Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold1756
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 59520
ACGTcount: A:0.31, C:0.18, G:0.19, T:0.32
Found at i:4141 original size:3 final size:3
Alignment explanation
Indices: 4127--4156 Score: 51
Period size: 3 Copynumber: 10.0 Consensus size: 3
4117 TCTGCATCAA
*
4127 AAT AAC AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
4157 CAAATGAGTG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.67, C:0.03, G:0.00, T:0.30
Consensus pattern (3 bp):
AAT
Found at i:6417 original size:2 final size:2
Alignment explanation
Indices: 6404--6437 Score: 59
Period size: 2 Copynumber: 17.0 Consensus size: 2
6394 TAGAAAATAA
*
6404 AT AT AC AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
6438 GCAAAATCTT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:10123 original size:21 final size:20
Alignment explanation
Indices: 10082--10120 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 20
10072 TAATAATGTA
10082 TATATTTTTTAATTATTAAT
1 TATATTTTTTAATTATTAAT
10102 TATATTTATTTAA-TATTAA
1 TATATTT-TTTAATTATTAA
10121 ATTTAACAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 13 0.72
21 5 0.28
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (20 bp):
TATATTTTTTAATTATTAAT
Found at i:10738 original size:2 final size:2
Alignment explanation
Indices: 10733--10764 Score: 57
Period size: 2 Copynumber: 16.5 Consensus size: 2
10723 TTTTTTTAAA
10733 AT AT AT AT AT AT AT AT AT AT AT AT AT -T AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
10765 ATTATATTGA
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 28 0.97
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:10768 original size:8 final size:9
Alignment explanation
Indices: 10733--10771 Score: 55
Period size: 8 Copynumber: 4.4 Consensus size: 9
10723 TTTTTTTAAA
10733 ATATATA-T
1 ATATATATT
10741 ATATATATAT
1 ATATATAT-T
10751 ATATATATT
1 ATATATATT
10760 ATATA-ATT
1 ATATATATT
10768 ATAT
1 ATAT
10772 TGATATTTGA
Statistics
Matches: 29, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
8 14 0.48
9 6 0.21
10 9 0.31
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (9 bp):
ATATATATT
Found at i:12474 original size:14 final size:14
Alignment explanation
Indices: 12431--12484 Score: 54
Period size: 14 Copynumber: 3.7 Consensus size: 14
12421 TAAAACTTAA
12431 TAAAAAAATTAAATT
1 TAAAAAAA-TAAATT
* * *
12446 ATTAAAGATTAAATT
1 -TAAAAAAATAAATT
12461 TAAAAAAATAAATT
1 TAAAAAAATAAATT
*
12475 AAAAAAAATA
1 TAAAAAAATA
12485 TGGGCAGCTT
Statistics
Matches: 31, Mismatches: 7, Indels: 2
0.77 0.17 0.05
Matches are distributed among these distances:
14 20 0.65
15 6 0.19
16 5 0.16
ACGTcount: A:0.69, C:0.00, G:0.02, T:0.30
Consensus pattern (14 bp):
TAAAAAAATAAATT
Found at i:21196 original size:20 final size:19
Alignment explanation
Indices: 21148--21221 Score: 94
Period size: 20 Copynumber: 3.8 Consensus size: 19
21138 AAAAAGACAT
21148 AATGTATCGATACATTGAA
1 AATGTATCGATACATTGAA
* * *
21167 GATATATCGATACATTCATA
1 AATGTATCGATACATTGA-A
*
21187 AATGTATCGATATATTGAAA
1 AATGTATCGATACATTG-AA
21207 AATGTATCGATACAT
1 AATGTATCGATACAT
21222 CTAGGTAAAA
Statistics
Matches: 45, Mismatches: 8, Indels: 3
0.80 0.14 0.05
Matches are distributed among these distances:
19 15 0.33
20 29 0.64
21 1 0.02
ACGTcount: A:0.42, C:0.11, G:0.14, T:0.34
Consensus pattern (19 bp):
AATGTATCGATACATTGAA
Found at i:21908 original size:29 final size:29
Alignment explanation
Indices: 21794--22977 Score: 1371
Period size: 29 Copynumber: 40.5 Consensus size: 29
21784 CCACCAACTT
**
21794 TTGTGGGCTTTGAAAAGAGTTGCCACCAAC
1 TTGTGGGCTTTGAAAAGAG-TGCCACTGAC
*
21824 TCGTGTGGGCTTTG-AAAG-GTTGCCACTGAA
1 T--TGTGGGCTTTGAAAAGAG-TGCCACTGAC
*
21854 TTGTGGGCTTTG-AAAGGGTGCCACTGAC
1 TTGTGGGCTTTGAAAAGAGTGCCACTGAC
*
21882 TTGTGGGCTTCGAAAAGAGTGCCACTGAC
1 TTGTGGGCTTTGAAAAGAGTGCCACTGAC
*
21911 TTGTGGGCTTTG-AAAGGGTGCCACTGAC
1 TTGTGGGCTTTGAAAAGAGTGCCACTGAC
* * *
21939 TTGTGAGTTTTG-AAAGGGTGCCACTGAC
1 TTGTGGGCTTTGAAAAGAGTGCCACTGAC
* * *
21967 TTGTGGGCTTTGAAAGGA-TGCCATTAAC
1 TTGTGGGCTTTGAAAAGAGTGCCACTGAC
*
21995 TTGTGGGCTTTG-AAAGAATGCCACTGAC
1 TTGTGGGCTTTGAAAAGAGTGCCACTGAC
*
22023 TTGTGGGCTTCGAAAAGAGTGCCACTGAC
1 TTGTGGGCTTTGAAAAGAGTGCCACTGAC
*
22052 TTGTGGGCTTTG-AAAGAATGCCACTGAC
1 TTGTGGGCTTTGAAAAGAGTGCCACTGAC
22080 TTGTGAGTATGGGCTTTGAAAAGAGTGCCACTGAC
1 -T-T--G--TGGGCTTTGAAAAGAGTGCCACTGAC
*
22115 TTGTGGGCTTTGAAAAGAGTGCCACTGAA
1 TTGTGGGCTTTGAAAAGAGTGCCACTGAC
*
22144 TTGTGGGCTTTG-AAAGGGTGCCACTGAC
1 TTGTGGGCTTTGAAAAGAGTGCCACTGAC
*
22172 TTGTGGGCTTTGAAAAGAGTGCCACTGAT
1 TTGTGGGCTTTGAAAAGAGTGCCACTGAC
*
22201 TTGTGGGCTTTG-AAAGGGTGCCACTGAC
1 TTGTGGGCTTTGAAAAGAGTGCCACTGAC
* * *
22229 TTATGGGCTTTGAAAGGAGTGCCACTAAC
1 TTGTGGGCTTTGAAAAGAGTGCCACTGAC
*
22258 TTGTGGGCTCTGAAAAG-GTGCCACTGAC
1 TTGTGGGCTTTGAAAAGAGTGCCACTGAC
*
22286 TTGTGGGCTTTGAAAAGAGTGCCACTGAT
1 TTGTGGGCTTTGAAAAGAGTGCCACTGAC
* *
22315 TTGTGGGCTTTG-AAAGGGTGCTACTGAC
1 TTGTGGGCTTTGAAAAGAGTGCCACTGAC
*
22343 TTGTGGGCTTTGAAAAGAGTGCCACTGAT
1 TTGTGGGCTTTGAAAAGAGTGCCACTGAC
22372 TTGTGGGCTTTGAAAAGAGTGCCACTGAC
1 TTGTGGGCTTTGAAAAGAGTGCCACTGAC
* *
22401 TTGTAGGCTTTGAAAGGAGTGCCACTGAC
1 TTGTGGGCTTTGAAAAGAGTGCCACTGAC
* * *
22430 TTGTGGGATTTGAAAGGA-TGCCACTAAC
1 TTGTGGGCTTTGAAAAGAGTGCCACTGAC
* * * *
22458 TTTTGGGCTTTAAAAAGAGTACCATTGAC
1 TTGTGGGCTTTGAAAAGAGTGCCACTGAC
*
22487 TTGTGGGCTTTG-AAAGGGTGCCACTGAC
1 TTGTGGGCTTTGAAAAGAGTGCCACTGAC
* *
22515 TTGTGAGCTTTGAAAAGAGTGCCACTGAT
1 TTGTGGGCTTTGAAAAGAGTGCCACTGAC
* *
22544 TTATGGGCTTTGAAAAAAGTGCCACTGAC
1 TTGTGGGCTTTGAAAAGAGTGCCACTGAC
* *
22573 TTGTGAGCTTTGAAAAGAGTGCCACTGAA
1 TTGTGGGCTTTGAAAAGAGTGCCACTGAC
*
22602 TTGTGGGCTTTGAAATG-GTGCCACTGAC
1 TTGTGGGCTTTGAAAAGAGTGCCACTGAC
*
22630 TTGTGGGCTTTGAAAAGAGTGCCACTGAT
1 TTGTGGGCTTTGAAAAGAGTGCCACTGAC
*
22659 TTATGGGCTTTGAAAAGAGTGCCACTGAC
1 TTGTGGGCTTTGAAAAGAGTGCCACTGAC
* *
22688 TTGTGGGCTTTGAAAATAGTGCCACTGAA
1 TTGTGGGCTTTGAAAAGAGTGCCACTGAC
* *
22717 TTGTGGGCTTCG-AAAGGGTGCCACTGAC
1 TTGTGGGCTTTGAAAAGAGTGCCACTGAC
* * **
22745 TTGTGGGCTTTGAAATGGGTTGCCACCAAC
1 TTGTGGGCTTTGAAAAGAG-TGCCACTGAC
* **
22775 TTGGGTGGGCTTT-AAAATGGGTTGCCACCAAC
1 TT--GTGGGCTTTGAAAA-GAG-TGCCACTGAC
* **
22807 TTGTGTGGGCTTTGAAATA-AGTTACCACCAAC
1 -T-TGTGGGCTTTGAAA-AGAG-TGCCACTGAC
* **
22839 TTGTGTGGGCTTT-AAAATGGGTTGCCACCAAC
1 -T-TGTGGGCTTTGAAAA-GAG-TGCCACTGAC
* **
22871 TTGTGTGGGCTTTGAAATGAGTTGCCACCAAC
1 -T-TGTGGGCTTTGAAAAGAG-TGCCACTGAC
* *
22903 TTGTGTGGGCTTTGAAAAGAGTGTCACTGAT
1 -T-TGTGGGCTTTGAAAAGAGTGCCACTGAC
22934 TTGTGGGCTTTGAAAAGAGTGCCACTGAC
1 TTGTGGGCTTTGAAAAGAGTGCCACTGAC
22963 TTGTGGGCTTTGAAA
1 TTGTGGGCTTTGAAA
22978 GGGATGAACA
Statistics
Matches: 1013, Mismatches: 108, Indels: 67
0.85 0.09 0.06
Matches are distributed among these distances:
27 4 0.00
28 339 0.33
29 469 0.46
30 24 0.02
31 17 0.02
32 125 0.12
33 8 0.01
34 12 0.01
35 15 0.01
ACGTcount: A:0.24, C:0.17, G:0.30, T:0.29
Consensus pattern (29 bp):
TTGTGGGCTTTGAAAAGAGTGCCACTGAC
Found at i:21916 original size:57 final size:57
Alignment explanation
Indices: 21794--22980 Score: 1396
Period size: 57 Copynumber: 20.3 Consensus size: 57
21784 CCACCAACTT
* ** *
21794 TTGTGGGCTTTGAAAAGAGTTGCCACCAACTCGTGTGGGCTTTG-AAAG-GTTGCCACTGAA
1 TTGTGGGCTTTG-AAAG-GGTGCCACTGACT--TGTGGGCTTTGAAAAGAG-TGCCACTGAC
*
21854 TTGTGGGCTTTGAAAGGGTGCCACTGACTTGTGGGCTTCGAAAAGAGTGCCACTGAC
1 TTGTGGGCTTTGAAAGGGTGCCACTGACTTGTGGGCTTTGAAAAGAGTGCCACTGAC
* * *
21911 TTGTGGGCTTTGAAAGGGTGCCACTGACTTGTGAGTTTTG-AAAGGGTGCCACTGAC
1 TTGTGGGCTTTGAAAGGGTGCCACTGACTTGTGGGCTTTGAAAAGAGTGCCACTGAC
* * * *
21967 TTGTGGGCTTTGAAAGGATGCCATTAACTTGTGGGCTTTG-AAAGAATGCCACTGAC
1 TTGTGGGCTTTGAAAGGGTGCCACTGACTTGTGGGCTTTGAAAAGAGTGCCACTGAC
* * *
22023 TTGTGGGCTTCGAAAAGAGTGCCACTGACTTGTGGGCTTTG-AAAGAATGCCACTGAC
1 TTGTGGGCTTTG-AAAGGGTGCCACTGACTTGTGGGCTTTGAAAAGAGTGCCACTGAC
* *
22080 TTGTGAGTATGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGCTTTGAAAAGAGTGCCACTGAA
1 -T-T--G--TGGGCTTTG-AAAGGGTGCCACTGACTTGTGGGCTTTGAAAAGAGTGCCACTGAC
*
22144 TTGTGGGCTTTGAAAGGGTGCCACTGACTTGTGGGCTTTGAAAAGAGTGCCACTGAT
1 TTGTGGGCTTTGAAAGGGTGCCACTGACTTGTGGGCTTTGAAAAGAGTGCCACTGAC
* * *
22201 TTGTGGGCTTTGAAAGGGTGCCACTGACTTATGGGCTTTGAAAGGAGTGCCACTAAC
1 TTGTGGGCTTTGAAAGGGTGCCACTGACTTGTGGGCTTTGAAAAGAGTGCCACTGAC
* * *
22258 TTGTGGGCTCTGAAAAGGTGCCACTGACTTGTGGGCTTTGAAAAGAGTGCCACTGAT
1 TTGTGGGCTTTGAAAGGGTGCCACTGACTTGTGGGCTTTGAAAAGAGTGCCACTGAC
* *
22315 TTGTGGGCTTTGAAAGGGTGCTACTGACTTGTGGGCTTTGAAAAGAGTGCCACTGAT
1 TTGTGGGCTTTGAAAGGGTGCCACTGACTTGTGGGCTTTGAAAAGAGTGCCACTGAC
* * *
22372 TTGTGGGCTTTGAAAAGAGTGCCACTGACTTGTAGGCTTTGAAAGGAGTGCCACTGAC
1 TTGTGGGCTTTG-AAAGGGTGCCACTGACTTGTGGGCTTTGAAAAGAGTGCCACTGAC
* * * * * * *
22430 TTGTGGGATTTGAAAGGATGCCACTAACTTTTGGGCTTTAAAAAGAGTACCATTGAC
1 TTGTGGGCTTTGAAAGGGTGCCACTGACTTGTGGGCTTTGAAAAGAGTGCCACTGAC
* *
22487 TTGTGGGCTTTGAAAGGGTGCCACTGACTTGTGAGCTTTGAAAAGAGTGCCACTGAT
1 TTGTGGGCTTTGAAAGGGTGCCACTGACTTGTGGGCTTTGAAAAGAGTGCCACTGAC
* ** * *
22544 TTATGGGCTTTGAAAAAAGTGCCACTGACTTGTGAGCTTTGAAAAGAGTGCCACTGAA
1 TTGTGGGCTTTG-AAAGGGTGCCACTGACTTGTGGGCTTTGAAAAGAGTGCCACTGAC
* *
22602 TTGTGGGCTTTGAAATGGTGCCACTGACTTGTGGGCTTTGAAAAGAGTGCCACTGAT
1 TTGTGGGCTTTGAAAGGGTGCCACTGACTTGTGGGCTTTGAAAAGAGTGCCACTGAC
* * * *
22659 TTATGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGCTTTGAAAATAGTGCCACTGAA
1 TTGTGGGCTTTG-AAAGGGTGCCACTGACTTGTGGGCTTTGAAAAGAGTGCCACTGAC
* * * **
22717 TTGTGGGCTTCGAAAGGGTGCCACTGACTTGTGGGCTTTGAAATGGGTTGCCACCAAC
1 TTGTGGGCTTTGAAAGGGTGCCACTGACTTGTGGGCTTTGAAAAGAG-TGCCACTGAC
* ** * **
22775 TTGGGTGGGCTTTAAAATGGGTTGCCACCAACTTGTGTGGGCTTTGAAATA-AGTTACCACCAAC
1 TT--GTGGGCTTTGAAA-GGG-TGCCACTGAC-T-TGTGGGCTTTGAAA-AGAG-TGCCACTGAC
* ** * **
22839 TTGTGTGGGCTTTAAAATGGGTTGCCACCAACTTGTGTGGGCTTTGAAATGAGTTGCCACCAAC
1 -T-TGTGGGCTTTGAAA-GGG-TGCCACTGAC-T-TGTGGGCTTTGAAAAGAG-TGCCACTGAC
* * *
22903 TTGTGTGGGCTTTGAAAAGAGTGTCACTGATTTGTGGGCTTTGAAAAGAGTGCCACTGAC
1 -T-TGTGGGCTTTG-AAAGGGTGCCACTGACTTGTGGGCTTTGAAAAGAGTGCCACTGAC
22963 TTGTGGGCTTTGAAAGGG
1 TTGTGGGCTTTGAAAGGG
22981 ATGAACATTC
Statistics
Matches: 997, Mismatches: 105, Indels: 53
0.86 0.09 0.05
Matches are distributed among these distances:
56 85 0.09
57 486 0.49
58 196 0.20
59 6 0.01
60 32 0.03
61 21 0.02
62 10 0.01
63 45 0.05
64 111 0.11
65 4 0.00
66 1 0.00
ACGTcount: A:0.24, C:0.17, G:0.31, T:0.29
Consensus pattern (57 bp):
TTGTGGGCTTTGAAAGGGTGCCACTGACTTGTGGGCTTTGAAAAGAGTGCCACTGAC
Found at i:22822 original size:64 final size:64
Alignment explanation
Indices: 22746--22920 Score: 305
Period size: 64 Copynumber: 2.7 Consensus size: 64
22736 GCCACTGACT
* *
22746 TGTGGGCTTTGAAATGGGTTGCCACCAACTTGGGTGGGCTTTAAAATGGGTTGCCACCAACTTG
1 TGTGGGCTTTGAAATGAGTTGCCACCAACTTGTGTGGGCTTTAAAATGGGTTGCCACCAACTTG
* *
22810 TGTGGGCTTTGAAATAAGTTACCACCAACTTGTGTGGGCTTTAAAATGGGTTGCCACCAACTTG
1 TGTGGGCTTTGAAATGAGTTGCCACCAACTTGTGTGGGCTTTAAAATGGGTTGCCACCAACTTG
22874 TGTGGGCTTTGAAATGAGTTGCCACCAACTTGTGTGGGCTTTGAAAA
1 TGTGGGCTTTGAAATGAGTTGCCACCAACTTGTGTGGGCTTT-AAAA
22921 GAGTGTCACT
Statistics
Matches: 104, Mismatches: 6, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
64 100 0.96
65 4 0.04
ACGTcount: A:0.23, C:0.18, G:0.29, T:0.31
Consensus pattern (64 bp):
TGTGGGCTTTGAAATGAGTTGCCACCAACTTGTGTGGGCTTTAAAATGGGTTGCCACCAACTTG
Found at i:22857 original size:96 final size:96
Alignment explanation
Indices: 22746--22919 Score: 312
Period size: 96 Copynumber: 1.8 Consensus size: 96
22736 GCCACTGACT
* *
22746 TGTGGGCTTTGAAATGGGTTGCCACCAACTTGGGTGGGCTTTAAAATGGGTTGCCACCAACTTGT
1 TGTGGGCTTTAAAATGGGTTGCCACCAACTTGGGTGGGCTTTAAAATGAGTTGCCACCAACTTGT
22811 GTGGGCTTTGAAATAAGTTACCACCAACTTG
66 GTGGGCTTTGAAATAAGTTACCACCAACTTG
* *
22842 TGTGGGCTTTAAAATGGGTTGCCACCAACTTGTGTGGGCTTTGAAATGAGTTGCCACCAACTTGT
1 TGTGGGCTTTAAAATGGGTTGCCACCAACTTGGGTGGGCTTTAAAATGAGTTGCCACCAACTTGT
22907 GTGGGCTTTGAAA
66 GTGGGCTTTGAAA
22920 AGAGTGTCAC
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
96 74 1.00
ACGTcount: A:0.22, C:0.18, G:0.29, T:0.31
Consensus pattern (96 bp):
TGTGGGCTTTAAAATGGGTTGCCACCAACTTGGGTGGGCTTTAAAATGAGTTGCCACCAACTTGT
GTGGGCTTTGAAATAAGTTACCACCAACTTG
Found at i:35582 original size:52 final size:51
Alignment explanation
Indices: 35441--35589 Score: 217
Period size: 52 Copynumber: 2.9 Consensus size: 51
35431 CGAAATATGA
*
35441 AAATTTGCCTGCATGTATCGATGCATTGAATAGTGTATCGATACATCTGGGC
1 AAATTTGCCTGCATGTATCGATACATTG-ATAGTGTATCGATACATCTGGGC
* *
35493 AAATTTGCCTGCATGTATCGATACATTTTATAATGTATCGATACATCTGGGC
1 AAATTTGCCTGCATGTATCGATACA-TTGATAGTGTATCGATACATCTGGGC
* **
35545 AAATTTTCCTGCATGTATCGATACAAAGATCAGTGTATCGATACA
1 AAATTTGCCTGCATGTATCGATACATTGAT-AGTGTATCGATACA
35590 ATGTATCGAT
Statistics
Matches: 87, Mismatches: 8, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
51 2 0.02
52 83 0.95
53 2 0.02
ACGTcount: A:0.30, C:0.17, G:0.19, T:0.34
Consensus pattern (51 bp):
AAATTTGCCTGCATGTATCGATACATTGATAGTGTATCGATACATCTGGGC
Found at i:35596 original size:13 final size:13
Alignment explanation
Indices: 35578--35602 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
35568 CAAAGATCAG
35578 TGTATCGATACAA
1 TGTATCGATACAA
35591 TGTATCGATACA
1 TGTATCGATACA
35603 TTTAAGTGAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:35680 original size:33 final size:33
Alignment explanation
Indices: 35643--35709 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
35633 AGTAGCTTAA
35643 ATTGTATCGATACAAAAAAATATGTATCGATAC
1 ATTGTATCGATACAAAAAAATATGTATCGATAC
* ***
35676 ATTGTATCGATACAACACTTTATGTATCGATAC
1 ATTGTATCGATACAAAAAAATATGTATCGATAC
35709 A
1 A
35710 AATCGTTGAA
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.40, C:0.15, G:0.12, T:0.33
Consensus pattern (33 bp):
ATTGTATCGATACAAAAAAATATGTATCGATAC
Found at i:35683 original size:13 final size:13
Alignment explanation
Indices: 35665--35689 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
35655 CAAAAAAATA
35665 TGTATCGATACAT
1 TGTATCGATACAT
35678 TGTATCGATACA
1 TGTATCGATACA
35690 ACACTTTATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:36585 original size:52 final size:52
Alignment explanation
Indices: 36453--36664 Score: 208
Period size: 52 Copynumber: 4.2 Consensus size: 52
36443 GAAAAGTGAT
* * * * * * * *
36453 AAAGATGCCAATATGTTGATTCACGGCCAACGATATTGGGCTTAAAGCTGAGAA
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATG-G-A
* * *
36507 AAAGGATGTCAATGTGCTGATTCAAGGCCAGCTACATTGAACTTAAAGATGGA
1 AAAGG-TGCCAATATGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGGA
*
36560 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGAC-T-----T---
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGGA
* *
36603 AAAGGTGCCAATGTGCTGATTCAAGGTCAGCTACATTGGACTTAAAGATGGA
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGGA
36655 AAAGGTGCCA
1 AAAGGTGCCA
36665 CCGACTTGTG
Statistics
Matches: 130, Mismatches: 18, Indels: 22
0.76 0.11 0.13
Matches are distributed among these distances:
43 38 0.29
44 1 0.01
46 1 0.01
49 1 0.01
51 1 0.01
52 42 0.32
53 6 0.05
54 5 0.04
55 35 0.27
ACGTcount: A:0.34, C:0.17, G:0.25, T:0.25
Consensus pattern (52 bp):
AAAGGTGCCAATATGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGGA
Found at i:36621 original size:43 final size:43
Alignment explanation
Indices: 36560--36649 Score: 153
Period size: 43 Copynumber: 2.1 Consensus size: 43
36550 TAAAGATGGA
*
36560 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTACATTGGACTT
* *
36603 AAAGGTGCCAATGTGCTGATTCAAGGTCAGCTACATTGGACTT
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTACATTGGACTT
36646 AAAG
1 AAAG
36650 ATGGAAAAGG
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
43 44 1.00
ACGTcount: A:0.31, C:0.18, G:0.24, T:0.27
Consensus pattern (43 bp):
AAAGGTGCCAATATGCTGATTCAAGGCCAGCTACATTGGACTT
Found at i:36694 original size:30 final size:30
Alignment explanation
Indices: 36653--37103 Score: 359
Period size: 30 Copynumber: 15.1 Consensus size: 30
36643 CTTAAAGATG
* **
36653 GAAAA-GGTGCCACCGACTTGTGGGCTTCG
1 GAAAAGGGTGCCACTGACTTGTGGGCTTTT
*
36682 GAAAAGGGTGCCACTGATTTGTGGGC-TTT
1 GAAAAGGGTGCCACTGACTTGTGGGCTTTT
*
36711 G--AAGGTTGCCACTGACTTGTGGGCTTTT
1 GAAAAGGGTGCCACTGACTTGTGGGCTTTT
***
36739 GAAAAATATGCCACTGACTTGTGGGCTTTT
1 GAAAAGGGTGCCACTGACTTGTGGGCTTTT
*
36769 GAAAAGGGTGCCACTAACTTGTGGGCTTTT
1 GAAAAGGGTGCCACTGACTTGTGGGCTTTT
*
36799 --AAAGGTTGCCACTGACTTGTGGGCTTTT
1 GAAAAGGGTGCCACTGACTTGTGGGCTTTT
***
36827 GAAAAATATGCCACTGACTTGTGGGCTTTT
1 GAAAAGGGTGCCACTGACTTGTGGGCTTTT
* ***
36857 GAAAAGGGTGCCACTAACTTGTGGGCTGAAAAA
1 GAAAAGGGTGCCACTGACTTGTGGGCT---TTT
* * * * **
36890 GAAAAAGAGTGCTA-TAGAGTTGTGAGCTTACAAAA
1 G-AAAAGGGTGCCACT-GACTTGTGGGCTT----TT
* * * * *
36925 GAAAAAGAGTGCCACGGAGTTGTGGACTTTG
1 G-AAAAGGGTGCCACTGACTTGTGGGCTTTT
* * **
36956 GAAAA-GATGCCACCGACTTGTGGGCTTCG
1 GAAAAGGGTGCCACTGACTTGTGGGCTTTT
*
36985 GAAAAGGGTGCCACTGATTTGTGGGC-TTT
1 GAAAAGGGTGCCACTGACTTGTGGGCTTTT
*
37014 G--AAGGTTGCCACTGACTTGTGGGCTTTT
1 GAAAAGGGTGCCACTGACTTGTGGGCTTTT
***
37042 GAAAAAAATGCCACTGACTTGTGGGC-TTT
1 GAAAAGGGTGCCACTGACTTGTGGGCTTTT
*** *
37071 GAAAAAAATGCCACTGACTTGTGGACTTTT
1 GAAAAGGGTGCCACTGACTTGTGGGCTTTT
37101 GAA
1 GAA
37104 GGGTGATGAA
Statistics
Matches: 347, Mismatches: 54, Indels: 41
0.79 0.12 0.09
Matches are distributed among these distances:
27 42 0.12
28 34 0.10
29 60 0.17
30 163 0.47
31 1 0.00
33 2 0.01
34 19 0.05
35 26 0.07
ACGTcount: A:0.26, C:0.16, G:0.29, T:0.28
Consensus pattern (30 bp):
GAAAAGGGTGCCACTGACTTGTGGGCTTTT
Found at i:36816 original size:58 final size:59
Alignment explanation
Indices: 36653--37108 Score: 315
Period size: 57 Copynumber: 7.7 Consensus size: 59
36643 CTTAAAGATG
* ** *
36653 GAAAA-GGTGCCACCGACTTGTGGGCTTCGGAAAAGGGTGCCACTGATTTGTGGGC-TTT
1 GAAAAGGGTGCCACTGACTTGTGGGCTTTTG-AAAGGGTGCCACTGACTTGTGGGCTTTT
* ***
36711 G--AAGGTTGCCACTGACTTGTGGGCTTTTGAAAAATATGCCACTGACTTGTGGGCTTTT
1 GAAAAGGGTGCCACTGACTTGTGGGCTTTTG-AAAGGGTGCCACTGACTTGTGGGCTTTT
* *
36769 GAAAAGGGTGCCACTAACTTGTGGGCTTTT-AAAGGTTGCCACTGACTTGTGGGCTTTT
1 GAAAAGGGTGCCACTGACTTGTGGGCTTTTGAAAGGGTGCCACTGACTTGTGGGCTTTT
*** * ***
36827 GAAAAATATGCCACTGACTTGTGGGCTTTTGAAAAGGGTGCCACTAACTTGTGGGCTGAAAAA
1 GAAAAGGGTGCCACTGACTTGTGGGCTTTTG-AAAGGGTGCCACTGACTTGTGGGCT---TTT
* * * * ** * * * *
36890 GAAAAAGAGTGCTA-TAGAGTTGTGAGCTTACAAAAGAAAAAGAGTGCCACGGAGTTGTGGACTT
1 G-AAAAGGGTGCCACT-GACTTGTGGGCTT----TTG--AAAGGGTGCCACTGACTTGTGGGCTT
*
36954 TG
58 TT
* * ** *
36956 GAAAA-GATGCCACCGACTTGTGGGCTTCGGAAAAGGGTGCCACTGATTTGTGGGC-TTT
1 GAAAAGGGTGCCACTGACTTGTGGGCTTTTG-AAAGGGTGCCACTGACTTGTGGGCTTTT
* ***
37014 G--AAGGTTGCCACTGACTTGTGGGCTTTTGAAAAAAATGCCACTGACTTGTGGGC-TTT
1 GAAAAGGGTGCCACTGACTTGTGGGCTTTTG-AAAGGGTGCCACTGACTTGTGGGCTTTT
*** *
37071 GAAAAAAATGCCACTGACTTGTGGACTTTTG-AAGGGTG
1 GAAAAGGGTGCCACTGACTTGTGGGCTTTTGAAAGGGTG
37109 ATGAATGTCT
Statistics
Matches: 312, Mismatches: 66, Indels: 41
0.74 0.16 0.10
Matches are distributed among these distances:
56 4 0.01
57 92 0.29
58 59 0.19
59 45 0.14
60 49 0.16
63 2 0.01
64 34 0.11
65 4 0.01
66 1 0.00
68 1 0.00
69 21 0.07
ACGTcount: A:0.26, C:0.16, G:0.30, T:0.28
Consensus pattern (59 bp):
GAAAAGGGTGCCACTGACTTGTGGGCTTTTGAAAGGGTGCCACTGACTTGTGGGCTTTT
Found at i:36839 original size:88 final size:88
Alignment explanation
Indices: 36660--36883 Score: 387
Period size: 88 Copynumber: 2.6 Consensus size: 88
36650 ATGGAAAAGG
* ** * * *
36660 TGCCACCGACTTGTGGGCTTCGGAAAAGGGTGCCACTGATTTGTGGGC-TTTGAAGGTTGCCACT
1 TGCCACTGACTTGTGGGCTTTTGAAAAGGGTGCCACTAACTTGTGGGCTTTTAAAGGTTGCCACT
36724 GACTTGTGGGCTTTTGAAAAATA
66 GACTTGTGGGCTTTTGAAAAATA
36747 TGCCACTGACTTGTGGGCTTTTGAAAAGGGTGCCACTAACTTGTGGGCTTTTAAAGGTTGCCACT
1 TGCCACTGACTTGTGGGCTTTTGAAAAGGGTGCCACTAACTTGTGGGCTTTTAAAGGTTGCCACT
36812 GACTTGTGGGCTTTTGAAAAATA
66 GACTTGTGGGCTTTTGAAAAATA
36835 TGCCACTGACTTGTGGGCTTTTGAAAAGGGTGCCACTAACTTGTGGGCT
1 TGCCACTGACTTGTGGGCTTTTGAAAAGGGTGCCACTAACTTGTGGGCT
36884 GAAAAAGAAA
Statistics
Matches: 130, Mismatches: 6, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
87 43 0.33
88 87 0.67
ACGTcount: A:0.21, C:0.18, G:0.29, T:0.31
Consensus pattern (88 bp):
TGCCACTGACTTGTGGGCTTTTGAAAAGGGTGCCACTAACTTGTGGGCTTTTAAAGGTTGCCACT
GACTTGTGGGCTTTTGAAAAATA
Found at i:37026 original size:27 final size:27
Alignment explanation
Indices: 36934--37105 Score: 119
Period size: 29 Copynumber: 6.0 Consensus size: 27
36924 AGAAAAAGAG
* * * *
36934 TGCCACGGAGTTGTGGACTTTGGAAAAGA
1 TGCCACTGACTTGTGGGCTTT-G-AAGGA
* * *
36963 TGCCACCGACTTGTGGGCTTCGGAAAAGGG
1 TGCCACTGACTTGTGGGCTT-TG--AAGGA
* *
36993 TGCCACTGATTTGTGGGCTTTGAAGGT
1 TGCCACTGACTTGTGGGCTTTGAAGGA
**
37020 TGCCACTGACTTGTGGGCTTTTGAAAAAAA
1 TGCCACTGACTTGTGGGC-TTTG--AAGGA
**
37050 TGCCACTGACTTGTGGGCTTTGAAAAAAA
1 TGCCACTGACTTGTGGGCTTTG--AAGGA
*
37079 TGCCACTGACTTGTGGACTTTTGAAGG
1 TGCCACTGACTTGTGGGC-TTTGAAGG
37106 GTGATGAATG
Statistics
Matches: 120, Mismatches: 17, Indels: 13
0.80 0.11 0.09
Matches are distributed among these distances:
27 21 0.17
28 6 0.05
29 47 0.39
30 46 0.38
ACGTcount: A:0.24, C:0.17, G:0.30, T:0.28
Consensus pattern (27 bp):
TGCCACTGACTTGTGGGCTTTGAAGGA
Found at i:38546 original size:1 final size:1
Alignment explanation
Indices: 38542--38660 Score: 94
Period size: 1 Copynumber: 119.0 Consensus size: 1
38532 CCGGACCCCC
* * * * * * * *
38542 TTTTTTTGTTTTTGTTTGTTTTTTTATTGTTTTTGTTTTTTTTTGTTTTTTTTTTTTTTTTTTTG
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
** *** * * *
38607 TTTTTTTCATTTTTTTCGCTTTTTTTTTGTTTTGTTTTTTTTTTTTGTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
38661 GGAGGACGCC
Statistics
Matches: 89, Mismatches: 29, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
1 89 1.00
ACGTcount: A:0.02, C:0.03, G:0.09, T:0.87
Consensus pattern (1 bp):
T
Found at i:38561 original size:10 final size:9
Alignment explanation
Indices: 38542--38660 Score: 109
Period size: 9 Copynumber: 12.7 Consensus size: 9
38532 CCGGACCCCC
38542 TTTTTTTGT
1 TTTTTTTGT
38551 TTTTGTTTGTT
1 TTTT-TTTG-T
38562 TTTTTATTGT
1 TTTTT-TTGT
38572 TTTTGTTT-T
1 TTTT-TTTGT
38581 TTTTTGTT-T
1 TTTTT-TTGT
*
38590 TTTTTTTTT
1 TTTTTTTGT
38599 TTTTTTTGT
1 TTTTTTTGT
**
38608 TTTTTTCAT
1 TTTTTTTGT
*
38617 TTTTTTCGCTT
1 TTTTTTTG--T
38628 TTTTTTTGT
1 TTTTTTTGT
38637 TTTGTTTT-T
1 TTT-TTTTGT
38646 TTTTTTTGT
1 TTTTTTTGT
38655 TTTTTT
1 TTTTTT
38661 GGAGGACGCC
Statistics
Matches: 95, Mismatches: 5, Indels: 20
0.79 0.04 0.17
Matches are distributed among these distances:
8 7 0.07
9 55 0.58
10 16 0.17
11 17 0.18
ACGTcount: A:0.02, C:0.03, G:0.09, T:0.87
Consensus pattern (9 bp):
TTTTTTTGT
Found at i:38571 original size:21 final size:19
Alignment explanation
Indices: 38542--38660 Score: 120
Period size: 18 Copynumber: 6.1 Consensus size: 19
38532 CCGGACCCCC
38542 TTTTTTTGTTTTTGTTTGTT
1 TTTTTTTGTTTTTGTTT-TT
38562 TTTTTATTGTTTTTGTTTTT
1 TTTTT-TTGTTTTTGTTTTT
*
38582 TTTTGTT-TTTTT-TTTTT
1 TTTTTTTGTTTTTGTTTTT
38599 TTTTTTTGTTTTT-TTCATTT
1 TTTTTTTGTTTTTGTT--TTT
* *
38619 TTTTCGCTTTTTTTTTGTTTTG
1 TTTT---TTTGTTTTTGTTTTT
38641 TTTTTTT-TTTTTGTTTTT
1 TTTTTTTGTTTTTGTTTTT
38659 TT
1 TT
38661 GGAGGACGCC
Statistics
Matches: 86, Mismatches: 5, Indels: 18
0.79 0.05 0.17
Matches are distributed among these distances:
17 11 0.13
18 24 0.28
19 5 0.06
20 18 0.21
21 12 0.14
22 6 0.07
23 8 0.09
24 2 0.02
ACGTcount: A:0.02, C:0.03, G:0.09, T:0.87
Consensus pattern (19 bp):
TTTTTTTGTTTTTGTTTTT
Found at i:38607 original size:47 final size:47
Alignment explanation
Indices: 38542--38660 Score: 161
Period size: 47 Copynumber: 2.5 Consensus size: 47
38532 CCGGACCCCC
* * * *
38542 TTTTTTTGTTTTTGTTTGTTTTTTT-ATTGTTTTT-GTTTTTTTTTGTT
1 TTTTTTTTTTTTTTTTTGTTTTTTTCATT-TTTTTCGCTTTTTTTT-TG
38589 TTTTTTTTTTTTTTTTTGTTTTTTTCATTTTTTTCGCTTTTTTTTTG
1 TTTTTTTTTTTTTTTTTGTTTTTTTCATTTTTTTCGCTTTTTTTTTG
*
38636 TTTTGTTTTTTTTTTTTGTTTTTTT
1 TTTTTTTTTTTTTTTTTGTTTTTTT
38661 GGAGGACGCC
Statistics
Matches: 65, Mismatches: 5, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
47 53 0.82
48 12 0.18
ACGTcount: A:0.02, C:0.03, G:0.09, T:0.87
Consensus pattern (47 bp):
TTTTTTTTTTTTTTTTTGTTTTTTTCATTTTTTTCGCTTTTTTTTTG
Found at i:48363 original size:10 final size:10
Alignment explanation
Indices: 48348--48374 Score: 54
Period size: 10 Copynumber: 2.7 Consensus size: 10
48338 ATGTATCAAG
48348 CAAAAACAAA
1 CAAAAACAAA
48358 CAAAAACAAA
1 CAAAAACAAA
48368 CAAAAAC
1 CAAAAAC
48375 TTAGTTAGCA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 17 1.00
ACGTcount: A:0.78, C:0.22, G:0.00, T:0.00
Consensus pattern (10 bp):
CAAAAACAAA
Found at i:52582 original size:52 final size:52
Alignment explanation
Indices: 52504--52704 Score: 341
Period size: 52 Copynumber: 3.9 Consensus size: 52
52494 CGAAATATGA
*
52504 AAATTTGCCTGCATGTATCGATACATTGAATAGTGTATCGATACATCTGGGC
1 AAATTTGCCTGCATGTATCGATACATTGTATAGTGTATCGATACATCTGGGC
*
52556 AAATTTGCCTGCATGTATCGATACATTTTATAGTGTATCGATACATCTGGGC
1 AAATTTGCCTGCATGTATCGATACATTGTATAGTGTATCGATACATCTGGGC
*
52608 AAATTTGCCTGCATGTATCGATACATTTTATAGTGTATCGATACATCTGGGC
1 AAATTTGCCTGCATGTATCGATACATTGTATAGTGTATCGATACATCTGGGC
**
52660 AAATTTGCCTGCATGTATCGATACAAAG-ATCAGTGTATCGATACA
1 AAATTTGCCTGCATGTATCGATACATTGTAT-AGTGTATCGATACA
52705 ATGTATCGAT
Statistics
Matches: 143, Mismatches: 5, Indels: 2
0.95 0.03 0.01
Matches are distributed among these distances:
51 2 0.01
52 141 0.99
ACGTcount: A:0.29, C:0.17, G:0.19, T:0.34
Consensus pattern (52 bp):
AAATTTGCCTGCATGTATCGATACATTGTATAGTGTATCGATACATCTGGGC
Found at i:52711 original size:13 final size:13
Alignment explanation
Indices: 52693--52717 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
52683 CAAAGATCAG
52693 TGTATCGATACAA
1 TGTATCGATACAA
52706 TGTATCGATACA
1 TGTATCGATACA
52718 TTTAAGTGAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:52798 original size:13 final size:13
Alignment explanation
Indices: 52780--52804 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
52770 CAAAAAAACA
52780 TGTATCGATACAT
1 TGTATCGATACAT
52793 TGTATCGATACA
1 TGTATCGATACA
52805 ACACTTTATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:52903 original size:21 final size:21
Alignment explanation
Indices: 52862--52903 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
52852 GTTGGGACCT
*
52862 TGTATCGATACATTTTAACAA
1 TGTATCGATACATTTGAACAA
*
52883 TGTATCGATACATTTGGACAA
1 TGTATCGATACATTTGAACAA
52904 AAATGTAATT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.36, C:0.14, G:0.14, T:0.36
Consensus pattern (21 bp):
TGTATCGATACATTTGAACAA
Found at i:57890 original size:31 final size:32
Alignment explanation
Indices: 57784--58232 Score: 590
Period size: 31 Copynumber: 14.3 Consensus size: 32
57774 CTGCAACTTA
* *
57784 CAACCCA-TTCCAAGCCC-CACACG-C-GTGG
1 CAACCCATTTCAAAGCCCACACAAGTCGGTGG
*
57812 CAACCCATTCCAAAGCCCCACACAAGTCGGTGG
1 CAACCCATTTCAAAG-CCCACACAAGTCGGTGG
57845 CAACCCATTTCAAAGCCCAACACAAGT-GGTGG
1 CAACCCATTTCAAAGCCC-ACACAAGTCGGTGG
57877 CAACCC-TTTCAAAGCCCACACAAAGTCGGTGG
1 CAACCCATTTCAAAGCCCACAC-AAGTCGGTGG
57909 CAACCCAATTTC-AAGCCCACACAAGTCGTGCTGG
1 CAACCC-ATTTCAAAGCCCACACAAGTCG-G-TGG
* *
57943 -AACCCATTTCAAAGCCTATACAAGTCGGTGG
1 CAACCCATTTCAAAGCCCACACAAGTCGGTGG
57974 CAACCCATTTCAAAGCCCACACAAGTCCGGTGG
1 CAACCCATTTCAAAGCCCACACAAGT-CGGTGG
58007 CAA-CCATTTCAAAGCCCACACAAGTC-GTGG
1 CAACCCATTTCAAAGCCCACACAAGTCGGTGG
*
58037 CAACCCATTTCAAAGCCCACACAAGCCGGTGG
1 CAACCCATTTCAAAGCCCACACAAGTCGGTGG
*
58069 CAACCCA-TTCAAAGCCCACACAAGTAGGTGG
1 CAACCCATTTCAAAGCCCACACAAGTCGGTGG
58100 CAACCCATTTCAAAGCCCACA-AAGTCGGTGG
1 CAACCCATTTCAAAGCCCACACAAGTCGGTGG
** * *
58131 CAACCTTTTTCAAAGCCC-CAGAAGTTGGTGG
1 CAACCCATTTCAAAGCCCACACAAGTCGGTGG
*
58162 CAACCCATTT-AAAGCCCACGCAAGTCGGTGG
1 CAACCCATTTCAAAGCCCACACAAGTCGGTGG
* *
58193 CAACCCA-TT-AAAGCCCACGCAAGTCAGTGG
1 CAACCCATTTCAAAGCCCACACAAGTCGGTGG
58223 CAACCC-TTTC
1 CAACCCATTTC
58233 CAAATCAACC
Statistics
Matches: 378, Mismatches: 21, Indels: 41
0.86 0.05 0.09
Matches are distributed among these distances:
28 7 0.02
29 5 0.01
30 53 0.14
31 134 0.35
32 107 0.28
33 65 0.17
34 7 0.02
ACGTcount: A:0.31, C:0.34, G:0.19, T:0.16
Consensus pattern (32 bp):
CAACCCATTTCAAAGCCCACACAAGTCGGTGG
Done.