Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Scaffold1758

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2595
ACGTcount: A:0.36, C:0.15, G:0.15, T:0.34


Found at i:1179 original size:31 final size:30

Alignment explanation


    Indices: 1141--1203  Score: 117
    Period size: 31  Copynumber: 2.1  Consensus size: 30

       1131 AAAGGACACA

                                           
       1141 TTGAAGGCATTAGAACCATTAGTAACAATTC
          1 TTGAAGGCATTAGAACCATTAGT-ACAATTC

                                          
       1172 TTGAAGGCATTAGAACCATTAGTACAATTC
          1 TTGAAGGCATTAGAACCATTAGTACAATTC

              
       1202 TT
          1 TT

       1204 TATCTAATAT


Statistics
Matches: 32,  Mismatches: 0, Indels: 1
        0.97            0.00        0.03

Matches are distributed among these distances:
  30    9  0.28
  31   23  0.72

ACGTcount: A:0.37, C:0.16, G:0.16, T:0.32


Consensus pattern (30 bp):   
TTGAAGGCATTAGAACCATTAGTACAATTC
Done.