Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1754
Parameters: 2 7 7 80 10 50 1000
Length:  49127

Tables:   1   

This is table  1  of  1  ( 44 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
212--247
17
2.1
17
89
0
54
50
0
0
50
1.00
223--271
21
2.3
21
82
10
55
59
0
0
40
0.98
263--295
12
2.8
12
90
4
50
51
3
0
45
1.16
3836--3877
2
21.5
2
95
4
77
52
0
0
47
1.00
4826--4884
31
1.9
31
83
13
77
50
3
0
45
1.18
5429--5454
3
8.7
3
100
0
52
34
0
0
65
0.93
5581--5646
26
2.4
28
75
9
66
57
0
3
39
1.14
5640--5676
18
2.1
18
90
5
58
54
0
0
45
1.00
6172--6222
2
26.0
2
76
11
52
50
1
1
45
1.24
7070--7128
25
2.3
27
80
14
70
50
0
0
49
1.00
7092--7122
15
2.1
15
93
0
53
41
0
0
58
0.98
7368--7443
8
8.3
9
73
20
52
55
1
2
40
1.22
8359--8407
18
2.7
18
78
18
57
36
0
0
63
0.95
8316--8408
27
3.3
30
74
17
81
38
0
2
59
1.10
8320--8461
73
2.0
72
82
12
175
38
0
2
58
1.18
9064--9102
21
1.9
20
89
5
60
38
15
10
35
1.81
12528--12560
15
2.3
15
89
5
50
72
6
3
18
1.18
12787--12906
20
5.7
21
70
11
77
35
6
7
50
1.57
12787--12875
21
4.2
21
73
9
74
37
7
8
46
1.65
12793--12892
41
2.5
40
76
14
105
36
6
7
51
1.54
15440--15485
19
2.4
18
86
13
65
50
0
0
50
1.00
18448--18477
2
15.0
2
92
0
51
50
3
0
46
1.18
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
19155--19196
21
2.0
21
85
0
57
54
0
0
45
0.99
20173--20242
23
3.0
25
76
19
71
41
0
1
57
1.08
21173--21217
13
3.6
12
77
11
54
46
2
0
51
1.13
24737--25151
102
3.7
114
74
12
321
29
18
21
30
1.97
28427--28452
2
13.0
2
100
0
52
50
0
0
50
1.00
30306--30332
2
13.5
2
100
0
54
0
48
0
51
1.00
31375--31411
13
3.0
13
80
15
51
54
0
0
45
1.00
31974--32004
7
4.6
7
92
8
55
41
0
0
58
0.98
31974--32012
13
3.1
13
89
10
55
43
0
0
56
0.99
31981--32018
13
3.4
11
89
10
51
44
0
0
55
0.99
32249--32273
9
2.8
9
100
0
50
52
0
0
48
1.00
32285--32337
14
4.1
13
83
16
74
60
1
0
37
1.08
32266--32305
20
2.1
19
85
4
53
57
5
0
37
1.21
32285--32337
25
2.1
25
92
0
88
60
1
0
37
1.08
32285--32337
13
4.2
12
80
20
63
60
1
0
37
1.08
32250--32323
25
3.5
20
66
20
51
55
2
0
41
1.14
33399--33427
4
7.2
4
100
0
58
75
0
0
24
0.80
33680--33719
21
1.9
21
85
10
55
37
0
0
62
0.95
35356--35403
2
24.0
2
100
0
96
50
0
0
50
1.00
39211--39420
103
2.0
103
91
3
343
54
9
4
31
1.52
41366--41460
37
2.6
36
86
3
127
34
27
15
22
1.94
45779--45859
37
2.2
37
88
0
117
28
19
20
30
1.97

Tables:   1

The End!