTAACACG
1 AGTTGGTGGCAACCTTTTCAAAGTC-CACACG
* *
117739 AGTTGGTAGCAACC-TTTCAAAGGCCCACACG
1 AGTTGGTGGCAACCTTTTCAAA-GTCCACACG
* * *
117770 AGTTGGTGGTAA-CTATTTCAAAATCCCACATG
1 AGTTGGTGGCAACCT-TTTCAAAGT-CCACACG
*
117802 AGTTGGTGGCAACCTTTGCCAAAGTCCACACG
1 AGTTGGTGGCAACCTTT-TCAAAGTCCACACG
* * *
117834 AGTTGGTGGCAACCTTTTCAAAAGTCTAAAAG
1 AGTTGGTGGCAACCTTTTC-AAAGTCCACACG
* * *
117866 AGTTGGTGGCAATCATTTCAAAAG-CTCATACG
1 AGTTGGTGGCAACCTTTTC-AAAGTC-CACACG
* * * *
117898 AGTTAGTAGCAACCTTTTCAAAGGCCCACATG
1 AGTTGGTGGCAACCTTTTCAAA-GTCCACACG
** * *
117930 AGTCAGTGGGAATCTTTTCAAAAGTCCACACG
1 AGTTGGTGGCAACCTTTTC-AAAGTCCACACG
* * * *
117962 AGTTGGTAGCAACATTTTCAAAGCCCACATG
1 AGTTGGTGGCAACCTTTTCAAAGTCCACACG
* *
117993 AGTTGTTGGCAACCTTTTCAAAAG-CCTACATG
1 AGTTGGTGGCAACCTTTTC-AAAGTCC-ACACG
** *
118025 AGTTGGTAACAACC-TTTCAAAATCCTACACG
1 AGTTGGTGGCAACCTTTTCAAAGTCC-ACACG
*
118056 AGTTGGTAGCAACCTTTTCAAAAG-CCTACACG
1 AGTTGGTGGCAACCTTTTC-AAAGTCC-ACACG
* * * *
118088 AGTTGGTGGTAAGCTTTGT-AAATGGCCACACA
1 AGTTGGTGGCAACCTTT-TCAAA-GTCCACACG
** * * *
118120 AGTTGGTGGCAAATTTTTCAAAGCCCAAATG
1 AGTTGGTGGCAACCTTTTCAAAGTCCACACG
** ** *
118151 AGTTATTGGCAACCTTTTCAAAACCCGACAGG
1 AGTTGGTGGCAACCTTTTCAAAGTCC-ACACG
** *
118183 AGTTGGTGGTTACCTTTTCAAAAATCCACACG
1 AGTTGGTGGCAACCTTTTC-AAAGTCCACACG
* * *
118215 AGTTGGTGGGAACCTTTTCAAAAATTCACACG
1 AGTTGGTGGCAACCTTTTC-AAAGTCCACACG
* *
118247 AGTTGGTGGTAA-CTATTTCAAAGTCCACATG
1 AGTTGGTGGCAACCT-TTTCAAAGTCCACACG
* * * * **
118278 AGTTGATAGCAACC-TTTCAAAAGTCTATAAA
1 AGTTGGTGGCAACCTTTTC-AAAGTCCACACG
* *
118309 AGTTGGTGGCAACCTTTTTAATAGCCCAAAAGCCCACACA
1 AGTTGGTGGCAACC--TTT--T----C-AAAGTCCACACG
* * * *
118349 AATTGGTGGTAACCATTTCAAAGCCCACACG
1 AGTTGGTGGCAACCTTTTCAAAGTCCACACG
* ** * * ** *
118380 AGTTGATGATAACTTTTTTAAAAGTCTTCAAG
1 AGTTGGTGGCAAC-CTTTTCAAAGTCCACACG
* * * **
118412 AGTTGGTAGCAACTTTTTCAAAAGCCCACGTG
1 AGTTGGTGGCAACCTTTTC-AAAGTCCACACG
** * *
118444 AGTTAGG-ACCAACCTTTTCAAAATCTCACATG
1 AGTT-GGTGGCAACCTTTTCAAAGTC-CACACG
* * * * * * *
118476 AGTAGATGGCAACATTTTTAAAATCCCATATG
1 AGTTGGTGGCAACCTTTTCAAAGT-CCACACG
* * *
118508 AGTTGGTAGCAACCTTTTCAAAGGCTCACATG
1 AGTTGGTGGCAACCTTTTCAAAGTC-CACACG
* * * *
118540 AGTTGGCGGTAACCTTTTCAGAAGTCCATATG
1 AGTTGGTGGCAACCTTTTCA-AAGTCCACACG
** *
118572 AGTTGGTGATAACATTTTCAAAG-CCACACG
1 AGTTGGTGGCAACCTTTTCAAAGTCCACACG
* * **
118602 AGTTGTTGTCAACCTTTTCAAAAG-CCTACGTG
1 AGTTGGTGGCAACCTTTTC-AAAGTCC-ACACG
* * * *
118634 AGTTGGTGGAAACTTTTTC-AACTACCTACACA
1 AGTTGGTGGCAACCTTTTCAAAGT-CC-ACACG
**
118666 AGTTGGTGGCAACCTTTTCAAAGTGTACACG
1 AGTTGGTGGCAACCTTTTCAAAGTCCACACG
* * * **
118697 AGTTAGTGGTAACCTTTTAAAAGGTTGACACG
1 AGTTGGTGGCAACCTTTTCAAA-GTCCACACG
* * *
118729 AGTTGGTGGTAATCATTTCAAAGTCCACACG
1 AGTTGGTGGCAACCTTTTCAAAGTCCACACG
* * *
118760 AGTTGATAGCAACCTTTCAAAACCCCAAAAG-CCTACACG
1 AGTTGGTGGCAACCTTT-------TC-AAAGTCC-ACACG
* *
118799 AGTTGGTGGTAACCTTTTCAAAAGTCTACGA-G
1 AGTTGGTGGCAACCTTTTC-AAAGTCCAC-ACG
** *
118831 AGTTGGTCACAACCTTTTCAAAAGCCCACACG
1 AGTTGGTGGCAACCTTTTC-AAAGTCCACACG
* ** * **
118863 AGTTGATAACAACCTTTTTAAAGTCCACATA
1 AGTTGGTGGCAACCTTTTCAAAGTCCACACG
** * * *
118894 AGTTATTGGCAACCTTTCCAAAAG-CTCATACA
1 AGTTGGTGGCAACCTTTTC-AAAGTC-CACACG
* * * *
118926 AGTTAGTGGCAACCTTTTCAAAATCTACATG
1 AGTTGGTGGCAACCTTTTCAAAGTCCACACG
* *
118957 AGTTGGTAGCAACCTTTTCAAAAG-CTCACAGG
1 AGTTGGTGGCAACCTTTTC-AAAGTC-CACACG
* **
118989 AGTTGGTGACAACCTTTTCAAAGTCCACATA
1 AGTTGGTGGCAACCTTTTCAAAGTCCACACG
* *
119020 AGTTGTTGGCAACATTTTCAAAAGTCCACACG
1 AGTTGGTGGCAACCTTTTC-AAAGTCCACACG
119052 AGTTGGTGGCAACCTTTTCAAAG-CCTACACG
1 AGTTGGTGGCAACCTTTTCAAAGTCC-ACACG
* * *
119083 AGTTGTTGACAACCTTTTTAAAAG-CTCACACG
1 AGTTGGTGGCAACC-TTTTCAAAGTC-CACACG
* *
119115 AGTTGGTGGTAA-CTTTTACAAAAAG-CCACACA
1 AGTTGGTGGCAACCTTTT-C--AAAGTCCACACG
* * * * * *
119147 AGTTAGTGGTAACCTTTTTAAAAGCCCATAGG
1 AGTTGGTGGCAACC-TTTTCAAAGTCCACACG
** * * *
119179 AGTTACTGGTAACCTTTTCAATGTTCACACG
1 AGTTGGTGGCAACCTTTTCAAAGTCCACACG
* * ** * *
119210 GGTTTGTGGC-ACCATAGTCAAAGTCTACATG
1 AGTTGGTGGCAACC-TTTTCAAAGTCCACACG
* * *
119241 AGTTGGTAGTAACTTTTTCAAAAG-CCTACACG
1 AGTTGGTGGCAACCTTTTC-AAAGTCC-ACACG
* * * *
119273 TGTTGATGGTAACCTTTTCAAAAGCCCACACG
1 AGTTGGTGGCAACCTTTTC-AAAGTCCACACG
* * * **
119305 AGTTGGTGGCAACCATTTGAATGTCCACATA
1 AGTTGGTGGCAACCTTTTCAAAGTCCACACG
* * *
119336 AGTTGATGGCAACC-TTTCAAAAGTCTACAAG
1 AGTTGGTGGCAACCTTTTC-AAAGTCCACACG
** * * * *
119367 AGTCAGTGGCATCCATTTTAAAAGCCCAAAAGCCCATAAG
1 AGTTGGTGGCAACC-TTTT-------C-AAAGTCCACACG
** * * * *
119407 AGTTGGAAGCCA-CTATTTCAATGTCTACATG
1 AGTTGGTGGCAACCT-TTTCAAAGTCCACACG
* * * *
119438 AGTTGGTGACAACCTTTTGAAAAGTCTACAAG
1 AGTTGGTGGCAACCTTTT-CAAAGTCCACACG
* * *
119470 AGTTGGTAGTAACCTTTTCAAAAGCCCACACG
1 AGTTGGTGGCAACCTTTTC-AAAGTCCACACG
*** * *
119502 AGTTGGTAATAACCTTTTCAAAGTCTACACA
1 AGTTGGTGGCAACCTTTTCAAAGTCCACACG
* *
119533 AGTTGTTGGCAACCTTTTCAAAAG-CTCACACA
1 AGTTGGTGGCAACCTTTTC-AAAGTC-CACACG
** * * * *
119565 AGTTGGTGATAACTTTTTCAAAATCTCGCATG
1 AGTTGGTGGCAACCTTTTCAAAGTC-CACACG
* * * * * *
119597 AATTAGAGGTAACCTTTTCAAAATCACATAC-
1 AGTTGGTGGCAACCTTTTCAAAGTC-CACACG
* * *
119628 ATGTTGGTAGCAACCTTTTCAAAGGCCTCCACG
1 A-GTTGGTGGCAACCTTTTCAAAGTCC-ACACG
** ** *
119661 AGTTTATGATAACCTTTTCGATAGTCCACACG
1 AGTTGGTGGCAACCTTTTC-AAAGTCCACACG
* * **
119693 AGTTGGTGGCAACCTTTTCGAAGCCCACGTG
1 AGTTGGTGGCAACCTTTTCAAAGTCCACACG
* ** * *
119724 AGTTGTTGGCAACCTTATAAAAAGTCTACATG
1 AGTTGGTGGCAACCTT-TTCAAAGTCCACACG
* ** *
119756 AGTTGGTAGCAACCTTTTCAAAAACCCACATG
1 AGTTGGTGGCAACCTTTTC-AAAGTCCACACG
* * ** *
119788 AGTTGGTAGCAACCTTTTCAAAACTGTACATG
1 AGTTGGTGGCAACCTTTTC-AAAGTCCACACG
* *** *
119820 AGTTAGTGGCAA-CTATTTCAAAGTCTGTAAG
1 AGTTGGTGGCAACCT-TTTCAAAGTCCACACG
** *
119851 AGTTGACGGCAACC-TTTCAAAGTCCACAAG
1 AGTTGGTGGCAACCTTTTCAAAGTCCACACG
*
119881 AGTTGGTGACAACCTTTTCAAAAGCCTAAAAACCCACACG
1 AGTTGGTGGCAACCTTTTC-AAAG--T------CCACACG
* * * *
119921 AATTGGTGACAACCATTTT-GAAGTCTACACG
1 AGTTGGTGGCAACC-TTTTCAAAGTCCACACG
* * * * * **
119952 AGTTAGTGGTAACCTTTTTAAAATTGCACAAT
1 AGTTGGTGGCAACC-TTTTCAAAGTCCACACG
* *
119984 AGTTGGTGGCAACCTTTTCAAAAGCCCACCCG
1 AGTTGGTGGCAACCTTTTC-AAAGTCCACACG
*
120016 AGTTGGTGACAACCTTTTCAAAGT-CA-AC-
1 AGTTGGTGGCAACCTTTTCAAAGTCCACACG
* * * * *
120044 A-TTGTTGGCAACATTTTCAAAAGCCCAAATG
1 AGTTGGTGGCAACCTTTTC-AAAGTCCACACG
* * *
120075 AGTTGGTGGTAACCTTTTCAAAATCCCACATG
1 AGTTGGTGGCAACCTTTTCAAAGT-CCACACG
* * * * *
120107 AGTTGGTGGTAACTTTTTCAAAATCTTAAACG
1 AGTTGGTGGCAACCTTTTCAAAGTC-CACACG
* * * *
120139 AATTGGTAGCAACCTTTTCAAAGGCCCACATG
1 AGTTGGTGGCAACCTTTTCAAA-GTCCACACG
*** * * *
120171 AGTTGGTTATAACATTTTCAAAATTCTACACG
1 AGTTGGTGGCAACCTTTTC-AAAGTCCACACG
* * * *
120203 AGTTGTTGGCAACCTTTTTAAAAG-CTCGCATG
1 AGTTGGTGGCAACC-TTTTCAAAGTC-CACACG
* * *
120235 -GTTTGGTGGTAACCTTTTCAAACTTCACACG
1 AG-TTGGTGGCAACCTTTTCAAAGTCCACACG
* * **
120266 CGTTTGTGGC-ACCATAGTCAAAGTCCA-AC-
1 AGTTGGTGGCAACC-TTTTCAAAGTCCACACG
* *** * ** * **
120295 A-TT-TTCAAAAGC-TCACACTAGTTGGATGGCATC-
1 AGTTGGTGGCAACCTTTTCA-AAG-TCCA---CA-CG
* * * * * *
120328 A-TT-TTTG-AA-GTTTATAAAAGT-TAGTGGCACC
1 AGTTGGTGGCAACCTTT-TCAAAGTCCA----CACG
* ** *** *
120359 A--TAGT--CAAAGTCCACACGAGTTAGTGGCA-AC-
1 AGTTGGTGGCAACCTTTTCA--A---AGT-CCACACG
* *** ** * ** *
120390 A-TT-TTCAAAAGCC--CACATGAGTTGGTAGCAGCCTT
1 AGTTGGTGGCAA-CCTTTTCA-AAG-T-CCA-CA--C-G
* *** * * * * * *
120425 ATTTAAAGCCCACACGTCTT-AATG-GCA-ACC
1 AGTTGGTG-GCA-ACCTTTTCAAAGTCCACACG
** * * * * *
120455 TTTTCAAGGT-CCACACATGTT---GGTGGCA-AC-
1 AGTT---GGTGGCA-ACCTTTTCAAAGT-CCACACG
* * *** *
120485 -CTT-CTCAAAAGCC---TAAAAG-CCTACACG
1 AGTTGGTGGCAA-CCTTTTCAAAGTCC-ACACG
** * ** *
120512 AGTTGGCAGTAACCTTTTCAAAAG-CTGTCGCG
1 AGTTGGTGGCAACCTTTTC-AAAGTC-CACACG
* ** * **
120544 AGTTAGTAACAACCTTTTCAAAGTCAACATA
1 AGTTGGTGGCAACCTTTTCAAAGTCCACACG
* * *
120575 AGTTGTTGGCAACC-TTTCGAAGGTCCACATG
1 AGTTGGTGGCAACCTTTTC-AAAGTCCACACG
* * *
120606 AGTTGGTGGCAACCTTTTCAAAATAACACATG
1 AGTTGGTGGCAACCTTTTCAAAGT-CCACACG
* * **
120638 AGTTGGTAGCAATCTTTTCAAAAACC-CACAG
1 AGTTGGTGGCAACCTTTTCAAAGTCCACAC-G
* * * * *
120669 TGTTGGTGACAACTTTTTCAAAGTCTACACA
1 AGTTGGTGGCAACCTTTTCAAAGTCCACACG
* * * *
120700 AGTTGTTGGAAACATTTTCAAAAGCCCACACG
1 AGTTGGTGGCAACCTTTTC-AAAGTCCACACG
* * * * * * *
120732 GGTTGATGACAACTTTTTCAAAATCCATACA
1 AGTTGGTGGCAACCTTTTCAAAGTCCACACG
*
120763 AGTTGTTGGCAACCTTTTCAAAAG-CTCACACG
1 AGTTGGTGGCAACCTTTTC-AAAGTC-CACACG
* * * **
120795 AGTTTGTGACAACCCTTTT-AAAATCTCACTTG
1 AGTTGGTGGCAA-CCTTTTCAAAGTC-CACACG
* * * * *
120827 AGTTGGTAGC-ACCTTCTCAAAATCTCAGATG
1 AGTTGGTGGCAACCTTTTCAAAGTC-CACACG
*
120858 AGTTGGTGGTAACCTTTTCAAAAG-CGCACACG
1 AGTTGGTGGCAACCTTTTC-AAAGTC-CACACG
* *
120890 AGTTGGTGGC-ACCTTTTGCAAAAGTGCACATG
1 AGTTGGTGGCAACCTTTT-C-AAAGTCCACACG
* * * *
120922 TGTTGGTGGC-ACGATTTTCAAAGCCCAAACG
1 AGTTGGTGGCAAC-CTTTTCAAAGTCCACACG
* * *
120953 AGTTGTTGGCAACCTTTTCAAAAGCCCACAGG
1 AGTTGGTGGCAACCTTTTC-AAAGTCCACACG
* *
120985 AGTTGGTGGCAACCTTTACAAAGTTCACACG
1 AGTTGGTGGCAACCTTTTCAAAGTCCACACG
** * ** * *
121016 AGTTTATAGC-ACCATAGTCAAAGTCTACATG
1 AGTTGGTGGCAACC-TTTTCAAAGTCCACACG
* ** * * *
121047 AGTTGGAT-GTAATATTTTCAAAAGCCCATATG
1 AGTTGG-TGGCAACCTTTTC-AAAGTCCACACG
* * * * * *
121079 AGTTGCTGGTAACCTTTTTAAAGTCTATACA
1 AGTTGGTGGCAACCTTTTCAAAGTCCACACG
* ** *
121110 AGTGTGGCGGC-ACCATAGTCAAAGTCCAAAC-
1 AGT-TGGTGGCAACC-TTTTCAAAGTCCACACG
*****
121141 AGGTTGGTGGCAAAAAAGTCAAAGTCCACACG
1 A-GTTGGTGGCAACCTTTTCAAAGTCCACACG
* * * *
121173 AGTTGGTGGTAACATTTTC-AA-TACGACATG
1 AGTTGGTGGCAACCTTTTCAAAGT-CCACACG
* *
121203 AGTTGGTAGCAACCTTTTCAAAAG-CAGACACG
1 AGTTGGTGGCAACCTTTTC-AAAGTC-CACACG
* * ** * * **
121235 AGTTTGTCGCTGCTCTTTTTAAAGCCCACATA
1 AGTTGGTGGCAAC-CTTTTCAAAGTCCACACG
** ** *
121267 AGTTAATATCAACCTTTTCAAAGTCCACATG
1 AGTTGGTGGCAACCTTTTCAAAGTCCACACG
* *
121298 AGATGGTGGCAACCTTTTCAAAAGTCTAAAAGCCCACACA
1 AGTTGGTGGCAACCTTTTC-AAAG--T------CCACACG
* ***
121338 AGTTGGTGGTAA-CTATTTCAAAGTTTTCACG
1 AGTTGGTGGCAACCT-TTTCAAAGTCCACACG
* * *
121369 AGTAGGTGGCAACATTTTCAAAAGTCTACGA-G
1 AGTTGGTGGCAACCTTTTC-AAAGTCCAC-ACG
* *
121401 AGTTGGTCGCAACCTTTTCAAAAG-CTCACATG
1 AGTTGGTGGCAACCTTTTC-AAAGTC-CACACG
* * **
121433 AGTTGGTGACAACCTTTTCAAAATCCACATA
1 AGTTGGTGGCAACCTTTTCAAAGTCCACACG
* ** *
121464 AGTTGTTGGCAACCACTTCAAAAG-CTCACACA
1 AGTTGGTGGCAACCTTTTC-AAAGTC-CACACG
* * *
121496 AGATGGTGGCAACCTTTTCAAAATCCCACATG
1 AGTTGGTGGCAACCTTTTCAAAGT-CCACACG
* *
121528 AGTTGGTAGCAACCTCTTCAAAAG-CTCACACG
1 AGTTGGTGGCAACCTTTTC-AAAGTC-CACACG
* ** * * *
121560 AGTTGCTAACAACCCTTTCAAAGTCCGCACA
1 AGTTGGTGGCAACCTTTTCAAAGTCCACACG
* *
121591 AGTTGTTGGCAACATTTTCAGAAGTCCACACG
1 AGTTGGTGGCAACCTTTTCA-AAGTCCACACG
*
121623 AGTTGGTGGCAACCTTTTCAATG-CCTACACG
1 AGTTGGTGGCAACCTTTTCAAAGTCC-ACACG
* * *
121654 AGTTGTTGGCAACCATTTT-AAAATCTCACATG
1 AGTTGGTGGCAACC-TTTTCAAAGTC-CACACG
* *
121686 AGTTGGTGGTAA-CTTTTACAGAA-ACCAACACG
1 AGTTGGTGGCAACCTTTT-CA-AAGTCC-ACACG
* * *
121718 AGTTGGTGGTAACCTTTTTAAAAG-CTCACATG
1 AGTTGGTGGCAACC-TTTTCAAAGTC-CACACG
* * *
121750 AGTTAGTGGTAACCTTTTCAAAGTTCACACG
1 AGTTGGTGGCAACCTTTTCAAAGTCCACACG
* ** * *
121781 AGTTTGTGGC-ACCATAGTCAAAGTCTACAGG
1 AGTTGGTGGCAACC-TTTTCAAAGTCCACACG
* * * * *
121812 AGTTGGTAGTAACTTTTTCAAAAG-CGTACATG
1 AGTTGGTGGCAACCTTTTC-AAAGTC-CACACG
* * * * *
121844 TGCTGGTAGTAACCTTTTCAAAAG-CCTACATG
1 AGTTGGTGGCAACCTTTTC-AAAGTCC-ACACG
* * * *
121876 AGTTTGCGGCAACCATGTCAAAGTCCACACG
1 AGTTGGTGGCAACCTTTTCAAAGTCCACACG
* ** *
121907 AGTTGATGGCAACC-TTTCAAAAGTTTACAAG
1 AGTTGGTGGCAACCTTTTC-AAAGTCCACACG
*
121938 AGTTGGTGGCAACCTTTTCAAAAGCCCAAAAGCCCACAAG
1 AGTTGGTGGCAACCTTTTC-AAAGTCC---A---CAC--G
** * * *
121978 AGTTGGAAGTAA-CTATTTCAATGTCCATACG
1 AGTTGGTGGCAACCT-TTTCAAAGTCCACACG
* * *
122009 AGTTGGTGGCAACCTTTTGAAAAGTCTACAAG
1 AGTTGGTGGCAACCTTTT-CAAAGTCCACACG
* * *
122041 AGTTAGG-GACAACCTTTTCAAAAGCCCACATG
1 AGTT-GGTGGCAACCTTTTC-AAAGTCCACACG
** * *
122073 AGTTGGTAACAACCTTTTCAAAGTCTACACA
1 AGTTGGTGGCAACCTTTTCAAAGTCCACACG
* * * * *
122104 AGTAGTTGGCAACTTTTTTTTTAAAAAGCCCACACG
1 AGTTGGTGGCAAC----CTTTT-CAAAGTCCACACG
* ** * **
122140 AGTTAGTAACAACCTTTTCAAAGTCAACATA
1 AGTTGGTGGCAACCTTTTCAAAGTCCACACG
* * * **
122171 AGTTGTTAGCAACCTTTTCAAAAGCCCACATA
1 AGTTGGTGGCAACCTTTTC-AAAGTCCACACG
* * * * * *
122203 AGTTGGTAGTAACTTTTTCAAAATCACATACA
1 AGTTGGTGGCAACCTTTTCAAAGTC-CACACG
* **
122235 AGTTGGTAGCAACCTTTTCAAAAACCACA-G
1 AGTTGGTGGCAACCTTTTCAAAGTCCACACG
* * * **
122265 AGTTAGTGACAACCTTTTCAAACTCCACATA
1 AGTTGGTGGCAACCTTTTCAAAGTCCACACG
** * * * * *
122296 AGTTATTAGAAACTTTTTTAAAAGTCCACACA
1 AGTTGGTGGCAAC-CTTTTCAAAGTCCACACG
** * * *
122328 AGTTAATGACAACCTTTTCAATGTCCACACA
1 AGTTGGTGGCAACCTTTTCAAAGTCCACACG
* * ** *
122359 ACTTGTTGGCAACCTTTTCAAAAACCCACACA
1 AGTTGGTGGCAACCTTTTC-AAAGTCCACACG
* * * *
122391 AGTTGGTGGTAACCTTTCCAAAATCCCACTCG
1 AGTTGGTGGCAACCTTTTCAAAGT-CCACACG
* * * *
122423 AGTCGGT--C--GC---TCAAAATCCTATACG
1 AGTTGGTGGCAACCTTTTCAAAGTCC-ACACG
* * * * * * *
122448 AGTAGGTAGTAA-CATTTGAAAGGCTCATACG
1 AGTTGGTGGCAACCTTTTCAAAGTC-CACACG
* * * *
122479 AGTTGGTGGTAACCATTTCAAAAGCCCA-ATG
1 AGTTGGTGGCAACCTTTTC-AAAGTCCACACG
* * *
122510 GGTTAGTGGCAACCTTTGCAAAAGTCCACACG
1 AGTTGGTGGCAACCTTTTC-AAAGTCCACACG
* * *
122542 AGTTGGTGGCAACCTCTTCAAGAG-CTCATAGG
1 AGTTGGTGGCAACCTTTTCAA-AGTC-CACACG
* * *
122574 AGTTGGTGGCAACCTTTTGAAAAATCTACACG
1 AGTTGGTGGCAACCTTTT-CAAAGTCCACACG
* * *
122606 TGTTAGT-GCTAA-CTATTTCAAAGTCCACACT
1 AGTTGGTGGC-AACCT-TTTCAAAGTCCACACG
** * *
122637 AGTTAATGCCAACC-TTTCAAAAGTCCACAAG
1 AGTTGGTGGCAACCTTTTC-AAAGTCCACACG
* *
122668 AGTTGGTGGCAACTTTTTCAAAAGCCCAAAAGCCCACACG
1 AGTTGGTGGCAACCTTTT--------C-AAAGTCCACACG
* * * *
122708 AATTAGTGGAAACCATTTCAAAGTCCACACG
1 AGTTGGTGGCAACCTTTTCAAAGTCCACACG
* * *
122739 AGTTGGTGGCAACCTTTTCAAAAGTCTAGAAG
1 AGTTGGTGGCAACCTTTTC-AAAGTCCACACG
* * *
122771 AGTTGGTGGCAATCATTTCAAAAG-CTCACATG
1 AGTTGGTGGCAACCTTTTC-AAAGTC-CACACG
* * *
122803 AGTTGGTAGCAACCTTTTCAAAGGCCGACATG
1 AGTTGGTGGCAACCTTTTCAAAGTCC-ACACG
* *
122835 AGTCGGTGGGAACCTTTTCAAAAGTCCACACG
1 AGTTGGTGGCAACCTTTTC-AAAGTCCACACG
* *
122867 AGTTGGTAGCAACCTTTTCAAAGCCCACACG
1 AGTTGGTGGCAACCTTTTCAAAGTCCACACG
** * *
122898 AGTTATTGGCAACCTTTTTAAAAG-CTCACATG
1 AGTTGGTGGCAACC-TTTTCAAAGTC-CACACG
* * * *
122930 AGTTGGTGACGACC-TTTCAAAATCCTGCACG
1 AGTTGGTGGCAACCTTTTCAAAGTCC-ACACG
* *
122961 AGTTGGTAGCAACCTTTTTAAAAG-CCTACAC-
1 AGTTGGTGGCAACC-TTTTCAAAGTCC-ACACG
* * * ** *
122992 ATGTTGGTGGTAAGCTTTGCAAATGGGCACACA
1 A-GTTGGTGGCAACCTTTTCAAA-GTCCACACG
* * * * *
123025 AGTTGGTGACAACTTTTTCAAAGCCCAAATG
1 AGTTGGTGGCAACCTTTTCAAAGTCCACACG
* * *
123056 AGTTGTTGGCAACCTTTTCAAAAG-CTGACAGG
1 AGTTGGTGGCAACCTTTTC-AAAGTC-CACACG
* * *
123088 AGTTGGTGGTAACCTTTTCAAAAATCCAGACG
1 AGTTGGTGGCAACCTTTTC-AAAGTCCACACG
** * * *
123120 AGTTGGCAAG-AACCTTTTCAAAAATTCACACA
1 AGTTGG-TGGCAACCTTTTC-AAAGTCCACACG
* *
123152 AGTTGGTGGCAA-CTATTTCAAAGTGCACATG
1 AGTTGGTGGCAACCT-TTTCAAAGTCCACACG
* * * *** **
123183 AATTGATAGCAACC-TTTCAAAAGTCTGTAAA
1 AGTTGGTGGCAACCTTTTC-AAAGTCCACACG
* *
123214 AGTTGGTAGCAACCTTTTCAATAGTCCAAAAGCCCACACA
1 AGTTGGTGGCAACCTTTTCAA-AGT--------CCACACG
* * * * *
123254 AATTTGTGGTAACCATTTCAAAGCCCACACG
1 AGTTGGTGGCAACCTTTTCAAAGTCCACACG
* * * * *
123285 AGTTGATGGCAACTTTTTCAAAAGTCTATAAG
1 AGTTGGTGGCAACCTTTTC-AAAGTCCACACG
* * *
123317 AGTTGGTAGCAA---TGTCAAAAGCCCACACG
1 AGTTGGTGGCAACCTTTTC-AAAGTCCACACG
* ** * *
123346 AGTTAGCAGCAACCTTTTCAAAATCTCACATG
1 AGTTGGTGGCAACCTTTTCAAAGTC-CACACG
* * * * * **
123378 AGTTGATGGAAACATTTTTAATA-TCCCATATA
1 AGTTGGTGGCAACCTTTTCAA-AGT-CCACACG
* **
123410 AGTTCGTAACAACCTTTTCAAAAG-CCACACG
1 AGTTGGTGGCAACCTTTTC-AAAGTCCACACG
* * *
123441 AGTTGGTGGTAACCTTTTAAGAAGTCCATACG
1 AGTTGGTGGCAACCTTTTCA-AAGTCCACACG
** * *
123473 AGTTGGTGATAACCTTCTCAGAG-CCACACG
1 AGTTGGTGGCAACCTTTTCAAAGTCCACACG
* * * * **
123503 AGTTGTTGTCAACATTTTTAAAAG-CCTACGTG
1 AGTTGGTGGCAAC-CTTTTCAAAGTCC-ACACG
* * ** *
123535 AGTTGGTGGTAACTTTTTC-ATTTACATACACG
1 AGTTGGTGGCAACCTTTTCAAAGT-C-CACACG
* *
123567 AGTTGGTGGCAACCTTTTCAAAGTCTACAAG
1 AGTTGGTGGCAACCTTTTCAAAGTCCACACG
* * *
123598 AGTTGGTGGTAACCTTTTAAAAGGCCCACACG
1 AGTTGGTGGCAACCTTTTCAAA-GTCCACACG
* * * *
123630 AGTTGGTGGTAATCATTCCAAAGTCCACACG
1 AGTTGGTGGCAACCTTTTCAAAGTCCACACG
* * * *
123661 AGTTGATAGCAACCTTTCAAAAGCCCAAAAGCCCACACG
1 AGTTGGTGGCAACCTTT-------TC-AAAGTCCACACG
* * *
123700 AGTTGATAGCAACCTTTTAAAAGCCCAAAAGCCCACACG
1 AGTTGGTGGCAACCTTTT-------C-AAAGTCCACACG
* *
123739 AGTTGGTAGCAACCTTTTCAAAAGTCTACGA-G
1 AGTTGGTGGCAACCTTTTC-AAAGTCCAC-ACG
* * * *
123771 AATTGGTCGCAACCTTTTCAAAAATCCACATG
1 AGTTGGTGGCAACCTTTTC-AAAGTCCACACG
* * * **
123803 AATTGGTGACAACCTTTT-TAAGTCCACATA
1 AGTTGGTGGCAACCTTTTCAAAGTCCACACG
* *
123833 AGTT-GTCAGCAACCTTTTCAAAAG-CTCACACA
1 AGTTGGT-GGCAACCTTTTC-AAAGTC-CACACG
* *
123865 AGTTGGTGGCAACCTTTTCAAAATCCCACATG
1 AGTTGGTGGCAACCTTTTCAAAGT-CCACACG
* * *
123897 AGTTGGTAGCAACCTTTTCAAAAG-CTTACAGG
1 AGTTGGTGGCAACCTTTTC-AAAGTC-CACACG
* * *
123929 AGATGGTGACAACCTTTTCAAAGTCCACACA
1 AGTTGGTGGCAACCTTTTCAAAGTCCACACG
* * *
123960 AGTTGTTGGCAACATTTTCAAAAGTCCACATG
1 AGTTGGTGGCAACCTTTTC-AAAGTCCACACG
* * *
123992 AGTTGGTGGCAACCTTTGCAAAG-CCTGCATG
1 AGTTGGTGGCAACCTTTTCAAAGTCC-ACACG
* *
124023 AGTTGTTGGCAACCTTTTTAAAAG-CTCACACG
1 AGTTGGTGGCAACC-TTTTCAAAGTC-CACACG
* *
124055 AGTTGGTGGTAA-CTTTTACAGAAAGT-CACATG
1 AGTTGGTGGCAACCTTTT-C--AAAGTCCACACG
* * * *
124087 AGTTGGTGGTAACCTTTGT-AGAAGCCCATAGG
1 AGTTGGTGGCAACCTTT-TCA-AAGTCCACACG
** * * *
124119 AGTTATTGGTAATCTTTTCAAAGTTCACACG
1 AGTTGGTGGCAACCTTTTCAAAGTCCACACG
* ** ** *
124150 AGTTTGCAGC-ACCATAGTCAAAGTCTACA-G
1 AGTTGGTGGCAACC-TTTTCAAAGTCCACACG
* * * **
124180 AGTTGGTAGTAACTTTTTCAAAAACCTACACG
1 AGTTGGTGGCAACCTTTTCAAAGTCC-ACACG
* * * * * *
124212 TGCTGGTGGTAACTTTTTCAAAAGCCCACATG
1 AGTTGGTGGCAACCTTTTC-AAAGTCCACACG
* * *
124244 AGTTGGTGGCAACCATTTGAAAGTCCACATG
1 AGTTGGTGGCAACCTTTTCAAAGTCCACACG
* * *
124275 AGTTGATGGCAACC-TTTCAAAAGTCTACAAG
1 AGTTGGTGGCAACCTTTTC-AAAGTCCACACG
* * **
124306 AGTTGGTGGCAGCCTTTTCAAAAGCCCAAAAGCCCATAAA
1 AGTTGGTGGCAACCTTTTC-AAAGTCC---A---C--ACG
** **
124346 AGTTGGAAGTTA-CTATTTCAATA-TCCACACG
1 AGTTGGTGGCAACCT-TTTCAA-AGTCCACACG
* * * *
124377 AGTTGGTGGTAACCTTTTGAAAAGTCTACAAG
1 AGTTGGTGGCAACCTTTT-CAAAGTCCACACG
* * *
124409 AGTTGGTAGTAACCTTTACAAAAGTCCACACG
1 AGTTGGTGGCAACCTTTTC-AAAGTCCACACG
** * *
124441 AGTTGGTAACAACCTTTTCAAAGTCTACACA
1 AGTTGGTGGCAACCTTTTCAAAGTCCACACG
* *
124472 AGTTGTTGGCAACCTTTTCAAAAGCCCACACG
1 AGTTGGTGGCAACCTTTTC-AAAGTCCACACG
** * * **
124504 AGTTGGTGATAACTTTTTCAATA-TCTCGCATT
1 AGTTGGTGGCAACCTTTTCAA-AGTC-CACACG
* * *
124536 AGTTGGTGGTAACCTTTTCAAAATCACATAC-
1 AGTTGGTGGCAACCTTTTCAAAGTC-CACACG
* * * * *
124567 ATGTTGGTAGAAACCTTTTCAAAGGCCTATATG
1 A-GTTGGTGGCAACCTTTTCAAAGTCC-ACACG
* ** * *
124600 AGTTTGTGATAACCTTTTCAATAGTTCACACA
1 AGTTGGTGGCAACCTTTTCAA-AGTCCACACG
* * *
124632 AGTTGGTGGCAGCCTTTTCAAAGCCCACGCG
1 AGTTGGTGGCAACCTTTTCAAAGTCCACACG
* **
124663 AGTTGTTGGCAACCTTATAAAAAGTCCACACG
1 AGTTGGTGGCAACCTT-TTCAAAGTCCACACG
* * *
124695 AGTTGGTGGCAACCTTTTCAAAAATCCATATG
1 AGTTGGTGGCAACCTTTTC-AAAGTCCACACG
* * * *
124727 AGTTGGTAGCAACCTTTTCAAAACTCTACATG
1 AGTTGGTGGCAACCTTTTC-AAAGTCCACACG
*
124759 AGTTGGTGGCAA-CTATTTCAAAGTCCACACA
1 AGTTGGTGGCAACCT-TTTCAAAGTCCACACG
* **
124790 AGTTGTTGGCAATATTTTCAAAAGTCCACACG
1 AGTTGGTGGCAACCTTTTC-AAAGTCCACACG
**
124822 AGTTGGTGGCAACCTTTTCAAAGTCCACATA
1 AGTTGGTGGCAACCTTTTCAAAGTCCACACG
* * * *
124853 AGTTGTTGGCAACCATTTTAAAAG-CTCAAACA
1 AGTTGGTGGCAACC-TTTTCAAAGTC-CACACG
* **
124885 AGTTGTTGGCAA-CTTTTACAAAAACCCACACG
1 AGTTGGTGGCAACCTTTT-C-AAAGTCCACACG
** * * **
124917 AGTTGGTGATAACCTTTTTAAAAGCCCATTCG
1 AGTTGGTGGCAACC-TTTTCAAAGTCCACACG
* * *
124949 AGTTAGTGGTAACCTTTTCAAAGTTCACACG
1 AGTTGGTGGCAACCTTTTCAAAGTCCACACG
* * ** * *
124980 AGTTTGTGG-TACCATAATCAAAGTCTACACA
1 AGTTGGTGGCAACC-TTTTCAAAGTCCACACG
* * * * ** *
125011 AGTTAGTGGTAACGTTTTTAAAAGTTGACAGG
1 AGTTGGTGGCAAC-CTTTTCAAAGTCCACACG
* * * *
125043 AGTTGATGGCAACCATTTCAAAAGCCCACAAG
1 AGTTGGTGGCAACCTTTTC-AAAGTCCACACG
* * * * * *
125075 AATTAGTGGCAACCTTTTTAAAGTTCATATG
1 AGTTGGTGGCAACCTTTTCAAAGTCCACACG
* * *
125106 AGTTGGTGGTAACCTTTTCAAAAGCCCACACA
1 AGTTGGTGGCAACCTTTTC-AAAGTCCACACG
* * * *
125138 AATT-GTCGGTAGCCTTTTTAAAAGTCCACACG
1 AGTTGGT-GGCAACC-TTTTCAAAGTCCACACG
* * *
125170 AGTTGATGACAACCTTTTCAAAGTCCACATG
1 AGTTGGTGGCAACCTTTTCAAAGTCCACACG
* * * * *
125201 AATTGGGGGCAATCTTTTCAAAGGCCCACACA
1 AGTTGGTGGCAACCTTTTCAAA-GTCCACACG
* * *
125233 AGTTGGTGGTAACATTTTCAAAAGTCCACACT
1 AGTTGGTGGCAACCTTTTC-AAAGTCCACACG
** **
125265 AGTTGGTGAAAACCTTTTCAAAG-CTGCACG
1 AGTTGGTGGCAACCTTTTCAAAGTCCACACG
* * *
125295 AGTTGTTGGCAACCTTTTCGAAAGCCCACATG
1 AGTTGGTGGCAACCTTTTC-AAAGTCCACACG
* * ** *
125327 AGTTAGTGGCAACTTTTTCAACAACCCACAAG
1 AGTTGGTGGCAACCTTTTCAA-AGTCCACACG
* * *
125359 AGTTGGTGGCAACTTTTTTAAAAGCCCACACG
1 AGTTGGTGGCAAC-CTTTTCAAAGTCCACACG
* * * * * *
125391 ATTTGGCGACAACTTTTTCAAAGTTCACACA
1 AGTTGGTGGCAACCTTTTCAAAGTCCACACG
* ** *
125422 AGTTTGTGGC-ACCATAGTCAAAGTCCACAAG
1 AGTTGGTGGCAACC-TTTTCAAAGTCCACACG
* * * * * **
125453 AGTTAGTGGTAACATTTTAAAAAGTCTACATA
1 AGTTGGTGGCAACCTTTT-CAAAGTCCACACG
* * * *
125485 AGTTGATTGCAACCATTTCAAAAGCCCACACG
1 AGTTGGTGGCAACCTTTTC-AAAGTCCACACG
* * * *
125517 AATTGGTGGCAACCTTTTTAAAGTCCATATG
1 AGTTGGTGGCAACCTTTTCAAAGTCCACACG
* * **
125548 ACTTGGTGGCAACCTTTTCAAAAGACTGCACG
1 AGTTGGTGGCAACCTTTTC-AAAGTCCACACG
* * ** * * * *
125580 TGCTATTGG-AAGCTTTTTTAAAAGCCCACATG
1 AGTTGGTGGCAA-C-CTTTTCAAAGTCCACACG
* **
125612 AGTTGATGGCAACCTTTTCAAAGTCCACATA
1 AGTTGGTGGCAACCTTTTCAAAGTCCACACG
* *
125643 AGTTAGG-GGCAACCTTTTCAAAGCCCACACA
1 AGTT-GGTGGCAACCTTTTCAAAGTCCACACG
* * *
125674 AATTGG-GAGCAACCTTTTCAAAGTTCACATG
1 AGTTGGTG-GCAACCTTTTCAAAGTCCACACG
125705 AGTT
1 AGTT
125709 TATGGCACCA
Statistics
Matches: 12018, Mismatches: 3195, Indels: 2010
0.70 0.19 0.12
Matches are distributed among these distances:
23 1 0.00
24 4 0.00
25 21 0.00
26 18 0.00
27 49 0.00
28 35 0.00
29 84 0.01
30 501 0.04
31 4221 0.35
32 5977 0.50
33 355 0.03
34 49 0.00
35 57 0.00
36 33 0.00
37 10 0.00
38 33 0.00
39 164 0.01
40 363 0.03
41 19 0.00
42 3 0.00
43 3 0.00
44 7 0.00
45 4 0.00
46 2 0.00
47 2 0.00
49 3 0.00
ACGTcount: A:0.31, C:0.22, G:0.19, T:0.28
Consensus pattern (31 bp):
AGTTGGTGGCAACCTTTTCAAAGTCCACACG
Found at i:109568 original size:63 final size:62
Alignment explanation
Indices: 109460--125715 Score: 4018
Period size: 63 Copynumber: 253.7 Consensus size: 62
109450 AGCCTAAACT
* * * * *
109460 AGTTGGTCGCAACCTTTTCAATA-TCAACACGAGTTTATGGTAACCTTTTTAAAGGCTCACACG
1 AGTTGGTGGCAACCTTTTCAA-AGTCAACACGAGTTGATGGCAACCTTTTCAAAGTC-CACACG
* * * **
109523 AGTTGGTGGCAACCATTTCAAAGTCAACACGAGTTGATAGCAACC-TTTCAAAAGTCCATAAA
1 AGTTGGTGGCAACCTTTTCAAAGTCAACACGAGTTGATGGCAACCTTTTC-AAAGTCCACACG
* * * *
109585 AGTTGGTGGTAAACTTTTCAAAGGCCCAAAAGCCTACACGAGTT-AGTGGCAACCATTTCAAAGT
1 AGTTGGTGGCAACCTTTTCAAA-G-TC---A----ACACGAGTTGA-TGGCAACCTTTTCAAAGT
109649 CCACACG
56 CCACACG
** * * * ** * * *
109656 AGTTAATGGCAACTTTTTCAAAGTCCACATGAGTTGGGGGCAACCTTTTCCAAGCCCACACA
1 AGTTGGTGGCAACCTTTTCAAAGTCAACACGAGTTGATGGCAACCTTTTCAAAGTCCACACG
* * * * ** * * * *
109718 AGTTAGTGGCAGCCATTTCAAAGTCCACGTGAGTTGGTGGCAATCTTTTCAAAAGACCACACA
1 AGTTGGTGGCAACCTTTTCAAAGTCAACACGAGTTGATGGCAACCTTTTC-AAAGTCCACACG
* * * * * *
109781 AGTTGTTGGCAGCCTTTTTAAAAGCCCACACGAGTTGATGGCAACCTTTTCAAAGTCTACACG
1 AGTTGGTGGCAACC-TTTTCAAAGTCAACACGAGTTGATGGCAACCTTTTCAAAGTCCACACG
* * **
109844 AGTTGG-GGTAACCTTTTCAAA-TCCAACACGAGTTTG-TGGCAACCTTTTTAAAGTCCGTACG
1 AGTTGGTGGCAACCTTTTCAAAGT-CAACACGAG-TTGATGGCAACCTTTTCAAAGTCCACACG
* * * * * * *
109905 AGTAGGT-GCTAACCTTTTAAAAAGCCTAA-ACTAGTTGGTGGTAACCTTTTCAATGTCCACACG
1 AGTTGGTGGC-AACCTTTT-CAAAGTC-AACACGAGTTGATGGCAACCTTTTCAAAGTCCACACG
* * * * * *
109968 AGTTGGTGGCAAACTTTTCAAAAGCTC-ATACGAGTTGGTGGTAACCTTTAT-AAAGGCTTACAC
1 AGTTGGTGGCAACCTTTTC-AAAG-TCAACACGAGTTGATGGCAACCTTT-TCAAAGTC-CACAC
110031 G
62 G
* * * * * * **
110032 AGTTGGTAGCAACCATTTT-AAAGTCCACACGAGTTAATAGCAGCC-TTTCAAAAGTCCATAAA
1 AGTTGGTGGCAACC-TTTTCAAAGTCAACACGAGTTGATGGCAACCTTTTC-AAAGTCCACACG
* * * * *
110094 AGTTGGTGTGTAA-CTATTTAAAAGCCCAAAAGCCTACATGAGTTGGTGGCAACCATTTCAAAGT
1 AGTTGGTG-GCAACCT-TTTCAAAG-TC--AA--C-AC--GAGTTGATGGCAACCTTTTCAAAGT
*
110158 CCACAAG
56 CCACACG
* ** ** *
110165 AGTTGGTGGTAACCTTTTCAAAAGTCTGCAAAAGTT-AGTGGCAACCTTTTCAAAGTCCACATG
1 AGTTGGTGGCAACCTTTTC-AAAGTCAACACGAGTTGA-TGGCAACCTTTTCAAAGTCCACACG
* * * * * * * * *
110228 AGTTGGTGACAACCTTTTTAAAGCCCATACAAGTTGTTGGCAACCTTTTCAAAAGGCCACACA
1 AGTTGGTGGCAACCTTTTCAAAGTCAACACGAGTTGATGGCAACCTTTTC-AAAGTCCACACG
* ** *
110291 AGTTGGTGGCAACCTTTTCAAAAGTCTACAAAAGTT-AGTGGCAACCTTTTCAAAGTCTACACG
1 AGTTGGTGGCAACCTTTTC-AAAGTCAACACGAGTTGA-TGGCAACCTTTTCAAAGTCCACACG
* * * * * * * *
110354 AGTTGGTGACAACCTTTTTATAGTCTATACAAGTT-ATTGGCAACCTTTTTAAAAG-CCTATACG
1 AGTTGGTGGCAACCTTTTCAAAGTCAACACGAGTTGA-TGGCAACC-TTTTCAAAGTCC-ACACG
* * * * * * * *
110417 AGTTAGTGGCAACATTTTCAAAATCCCATATGAGTTGGA-GGCAACC-TTTCAAAATCCCACATG
1 AGTTGGTGGCAACCTTTTCAAAGT-CAACACGAGTT-GATGGCAACCTTTTCAAAGT-CCACACG
* * * * * * * * * * * *
110480 AGGTAGTAGCAATCTTTTCAAAAGCCTACACAAGTTGGTGGTAAGCTTTGCAAATGGT-CACAGG
1 AGTTGGTGGCAACCTTTTC-AAAGTCAACACGAGTTGATGGCAACCTTTTCAAA--GTCCACACG
* * * * * * *
110544 AATTGGTGGCAACCTTTTCCAAAGCCCAA-ACGAGTTG-TCGGCAACCTTGTAAAAG-CTGATAG
1 AGTTGGTGGCAACCTTTT-CAAAG-TCAACACGAGTTGAT-GGCAACCTTTTCAAAGTC-CACAC
110606 G
62 G
* * * * * * * *
110607 AGTTGGTGGGAACCTTTTCAAAAATCTACATGAGTTGGTAGCAACCTTTTCAAAAATTCACACG
1 AGTTGGTGGCAACCTTTTC-AAAGTCAACACGAGTTGATGGCAACCTTTTC-AAAGTCCACACG
* * * * *
110671 AGTTGGTGGTAACTTTTTCAAAGTCCACACGAGTTGATGGCAACC-TTTCAAAAGTCCATAAG
1 AGTTGGTGGCAACCTTTTCAAAGTCAACACGAGTTGATGGCAACCTTTTC-AAAGTCCACACG
** * * * * *
110733 AGTTTATGGCAGCCTTTTCAAAAGCCCAAAAGCCTACACGAATTGGTGGCAACCATTTCAAAGTC
1 AGTTGGTGGCAACCTTTTC-AAAG-TC---A----ACACGAGTTGATGGCAACCTTTTCAAAGTC
* *
110798 TACATG
57 CACACG
** * * * *** *
110804 AGTTGGTGGCAACCTTTTCAAAAGTTTAGAAGAGTTGGTAATAACCTTTTCAAAAG-CTCACATG
1 AGTTGGTGGCAACCTTTTC-AAAGTCAACACGAGTTGATGGCAACCTTTTC-AAAGTC-CACACG
* * * * * * *
110868 AGTTGGTGACAACCTTTTTAAAGTCCACACAAGTTGTTGGTAACCTTTTCAAA-TGCTCGCACG
1 AGTTGGTGGCAACCTTTTCAAAGTCAACACGAGTTGATGGCAACCTTTTCAAAGT-C-CACACG
* * * * * * * * *
110931 AGTTGTTGGCAACCCTTTCAAAATCCTACATGAGTTGGTGGTAACTTTTTCAAAATCCCACACG
1 AGTTGGTGGCAACCTTTTCAAAGT-CAACACGAGTTGATGGCAACCTTTTCAAAGT-CCACACG
* * * * * *
110995 AGTTGGTTGCAACCTTTTAAAAGGCCCACAC-AGTT-AGTGGTAACCTTTTCAAAAATCCACACG
1 AGTTGGTGGCAACCTTTTCAAA-GTCAACACGAGTTGA-TGGCAACCTTTTC-AAAGTCCACACG
* * * * * * * **
111058 AGTTGGAGTCAACCTTTTTAAAAGCTC-ACAAGAGTTGGTGGCAACCTTTTCAAATTTCACATA
1 AGTTGGTGGCAACC-TTTTCAAAG-TCAACACGAGTTGATGGCAACCTTTTCAAAGTCCACACG
** ** ** * * *
111121 AGTTTTTGGC-ACCATAGTCAAAGTCTAACA--TTTTCAGACGCTCACACATCTTGGTAGCAACC
1 AGTTGGTGGCAACC-TTTTCAAAGTC-AACACGAGTT--GATG-GCA-AC--CTT--T-TCAA--
** **
111183 TTTCCAAAGTCTATAT
53 AGTCC--A--C-A-CG
** * * * * * * ** * *
111199 AGCTTGGTGGC-ACTACAGTT-GAAGTCCACTCAAGTTGGTGGTAATATTTTCGAAAGCCCACAT
1 AG-TTGGTGGCAAC--CTTTTCAAAGTCAACACGAGTTGATGGCAACCTTTTC-AAAGTCCACAC
111262 G
62 G
* * * * * *
111263 AGTTGTTGGCAACCTTTTCAAAAGCCCACACGAGTTGGTGGCAGCCTTTTTAAAAG-CCTACACG
1 AGTTGGTGGCAACCTTTTC-AAAGTCAACACGAGTTGATGGCAACC-TTTTCAAAGTCC-ACACG
* ** * * * * * * * *
111327 AGTTGATGATAACATTTTTAAAAGCCCACACCAGTTGATGGTAACCTTTTCAATGTCCACATG
1 AGTTGGTGGCAAC-CTTTTCAAAGTCAACACGAGTTGATGGCAACCTTTTCAAAGTCCACACG
* * * *
111390 AGTTGGTGGCAACCTTTTCAAAG-AACACACAAGTT-AGTGGCAACCATTTCAAAGTCCACATG
1 AGTTGGTGGCAACCTTTTCAAAGTCA-ACACGAGTTGA-TGGCAACCTTTTCAAAGTCCACACG
* ** * * * * *
111452 AGTTGGTGGCAATCTTTTCAAAAG-CTTGCACTAGTTGTTGGCAGCTTTTTTAAAAG-CTCACAC
1 AGTTGGTGGCAACCTTTTC-AAAGTC-AACACGAGTTGATGGCAAC-CTTTTCAAAGTC-CACAC
111515 G
62 G
* * * * * *
111516 GGTTGATGGCAACCTTTTCAAAGTCCACATGAGTTG-GGGCAACCTTTTCAAAGCCCACACG
1 AGTTGGTGGCAACCTTTTCAAAGTCAACACGAGTTGATGGCAACCTTTTCAAAGTCCACACG
* * * * * * * * * *
111577 AGTTAGTGGTAACCTTTTCAAAGTCCACACGAGTTGGTGGTAACATTTTAAGAAGCCCAAACT
1 AGTTGGTGGCAACCTTTTCAAAGTCAACACGAGTTGATGGCAACCTTTTCA-AAGTCCACACG
* * * *
111640 AGTTGGTGGCAACCATTTCAATGTCCACACGAGTTGGTGGCAACCTTTTCAAAAG-CTCACACG
1 AGTTGGTGGCAACCTTTTCAAAGTCAACACGAGTTGATGGCAACCTTTTC-AAAGTC-CACACG
* * * * * * * * * *
111703 ATTTGGTGGTAAACTTTTTAAAGGCTTACACGAGTTGGTGGAAACCATTTCAAAATCCACACG
1 AGTTGGTGGCAACCTTTTCAAAGTC-AACACGAGTTGATGGCAACCTTTTCAAAGTCCACACG
* * * * * * * * *
111766 AGTTGATAGAAACCTTTT-AGAAGTCCATAAGAGTTGGTGGCAAACTTTTCAAAAGCCCAAAAGC
1 AGTTGGTGGCAACCTTTTCA-AAGTCAACACGAGTTGATGGCAACCTTTT--------C-AAAGT
111830 CCACACG
56 CCACACG
* * * ** * *
111837 AGTTGGTGGCAACCATTTCAAAGTCCACACGAGTTGGTGTTAACCTTTTCAAAAGTCTACA-A
1 AGTTGGTGGCAACCTTTTCAAAGTCAACACGAGTTGATGGCAACCTTTTC-AAAGTCCACACG
* * * * * * *
111899 ATATTCGTGGCAACCTTTTCAAAGTCCACACAAGTTGATGACAACCTTTTCAAAGTCCATACA
1 A-GTTGGTGGCAACCTTTTCAAAGTCAACACGAGTTGATGGCAACCTTTTCAAAGTCCACACG
* * * * * * * * * *
111962 AGTTGTTGGCAACCTTTTCAAAATGCCATACGAGTTGGTGGTAACTTTTTCAAAATCTTACATG
1 AGTTGGTGGCAACCTTTTCAAAGT-CAACACGAGTTGATGGCAACCTTTTCAAAGTC-CACACG
* * * * * * * * *
112026 AGTTGGTAGCAAACTTTTCAAAATCCCACAAGAGTTGGTAGG-AACATTTTCAAAAGTCTATGA-
1 AGTTGGTGGCAACCTTTTCAAAGT-CAACACGAGTTGAT-GGCAACCTTTTC-AAAGTCCA-CAC
112089 G
62 G
** * * * * ** * *
112090 AGTTGGTCACAACCTTTTCAAAAGCCCATACGAGTTGGTGATAACTTTTTCAAAGTCCACACA
1 AGTTGGTGGCAACCTTTTC-AAAGTCAACACGAGTTGATGGCAACCTTTTCAAAGTCCACACG
* * * * * ** *
112153 AATTGTTGGCAACCTTTTCAAAAG-CTAACACAAGTTGGTGGCAACCTTTTCAAAATCTTGCATG
1 AGTTGGTGGCAACCTTTTC-AAAGTC-AACACGAGTTGATGGCAACCTTTTCAAAGTC-CACACG
* * * * * *
112217 AGTTGGTGGTAACC-TTTCAAAATCCCACACGAGTTGGTAGCAACCTTTTCAAAAG-CCTATA-G
1 AGTTGGTGGCAACCTTTTCAAAGT-CAACACGAGTTGATGGCAACCTTTTC-AAAGTCC-ACACG
* * * * * * * * *
112279 AAGTTGG-CGCTAAGCTTTGCAAATGGCCATACGAGTTGGTGGCAACCTTTTCAAAAATCTACAC
1 -AGTTGGTGGC-AACCTTTTCAAA-GTCAACACGAGTTGATGGCAACCTTTTC-AAAGTCCACAC
112343 G
62 G
** ** * *
112344 AGTTAATGGCAACAATTTCAAAGTTC-ACACGAGTTGATTGCAACC-TTTCAAAAGTCCACAAG
1 AGTTGGTGGCAACCTTTTCAAAG-TCAACACGAGTTGATGGCAACCTTTTC-AAAGTCCACACG
* * * * * *
112406 AATTGGTGGCAAGCTTTTAAAAAGCCCAATAGCTCACATGAATTTG-TGGCAACCATTTCAAAGT
1 AGTTGGTGGCAACCTTTT-CAAAG-TC-A-A---CAC--G-AGTTGATGGCAACCTTTTCAAAGT
112470 CCACACG
56 CCACACG
* * * * * *
112477 AGTTGGTGGCAACATTTTCAAAAGTCTACAAGAGTTGGTGGCAACCATTTTAAAAG-CTCACAGG
1 AGTTGGTGGCAACCTTTTC-AAAGTCAACACGAGTTGATGGCAACC-TTTTCAAAGTC-CACACG
* * * * * * *
112541 AGTTGGTGACAACCTTTTCAAAGTCCATACAAGTTGTTGGCAACCTTTTTAAAGTCCACACA
1 AGTTGGTGGCAACCTTTTCAAAGTCAACACGAGTTGATGGCAACCTTTTCAAAGTCCACACG
* * * * * * * * * *
112603 AGTTGTTGACAACCCTTTCAAAATCTCACATGAGTTGGTGGCAACTTTTTTAAAATCCCACACG
1 AGTTGGTGGCAACCTTTTCAAAGTC-AACACGAGTTGATGGCAACCTTTTCAAAGT-CCACACG
* * * * * * * *
112667 AATTGGTAGCAACCTTTTCAAAGGCCCACACGAGTTGGTGGTAACTTTTTCAAAAATCCACACG
1 AGTTGGTGGCAACCTTTTCAAA-GTCAACACGAGTTGATGGCAACCTTTTC-AAAGTCCACACG
* * * * * * * * **
112731 AGTTGGTGGCATCCTTTTTAAAAGCCCAGATGAGTTGGTGGCAACCTTTTTCAAATTTTACACG
1 AGTTGGTGGCAACC-TTTTCAAAGTCAACACGAGTTGATGGCAACC-TTTTCAAAGTCCACACG
* * * * * * * *
112795 AGTTTGTGGTAACATTTTCGAAAGCCCACACGAGTT-ATTGGTAACATTTTCAAAAG-CCACATG
1 AGTTGGTGGCAACCTTTTC-AAAGTCAACACGAGTTGA-TGGCAACCTTTTC-AAAGTCCACACG
* * * * * *
112858 AGATGGTAGCAACCTTTTTAAAAG-CACACATGAGTTGATGGCAACCTTTTAAAAGTCCACATG
1 AGTTGGTGGCAACC-TTTTCAAAGTCA-ACACGAGTTGATGGCAACCTTTTCAAAGTCCACACG
* * * * * * * **
112921 AGTTGGTGGCAACCTTTTCAAAGCCCATACAAGTT-AGTGGAAACCATTTCAAAGTCCGCATA
1 AGTTGGTGGCAACCTTTTCAAAGTCAACACGAGTTGA-TGGCAACCTTTTCAAAGTCCACACG
** * *** * * * * * *
112983 AGTTGGTGGCAATTTTTTCAAAAGCCTGTACTAGTTGTTGGCAGCCTTTTTAAATGCCCACAAG
1 AGTTGGTGGCAACCTTTTC-AAAGTCAACACGAGTTGATGGCAACCTTTTCAAA-GTCCACACG
* ** * * ** * *
113047 GGTTGAAGGCAACCTTTTCAAAGTCCACACAAGTTGGGGGTAACCTTTTCAAAGCCCACACG
1 AGTTGGTGGCAACCTTTTCAAAGTCAACACGAGTTGATGGCAACCTTTTCAAAGTCCACACG
* * *** *
113109 AGTTGGTGGCAACCTTTTAAAAAGCCCAA-AATTGTT-AGGGACAA-CTATTTCAAAGTCCACAC
1 AGTTGGTGGCAACCTTTT-CAAAG-TCAACACGAGTTGATGG-CAACCT-TTTCAAAGTCCACAC
*
113171 A
62 G
* * * * * * * *
113172 AGTTGATAGCAACCCTTTAAAAGTCCACAAGAGTTGGTGGCAAACTTTTCAAAAGCCTAAAAGCT
1 AGTTGGTGGCAACCTTTTCAAAGTCAACACGAGTTGATGGCAACCTTTTC-AAAG--T-----C-
*
113237 CACATG
57 CACACG
* * * * ** * * * **
113243 AATTGGTGGTAACCATTTCAAAGTTC-ACACGAATTGGCGGTAACTTTTTCAAAAGTCTACAAA
1 AGTTGGTGGCAACCTTTTCAAAG-TCAACACGAGTTGATGGCAACCTTTTC-AAAGTCCACACG
** * * * *
113306 AGTTCATGGCAACCTTTTCAAAGTCCACACGAGTTGCTGGCAACCTTTTCAAAGTCCATACA
1 AGTTGGTGGCAACCTTTTCAAAGTCAACACGAGTTGATGGCAACCTTTTCAAAGTCCACACG
* * * * * *
113368 AGTTGTTGGCAACCTTTTCAAAAGGCCACACGAGTTGGTGGTAACCTTTTC-AAGATCTCACATG
1 AGTTGGTGGCAACCTTTTC-AAAGTCAACACGAGTTGATGGCAACCTTTTCAAAG-TC-CACACG
* * * * * * * * * *
113432 AGTTGGTAGCAAACTTTTCAAAATCCCACATGAGTTGATAGAAAACTTTTCAAAATCCACACA
1 AGTTGGTGGCAACCTTTTCAAAGT-CAACACGAGTTGATGGCAACCTTTTCAAAGTCCACACG
* *
113495 ATTTGTTGGCAACCTTTTCAAAGTCCAACATTTTCAGAAGTTCACATGAGTTGGTGGCAACCTTT
1 AGTTGGTGGCAACCTTTTCAAAGT-CAACA----C-G-AG-T----TGA-----TGGCAACCTTT
*
113560 TCAAAGTCCACATG
49 TCAAAGTCCACACG
* * * * * * * * * *
113574 AGTTGATGGCAACGTTTTCAAAAGCCCACACGATTTGGTGGCAGCCTTTTTTAAAGCCCACATG
1 AGTTGGTGGCAACCTTTTC-AAAGTCAACACGAGTTGATGGCAACC-TTTTCAAAGTCCACACG
* * * * * *
113638 AGTTGATGACAACCTTTTTAAAGTTC-ACACGAGTTGGTGACAACCTTTTTAAAAGCCCAAAAGC
1 AGTTGGTGGCAACCTTTTCAAAG-TCAACACGAGTTGATGGCAACC-TTTT-------C-AAAGT
113702 CCACACG
56 CCACACG
* * * * * *** * *
113709 AGTTGGTAGCAAGCTTTTCAAAAGCCTACATGAGTT-AGTAATAACATTTTCAAAGTCAACAC-
1 AGTTGGTGGCAACCTTTTC-AAAGTCAACACGAGTTGA-TGGCAACCTTTTCAAAGTCCACACG
* * * * * * * *
113771 ACGTTGTTGGCAACCTTTTCAAAAGCCCACACGAGTTGGTGGTAACATTTTGAAAATCGCACACG
1 A-GTTGGTGGCAACCTTTTC-AAAGTCAACACGAGTTGATGGCAACCTTTTCAAAGTC-CACACG
* ** * * * * * *
113836 AGTTGGTTGCAACCTTTTCAAAAAC-CCATAGAGTTGGTGACAACCTCTTCAAAGTCCACACA
1 AGTTGGTGGCAACCTTTTCAAAGTCAACA-CGAGTTGATGGCAACCTTTTCAAAGTCCACACG
* * * * * * * * *
113898 AGTTGTTAGAAACCTTTTCAAAAG-CTTACACAAGTTGGTGGCAACCTTTTTAAAATCTCACTCG
1 AGTTGGTGGCAACCTTTTC-AAAGTC-AACACGAGTTGATGGCAACCTTTTCAAAGTC-CACACG
* * * * * *
113962 AGTTGGTGGC-GCTCTTTTCAAAATCTAACATGAGTTGGTAGCAACCTTTTCAAAGGCCCACACG
1 AGTTGGTGGCAAC-CTTTTCAAAGTC-AACACGAGTTGATGGCAACCTTTTCAAA-GTCCACACG
* * * * * * * *
114026 AGTTGGTGGTAACCATTTCAAAAGCCCACATGAGTTGGTGGCAACCTTTGCAAAAGTCCACAGG
1 AGTTGGTGGCAACCTTTTC-AAAGTCAACACGAGTTGATGGCAACCTTTTC-AAAGTCCACACG
* * * * * * * * *
114090 AGTTGGTGGCAACATTTCCAAGAGCCCACAGGAGTTGGTGGCAACCTTTACAAAGTTCACCCG
1 AGTTGGTGGCAACCTTTTCAA-AGTCAACACGAGTTGATGGCAACCTTTTCAAAGTCCACACG
* * ** * * *
114153 AGTTTGTGGCACCCTAGTCAAAGTCCACACGAGTTGGTGGCAACCTTTTCAAAAATCCACACG
1 AGTTGGTGGCAACCTTTTCAAAGTCAACACGAGTTGATGGCAACCTTTTC-AAAGTCCACACG
* * * * * ** *
114216 AGTTGGTGGTAA-CTATTTCATAGTCTACACGAGTTCATGCCAA-CAGTTCAAAAGTCCACAGG
1 AGTTGGTGGCAACCT-TTTCAAAGTCAACACGAGTTGATGGCAACCTTTTC-AAAGTCCACACG
* * * * *
114278 AGTTGGTGGCAACTTTTTCAAAAGCCCAAAAGCCCTTACGAATTGGTGGCAACCATTTCAAAGTC
1 AGTTGGTGGCAACCTTTTC-AAAG-TC--AA---C--ACGAGTTGATGGCAACCTTTTCAAAGTC
114343 CACACG
57 CACACG
* * * * * *
114349 AGTTGGTGGCAACCTTTTCAAAGGTCTAGAAGAATTGGTGGCAACCTTTTCAAAAG-CCTAGACG
1 AGTTGGTGGCAACCTTTTCAAA-GTCAACACGAGTTGATGGCAACCTTTTC-AAAGTCC-ACACG
* * * * * *
114413 AGTTGGTGACAACCTTTTCAAAGTCCACACAAGTTGTTAGCAACCTTTTCAAAATCCCACACG
1 AGTTGGTGGCAACCTTTTCAAAGTCAACACGAGTTGATGGCAACCTTTTCAAAGT-CCACACG
* * * * * *
114476 AGTTGGTGGTAACCTTTTCAAAATCACACACGAGTTGGTAGCAACCTTTGTCAAA-ACCATA-G
1 AGTTGGTGGCAACCTTTTCAAAGTCA-ACACGAGTTGATGGCAACCTTT-TCAAAGTCCACACG
* * * * * * * *
114538 AGTTGGTGACAAACTTTTCAAACTCTACACAAGTTGTTAG-AAGCTTTTTCAAAAGTCCACACG
1 AGTTGGTGGCAACCTTTTCAAAGTCAACACGAGTTGATGGCAA-CCTTTTC-AAAGTCCACACG
* * * * * * * * * * * *
114601 AGTTAGTGACAACCTTTCCAACGTCCACACAAGTTGGTGGCAGCTTTTTTAAAAGCCCACACA
1 AGTTGGTGGCAACCTTTTCAAAGTCAACACGAGTTGATGGCAAC-CTTTTCAAAGTCCACACG
* * * * * * * * * *
114664 AGTTGGTGGCAA-CTTGTCCAAAATCCCACTCGATTTGGTCGTAACCTTTTCAAAATCTGACACG
1 AGTTGGTGGCAACCTT-TTCAAAGT-CAACACGAGTTGATGGCAACCTTTTCAAAGTC-CACACG
* ** * * * * * *
114728 AGTAGGTAACAACC-TTTCAAAGACCCACACGAGTTGGTGGTAACCATTTCAAAAG-CTCACATG
1 AGTTGGTGGCAACCTTTTCAAAG-TCAACACGAGTTGATGGCAACCTTTTC-AAAGTC-CACACG
* * * * * * *
114791 AGTTGGTGGCAACCTTTGCAAAAGGCCACACGAGTTGGTGACAACCTTTTCAAGAG-CTCATAGG
1 AGTTGGTGGCAACCTTTTC-AAAGTCAACACGAGTTGATGGCAACCTTTTCAA-AGTC-CACACG
* * * * * * * * *
114855 AGTCGGTGACAACCTTTTCAAAAATCCACACAAGTT-AGTTGTAA-C-TATAAAAGTCCACACG
1 AGTTGGTGGCAACCTTTTC-AAAGTCAACACGAGTTGA-TGGCAACCTTTTCAAAGTCCACACG
** * * * * * *
114916 AGTTAATGCCAACCTTTTAAAAGTCCACAAGAGTTGGTGGCAACCTTTTCAAAAGCCCAAAAGCC
1 AGTTGGTGGCAACCTTTTCAAAGTCAACACGAGTTGATGGCAACCTTTT--------C-AAAGTC
114981 CACACG
57 CACACG
* * * * * * * * * * * * *
114987 AATTAGTGACAACCATTTCAAAGTCCATATGGGTTGGTGACAACCTTTTCAAAAGTCTAGAAG
1 AGTTGGTGGCAACCTTTTCAAAGTCAACACGAGTTGATGGCAACCTTTTC-AAAGTCCACACG
* * * * * * *
115050 AGTTGGTGGCAA-CTATTTCAAAATCCTACACGAGTTGGTAGCAACCTTTTCAAAGGCCCATATG
1 AGTTGGTGGCAACCT-TTTCAAAGT-CAACACGAGTTGATGGCAACCTTTTCAAA-GTCCACACG
* * * * * * * *
115114 AGTTGGTGGTAACCTTTTCAAAATCCCACATGAGTTGGTGGAAAACTTTTCAAAATCACACACG
1 AGTTGGTGGCAACCTTTTCAAAGT-CAACACGAGTTGATGGCAACCTTTTCAAAGTC-CACACG
* * * ** *
115178 AGTTGGTGGCAACCTTTTCAAAATCCACACAAGTTTTTGGCAACCTTTTCCAAAG-CTCACGCG
1 AGTTGGTGGCAACCTTTTCAAAGTCAACACGAGTTGATGGCAACCTTTT-CAAAGTC-CACACG
* * * * * *
115241 AGTTGGTAGCAACCTTTTCAAAGGTCCACATGAGTTGGTGGGAACCTTTTCAAAAGTCCACACT
1 AGTTGGTGGCAACCTTTTCAAA-GTCAACACGAGTTGATGGCAACCTTTTC-AAAGTCCACACG
* * * * * ** * *
115305 AGTGGGTAGCAACCTTTCCAAAGCCCACAAAAGTTGTTGGCAACCTTTTCAAAAG-CCACATG
1 AGTTGGTGGCAACCTTTTCAAAGTCAACACGAGTTGATGGCAACCTTTTC-AAAGTCCACACG
* * * * * * * *
115367 AGTT-GTGACATCC-TTTCAAAATCCTACATGAGTTGGTAGCAACCTTTTCAAAAG-CCTGCACG
1 AGTTGGTGGCAACCTTTTCAAAGT-CAACACGAGTTGATGGCAACCTTTTC-AAAGTCC-ACACG
** * * * * * * * * * *
115429 AGTTGGTGTTAAGCTTTGCAAATGGCCACACAAGTTGGTGGCAACTTTTTCAAAGCCCAAATG
1 AGTTGGTGGCAACCTTTTCAAA-GTCAACACGAGTTGATGGCAACCTTTTCAAAGTCCACACG
* * * * * * *
115492 AGTTGTTGGTAACCTTTTCAAAAG-CTGACAGGAGTTGGTGGCAACCTTTTCAAAAATCTACACG
1 AGTTGGTGGCAACCTTTTC-AAAGTC-AACACGAGTTGATGGCAACCTTTTC-AAAGTCCACACG
* * * * * * *
115556 AGTTGGTAGCAACTTTTTCAAAAATTC-ACATGTGTTGGTGGCAA-CTATTTTAAAGTCCACACG
1 AGTTGGTGGCAACCTTTTC--AAAGTCAACACGAGTTGATGGCAACCT-TTTCAAAGTCCACACG
* * * * * *** ** *
115619 TGTTGCTAGAAACC-TTTCAAAAATCCGTAAAAGTTGCTGGCAACCATTTTAATAGCCCAAAAGT
1 AGTTGGTGGCAACCTTTTC-AAAGTCAACACGAGTTGATGGCAACC--TTT--T----C-AAAGT
*
115683 CCACACA
56 CCACACG
* * * * * * * * * * **
115690 AATTGGTAGCAACCATTTCAAAGCCCACATGAGTTGGTGGTAACTTTTTCAAAAGTCTACAAT
1 AGTTGGTGGCAACCTTTTCAAAGTCAACACGAGTTGATGGCAACCTTTTC-AAAGTCCACACG
* * *
115753 AGTTGGTGGCAAACTTTTCAAAAGTCCACATGAGTT-A-GCAGCAACC-TTT---AG-CTCACAC
1 AGTTGGTGGCAACCTTTTC-AAAGTCAACACGAGTTGATG--GCAACCTTTTCAAAGTC-CACAC
*
115811 T
62 G
* * * * ** * * * * * *
115812 AGTTAGCGGTAA-CTTTTGGAGAAACCCACACGAGTTGGTGGTAACCTTTTTAAAAGCCCACAGG
1 AGTTGGTGGCAACCTTTT-CA-AAGTCAACACGAGTTGATGGCAACC-TTTTCAAAGTCCACACG
* ** ** * *
115876 AGTTAGTGGTTACCTTTTCAAAGTTC-ACACGAGGTTG-TGGC-ACCATAGTCAAAGTCTATACG
1 AGTTGGTGGCAACCTTTTCAAAG-TCAACACGA-GTTGATGGCAACC-TTTTCAAAGTCCACACG
* * * * * ** * * * *
115938 AGTTGGTAGTAACTTTTTCAAAAGCCTACACTTGTTGGTAGTAACCTTTTCAAAAGCCCACACG
1 AGTTGGTGGCAACCTTTTC-AAAGTCAACACGAGTTGATGGCAACCTTTTC-AAAGTCCACACG
* * * *
116002 AGTTGGTGGCAACCATTTCAAAGTCCACACGAGTTGATGGCAACC-TTTCAAAAGTCTACAAG
1 AGTTGGTGGCAACCTTTTCAAAGTCAACACGAGTTGATGGCAACCTTTTC-AAAGTCCACACG
* * * * * *
116064 AGTTGGTGGCAACTTTTTTAAAAGCCCAAAAGCCCACAAGATTTGGA-AGCAA-CTATTTCAATG
1 AGTTGGTGGCAAC-CTTTTCAAAG-TC--AA---CAC--GAGTT-GATGGCAACCT-TTTCAAAG
116127 TCCACACG
55 TCCACACG
* * * * * * * *
116135 AGTTGGTGGTAACCTTTTGAAAAGTCTACAAGAGCT-AGGGGCAACTTTTTCAAAAGCCCACACG
1 AGTTGGTGGCAACCTTTT-CAAAGTCAACACGAGTTGA-TGGCAACCTTTTC-AAAGTCCACACG
** * * * * *
116199 AGTTGGTAACAACCTCTTT-AAAGTCTACACAAGTTGTTGGCAACCTTTTTTTAAAAAGCCCACA
1 AGTTGGTGGCAACCT-TTTCAAAGTCAACACGAGTTGATGGCAACC---TTTT-CAAAGTCCACA
116263 CG
61 CG
* ** * * * * *
116265 AGTTAGTAACAACCTTTTCAAAGTCAACA-TATGTTGTTAGCAACCTTTTCAAAAGCCCACATG
1 AGTTGGTGGCAACCTTTTCAAAGTCAACACGA-GTTGATGGCAACCTTTTC-AAAGTCCACACG
* * * * * * * ***
116328 AGTTGGTAGTAACTTTTTCAAAATCACACATGAGTTGGTAGCAACCTTTTCAAAAAGCACA-G
1 AGTTGGTGGCAACCTTTTCAAAGTCA-ACACGAGTTGATGGCAACCTTTTCAAAGTCCACACG
* * * * * * * * * * ** *
116390 AGTTGGTGACAACCTTTCCAAAATCCTACTCAAGTTGGTCGCAACATTTTCAAAATTTGACATG
1 AGTTGGTGGCAACCTTTTCAAAGT-CAACACGAGTTGATGGCAACCTTTTC-AAAGTCCACACG
* * * * * * * *
116454 AGTTGGTAGCAACC-TTTCAAAGGCCCACACAAGTTGGTGGTAACCATTTCAAAAGCCCACACG
1 AGTTGGTGGCAACCTTTTCAAA-GTCAACACGAGTTGATGGCAACCTTTTC-AAAGTCCACACG
* * * * * * * * * *
116517 AGTTAGTGGTAACCATTTCAAAAGCCCACATGGGTTGGTGGCAACCTTTT-AAAGAGCTCACAAG
1 AGTTGGTGGCAACCTTTTC-AAAGTCAACACGAGTTGATGGCAACCTTTTCAAAG-TC-CACACG
* * * * *
116581 AGTTGGTGGCAACCTTTTCAAGAGCTC-ATAGGAGTTGGTGGCAACCTTTTCAAAAATCCACATG
1 AGTTGGTGGCAACCTTTTCAA-AG-TCAACACGAGTTGATGGCAACCTTTTC-AAAGTCCACACG
* * * * * * * **
116645 TGTTAGTGGTAA-CTATTTCAAAGTCTACACTAGTTAAT-GCTAACC-TTTCAAAAGTCCATAAT
1 AGTTGGTGGCAACCT-TTTCAAAGTCAACACGAGTTGATGGC-AACCTTTTC-AAAGTCCACACG
* * * * * *
116707 AGTTGGTGGTAACCTTTTCAAAAGCCTACGA-GAGTTGGTCGTAACCTTTTCAAAAGCCTACTTA
1 AGTTGGTGGCAACCTTTTC-AAAGTCAAC-ACGAGTTGATGGCAACC-TTT--------T-C--A
**
116771 AAGTCCACATA
52 AAGTCCACACG
* * ** * * * *
116782 AGTTGTTGGCAACCTTTTCAAAAACTC-ACATAAGTTGGTGGAAACCTTTTCAAAATCCCACATG
1 AGTTGGTGGCAACCTTTTC--AAAGTCAACACGAGTTGATGGCAACCTTTTCAAAGT-CCACACG
* * * * * * **
116846 AGTTGATAGCAACCCTTTCAAAAGTTC-ACACGAGTTGCTGACAACCCTTTCAAAGTCCACATA
1 AGTTGGTGGCAACCTTTTC-AAAG-TCAACACGAGTTGATGGCAACCTTTTCAAAGTCCACACG
* * ** * * * * * * * *
116909 AGTTGTTTGCAATATTTTCAGATGCCTACACAAGTTGGTGGTAATCTTTTCAATG-CCTACACG
1 AGTTGGTGGCAACCTTTTCA-AAGTCAACACGAGTTGATGGCAACCTTTTCAAAGTCC-ACACG
* * * * * * * * *
116972 AGTTGTTGGCAACCTTTTTAAAATCTCACACGAGTTGGTGGTAACCTTTTTAAAAG-CTCGCATG
1 AGTTGGTGGCAACCTTTTCAAAGTC-AACACGAGTTGATGGCAACC-TTTTCAAAGTC-CACACG
* * * ** * *
117036 AGTTAGTGGTAACCTTTTCCAAGTTC-ACACGAGTTTG-TGGC-ACCATAGTCAAAGTCTACACA
1 AGTTGGTGGCAACCTTTTCAAAG-TCAACACGAG-TTGATGGCAACC-TTTTCAAAGTCCACACG
* * * * * * * * * *
117098 AGTTGGTAGTAACTTTTTTAAAAGCCTACA-TATGCTGCTGGTAACCTTTTCAAAAG-CCACACG
1 AGTTGGTGGCAAC-CTTTTCAAAGTCAACACGA-GTTGATGGCAACCTTTTC-AAAGTCCACACG
* * * * *
117161 AGTTGGTGACAACCATTTCAAAGTCCACACGAGTTGATGGCAACC-TTTCAAAAGTCTACAAG
1 AGTTGGTGGCAACCTTTTCAAAGTCAACACGAGTTGATGGCAACCTTTTC-AAAGTCCACACG
* * * * *
117223 AGTTTGTGGCAACCTTTTCAAAAGCCCAAAAGCCCACAAGAGTTGGA-AGCAA-CTATTTTAATG
1 AGTTGGTGGCAACCTTTTC-AAAG-TC--AA---CAC--GAGTT-GATGGCAACCT-TTTCAAAG
*
117286 TCCATACG
55 TCCACACG
* * * * * * *
117294 AGTTGGTGGCAACCTTTTGAAAAGTCTACAAGAGTT-AGGGTCCATCTTTTCAAAAGCCCACACG
1 AGTTGGTGGCAACCTTTT-CAAAGTCAACACGAGTTGATGG-CAACCTTTTC-AAAGTCCACACG
** * * * * * *
117358 AGTTGGTAACAACCTTTTCAAAGTCTACACAAGTTGTTGGCAACCTTTTTTTAAAAAGCCCACAT
1 AGTTGGTGGCAACCTTTTCAAAGTCAACACGAGTTGATGGCAACC---TTTT-CAAAGTCCACAC
117423 G
62 G
* *** ** * * *
117424 AGTTAGTAATAACCTTTTCAAAGTCAACATAAGTTGTTAGCAACCTTTTCAAAAGTCCACATG
1 AGTTGGTGGCAACCTTTTCAAAGTCAACACGAGTTGATGGCAACCTTTTC-AAAGTCCACACG
* * * * * **
117487 AGTTGGTAGTAACCTTTTCAAAATCACACACGAGTTGGTAGCAACCTTTTCAAAAACCACA-G
1 AGTTGGTGGCAACCTTTTCAAAGTCA-ACACGAGTTGATGGCAACCTTTTCAAAGTCCACACG
* * ** * * *** *
117549 AGTTGGTGACAACCTTTTCAAACTTTACACAAGTTGTTAAAAACTTTTTCAAAAGTCCACACG
1 AGTTGGTGGCAACCTTTTCAAAGTCAACACGAGTTGATGGCAACCTTTTC-AAAGTCCACACG
** * * * ** * * ** *
117612 AGTTAATGACAACCTTTTCAATGTCCACATAACTTGTTGGCAACCTTTTCAAAAACCCACACA
1 AGTTGGTGGCAACCTTTTCAAAGTCAACACGAGTTGATGGCAACCTTTTC-AAAGTCCACACG
* * * * * * * * *
117675 AGTTGGTGGCAACCATTCCAAAATCCCACTCGAGTTGGTCGCAACCTTTTCAAAATCTAACACG
1 AGTTGGTGGCAACCTTTTCAAAGT-CAACACGAGTTGATGGCAACCTTTTCAAAGTC-CACACG
* * * * * * *
117739 AGTTGGTAGCAACC-TTTCAAAGGCCCACACGAGTTGGTGGTAA-CTATTTCAAAATCCCACATG
1 AGTTGGTGGCAACCTTTTCAAA-GTCAACACGAGTTGATGGCAACCT-TTTCAAAGT-CCACACG
* * * * * *
117802 AGTTGGTGGCAACCTTTGCCAAAGTCCACACGAGTTGGTGGCAACCTTTTCAAAAGTCTAAAAG
1 AGTTGGTGGCAACCTTT-TCAAAGTCAACACGAGTTGATGGCAACCTTTTC-AAAGTCCACACG
* * * * * *
117866 AGTTGGTGGCAATCATTTCAAAAGCTC-ATACGAGTT-AGTAGCAACCTTTTCAAAGGCCCACAT
1 AGTTGGTGGCAACCTTTTC-AAAG-TCAACACGAGTTGA-TGGCAACCTTTTCAAA-GTCCACAC
117929 G
62 G
** * * * * * * * *
117930 AGTCAGTGGGAATCTTTTCAAAAGTCCACACGAGTTGGTAGCAACATTTTCAAAGCCCACATG
1 AGTTGGTGGCAACCTTTTC-AAAGTCAACACGAGTTGATGGCAACCTTTTCAAAGTCCACACG
* * * * * ** *
117993 AGTTGTTGGCAACCTTTTCAAAAGCCTACATGAGTTGGTAACAACC-TTTCAAAATCCTACACG
1 AGTTGGTGGCAACCTTTTC-AAAGTCAACACGAGTTGATGGCAACCTTTTCAAAGTCC-ACACG
* * * * * * * *
118056 AGTTGGTAGCAACCTTTTCAAAAGCCTACACGAGTTGGTGGTAAGCTTTGT-AAATGGCCACACA
1 AGTTGGTGGCAACCTTTTC-AAAGTCAACACGAGTTGATGGCAACCTTT-TCAAA-GTCCACACG
** * * ** *
118120 AGTTGGTGGCAAATTTTTCAAAGCCCAA-ATGAGTT-ATTGGCAACCTTTTCAAAACCCGACAGG
1 AGTTGGTGGCAACCTTTTCAAAG-TCAACACGAGTTGA-TGGCAACCTTTTCAAAGTCC-ACACG
** * * * * * *
118183 AGTTGGTGGTTACCTTTTCAAAAATCCACACGAGTTGGTGGGAACCTTTTCAAAAATTCACACG
1 AGTTGGTGGCAACCTTTTC-AAAGTCAACACGAGTTGATGGCAACCTTTTC-AAAGTCCACACG
* * * * * * **
118247 AGTTGGTGGTAA-CTATTTCAAAGTCCACATGAGTTGATAGCAACC-TTTCAAAAGTCTATAAA
1 AGTTGGTGGCAACCT-TTTCAAAGTCAACACGAGTTGATGGCAACCTTTTC-AAAGTCCACACG
* * * * * * * *
118309 AGTTGGTGGCAACCTTTTTAATAGCCCAAAAGCCCACACAAATTGGTGGTAACCATTTCAAAGCC
1 AGTTGGTGGCAACC--TTT--T----C-AAAGTCAACACGAGTTGATGGCAACCTTTTCAAAGTC
118374 CACACG
57 CACACG
* ** * * ** * * * * * **
118380 AGTTGATGATAACTTTTTTAAAAGTCTTCAAGAGTTGGTAGCAACTTTTTCAAAAGCCCACGTG
1 AGTTGGTGGCAAC-CTTTTCAAAGTCAACACGAGTTGATGGCAACCTTTTC-AAAGTCCACACG
** * * * * * * * * *
118444 AGTTAGG-ACCAACCTTTTCAAAATCTCACATGAGTAGATGGCAACATTTTTAAAATCCCATATG
1 AGTT-GGTGGCAACCTTTTCAAAGTC-AACACGAGTTGATGGCAACCTTTTCAAAGT-CCACACG
* * ** * * *
118508 AGTTGGTAGCAACCTTTTCAAAGGCTC-ACATGAGTTGGCGGTAACCTTTTCAGAAGTCCATATG
1 AGTTGGTGGCAACCTTTTCAAA-G-TCAACACGAGTTGATGGCAACCTTTTCA-AAGTCCACACG
** * * * * **
118572 AGTTGGTGATAACATTTTCAAAG-CCACACGAGTTGTTGTCAACCTTTTCAAAAG-CCTACGTG
1 AGTTGGTGGCAACCTTTTCAAAGTCAACACGAGTTGATGGCAACCTTTTC-AAAGTCC-ACACG
* * * * * * **
118634 AGTTGGTGGAAACTTTTTCAACTA-CCTACACAAGTTGGTGGCAACCTTTTCAAAGTGTACACG
1 AGTTGGTGGCAACCTTTTCAA--AGTCAACACGAGTTGATGGCAACCTTTTCAAAGTCCACACG
* * * ** * * * *
118697 AGTTAGTGGTAACCTTTTAAAAGGTTGACACGAGTTGGTGGTAATCATTTCAAAGTCCACACG
1 AGTTGGTGGCAACCTTTTCAAA-GTCAACACGAGTTGATGGCAACCTTTTCAAAGTCCACACG
* * * * * * *
118760 AGTTGATAGCAACCTTTCAAAACCCCAAAAGCCTACACGAGTTGGTGGTAACCTTTTCAAAAGTC
1 AGTTGGTGGCAACCTTT-------TC-AAAGTCAACACGAGTTGATGGCAACCTTTTC-AAAGTC
*
118825 TACGA-G
57 CAC-ACG
** * * ** * **
118831 AGTTGGTCACAACCTTTTCAAAAGCCCACACGAGTTGATAACAACCTTTTTAAAGTCCACATA
1 AGTTGGTGGCAACCTTTTC-AAAGTCAACACGAGTTGATGGCAACCTTTTCAAAGTCCACACG
** * * * *
118894 AGTTATTGGCAACCTTTCCAAAAGCTCATACA--AGTT-AGTGGCAACCTTTTCAAAATCTACAT
1 AGTTGGTGGCAACCTTTTC-AAAG-TCA-ACACGAGTTGA-TGGCAACCTTTTCAAAGTCCACAC
118956 G
62 G
* * * * **
118957 AGTTGGTAGCAACCTTTTCAAAAGCTC-ACAGGAGTTGGTGACAACCTTTTCAAAGTCCACATA
1 AGTTGGTGGCAACCTTTTC-AAAG-TCAACACGAGTTGATGGCAACCTTTTCAAAGTCCACACG
* * * *
119020 AGTTGTTGGCAACATTTTCAAAAGTCCACACGAGTTGGTGGCAACCTTTTCAAAG-CCTACACG
1 AGTTGGTGGCAACCTTTTC-AAAGTCAACACGAGTTGATGGCAACCTTTTCAAAGTCC-ACACG
* * * * *
119083 AGTTGTTGACAACCTTTTTAAAAGCTC-ACACGAGTTGGTGGTAA-CTTTTACAAAAAG-CCACA
1 AGTTGGTGGCAACC-TTTTCAAAG-TCAACACGAGTTGATGGCAACCTTTT-C--AAAGTCCACA
*
119145 CA
61 CG
* * * * * * * * * *
119147 AGTTAGTGGTAACCTTTTTAAAAGCCCATAGGAGTT-ACTGGTAACCTTTTCAATGTTCACACG
1 AGTTGGTGGCAACC-TTTTCAAAGTCAACACGAGTTGA-TGGCAACCTTTTCAAAGTCCACACG
* * ** * * * * * *
119210 GGTTTGTGGC-ACCATAGTCAAAGTCTACATGAGTTGGTAGTAACTTTTTCAAAAG-CCTACACG
1 AGTTGGTGGCAACC-TTTTCAAAGTCAACACGAGTTGATGGCAACCTTTTC-AAAGTCC-ACACG
* * * * * * * * * **
119273 TGTTGATGGTAACCTTTTCAAAAGCCCACACGAGTTGGTGGCAACCATTTGAATGTCCACATA
1 AGTTGGTGGCAACCTTTTC-AAAGTCAACACGAGTTGATGGCAACCTTTTCAAAGTCCACACG
* * * * *
119336 AGTTGATGGCAACC-TTTCAAAAGTCTACAAGAG-TCAGTGGCATCCATTTTAAAAGCCCAAAAG
1 AGTTGGTGGCAACCTTTTC-AAAGTCAACACGAGTTGA-TGGCAACC-TTTT-------C-AAAG
* * *
119399 CCCATAAG
55 TCCACACG
** * * * * * * * * *
119407 AGTTGGAAGCCA-CTATTTCAATGTCTACATGAGTTGGTGACAACCTTTTGAAAAGTCTACAAG
1 AGTTGGTGGCAACCT-TTTCAAAGTCAACACGAGTTGATGGCAACCTTTT-CAAAGTCCACACG
* * * * * *** * *
119470 AGTTGGTAGTAACCTTTTCAAAAGCCCACACGAGTTGGTAATAACCTTTTCAAAGTCTACACA
1 AGTTGGTGGCAACCTTTTC-AAAGTCAACACGAGTTGATGGCAACCTTTTCAAAGTCCACACG
* * * ** * * * *
119533 AGTTGTTGGCAACCTTTTCAAAAGCTC-ACACAAGTTGGTGATAACTTTTTCAAAATCTCGCATG
1 AGTTGGTGGCAACCTTTTC-AAAG-TCAACACGAGTTGATGGCAACCTTTTCAAAGTC-CACACG
* * * * * * * * * *
119597 AATTAGAGGTAACCTTTTCAAAATCACATAC-ATGTTGGTAGCAACCTTTTCAAAGGCCTCCACG
1 AGTTGGTGGCAACCTTTTCAAAGTCA-ACACGA-GTTGATGGCAACCTTTTCAAAGTCC-ACACG
** ** * * * * * **
119661 AGTTTATGATAACCTTTTCGATAGTCCACACGAGTTGGTGGCAACCTTTTCGAAGCCCACGTG
1 AGTTGGTGGCAACCTTTTC-AAAGTCAACACGAGTTGATGGCAACCTTTTCAAAGTCCACACG
* ** * * * * ** *
119724 AGTTGTTGGCAACCTTATAAAAAGTCTACATGAGTTGGTAGCAACCTTTTCAAAAACCCACATG
1 AGTTGGTGGCAACCTT-TTCAAAGTCAACACGAGTTGATGGCAACCTTTTC-AAAGTCCACACG
* * ** * *** *
119788 AGTTGGTAGCAACCTTTTCAAAACTGTACATGAGTT-AGTGGCAA-CTATTTCAAAGTCTGTAAG
1 AGTTGGTGGCAACCTTTTC-AAAGTCAACACGAGTTGA-TGGCAACCT-TTTCAAAGTCCACACG
** * * * *
119851 AGTTGACGGCAACC-TTTCAAAGTCCACAAGAGTTGGTGACAACCTTTTCAAAAGCCTAAAAACC
1 AGTTGGTGGCAACCTTTTCAAAGTCAACACGAGTTGATGGCAACCTTTTC-AAAG--T------C
119915 CACACG
57 CACACG
* * * * * * * * **
119921 AATTGGTGACAACCATTTT-GAAGTCTACACGAGTT-AGTGGTAACCTTTTTAAAATTGCACAAT
1 AGTTGGTGGCAACC-TTTTCAAAGTCAACACGAGTTGA-TGGCAACC-TTTTCAAAGTCCACACG
* * * * *
119984 AGTTGGTGGCAACCTTTTCAAAAGCCCACCCGAGTTGGTGACAACCTTTTCAAAGT-CA-AC-
1 AGTTGGTGGCAACCTTTTC-AAAGTCAACACGAGTTGATGGCAACCTTTTCAAAGTCCACACG
* * * * * * * *
120044 A-TTGTTGGCAACATTTTCAAAAGCCCAA-ATGAGTTGGTGGTAACCTTTTCAAAATCCCACATG
1 AGTTGGTGGCAACCTTTTC-AAAG-TCAACACGAGTTGATGGCAACCTTTTCAAAGT-CCACACG
* * * * * * * *
120107 AGTTGGTGGTAACTTTTTCAAAATCTTAA-ACGAATTGGTAGCAACCTTTTCAAAGGCCCACATG
1 AGTTGGTGGCAACCTTTTCAAAGTC--AACACGAGTTGATGGCAACCTTTTCAAA-GTCCACACG
*** * * * * * * *
120171 AGTTGGTTATAACATTTTCAAAATTCTACACGAGTTGTTGGCAACCTTTTTAAAAG-CTCGCATG
1 AGTTGGTGGCAACCTTTTC-AAAGTCAACACGAGTTGATGGCAACC-TTTTCAAAGTC-CACACG
* * * **
120235 -GTTTGGTGGTAACCTTTTCAAACTTC-ACACGCGTTTG-TGGC-ACCATAGTCAAAGTCCA-AC
1 AG-TTGGTGGCAACCTTTTCAAA-GTCAACACGAG-TTGATGGCAACC-TTTTCAAAGTCCACAC
120295 -
62 G
* **** * * ** * * * * * * ** *
120295 ATTTTCAAAAGCTCACACTAGTTGGATGGCATCATTTTTGAAGTTTAT--AAAAGTTAGTGGCAC
1 A-GTT-GGTGGC-AAC-CT-TTTCAAAGTCAACA----CG-AGTTGATGGCAACCTT--T-TCA-
120358 CATAGTCAAAGTCCACACG
52 -A-AGTC------CACACG
* * * * * * * * * *
120377 AGTTAGTGGCAACATTTTCAAAAGCCCACATGAGTTGGTAGCAGCCTTATTTAAAGCCCACACG
1 AGTTGGTGGCAACCTTTTC-AAAGTCAACACGAGTTGATGGCAACCTT-TTCAAAGTCCACACG
** ** * * * *
120441 TCTTAATGGCAACCTTTTCAAGGTCCACAC-ATGTTGGTGGCAACCTTCTCAAAAGCCTAAAAGC
1 AGTTGGTGGCAACCTTTTCAAAGTCAACACGA-GTTGATGGCAACCTTTTC-AAAG--T-----C
120505 CTACACG
57 C-ACACG
** * ** * ** * **
120512 AGTTGGCAGTAACCTTTTCAAAAG-CTGTCGCGAGTT-AGTAACAACCTTTTCAAAGTCAACATA
1 AGTTGGTGGCAACCTTTTC-AAAGTC-AACACGAGTTGA-TGGCAACCTTTTCAAAGTCCACACG
* * * * * * * *
120575 AGTTGTTGGCAACC-TTTCGAAGGTCCACATGAGTTGGTGGCAACCTTTTCAAAATAACACATG
1 AGTTGGTGGCAACCTTTTC-AAAGTCAACACGAGTTGATGGCAACCTTTTCAAAGT-CCACACG
* * ** * * * * * * *
120638 AGTTGGTAGCAATCTTTTCAAAAAC-CCACAGTGTTGGTGACAACTTTTTCAAAGTCTACACA
1 AGTTGGTGGCAACCTTTTCAAAGTCAACAC-GAGTTGATGGCAACCTTTTCAAAGTCCACACG
* * * * * * * * * * *
120700 AGTTGTTGGAAACATTTTCAAAAGCCCACACGGGTTGATGACAACTTTTTCAAAATCCATACA
1 AGTTGGTGGCAACCTTTTC-AAAGTCAACACGAGTTGATGGCAACCTTTTCAAAGTCCACACG
* * * *
120763 AGTTGTTGGCAACCTTTTCAAAAGCTC-ACACGAGTTTG-TGACAACCCTTTT-AAAATCTCACT
1 AGTTGGTGGCAACCTTTTC-AAAG-TCAACACGAG-TTGATGGCAA-CCTTTTCAAAGTC-CACA
*
120825 TG
61 CG
* * * * * * * *
120827 AGTTGGTAGC-ACCTTCTCAAAATCTCAGATGAGTTGGTGGTAACCTTTTCAAAAG-CGCACACG
1 AGTTGGTGGCAACCTTTTCAAAGTC-AACACGAGTTGATGGCAACCTTTTC-AAAGTC-CACACG
* * * * * *
120890 AGTTGGTGGC-ACCTTTTGCAAAAGTGC-ACATGTGTTGGTGGC-ACGATTTTCAAAGCCCAAAC
1 AGTTGGTGGCAACCTTTT-C-AAAGT-CAACACGAGTTGATGGCAAC-CTTTTCAAAGTCCACAC
120952 G
62 G
* * * * * * *
120953 AGTTGTTGGCAACCTTTTCAAAAGCCCACAGGAGTTGGTGGCAACCTTTACAAAGTTCACACG
1 AGTTGGTGGCAACCTTTTC-AAAGTCAACACGAGTTGATGGCAACCTTTTCAAAGTCCACACG
** * ** * * * ** * * *
121016 AGTTTATAGC-ACCATAGTCAAAGTCTACATGAGTTGGAT-GTAATATTTTCAAAAGCCCATATG
1 AGTTGGTGGCAACC-TTTTCAAAGTCAACACGAGTT-GATGGCAACCTTTTC-AAAGTCCACACG
* * * * * * ** ** *
121079 AGTTGCTGGTAACCTTTTTAAAGTCTATACAAGTGTGGCGGC-ACCATAGTCAAAGTCCAAAC-
1 AGTTGGTGGCAACCTTTTCAAAGTCAACACGAGT-TGATGGCAACC-TTTTCAAAGTCCACACG
***** * * * * * *
121141 AGGTTGGTGGCAAAAAAGTCAAAGTCCACACGAGTTGGTGGTAACATTTTC-AA-TACGACATG
1 A-GTTGGTGGCAACCTTTTCAAAGTCAACACGAGTTGATGGCAACCTTTTCAAAGT-CCACACG
* * ** * * *
121203 AGTTGGTAGCAACCTTTTCAAAAG-CAGACACGAGTTTG-TCGCTGCTCTTTTTAAAGCCCACAT
1 AGTTGGTGGCAACCTTTTC-AAAGTCA-ACACGAG-TTGATGGCAAC-CTTTTCAAAGTCCACAC
*
121266 A
62 G
** ** * * * *
121267 AGTTAATATCAACCTTTTCAAAGTCCACATGAGATGGTGGCAACCTTTTCAAAAGTCTAAAAGCC
1 AGTTGGTGGCAACCTTTTCAAAGTCAACACGAGTTGATGGCAACCTTTTC-AAAG--T------C
*
121332 CACACA
57 CACACG
* *** * * * *
121338 AGTTGGTGGTAA-CTATTTCAAAGTTTTCACGAGTAGGTGGCAACATTTTCAAAAGTCTACGA-G
1 AGTTGGTGGCAACCT-TTTCAAAGTCAACACGAGTTGATGGCAACCTTTTC-AAAGTCCAC-ACG
* * * * * **
121401 AGTTGGTCGCAACCTTTTCAAAAGCTC-ACATGAGTTGGTGACAACCTTTTCAAAATCCACATA
1 AGTTGGTGGCAACCTTTTC-AAAG-TCAACACGAGTTGATGGCAACCTTTTCAAAGTCCACACG
* ** * * * * *
121464 AGTTGTTGGCAACCACTTCAAAAGCTC-ACACAAGATGGTGGCAACCTTTTCAAAATCCCACATG
1 AGTTGGTGGCAACCTTTTC-AAAG-TCAACACGAGTTGATGGCAACCTTTTCAAAGT-CCACACG
* * * ** * * *
121528 AGTTGGTAGCAACCTCTTCAAAAGCTC-ACACGAGTTGCTAACAACCCTTTCAAAGTCCGCACA
1 AGTTGGTGGCAACCTTTTC-AAAG-TCAACACGAGTTGATGGCAACCTTTTCAAAGTCCACACG
* * * * *
121591 AGTTGTTGGCAACATTTTCAGAAGTCCACACGAGTTGGTGGCAACCTTTTCAATG-CCTACACG
1 AGTTGGTGGCAACCTTTTCA-AAGTCAACACGAGTTGATGGCAACCTTTTCAAAGTCC-ACACG
* * * * * * *
121654 AGTTGTTGGCAACCATTTT-AAAATCTCACATGAGTTGGTGGTAA-CTTTTACAGAA-ACCAACA
1 AGTTGGTGGCAACC-TTTTCAAAGTC-AACACGAGTTGATGGCAACCTTTT-CA-AAGTCC-ACA
121716 CG
61 CG
* * * * *
121718 AGTTGGTGGTAACCTTTTTAAAAGCTC-ACATGAGTT-AGTGGTAACCTTTTCAAAGTTCACACG
1 AGTTGGTGGCAACC-TTTTCAAAG-TCAACACGAGTTGA-TGGCAACCTTTTCAAAGTCCACACG
* ** * * * * * * * *
121781 AGTTTGTGGC-ACCATAGTCAAAGTCTACAGGAGTTGGTAGTAACTTTTTCAAAAG-CGTACATG
1 AGTTGGTGGCAACC-TTTTCAAAGTCAACACGAGTTGATGGCAACCTTTTC-AAAGTC-CACACG
* * * * * * * * * *
121844 TGCTGGTAGTAACCTTTTCAAAAGCCTACATGAGTTTG-CGGCAACCATGTCAAAGTCCACACG
1 AGTTGGTGGCAACCTTTTC-AAAGTCAACACGAG-TTGATGGCAACCTTTTCAAAGTCCACACG
* ** * * *
121907 AGTTGATGGCAACC-TTTCAAAAGTTTACAAGAGTTGGTGGCAACCTTTTCAAAAGCCCAAAAGC
1 AGTTGGTGGCAACCTTTTC-AAAGTCAACACGAGTTGATGGCAACCTTTTC-AAAGTCC---A--
121971 CCACAAG
59 -CAC--G
** * * * * * * * *
121978 AGTTGGAAGTAA-CTATTTCAATGTCCATACGAGTTGGTGGCAACCTTTTGAAAAGTCTACAAG
1 AGTTGGTGGCAACCT-TTTCAAAGTCAACACGAGTTGATGGCAACCTTTT-CAAAGTCCACACG
* * * * * ** * *
122041 AGTTAGG-GACAACCTTTTCAAAAGCCCACATGAGTTGGTAACAACCTTTTCAAAGTCTACACA
1 AGTT-GGTGGCAACCTTTTC-AAAGTCAACACGAGTTGATGGCAACCTTTTCAAAGTCCACACG
* * * * * * ** *
122104 AGTAGTTGGCAACTTTTTTTTTAAAAAGCCCACACGAGTT-AGTAACAACCTTTTCAAAGTCAAC
1 AGTTGGTGGCAAC----CTTTT-CAAAGTCAACACGAGTTGA-TGGCAACCTTTTCAAAGTCCAC
**
122168 ATA
60 ACG
* * * * ** * * * * * * *
122171 AGTTGTTAGCAACCTTTTCAAAAGCCCACATAAGTTGGTAGTAACTTTTTCAAAATCACATACA
1 AGTTGGTGGCAACCTTTTC-AAAGTCAACACGAGTTGATGGCAACCTTTTCAAAGTC-CACACG
* ** * * * **
122235 AGTTGGTAGCAACCTTTTCAAAAACCACA-GAGTT-AGTGACAACCTTTTCAAACTCCACATA
1 AGTTGGTGGCAACCTTTTCAAAGTCAACACGAGTTGA-TGGCAACCTTTTCAAAGTCCACACG
** * * * * * * * * * *
122296 AGTTATTAGAAACTTTTTTAAAAGTCCACACAAGTTAATGACAACCTTTTCAATGTCCACACA
1 AGTTGGTGGCAAC-CTTTTCAAAGTCAACACGAGTTGATGGCAACCTTTTCAAAGTCCACACG
* * ** * * * * * * *
122359 ACTTGTTGGCAACCTTTTCAAAAACCCACACAAGTTGGTGGTAACCTTTCCAAAATCCCACTCG
1 AGTTGGTGGCAACCTTTTC-AAAGTCAACACGAGTTGATGGCAACCTTTTCAAAGT-CCACACG
* * * * * * * * * * * * *
122423 AGTCGGT--C--GC---TCAAAATCCTATACGAGTAGGTAGTAA-CATTTGAAAGGCTCATACG
1 AGTTGGTGGCAACCTTTTCAAAGT-CAACACGAGTTGATGGCAACCTTTTCAAAGTC-CACACG
* * * * * * *
122479 AGTTGGTGGTAACCATTTCAAAAGCCCA-ATGGGTT-AGTGGCAACCTTTGCAAAAGTCCACACG
1 AGTTGGTGGCAACCTTTTC-AAAGTCAACACGAGTTGA-TGGCAACCTTTTC-AAAGTCCACACG
* * * * * * *
122542 AGTTGGTGGCAACCTCTTCAAGAGCTC-ATAGGAGTTGGTGGCAACCTTTTGAAAAATCTACACG
1 AGTTGGTGGCAACCTTTTCAA-AG-TCAACACGAGTTGATGGCAACCTTTT-CAAAGTCCACACG
* * * * * * *
122606 TGTTAGT-GCTAA-CTATTTCAAAGTCCACACTAGTTAATGCCAACC-TTTCAAAAGTCCACAAG
1 AGTTGGTGGC-AACCT-TTTCAAAGTCAACACGAGTTGATGGCAACCTTTTC-AAAGTCCACACG
* * * * *
122668 AGTTGGTGGCAACTTTTTCAAAAGCCCAAAAGCCCACACGAATT-AGTGGAAACCATTTCAAAGT
1 AGTTGGTGGCAACCTTTTC-AAAG-TC---A----ACACGAGTTGA-TGGCAACCTTTTCAAAGT
122732 CCACACG
56 CCACACG
* * * * * * *
122739 AGTTGGTGGCAACCTTTTCAAAAGTCTAGAAGAGTTGGTGGCAATCATTTCAAAAG-CTCACATG
1 AGTTGGTGGCAACCTTTTC-AAAGTCAACACGAGTTGATGGCAACCTTTTC-AAAGTC-CACACG
* * * * * * *
122803 AGTTGGTAGCAACCTTTTCAAAGGCCGACATGAGTCGGTGGGAACCTTTTCAAAAGTCCACACG
1 AGTTGGTGGCAACCTTTTCAAA-GTCAACACGAGTTGATGGCAACCTTTTC-AAAGTCCACACG
* * * * *
122867 AGTTGGTAGCAACCTTTTCAAAGCCCACACGAGTT-ATTGGCAACCTTTTTAAAAG-CTCACATG
1 AGTTGGTGGCAACCTTTTCAAAGTCAACACGAGTTGA-TGGCAACC-TTTTCAAAGTC-CACACG
* * * ** * * *
122930 AGTTGGTGACGACC-TTTCAAAATCCTGCACGAGTTGGTAGCAACCTTTTTAAAAG-CCTACAC-
1 AGTTGGTGGCAACCTTTTCAAAGT-CAACACGAGTTGATGGCAACC-TTTTCAAAGTCC-ACACG
* * * * * * * * * * *
122992 ATGTTGGTGGTAAGCTTTGCAAATGGGC-ACACAAGTTGGTGACAACTTTTTCAAAGCCCAAATG
1 A-GTTGGTGGCAACCTTTTCAAA--GTCAACACGAGTTGATGGCAACCTTTTCAAAGTCCACACG
* * * * * * *
123056 AGTTGTTGGCAACCTTTTCAAAAG-CTGACAGGAGTTGGTGGTAACCTTTTCAAAAATCCAGACG
1 AGTTGGTGGCAACCTTTTC-AAAGTC-AACACGAGTTGATGGCAACCTTTTC-AAAGTCCACACG
** * * * * *
123120 AGTTGGCAAG-AACCTTTTCAAAAATTC-ACACAAGTTGGTGGCAA-CTATTTCAAAGTGCACAT
1 AGTTGG-TGGCAACCTTTTC--AAAGTCAACACGAGTTGATGGCAACCT-TTTCAAAGTCCACAC
123182 G
62 G
* * * *** ** * *
123183 AATTGATAGCAACC-TTTCAAAAGTCTGTAAAAGTTGGTAGCAACCTTTTCAATAGTCCAAAAGC
1 AGTTGGTGGCAACCTTTTC-AAAGTCAACACGAGTTGATGGCAACCTTTTCAA-AGT--------
*
123247 CCACACA
56 CCACACG
* * * * * * * * * *
123254 AATTTGTGGTAACCATTTCAAAGCCCACACGAGTTGATGGCAACTTTTTCAAAAGTCTATAAG
1 AGTTGGTGGCAACCTTTTCAAAGTCAACACGAGTTGATGGCAACCTTTTC-AAAGTCCACACG
* * * * * *
123317 AGTTGGTAGCAA---TGTCAAAAGCCCACACGAGTT-A-GCAGCAACCTTTTCAAAATCTCACAT
1 AGTTGGTGGCAACCTTTTC-AAAGTCAACACGAGTTGATG--GCAACCTTTTCAAAGTC-CACAC
123377 G
62 G
* * * * * * ** **
123378 AGTTGATGGAAACATTTTTAATA-TCCCATATAAGTTCG-TAACAACCTTTTCAAAAG-CCACAC
1 AGTTGGTGGCAACCTTTTCAA-AGT-CAACACGAGTT-GATGGCAACCTTTTC-AAAGTCCACAC
123440 G
62 G
* * * * * ** * *
123441 AGTTGGTGGTAACCTTTTAAGAAGTCCATACGAGTTGGTGATAACCTTCTCAGAG-CCACACG
1 AGTTGGTGGCAACCTTTTCA-AAGTCAACACGAGTTGATGGCAACCTTTTCAAAGTCCACACG
* * * * * * ** * * * ** *
123503 AGTTGTTGTCAACATTTTTAAAAGCCTACGTGAGTTGGTGGTAACTTTTTC-ATTTACATACACG
1 AGTTGGTGGCAAC-CTTTTCAAAGTCAACACGAGTTGATGGCAACCTTTTCAAAGT-C-CACACG
* * * * * *
123567 AGTTGGTGGCAACCTTTTCAAAGTCTACAAGAGTTGGTGGTAACCTTTTAAAAGGCCCACACG
1 AGTTGGTGGCAACCTTTTCAAAGTCAACACGAGTTGATGGCAACCTTTTCAAA-GTCCACACG
* * * * * * * *
123630 AGTTGGTGGTAATCATTCCAAAGTCCACACGAGTTGATAGCAACCTTTCAAAAGCCCAAAAGCCC
1 AGTTGGTGGCAACCTTTTCAAAGTCAACACGAGTTGATGGCAACCTTT-------TC-AAAGTCC
123695 ACACG
58 ACACG
* * * * * *
123700 AGTTGATAGCAACCTTTTAAAAGCCCAAAAGCCCACACGAGTTGGTAGCAACCTTTTCAAAAGTC
1 AGTTGGTGGCAACCTTTT-------C-AAAGTCAACACGAGTTGATGGCAACCTTTTC-AAAGTC
*
123765 TACGA-G
57 CAC-ACG
* * * * * * * * * **
123771 AATTGGTCGCAACCTTTTCAAAAATCCACATGAATTGGTGACAACCTTTT-TAAGTCCACATA
1 AGTTGGTGGCAACCTTTTC-AAAGTCAACACGAGTTGATGGCAACCTTTTCAAAGTCCACACG
* * * * *
123833 AGTT-GTCAGCAACCTTTTCAAAAGCTC-ACACAAGTTGGTGGCAACCTTTTCAAAATCCCACAT
1 AGTTGGT-GGCAACCTTTTC-AAAG-TCAACACGAGTTGATGGCAACCTTTTCAAAGT-CCACAC
123896 G
62 G
* * * * * * *
123897 AGTTGGTAGCAACCTTTTCAAAAG-CTTACAGGAGATGGTGACAACCTTTTCAAAGTCCACACA
1 AGTTGGTGGCAACCTTTTC-AAAGTC-AACACGAGTTGATGGCAACCTTTTCAAAGTCCACACG
* * * * * * * *
123960 AGTTGTTGGCAACATTTTCAAAAGTCCACATGAGTTGGTGGCAACCTTTGCAAAG-CCTGCATG
1 AGTTGGTGGCAACCTTTTC-AAAGTCAACACGAGTTGATGGCAACCTTTTCAAAGTCC-ACACG
* * * *
124023 AGTTGTTGGCAACCTTTTTAAAAGCTC-ACACGAGTTGGTGGTAA-CTTTTACAGAAAGT-CACA
1 AGTTGGTGGCAACC-TTTTCAAAG-TCAACACGAGTTGATGGCAACCTTTT-C--AAAGTCCACA
*
124085 TG
61 CG
* * * * * * * *
124087 AGTTGGTGGTAACCTTTGT-AGAAGCCCATAGGAGTT-ATTGGTAATCTTTTCAAAGTTCACACG
1 AGTTGGTGGCAACCTTT-TCA-AAGTCAACACGAGTTGA-TGGCAACCTTTTCAAAGTCCACACG
* ** ** * * * * * **
124150 AGTTTGCAGC-ACCATAGTCAAAGTCTACA-GAGTTGGTAGTAACTTTTTCAAAAACCTACACG
1 AGTTGGTGGCAACC-TTTTCAAAGTCAACACGAGTTGATGGCAACCTTTTCAAAGTCC-ACACG
* * * * * * * * * * *
124212 TGCTGGTGGTAACTTTTTCAAAAGCCCACATGAGTTGGTGGCAACCATTTGAAAGTCCACATG
1 AGTTGGTGGCAACCTTTTC-AAAGTCAACACGAGTTGATGGCAACCTTTTCAAAGTCCACACG
* * * * * *
124275 AGTTGATGGCAACC-TTTCAAAAGTCTACAAGAGTTGGTGGCAGCCTTTTCAAAAGCCCAAAAGC
1 AGTTGGTGGCAACCTTTTC-AAAGTCAACACGAGTTGATGGCAACCTTTTC-AAAGTCC---A--
**
124339 CCATAAA
59 -C--ACG
** ** * * * * * *
124346 AGTTGGAAGTTA-CTATTTCAATA-TCCACACGAGTTGGTGGTAACCTTTTGAAAAGTCTACAAG
1 AGTTGGTGGCAACCT-TTTCAA-AGTCAACACGAGTTGATGGCAACCTTTT-CAAAGTCCACACG
* * * * * ** * *
124409 AGTTGGTAGTAACCTTTACAAAAGTCCACACGAGTTGGTAACAACCTTTTCAAAGTCTACACA
1 AGTTGGTGGCAACCTTTTC-AAAGTCAACACGAGTTGATGGCAACCTTTTCAAAGTCCACACG
* * * * ** * * **
124472 AGTTGTTGGCAACCTTTTCAAAAGCCCACACGAGTTGGTGATAACTTTTTCAATA-TCTCGCATT
1 AGTTGGTGGCAACCTTTTC-AAAGTCAACACGAGTTGATGGCAACCTTTTCAA-AGTC-CACACG
* * * * * * * * *
124536 AGTTGGTGGTAACCTTTTCAAAATCACATAC-ATGTTGGTAGAAACCTTTTCAAAGGCCTATATG
1 AGTTGGTGGCAACCTTTTCAAAGTCA-ACACGA-GTTGATGGCAACCTTTTCAAAGTCC-ACACG
* ** * * * * *
124600 AGTTTGTGATAACCTTTTCAATAGTTC-ACACAAGTTGGTGGCAGCCTTTTCAAAGCCCACGCG
1 AGTTGGTGGCAACCTTTTCAA-AG-TCAACACGAGTTGATGGCAACCTTTTCAAAGTCCACACG
* ** * * * * *
124663 AGTTGTTGGCAACCTTATAAAAAGTCCACACGAGTTGGTGGCAACCTTTTCAAAAATCCATATG
1 AGTTGGTGGCAACCTT-TTCAAAGTCAACACGAGTTGATGGCAACCTTTTC-AAAGTCCACACG
* * * * * *
124727 AGTTGGTAGCAACCTTTTCAAAACTCTACATGAGTTGGTGGCAA-CTATTTCAAAGTCCACACA
1 AGTTGGTGGCAACCTTTTC-AAAGTCAACACGAGTTGATGGCAACCT-TTTCAAAGTCCACACG
* ** * * **
124790 AGTTGTTGGCAATATTTTCAAAAGTCCACACGAGTTGGTGGCAACCTTTTCAAAGTCCACATA
1 AGTTGGTGGCAACCTTTTC-AAAGTCAACACGAGTTGATGGCAACCTTTTCAAAGTCCACACG
* * * * **
124853 AGTTGTTGGCAACCATTTTAAAAGCTCAA-ACAAGTTGTTGGCAA-CTTTTACAAAAACCCACAC
1 AGTTGGTGGCAACC-TTTTCAAAG-TCAACACGAGTTGATGGCAACCTTTT-C-AAAGTCCACAC
124916 G
62 G
** * * * ** * *
124917 AGTTGGTGATAACCTTTTTAAAAGCCCATTCGAGTT-AGTGGTAACCTTTTCAAAGTTCACACG
1 AGTTGGTGGCAACC-TTTTCAAAGTCAACACGAGTTGA-TGGCAACCTTTTCAAAGTCCACACG
* * ** * * * * * ** *
124980 AGTTTGTGG-TACCATAATCAAAGTCTACACAAGTT-AGTGGTAACGTTTTTAAAAGTTGACAGG
1 AGTTGGTGGCAACC-TTTTCAAAGTCAACACGAGTTGA-TGGCAAC-CTTTTCAAAGTCCACACG
* * * * * * * * * *
125043 AGTTGATGGCAACCATTTCAAAAGCCCACAAGAATT-AGTGGCAACCTTTTTAAAGTTCATATG
1 AGTTGGTGGCAACCTTTTC-AAAGTCAACACGAGTTGA-TGGCAACCTTTTCAAAGTCCACACG
* * * * * * * *
125106 AGTTGGTGGTAACCTTTTCAAAAGCCCACACAAATTG-TCGGTAGCCTTTTTAAAAGTCCACACG
1 AGTTGGTGGCAACCTTTTC-AAAGTCAACACGAGTTGAT-GGCAACC-TTTTCAAAGTCCACACG
* * * * * ** * * *
125170 AGTTGATGACAACCTTTTCAAAGTCCACATGAATTGGGGGCAATCTTTTCAAAGGCCCACACA
1 AGTTGGTGGCAACCTTTTCAAAGTCAACACGAGTTGATGGCAACCTTTTCAAA-GTCCACACG
* * * * * ** **
125233 AGTTGGTGGTAACATTTTCAAAAGTCCACACTAGTTGGTGAAAACCTTTTCAAAG-CTGCACG
1 AGTTGGTGGCAACCTTTTC-AAAGTCAACACGAGTTGATGGCAACCTTTTCAAAGTCCACACG
* * * * * ** *
125295 AGTTGTTGGCAACCTTTTCGAAAGCCCACATGAGTT-AGTGGCAACTTTTTCAACAACCCACAAG
1 AGTTGGTGGCAACCTTTTC-AAAGTCAACACGAGTTGA-TGGCAACCTTTTCAA-AGTCCACACG
* * * * * ** * * * *
125359 AGTTGGTGGCAACTTTTTTAAAAGCCCACACGATTTGGCGACAACTTTTTCAAAGTTCACACA
1 AGTTGGTGGCAAC-CTTTTCAAAGTCAACACGAGTTGATGGCAACCTTTTCAAAGTCCACACG
* ** * * * * * * **
125422 AGTTTGTGGC-ACCATAGTCAAAGTCCACAAGAGTT-AGTGGTAACATTTTAAAAAGTCTACATA
1 AGTTGGTGGCAACC-TTTTCAAAGTCAACACGAGTTGA-TGGCAACCTTTT-CAAAGTCCACACG
* * * * * * * * * *
125485 AGTTGATTGCAACCATTTCAAAAGCCCACACGAATTGGTGGCAACCTTTTTAAAGTCCATATG
1 AGTTGGTGGCAACCTTTTC-AAAGTCAACACGAGTTGATGGCAACCTTTTCAAAGTCCACACG
* * ** * * * * * *
125548 ACTTGGTGGCAACCTTTTCAAAAGACTGCACGTGCT-ATTGG-AAGCTTTTTTAAAAGCCCACAT
1 AGTTGGTGGCAACCTTTTC-AAAGTCAACACGAGTTGA-TGGCAA-C-CTTTTCAAAGTCCACAC
125611 G
62 G
* * ** * * *
125612 AGTTGATGGCAACCTTTTCAAAGTCCACATAAGTT-AGGGGCAACCTTTTCAAAGCCCACACA
1 AGTTGGTGGCAACCTTTTCAAAGTCAACACGAGTTGA-TGGCAACCTTTTCAAAGTCCACACG
* * *
125674 AATTGG-GAGCAACCTTTTCAAAGTTC-ACATGAGTTTATGGCA
1 AGTTGGTG-GCAACCTTTTCAAAG-TCAACACGAGTTGATGGCA
125716 CCATAGTCAA
Statistics
Matches: 12100, Mismatches: 3082, Indels: 2023
0.70 0.18 0.12
Matches are distributed among these distances:
55 1 0.00
56 20 0.00
57 16 0.00
58 7 0.00
59 75 0.01
60 43 0.00
61 353 0.03
62 1726 0.14
63 4613 0.38
64 3489 0.29
65 230 0.02
66 132 0.01
67 58 0.00
68 13 0.00
69 31 0.00
70 110 0.01
71 865 0.07
72 122 0.01
73 10 0.00
74 19 0.00
75 44 0.00
76 7 0.00
77 5 0.00
78 39 0.00
79 54 0.00
80 12 0.00
81 5 0.00
82 1 0.00
ACGTcount: A:0.31, C:0.22, G:0.19, T:0.28
Consensus pattern (62 bp):
AGTTGGTGGCAACCTTTTCAAAGTCAACACGAGTTGATGGCAACCTTTTCAAAGTCCACACG
Found at i:109704 original size:102 final size:101
Alignment explanation
Indices: 109518--109713 Score: 259
Period size: 102 Copynumber: 1.9 Consensus size: 101
109508 TTAAAGGCTC
* * *
109518 ACACGAGTTGGTGGCAACCATTTCAAAGTCAACACGAGTTGATAGCAACCTTTCAAAAGTCCATA
1 ACACGAGTTAGTGGCAACCATTTCAAAGTCAACACGAGTTAATAGCAACCTTTCAAAAGTCCACA
* *
109583 AAAGTTGGTGGTAAACTTTTCAAAGGCCCAAAAGCCT
66 AAAGTTGGGGGCAAACTTTTCAAA-GCCCAAAAGCCT
* * *
109620 ACACGAGTTAGTGGCAACCATTTCAAAGTCCACACGAGTTAATGGCAACTTTTTC-AAAGTCCAC
1 ACACGAGTTAGTGGCAACCATTTCAAAGTCAACACGAGTTAATAGCAAC-CTTTCAAAAGTCCAC
** * *
109684 ATGAGTTGGGGGCAACCTTTTCCAAGCCCA
65 AAAAGTTGGGGGCAAACTTTTCAAAGCCCA
109714 CACAAGTTAG
Statistics
Matches: 81, Mismatches: 12, Indels: 3
0.84 0.12 0.03
Matches are distributed among these distances:
101 5 0.06
102 72 0.89
103 4 0.05
ACGTcount: A:0.33, C:0.23, G:0.20, T:0.24
Consensus pattern (101 bp):
ACACGAGTTAGTGGCAACCATTTCAAAGTCAACACGAGTTAATAGCAACCTTTCAAAAGTCCACA
AAAGTTGGGGGCAAACTTTTCAAAGCCCAAAAGCCT
Found at i:109722 original size:62 final size:62
Alignment explanation
Indices: 109624--109896 Score: 235
Period size: 62 Copynumber: 4.4 Consensus size: 62
109614 AAGCCTACAC
* * * *
109624 GAGTTAGTGGCAACCATTTCAAAGTCCACACGAGTTAATGGCAACTTTTTCAAAGTCCACAT
1 GAGTTGGTGGCAACCTTTTCAAAGACCACACAAGTTAATGGCAACTTTTTCAAAGTCCACAT
* * * * * ** *
109686 GAGTTGGGGGCAACCTTTTCCAAGCCCACACAAGTTAGTGGCAGCCATTTCAAAGTCCACGT
1 GAGTTGGTGGCAACCTTTTCAAAGACCACACAAGTTAATGGCAACTTTTTCAAAGTCCACAT
* ** * * * *
109748 GAGTTGGTGGCAATCTTTTCAAAAGACCACACAAGTTGTTGGCAGCCTTTTTAAAAGCCCACAC
1 GAGTTGGTGGCAACCTTTTC-AAAGACCACACAAGTTAATGGCA-ACTTTTTCAAAGTCCACAT
* * * * ** * * *
109812 GAGTTGATGGCAACCTTTTCAAAGTCTACACGAGTT-GGGGTAACCTTTTCAAA-TCCAACAC
1 GAGTTGGTGGCAACCTTTTCAAAGACCACACAAGTTAATGGCAACTTTTTCAAAGTCC-ACAT
* *
109873 GAGTTTGTGGCAACCTTTTTAAAG
1 GAGTTGGTGGCAACCTTTTCAAAG
109897 TCCGTACGAG
Statistics
Matches: 169, Mismatches: 39, Indels: 7
0.79 0.18 0.03
Matches are distributed among these distances:
60 2 0.01
61 33 0.20
62 72 0.43
63 32 0.19
64 30 0.18
ACGTcount: A:0.29, C:0.23, G:0.21, T:0.27
Consensus pattern (62 bp):
GAGTTGGTGGCAACCTTTTCAAAGACCACACAAGTTAATGGCAACTTTTTCAAAGTCCACAT
Done.