Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold176
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 960511
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 25 characters in sequence are not A, C, G, or T
File 1 of 6
Found at i:7167 original size:8 final size:8
Alignment explanation
Indices: 7154--7184 Score: 53
Period size: 8 Copynumber: 3.8 Consensus size: 8
7144 ATTTGATTAA
7154 ATTTTGTG
1 ATTTTGTG
7162 ATTTTGTG
1 ATTTTGTG
7170 ATTTTGTG
1 ATTTTGTG
7178 ATGTTTG
1 AT-TTTG
7185 ATGTTGAAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
8 18 0.82
9 4 0.18
ACGTcount: A:0.13, C:0.00, G:0.26, T:0.61
Consensus pattern (8 bp):
ATTTTGTG
Found at i:7400 original size:13 final size:13
Alignment explanation
Indices: 7382--7419 Score: 58
Period size: 13 Copynumber: 2.9 Consensus size: 13
7372 CAGCATTCTC
* *
7382 TGTATCAATACAT
1 TGTATCGATACAG
7395 TGTATCGATACAG
1 TGTATCGATACAG
7408 TGTATCGATACA
1 TGTATCGATACA
7420 AAAGGTTTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
13 23 1.00
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.34
Consensus pattern (13 bp):
TGTATCGATACAG
Found at i:9884 original size:20 final size:20
Alignment explanation
Indices: 9839--9912 Score: 62
Period size: 20 Copynumber: 3.6 Consensus size: 20
9829 ACACCTTTAG
* * *
9839 ATGTATCGATACATAATGCAC
1 ATGTATCGATACATGA-CCAA
9860 A-GTATCGATACATGACCAA
1 ATGTATCGATACATGACCAA
* *
9879 ATGTATCGATACTTG-CGAA
1 ATGTATCGATACATGACCAA
9898 GATTGTATCGATACA
1 -A-TGTATCGATACA
9913 GGTGATTGGC
Statistics
Matches: 44, Mismatches: 6, Indels: 6
0.79 0.11 0.11
Matches are distributed among these distances:
19 6 0.14
20 26 0.59
21 12 0.27
ACGTcount: A:0.36, C:0.18, G:0.18, T:0.28
Consensus pattern (20 bp):
ATGTATCGATACATGACCAA
Found at i:9999 original size:33 final size:33
Alignment explanation
Indices: 9942--10010 Score: 86
Period size: 33 Copynumber: 2.1 Consensus size: 33
9932 CCTTAACTGT
* **
9942 TTGTATCGATATAGACAAAGATGTATTGATACA
1 TTGTATCGATACAGACAAAGATGTATCAATACA
*
9975 TTGTATCGATACATGACCAA-ATGTATCAATACA
1 TTGTATCGATACA-GACAAAGATGTATCAATACA
10008 TTG
1 TTG
10011 GCTTGTAACG
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
33 26 0.84
34 5 0.16
ACGTcount: A:0.38, C:0.13, G:0.16, T:0.33
Consensus pattern (33 bp):
TTGTATCGATACAGACAAAGATGTATCAATACA
Found at i:14704 original size:18 final size:17
Alignment explanation
Indices: 14677--14716 Score: 55
Period size: 18 Copynumber: 2.3 Consensus size: 17
14667 AAAATAGAGC
14677 AAAAAAAAAGAGGAAA-A
1 AAAAAAAAAGA-GAAAGA
14694 AAAAGAAAAAGAGAAAGA
1 AAAA-AAAAAGAGAAAGA
14712 AAAAA
1 AAAAA
14717 TGAGTGGATT
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
17 9 0.43
18 12 0.57
ACGTcount: A:0.82, C:0.00, G:0.17, T:0.00
Consensus pattern (17 bp):
AAAAAAAAAGAGAAAGA
Found at i:15492 original size:57 final size:56
Alignment explanation
Indices: 15339--15542 Score: 205
Period size: 57 Copynumber: 3.6 Consensus size: 56
15329 TCCCATAATC
* * * * * *
15339 TTTTCATGCATGTTAAGTACTATTATGCATTTTCATGCATTTTAGGGTTATTTAAGGTA
1 TTTTCATGCAT-TT-AGGACTATTATGTAATTTCATGCATTTTA-GGTCATTTAAAGCA
* * **
15398 TTTTGCATGCATTTAAGAATTATTATGCCATTTCATGCATTTTAGGTCATTTAAAGCA
1 TTTT-CATGCATTT-AGGACTATTATGTAATTTCATGCATTTTAGGTCATTTAAAGCA
* * *
15456 TTTTCCATGTATTTAGGACTATTATGTTATTTCATGCATTTTAGGTCATTT-AAGGA
1 TTTT-CATGCATTTAGGACTATTATGTAATTTCATGCATTTTAGGTCATTTAAAGCA
*
15512 ATTT-ATGCATTTAGAGACTATTATGTAATTT
1 TTTTCATGCATTTAG-GACTATTATGTAATTT
15543 AATTTATCTT
Statistics
Matches: 126, Mismatches: 17, Indels: 8
0.83 0.11 0.05
Matches are distributed among these distances:
54 9 0.07
55 15 0.12
56 7 0.06
57 33 0.26
58 23 0.18
59 32 0.25
60 7 0.06
ACGTcount: A:0.27, C:0.11, G:0.15, T:0.47
Consensus pattern (56 bp):
TTTTCATGCATTTAGGACTATTATGTAATTTCATGCATTTTAGGTCATTTAAAGCA
Found at i:15541 original size:27 final size:26
Alignment explanation
Indices: 15466--15543 Score: 77
Period size: 27 Copynumber: 2.9 Consensus size: 26
15456 TTTTCCATGT
*
15466 ATTTAGGACTATTATGTTATTTCATGC
1 ATTTAGGACTATTATGTAATTT-ATGC
* * *
15493 ATTTTAGGTC-ATTTAAGGAATTTATGC
1 A-TTTAGGACTA-TTATGTAATTTATGC
15520 ATTTAGAGACTATTATGTAATTTA
1 ATTTAG-GACTATTATGTAATTTA
15544 ATTTATCTTA
Statistics
Matches: 40, Mismatches: 7, Indels: 8
0.73 0.13 0.15
Matches are distributed among these distances:
26 5 0.12
27 19 0.47
28 16 0.40
ACGTcount: A:0.31, C:0.08, G:0.15, T:0.46
Consensus pattern (26 bp):
ATTTAGGACTATTATGTAATTTATGC
Found at i:17729 original size:15 final size:15
Alignment explanation
Indices: 17702--17742 Score: 50
Period size: 15 Copynumber: 2.8 Consensus size: 15
17692 CAAAAAAAAA
17702 TTAAAAAAG--AGAG
1 TTAAAAAAGAAAGAG
17715 TTAAAAAAGAAAGAG
1 TTAAAAAAGAAAGAG
*
17730 TCAAAAAATGAAA
1 TTAAAAAA-GAAA
17743 AAAATAATAT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
13 9 0.38
15 11 0.46
16 4 0.17
ACGTcount: A:0.66, C:0.02, G:0.17, T:0.15
Consensus pattern (15 bp):
TTAAAAAAGAAAGAG
Found at i:18273 original size:15 final size:15
Alignment explanation
Indices: 18253--18283 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
18243 ACATGAGATT
18253 TGAGAGATAAAGGGG
1 TGAGAGATAAAGGGG
18268 TGAGAGATAAAGGGG
1 TGAGAGATAAAGGGG
18283 T
1 T
18284 AATTATTCAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.39, C:0.00, G:0.45, T:0.16
Consensus pattern (15 bp):
TGAGAGATAAAGGGG
Found at i:21351 original size:14 final size:12
Alignment explanation
Indices: 21324--21357 Score: 50
Period size: 14 Copynumber: 2.7 Consensus size: 12
21314 AGACTCTATC
21324 AAACAAAAAAAA
1 AAACAAAAAAAA
21336 AAACAAAATGAAAA
1 AAACAAAA--AAAA
21350 AAACAAAA
1 AAACAAAA
21358 GCCTTTTACC
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
12 8 0.40
14 12 0.60
ACGTcount: A:0.85, C:0.09, G:0.03, T:0.03
Consensus pattern (12 bp):
AAACAAAAAAAA
Found at i:22086 original size:252 final size:250
Alignment explanation
Indices: 21610--22090 Score: 716
Period size: 250 Copynumber: 1.9 Consensus size: 250
21600 CAAAAACCTT
* *
21610 TTGTCCATAAAGATAAATCCTTTTCAATCTAATGCCTAATAGACGAAGCATTAAATTCGAGGTGT
1 TTGTCCATAAAGATAAATCCTTTTCAATCTAATGCCTAATAGACGAAGCATGAAATTCAAGGTGT
* **
21675 TTTTTATGCTAATTTGATTTCTTTCTTGGAAGTCCAACTAACCAAGATTTGTTGGTAGCAACAGA
66 TTCTTATGCTAATTCAATTTCTTTCTTGGAAGTCCAACTAACCAAGATTTGTTGGTAGCAACAGA
* *
21740 GCTGATAATCTCAAGGGGCATACATTAAACCAAAACATTGAAAAAAATCCAAAAAAATTCAAATA
131 GCTAATAATCTCAAGGAGCATACATTAAACCAAAACATTGAAAAAAATCCAAAAAAATTCAAATA
21805 AAATTAAAAAAAAAATCGAATGCAACATTGTATATGATTAAGGTACTTAAAATGA
196 AAATTAAAAAAAAAATCGAATGCAACATTGTATATGATTAAGGTACTTAAAATGA
* * * * *
21860 TTGTCCATAAAGATAAATCTTTTTCAATCTAATGCTTGATAGA-TAAGCCATGAAATTCAAGTTG
1 TTGTCCATAAAGATAAATCCTTTTCAATCTAATGCCTAATAGACGAAG-CATGAAATTCAAGGTG
* *
21924 TTTCTTATGCTAATTCAATTTCTTTCTTGGAAGTCCAACTAGAACCAAGATTTGTTGGTGGCAAG
65 TTTCTTATGCTAATTCAATTTCTTTCTTGGAAGTCCAACT--AACCAAGATTTGTTGGTAGCAAC
* * * *
21989 GGAGCTAATAATCTCAAGGAGCATCCATTAAGCTAAAACATTGAAAAAAAATCCAAAAAAGATTC
128 AGAGCTAATAATCTCAAGGAGCATACATTAAACCAAAACATTG-AAAAAAATCCAAAAAA-ATTC
* *
22054 AAA-AAAA-TAAAAAACAAATCGAGTGCAACATTGTATA
191 AAATAAAATTAAAAAAAAAATCGAATGCAACATTGTATA
22091 AGTAAGGTAT
Statistics
Matches: 206, Mismatches: 20, Indels: 8
0.88 0.09 0.03
Matches are distributed among these distances:
249 3 0.01
250 90 0.44
252 86 0.42
253 20 0.10
254 7 0.03
ACGTcount: A:0.41, C:0.15, G:0.14, T:0.30
Consensus pattern (250 bp):
TTGTCCATAAAGATAAATCCTTTTCAATCTAATGCCTAATAGACGAAGCATGAAATTCAAGGTGT
TTCTTATGCTAATTCAATTTCTTTCTTGGAAGTCCAACTAACCAAGATTTGTTGGTAGCAACAGA
GCTAATAATCTCAAGGAGCATACATTAAACCAAAACATTGAAAAAAATCCAAAAAAATTCAAATA
AAATTAAAAAAAAAATCGAATGCAACATTGTATATGATTAAGGTACTTAAAATGA
Found at i:24037 original size:56 final size:56
Alignment explanation
Indices: 23971--24076 Score: 169
Period size: 56 Copynumber: 1.9 Consensus size: 56
23961 GACCCTAGAG
* *
23971 TAACTAATAAGTTTCATCCTAATTGAAATTAACACCAAAAT-AAGAAAGCCTAAGAA
1 TAACTAATAAGTTTCATCCCAATTG-AATTAACACCAAAATGAAAAAAGCCTAAGAA
*
24027 TAACTTATAAGTTTCATCCCAATTGAATTAACACCAAAATGAAAAAAGCC
1 TAACTAATAAGTTTCATCCCAATTGAATTAACACCAAAATGAAAAAAGCC
24077 AAAAGAAACT
Statistics
Matches: 46, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
55 15 0.33
56 31 0.67
ACGTcount: A:0.48, C:0.18, G:0.08, T:0.25
Consensus pattern (56 bp):
TAACTAATAAGTTTCATCCCAATTGAATTAACACCAAAATGAAAAAAGCCTAAGAA
Found at i:27532 original size:20 final size:20
Alignment explanation
Indices: 27509--27603 Score: 136
Period size: 20 Copynumber: 4.8 Consensus size: 20
27499 AAAAAGCTAG
*
27509 AATGTATCGATACATTGAAG
1 AATGTATCGATACATTGAAA
* * *
27529 AATGTATCGATGCATTCATA
1 AATGTATCGATACATTGAAA
*
27549 CATGTATCGATACATTGAAA
1 AATGTATCGATACATTGAAA
27569 AATGTATCGATACATTGAAA
1 AATGTATCGATACATTGAAA
*
27589 AATGTGTCGATACAT
1 AATGTATCGATACAT
27604 CTAGGTACTT
Statistics
Matches: 65, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 65 1.00
ACGTcount: A:0.39, C:0.13, G:0.17, T:0.32
Consensus pattern (20 bp):
AATGTATCGATACATTGAAA
Found at i:28574 original size:28 final size:28
Alignment explanation
Indices: 28530--29366 Score: 647
Period size: 28 Copynumber: 29.8 Consensus size: 28
28520 AAAGAGTTAT
*
28530 CACTGGCTTGTGGGCTTTGAAAGGGTGC
1 CACTGACTTGTGGGCTTTGAAAGGGTGC
* * * * **
28558 CACTAACTTATAGGCTTCGAAAATGTGC
1 CACTGACTTGTGGGCTTTGAAAGGGTGC
*
28586 CACTGACTTGTGGGCTTTGAAAGGATGC
1 CACTGACTTGTGGGCTTTGAAAGGGTGC
* * * *
28614 CATTGATTTTTGGGCTTTGAAAGGATGC
1 CACTGACTTGTGGGCTTTGAAAGGGTGC
* *
28642 CATTGATTTGTGGGCTTTGAAAGGGTGC
1 CACTGACTTGTGGGCTTTGAAAGGGTGC
* * *
28670 CACTGATTTATGGGCTTTGAAAAGAGTGC
1 CACTGACTTGTGGGCTTTG-AAAGGGTGC
* *
28699 CATTGACTTGTGGGCTTTGAAAGAGTGC
1 CACTGACTTGTGGGCTTTGAAAGGGTGC
* ** * ** *
28727 CACT--TTTGAAAGG--ATGCCA--CTG-
1 CACTGACTTG-TGGGCTTTGAAAGGGTGC
* *** *** *
28749 -ACTTG--TAG-GCTTTGAAAAGA-GTTGC
1 CAC-TGACTTGTGGGCTTTGAA-AGGGTGC
* * * *
28774 CACCGACTCGTGGGCTTTGAAAGGATAC
1 CACTGACTTGTGGGCTTTGAAAGGGTGC
* *
28802 CACTAACTTGTGGGCTTTGAAAAGAGTTGC
1 CACTGACTTGTGGGCTTTG-AAAG-GGTGC
* * * * *
28832 CACCGACTCGTAGGCTTTGAAAGGATGA
1 CACTGACTTGTGGGCTTTGAAAGGGTGC
* * * *
28860 CACTAATTTGTGGGCTTTAAAAAGAGTGC
1 CACTGACTTGTGGGCTTT-GAAAGGGTGC
* *
28889 CATTGACTTGTGGGCTTTAAAAGGGTGC
1 CACTGACTTGTGGGCTTTGAAAGGGTGC
*
28917 CACTGACTTGTGGGCTTTGGAAAGAGTGC
1 CACTGACTTGTGGGCTTT-GAAAGGGTGC
* *
28946 CACTAACTTGTGGGCTTTAAAAGGGTGC
1 CACTGACTTGTGGGCTTTGAAAGGGTGC
* * *
28974 CACTGATTTATGGGCTTTGAAAAGAGTGC
1 CACTGACTTGTGGGCTTTG-AAAGGGTGC
* **
29003 CATTGACTTGTGGGCTTTGAAACAGTGC
1 CACTGACTTGTGGGCTTTGAAAGGGTGC
*
29031 CACTGACTTGTGGGCTTTGAAAGGATGC
1 CACTGACTTGTGGGCTTTGAAAGGGTGC
* *
29059 CACTGACTTGTAGGCTTTGAAAAGAGTTGC
1 CACTGACTTGTGGGCTTTG-AAAG-GGTGC
* * * *
29089 CACCGACTCGTGGGCTTTGAAAGGATAC
1 CACTGACTTGTGGGCTTTGAAAGGGTGC
* *
29117 CACTAACTTGTGGGCTTTGAAAAGAGTTGC
1 CACTGACTTGTGGGCTTTG-AAAG-GGTGC
* * * *
29147 CA-TCGACTCGTAGGCTTTGAAAGGATGA
1 CACT-GACTTGTGGGCTTTGAAAGGGTGC
* * * * *
29175 CACTAATTTGTGGGTTTTAAAAAGAGTGC
1 CACTGACTTGTGGGCTTT-GAAAGGGTGC
* *
29204 CATTGACTTGTGGGCTTTAAAAGGGTGC
1 CACTGACTTGTGGGCTTTGAAAGGGTGC
* *
29232 CACTAACTTGTGGGCTTTGGAAAGAGTGC
1 CACTGACTTGTGGGCTTT-GAAAGGGTGC
* *
29261 CACTGATTTGTGGGCTTTGGAAAGAGTGC
1 CACTGACTTGTGGGCTTT-GAAAGGGTGC
*
29290 CACTAACTTGTGGGCTTTGAAAGGGTGC
1 CACTGACTTGTGGGCTTTGAAAGGGTGC
*
29318 CACTAACTTGTGGGCTTTGAAAGGGTGC
1 CACTGACTTGTGGGCTTTGAAAGGGTGC
*
29346 CACTGACTTATGGGCTTTGAA
1 CACTGACTTGTGGGCTTTGAA
29367 GAGATGAACG
Statistics
Matches: 644, Mismatches: 138, Indels: 54
0.77 0.17 0.06
Matches are distributed among these distances:
21 2 0.00
22 3 0.00
23 3 0.00
24 2 0.00
25 4 0.01
26 5 0.01
27 5 0.01
28 374 0.58
29 191 0.30
30 55 0.09
ACGTcount: A:0.24, C:0.17, G:0.29, T:0.30
Consensus pattern (28 bp):
CACTGACTTGTGGGCTTTGAAAGGGTGC
Found at i:28721 original size:57 final size:57
Alignment explanation
Indices: 28508--29366 Score: 815
Period size: 57 Copynumber: 15.2 Consensus size: 57
28498 CATCGACTCG
** * *
28508 TGTGGGCTTTGAAAAGAGTTATCACTGGCTTGTGGGCTTTGAAAGGGTGCCACTAACT
1 TGTGGGCTTTGAAAAGAG-TGCCACTGACTTGTGGGCTTTGAAAGGGTGCCACTGACT
* * * * * * *
28566 TATAGGCTTCGAAAA-TGTGCCACTGACTTGTGGGCTTTGAAAGGATGCCATTGATT
1 TGTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGCTTTGAAAGGGTGCCACTGACT
* * * * *
28622 TTTGGGCTTTGAAAGGA-TGCCATTGATTTGTGGGCTTTGAAAGGGTGCCACTGATT
1 TGTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGCTTTGAAAGGGTGCCACTGACT
* * *
28678 TATGGGCTTTGAAAAGAGTGCCATTGACTTGTGGGCTTTGAAAGAGTG-C-C--AC-
1 TGTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGCTTTGAAAGGGTGCCACTGACT
* * * *
28730 --T----TTTGAAAGGA-TGCCACTGACTTGTAGGCTTTGAAAAGAGTTGCCACCGACT
1 TGTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGCTTTG-AAAG-GGTGCCACTGACT
* * * * * *
28782 CGTGGGCTTTGAAAGGA-TACCACTAACTTGTGGGCTTTGAAAAGAGTTGCCACCGACT
1 TGTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGCTTTG-AAAG-GGTGCCACTGACT
* * * * * * * * *
28840 CGTAGGCTTTGAAAGGA-TGACACTAATTTGTGGGCTTTAAAAAGAGTGCCATTGACT
1 TGTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGCTTT-GAAAGGGTGCCACTGACT
* * *
28897 TGTGGGCTTT-AAAAGGGTGCCACTGACTTGTGGGCTTTGGAAAGAGTGCCACTAACT
1 TGTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGCTTT-GAAAGGGTGCCACTGACT
* * * * *
28954 TGTGGGCTTT-AAAAGGGTGCCACTGATTTATGGGCTTTGAAAAGAGTGCCATTGACT
1 TGTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGCTTTG-AAAGGGTGCCACTGACT
* *
29011 TGTGGGCTTTG-AAACAGTGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTGACT
1 TGTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGCTTTGAAAGGGTGCCACTGACT
* * * * * *
29067 TGTAGGCTTTGAAAAGAGTTGCCACCGACTCGTGGGCTTTGAAAGGATACCACTAACT
1 TGTGGGCTTTGAAAAGAG-TGCCACTGACTTGTGGGCTTTGAAAGGGTGCCACTGACT
* * * * * *
29125 TGTGGGCTTTGAAAAGAGTTGCCA-TCGACTCGTAGGCTTTGAAAGGATGACACTAATT
1 TGTGGGCTTTGAAAAGAG-TGCCACT-GACTTGTGGGCTTTGAAAGGGTGCCACTGACT
* * * * *
29183 TGTGGGTTTTAAAAAGAGTGCCATTGACTTGTGGGCTTTAAAAGGGTGCCACTAACT
1 TGTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGCTTTGAAAGGGTGCCACTGACT
* * * *
29240 TGTGGGCTTTGGAAAGAGTGCCACTGATTTGTGGGCTTTGGAAAGAGTGCCACTAACT
1 TGTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGCTTT-GAAAGGGTGCCACTGACT
* *
29298 TGTGGGCTTTG-AAAGGGTGCCACTAACTTGTGGGCTTTGAAAGGGTGCCACTGACT
1 TGTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGCTTTGAAAGGGTGCCACTGACT
*
29354 TATGGGCTTTGAA
1 TGTGGGCTTTGAA
29367 GAGATGAACG
Statistics
Matches: 679, Mismatches: 97, Indels: 51
0.82 0.12 0.06
Matches are distributed among these distances:
45 20 0.03
46 13 0.02
47 2 0.00
48 1 0.00
49 1 0.00
50 1 0.00
51 2 0.00
53 1 0.00
54 1 0.00
55 1 0.00
56 149 0.22
57 259 0.38
58 228 0.34
ACGTcount: A:0.24, C:0.16, G:0.29, T:0.30
Consensus pattern (57 bp):
TGTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGCTTTGAAAGGGTGCCACTGACT
Found at i:28736 original size:17 final size:17
Alignment explanation
Indices: 28714--28747 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
28704 ACTTGTGGGC
28714 TTTGAAA-GAGTGCCACT
1 TTTGAAAGGA-TGCCACT
28731 TTTGAAAGGATGCCACT
1 TTTGAAAGGATGCCACT
28748 GACTTGTAGG
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 14 0.88
18 2 0.12
ACGTcount: A:0.29, C:0.18, G:0.24, T:0.29
Consensus pattern (17 bp):
TTTGAAAGGATGCCACT
Found at i:28751 original size:45 final size:48
Alignment explanation
Indices: 28685--28776 Score: 136
Period size: 45 Copynumber: 2.0 Consensus size: 48
28675 ATTTATGGGC
* *
28685 TTTGAAAAGAGTGCCATTGACTTGTGGGCTTTG-AAAGAG-TGCCACT
1 TTTGAAAAGAGTGCCACTGACTTGTAGGCTTTGAAAAGAGTTGCCACT
*
28731 TTTGAAAGGA-TGCCACTGACTTGTAGGCTTTGAAAAGAGTTGCCAC
1 TTTGAAAAGAGTGCCACTGACTTGTAGGCTTTGAAAAGAGTTGCCAC
28777 CGACTCGTGG
Statistics
Matches: 41, Mismatches: 3, Indels: 3
0.87 0.06 0.06
Matches are distributed among these distances:
45 20 0.49
46 15 0.37
47 6 0.15
ACGTcount: A:0.27, C:0.16, G:0.27, T:0.29
Consensus pattern (48 bp):
TTTGAAAAGAGTGCCACTGACTTGTAGGCTTTGAAAAGAGTTGCCACT
Found at i:29210 original size:315 final size:314
Alignment explanation
Indices: 28508--29366 Score: 1260
Period size: 315 Copynumber: 2.8 Consensus size: 314
28498 CATCGACTCG
** * * * * * * * * *
28508 TGTGGGCTTTGAAAAGAGTTATCACTGGCTTGTGGGCTTTGAAAGGGTGCCACTAACTTATAGGC
1 TGTGGGCTTTGAAAAGAGTTGCCACCGACTCGTAGGCTTTGAAAGGATGACACTAATTTGTGGGC
** * * * * * * *
28573 TTCGAAAA-TGTGCCACTGACTTGTGGGCTTTGAAAGGATGCCATTGATTTTTGGGCTTT-GAAA
66 TTTAAAAAGAGTGCCATTGACTTGTGGGCTTTAAAAGGGTGCCACTGACTTGTGGGCTTTGGAAA
*
28636 G-GATGCCATTGATTTGTGGGCTTTGAAAGGGTGCCACTGATTTATGGGCTTTGAAAAGAGTGCC
131 GAG-TGCCACTGATTTGTGGGCTTTGAAAGGGTGCCACTGATTTATGGGCTTTGAAAAGAGTGCC
28700 ATTGACTTGTGGGCTTTGAAAGAGTG-C-C--AC--T----TTTGAAAGGATGCCACTGACTTGT
195 ATTGACTTGTGGGCTTTGAAAGAGTGCCACTGACTTTGGGCTTTGAAAGGATGCCACTGACTTGT
28755 AGGCTTTGAAAAGAGTTGCCACCGACTCGTGGGCTTTGAAAGGATACCACTAACT
260 AGGCTTTGAAAAGAGTTGCCACCGACTCGTGGGCTTTGAAAGGATACCACTAACT
28810 TGTGGGCTTTGAAAAGAGTTGCCACCGACTCGTAGGCTTTGAAAGGATGACACTAATTTGTGGGC
1 TGTGGGCTTTGAAAAGAGTTGCCACCGACTCGTAGGCTTTGAAAGGATGACACTAATTTGTGGGC
28875 TTTAAAAAGAGTGCCATTGACTTGTGGGCTTTAAAAGGGTGCCACTGACTTGTGGGCTTTGGAAA
66 TTTAAAAAGAGTGCCATTGACTTGTGGGCTTTAAAAGGGTGCCACTGACTTGTGGGCTTTGGAAA
* * *
28940 GAGTGCCACTAACTTGTGGGCTTTAAAAGGGTGCCACTGATTTATGGGCTTTGAAAAGAGTGCCA
131 GAGTGCCACTGATTTGTGGGCTTTGAAAGGGTGCCACTGATTTATGGGCTTTGAAAAGAGTGCCA
*
29005 TTGACTTGTGGGCTTTGAAACAGTGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTGACTTGT
196 TTGACTTGTGGGCTTTGAAAGAGTGCCACTGACTT-TGGGCTTTGAAAGGATGCCACTGACTTGT
29070 AGGCTTTGAAAAGAGTTGCCACCGACTCGTGGGCTTTGAAAGGATACCACTAACT
260 AGGCTTTGAAAAGAGTTGCCACCGACTCGTGGGCTTTGAAAGGATACCACTAACT
* *
29125 TGTGGGCTTTGAAAAGAGTTGCCATCGACTCGTAGGCTTTGAAAGGATGACACTAATTTGTGGGT
1 TGTGGGCTTTGAAAAGAGTTGCCACCGACTCGTAGGCTTTGAAAGGATGACACTAATTTGTGGGC
*
29190 TTTAAAAAGAGTGCCATTGACTTGTGGGCTTTAAAAGGGTGCCACTAACTTGTGGGCTTTGGAAA
66 TTTAAAAAGAGTGCCATTGACTTGTGGGCTTTAAAAGGGTGCCACTGACTTGTGGGCTTTGGAAA
* * * * *
29255 GAGTGCCACTGATTTGTGGGCTTTGGAAAGAGTGCCACTAACTTGTGGGCTTTG-AAAGGGTGCC
131 GAGTGCCACTGATTTGTGGGCTTT-GAAAGGGTGCCACTGATTTATGGGCTTTGAAAAGAGTGCC
* * *
29319 ACTAACTTGTGGGCTTTGAAAGGGTGCCACTGACTTATGGGCTTTGAA
195 ATTGACTTGTGGGCTTTGAAAGAGTGCCACTGACTT-TGGGCTTTGAA
29367 GAGATGAACG
Statistics
Matches: 501, Mismatches: 41, Indels: 17
0.90 0.07 0.03
Matches are distributed among these distances:
302 60 0.12
303 44 0.09
304 87 0.17
305 2 0.00
306 1 0.00
308 2 0.00
311 1 0.00
315 280 0.56
316 24 0.05
ACGTcount: A:0.24, C:0.16, G:0.29, T:0.30
Consensus pattern (314 bp):
TGTGGGCTTTGAAAAGAGTTGCCACCGACTCGTAGGCTTTGAAAGGATGACACTAATTTGTGGGC
TTTAAAAAGAGTGCCATTGACTTGTGGGCTTTAAAAGGGTGCCACTGACTTGTGGGCTTTGGAAA
GAGTGCCACTGATTTGTGGGCTTTGAAAGGGTGCCACTGATTTATGGGCTTTGAAAAGAGTGCCA
TTGACTTGTGGGCTTTGAAAGAGTGCCACTGACTTTGGGCTTTGAAAGGATGCCACTGACTTGTA
GGCTTTGAAAAGAGTTGCCACCGACTCGTGGGCTTTGAAAGGATACCACTAACT
Found at i:38553 original size:52 final size:52
Alignment explanation
Indices: 38472--38612 Score: 255
Period size: 52 Copynumber: 2.7 Consensus size: 52
38462 TGAAAAGTTA
38472 CTGCATGTATCGATACATTTAATAGTGTATCGATACATCTGGGCAAATTTGC
1 CTGCATGTATCGATACATTTAATAGTGTATCGATACATCTGGGCAAATTTGC
* *
38524 CTGCATGTATCGATACATTTTATAATGTATCGATACATCTGGGCAAATTTGC
1 CTGCATGTATCGATACATTTAATAGTGTATCGATACATCTGGGCAAATTTGC
*
38576 CTGCATGTATCGATACATTGAATAGTGTATCGATACA
1 CTGCATGTATCGATACATTTAATAGTGTATCGATACA
38613 ATGTATCGAT
Statistics
Matches: 84, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
52 84 1.00
ACGTcount: A:0.30, C:0.17, G:0.18, T:0.35
Consensus pattern (52 bp):
CTGCATGTATCGATACATTTAATAGTGTATCGATACATCTGGGCAAATTTGC
Found at i:38619 original size:13 final size:13
Alignment explanation
Indices: 38601--38625 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
38591 CATTGAATAG
38601 TGTATCGATACAA
1 TGTATCGATACAA
38614 TGTATCGATACA
1 TGTATCGATACA
38626 TGTGAGTAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:38644 original size:34 final size:33
Alignment explanation
Indices: 38580--38646 Score: 107
Period size: 34 Copynumber: 2.0 Consensus size: 33
38570 ATTTGCCTGC
*
38580 ATGTATCGATACATTGAATAGTGTATCGATACA
1 ATGTATCGATACATTGAATAATGTATCGATACA
*
38613 ATGTATCGATACATGTGAGTAATGTATCGATACA
1 ATGTATCGATACAT-TGAATAATGTATCGATACA
38647 TTTTTTTTGG
Statistics
Matches: 31, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
33 14 0.45
34 17 0.55
ACGTcount: A:0.36, C:0.12, G:0.19, T:0.33
Consensus pattern (33 bp):
ATGTATCGATACATTGAATAATGTATCGATACA
Found at i:38707 original size:33 final size:33
Alignment explanation
Indices: 38665--38734 Score: 104
Period size: 33 Copynumber: 2.1 Consensus size: 33
38655 GGCAGTAGCT
38665 TACATTGTATCGATACAAAAAAATATGTATCGA
1 TACATTGTATCGATACAAAAAAATATGTATCGA
* ***
38698 TACATTGTATCGATACAACATTTTATGTATCGA
1 TACATTGTATCGATACAAAAAAATATGTATCGA
38731 TACA
1 TACA
38735 AATCGTTGAA
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.40, C:0.14, G:0.11, T:0.34
Consensus pattern (33 bp):
TACATTGTATCGATACAAAAAAATATGTATCGA
Found at i:38708 original size:13 final size:13
Alignment explanation
Indices: 38690--38714 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
38680 CAAAAAAATA
38690 TGTATCGATACAT
1 TGTATCGATACAT
38703 TGTATCGATACA
1 TGTATCGATACA
38715 ACATTTTATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:48012 original size:20 final size:20
Alignment explanation
Indices: 47987--48063 Score: 75
Period size: 20 Copynumber: 3.9 Consensus size: 20
47977 GTAAAAAGAT
*
47987 AGAATGTATCGGTACATTGA
1 AGAATGTATCGATACATTGA
*
48007 AGAATGTATCGATACATTTA
1 AGAATGTATCGATACATTGA
** *
48027 TA-CTTGTATTGATACATTGA
1 -AGAATGTATCGATACATTGA
* *
48047 AAAATATATCGATACAT
1 AGAATGTATCGATACAT
48064 CTGGGTACTT
Statistics
Matches: 45, Mismatches: 10, Indels: 4
0.76 0.17 0.07
Matches are distributed among these distances:
19 1 0.02
20 43 0.96
21 1 0.02
ACGTcount: A:0.39, C:0.10, G:0.16, T:0.35
Consensus pattern (20 bp):
AGAATGTATCGATACATTGA
Found at i:49270 original size:20 final size:20
Alignment explanation
Indices: 49242--49292 Score: 66
Period size: 20 Copynumber: 2.5 Consensus size: 20
49232 GTAGCTTAGA
*
49242 GTATCGATACATTTAGAGAT
1 GTATTGATACATTTAGAGAT
* *
49262 GTATTGATACATTTTGATAT
1 GTATTGATACATTTAGAGAT
*
49282 ATATTGATACA
1 GTATTGATACA
49293 AATAAGGGTT
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.35, C:0.08, G:0.16, T:0.41
Consensus pattern (20 bp):
GTATTGATACATTTAGAGAT
Found at i:50415 original size:20 final size:20
Alignment explanation
Indices: 50392--50442 Score: 57
Period size: 21 Copynumber: 2.5 Consensus size: 20
50382 TCATGTACCA
* *
50392 ATACATTATTAAGTGTATTG
1 ATACATTATTAAATATATTG
* *
50412 ATACATTCTGAAAATATATTG
1 ATACATTAT-TAAATATATTG
50433 ATACATTATT
1 ATACATTATT
50443 CAAAGTATCA
Statistics
Matches: 24, Mismatches: 6, Indels: 2
0.75 0.19 0.06
Matches are distributed among these distances:
20 8 0.33
21 16 0.67
ACGTcount: A:0.39, C:0.08, G:0.10, T:0.43
Consensus pattern (20 bp):
ATACATTATTAAATATATTG
Found at i:50491 original size:54 final size:54
Alignment explanation
Indices: 50405--50513 Score: 173
Period size: 54 Copynumber: 2.0 Consensus size: 54
50395 CATTATTAAG
*
50405 TGTATTGATACATTCTGAAAATATATTGATACATTATTCAAAGTATCAATACAT
1 TGTATTGATACATTCTGAAAATATATCGATACATTATTCAAAGTATCAATACAT
* * * *
50459 TGTATTGATATATTTTGGAAATGTATCGATACATTATTCAAAGTATCAATACAT
1 TGTATTGATACATTCTGAAAATATATCGATACATTATTCAAAGTATCAATACAT
50513 T
1 T
50514 CTGGAAAAAC
Statistics
Matches: 50, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
54 50 1.00
ACGTcount: A:0.39, C:0.10, G:0.11, T:0.40
Consensus pattern (54 bp):
TGTATTGATACATTCTGAAAATATATCGATACATTATTCAAAGTATCAATACAT
Found at i:50720 original size:38 final size:36
Alignment explanation
Indices: 50645--50734 Score: 108
Period size: 38 Copynumber: 2.4 Consensus size: 36
50635 TTTAAAATCG
*
50645 TATAAATCTAAATATATACAAAAATCAATCAAATTCA
1 TATAAA-CCAAATATATACAAAAATCAATCAAATTCA
* *
50682 TATAAACCAAATATTTATCAAAAGATCGATCAAATTCA
1 TATAAACCAAATATATA-CAAAA-ATCAATCAAATTCA
*
50720 TATAAAATCAAATAT
1 TAT-AAACCAAATAT
50735 GCATTAAAAG
Statistics
Matches: 46, Mismatches: 4, Indels: 4
0.85 0.07 0.07
Matches are distributed among these distances:
36 9 0.20
37 11 0.24
38 16 0.35
39 10 0.22
ACGTcount: A:0.54, C:0.13, G:0.02, T:0.30
Consensus pattern (36 bp):
TATAAACCAAATATATACAAAAATCAATCAAATTCA
Found at i:50744 original size:39 final size:38
Alignment explanation
Indices: 50663--50745 Score: 105
Period size: 39 Copynumber: 2.2 Consensus size: 38
50653 TAAATATATA
**
50663 CAAAA-ATCAATCAAATTCATATAAACCAAATATTTAT
1 CAAAAGATCAATCAAATTCATATAAACCAAATATGCAT
* *
50700 CAAAAGATCGATCAAATTCATATAAAATCAAATATGCAT
1 CAAAAGATCAATCAAATTCATAT-AAACCAAATATGCAT
*
50739 TAAAAGA
1 CAAAAGA
50746 CCATTATAAG
Statistics
Matches: 39, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
37 5 0.13
38 16 0.41
39 18 0.46
ACGTcount: A:0.54, C:0.14, G:0.05, T:0.27
Consensus pattern (38 bp):
CAAAAGATCAATCAAATTCATATAAACCAAATATGCAT
Found at i:55248 original size:31 final size:31
Alignment explanation
Indices: 55210--55277 Score: 127
Period size: 31 Copynumber: 2.2 Consensus size: 31
55200 GTGCAAAACA
55210 ATTCGAAAGATAAAAAGATTAGGGAAGAAAT
1 ATTCGAAAGATAAAAAGATTAGGGAAGAAAT
55241 ATTCGAAAGATAAAAAGATTAGGGAAGAAAT
1 ATTCGAAAGATAAAAAGATTAGGGAAGAAAT
*
55272 GTTCGA
1 ATTCGA
55278 CACAAAGATT
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 36 1.00
ACGTcount: A:0.51, C:0.04, G:0.24, T:0.21
Consensus pattern (31 bp):
ATTCGAAAGATAAAAAGATTAGGGAAGAAAT
Found at i:55921 original size:20 final size:20
Alignment explanation
Indices: 55896--55949 Score: 83
Period size: 20 Copynumber: 2.7 Consensus size: 20
55886 GTTAGAAGCA
*
55896 ATGTATCGATACAAT-TCATC
1 ATGTATCGATACAATGT-ACC
55916 ATGTATCGATACAATGTACC
1 ATGTATCGATACAATGTACC
55936 ATGTATCGATACAA
1 ATGTATCGATACAA
55950 ACAGTGGTAA
Statistics
Matches: 32, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
20 31 0.97
21 1 0.03
ACGTcount: A:0.37, C:0.19, G:0.13, T:0.31
Consensus pattern (20 bp):
ATGTATCGATACAATGTACC
Found at i:65673 original size:16 final size:15
Alignment explanation
Indices: 65652--65693 Score: 61
Period size: 14 Copynumber: 2.9 Consensus size: 15
65642 AATAATGTTT
65652 TTATTATTTTATTTTG
1 TTATTATTTT-TTTTG
65668 TTATTA-TTTTTTTG
1 TTATTATTTTTTTTG
65682 TTA-TATTTTTTT
1 TTATTATTTTTTT
65694 AAATTTTACT
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
13 2 0.08
14 14 0.56
15 3 0.12
16 6 0.24
ACGTcount: A:0.17, C:0.00, G:0.05, T:0.79
Consensus pattern (15 bp):
TTATTATTTTTTTTG
Found at i:65688 original size:13 final size:13
Alignment explanation
Indices: 65649--65693 Score: 56
Period size: 13 Copynumber: 3.4 Consensus size: 13
65639 GAAAATAATG
*
65649 TTTTTATTAT-TT
1 TTTTTGTTATATT
65661 TATTTTGTTATTATT
1 T-TTTTGTTA-TATT
65676 TTTTTGTTATATT
1 TTTTTGTTATATT
65689 TTTTT
1 TTTTT
65694 AAATTTTACT
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
12 1 0.03
13 16 0.55
14 9 0.31
15 3 0.10
ACGTcount: A:0.16, C:0.00, G:0.04, T:0.80
Consensus pattern (13 bp):
TTTTTGTTATATT
Found at i:66530 original size:32 final size:32
Alignment explanation
Indices: 66486--66548 Score: 117
Period size: 32 Copynumber: 2.0 Consensus size: 32
66476 TATTCAATGC
*
66486 TATCGCTGTTGGAAGCTACTGTTGGTGGATGT
1 TATCGCTATTGGAAGCTACTGTTGGTGGATGT
66518 TATCGCTATTGGAAGCTACTGTTGGTGGATG
1 TATCGCTATTGGAAGCTACTGTTGGTGGATG
66549 CTGTCATTGC
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.17, C:0.13, G:0.33, T:0.37
Consensus pattern (32 bp):
TATCGCTATTGGAAGCTACTGTTGGTGGATGT
Found at i:66683 original size:31 final size:31
Alignment explanation
Indices: 66647--66738 Score: 125
Period size: 31 Copynumber: 3.0 Consensus size: 31
66637 GCTGCTTATT
66647 TGTGGAAGCTGGAAGAGGCTAGAGCTGCTGC
1 TGTGGAAGCTGGAAGAGGCTAGAGCTGCTGC
66678 TGTGGAAGCTGGAAGAGGCTCA-AGCTGCTAGC
1 TGTGGAAGCTGGAAGAGGCT-AGAGCTGCT-GC
* * *
66710 -GTGGAAACTGGAAGAAGCTCGAGCTGCTG
1 TGTGGAAGCTGGAAGAGGCTAGAGCTGCTG
66739 ATTTTGGGTG
Statistics
Matches: 55, Mismatches: 3, Indels: 7
0.85 0.05 0.11
Matches are distributed among these distances:
30 1 0.02
31 51 0.93
32 3 0.05
ACGTcount: A:0.25, C:0.17, G:0.39, T:0.18
Consensus pattern (31 bp):
TGTGGAAGCTGGAAGAGGCTAGAGCTGCTGC
Found at i:67328 original size:31 final size:31
Alignment explanation
Indices: 67281--67346 Score: 98
Period size: 31 Copynumber: 2.1 Consensus size: 31
67271 TTTTTTCCAT
*
67281 TTGCTTGTGTCCCCCATGATTGCATGC-AGCA
1 TTGCATGTGTCCCCCATGATTGCATGCTA-CA
*
67312 TTGCATGTGTCTCCCATGATTGCATGCTACA
1 TTGCATGTGTCCCCCATGATTGCATGCTACA
67343 TTGC
1 TTGC
67347 CTAGCAAGCA
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
31 31 0.97
32 1 0.03
ACGTcount: A:0.17, C:0.27, G:0.21, T:0.35
Consensus pattern (31 bp):
TTGCATGTGTCCCCCATGATTGCATGCTACA
Found at i:67726 original size:21 final size:20
Alignment explanation
Indices: 67702--67773 Score: 69
Period size: 20 Copynumber: 3.5 Consensus size: 20
67692 GGTGTCTACA
67702 GTATCGATACATTACCAGC-AT
1 GTATCGATACATT-CCA-CTAT
67723 GTATCGATACA-TCCACTTAT
1 GTATCGATACATTCCAC-TAT
*
67743 GTATCGATACATT-TACTTAT
1 GTATCGATACATTCCAC-TAT
*
67763 GTATCCATACA
1 GTATCGATACA
67774 ATTTTTTCAA
Statistics
Matches: 46, Mismatches: 2, Indels: 7
0.84 0.04 0.13
Matches are distributed among these distances:
18 1 0.02
19 3 0.07
20 30 0.65
21 12 0.26
ACGTcount: A:0.32, C:0.22, G:0.11, T:0.35
Consensus pattern (20 bp):
GTATCGATACATTCCACTAT
Found at i:67746 original size:20 final size:20
Alignment explanation
Indices: 67721--67773 Score: 79
Period size: 20 Copynumber: 2.6 Consensus size: 20
67711 CATTACCAGC
67721 ATGTATCGATACATCCACTT
1 ATGTATCGATACATCCACTT
**
67741 ATGTATCGATACATTTACTT
1 ATGTATCGATACATCCACTT
*
67761 ATGTATCCATACA
1 ATGTATCGATACA
67774 ATTTTTTCAA
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 30 1.00
ACGTcount: A:0.32, C:0.21, G:0.09, T:0.38
Consensus pattern (20 bp):
ATGTATCGATACATCCACTT
Found at i:67870 original size:20 final size:20
Alignment explanation
Indices: 67813--67861 Score: 89
Period size: 20 Copynumber: 2.5 Consensus size: 20
67803 ATAGATTCTA
67813 GTATCGATACATTCACTTAT
1 GTATCGATACATTCACTTAT
*
67833 GTATTGATACATTCACTTAT
1 GTATCGATACATTCACTTAT
67853 GTATCGATA
1 GTATCGATA
67862 TACTAACTTG
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.31, C:0.16, G:0.12, T:0.41
Consensus pattern (20 bp):
GTATCGATACATTCACTTAT
Found at i:68580 original size:28 final size:26
Alignment explanation
Indices: 68539--68606 Score: 82
Period size: 28 Copynumber: 2.5 Consensus size: 26
68529 AAAAAATAGG
* *
68539 GTTAGAGTATCCCCTCAGAGATGGTGG
1 GTTAGAGTATCCCCTCAGAAATGG-GA
*
68566 GATTAGAGTATCCCCTTAGAAATGGGA
1 G-TTAGAGTATCCCCTCAGAAATGGGA
*
68593 GTTGGAGTATCCCC
1 GTTAGAGTATCCCC
68607 GAGATGAAAA
Statistics
Matches: 36, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
26 12 0.33
27 3 0.08
28 21 0.58
ACGTcount: A:0.25, C:0.19, G:0.29, T:0.26
Consensus pattern (26 bp):
GTTAGAGTATCCCCTCAGAAATGGGA
Found at i:68705 original size:53 final size:51
Alignment explanation
Indices: 68593--68709 Score: 137
Period size: 53 Copynumber: 2.3 Consensus size: 51
68583 AGAAATGGGA
* ** *
68593 GTTGGAGTATCCCCGAGATGAAAAATTCAATGTTTTGGAAGTAAAAACAAG
1 GTTGGAGTATCCCCGAGATAAAAAATTCAACATTTTAGAAGTAAAAACAAG
* * *
68644 GTTAGAGTATCCCCAGAGATAAAAAAGTTCAACATTTTAGACA-TAAAAATAGG
1 GTTGGAGTATCCCC-GAGATAAAAAA-TTCAACATTTTAGA-AGTAAAAACAAG
68697 GTTGGAGTATCCC
1 GTTGGAGTATCCC
68710 TTCAAAGATG
Statistics
Matches: 55, Mismatches: 8, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
51 13 0.24
52 10 0.18
53 31 0.56
54 1 0.02
ACGTcount: A:0.39, C:0.14, G:0.21, T:0.26
Consensus pattern (51 bp):
GTTGGAGTATCCCCGAGATAAAAAATTCAACATTTTAGAAGTAAAAACAAG
Found at i:68791 original size:80 final size:81
Alignment explanation
Indices: 68643--68791 Score: 205
Period size: 80 Copynumber: 1.9 Consensus size: 81
68633 GTAAAAACAA
*
68643 GGTTAGAGTATCCCCAGAGATAAAAAAGTTCAACATTTTAGACATAAAAATAGGGTTGGAGTATC
1 GGTTAGAGTATCCCCAGAGATAAAAAAGTTCAACATTTTAGACATAAAAATAGGGTTGGAGTACC
68708 CCTTCAAAGATGGTGG
66 CCTTCAAAGATGGTGG
* * ***
68724 GGTTAGAGTATCCCTA-AGATGAAAAA-TTCAGTGTTTTAGA-AGTAAAAATGAGGGTTGGAGTA
1 GGTTAGAGTATCCCCAGAGATAAAAAAGTTCAACATTTTAGACA-TAAAAAT-AGGGTTGGAGTA
68786 CCCCTT
64 CCCCTT
68792 TTGATGTTTT
Statistics
Matches: 60, Mismatches: 6, Indels: 5
0.85 0.08 0.07
Matches are distributed among these distances:
78 1 0.02
79 18 0.30
80 26 0.43
81 15 0.25
ACGTcount: A:0.36, C:0.13, G:0.24, T:0.28
Consensus pattern (81 bp):
GGTTAGAGTATCCCCAGAGATAAAAAAGTTCAACATTTTAGACATAAAAATAGGGTTGGAGTACC
CCTTCAAAGATGGTGG
Found at i:71234 original size:13 final size:13
Alignment explanation
Indices: 71216--71240 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
71206 ACATTATGCT
71216 TTGTATCGATACA
1 TTGTATCGATACA
71229 TTGTATCGATAC
1 TTGTATCGATAC
71241 GTGATCATTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.28, C:0.16, G:0.16, T:0.40
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:71324 original size:13 final size:13
Alignment explanation
Indices: 71306--71336 Score: 62
Period size: 13 Copynumber: 2.4 Consensus size: 13
71296 CAATACATGG
71306 TACATTGTATCGA
1 TACATTGTATCGA
71319 TACATTGTATCGA
1 TACATTGTATCGA
71332 TACAT
1 TACAT
71337 GATGAATTGT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.32, C:0.16, G:0.13, T:0.39
Consensus pattern (13 bp):
TACATTGTATCGA
Found at i:71335 original size:33 final size:33
Alignment explanation
Indices: 71290--71357 Score: 102
Period size: 33 Copynumber: 2.1 Consensus size: 33
71280 CCTGCACTGT
*
71290 TTGTATCAATACATGGT-ACATTGTATCGATACA
1 TTGTATCAATACATGATGA-ATTGTATCGATACA
*
71323 TTGTATCGATACATGATGAATTGTATCGATACA
1 TTGTATCAATACATGATGAATTGTATCGATACA
71356 TT
1 TT
71358 ACTTCTAACG
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
33 31 0.97
34 1 0.03
ACGTcount: A:0.32, C:0.13, G:0.16, T:0.38
Consensus pattern (33 bp):
TTGTATCAATACATGATGAATTGTATCGATACA
Found at i:77518 original size:13 final size:13
Alignment explanation
Indices: 77500--77526 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
77490 ATAATATTCC
77500 TTGTATCGATACA
1 TTGTATCGATACA
77513 TTGTATCGATACA
1 TTGTATCGATACA
77526 T
1 T
77527 GGGTTACTAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.30, C:0.15, G:0.15, T:0.41
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:80044 original size:13 final size:13
Alignment explanation
Indices: 80026--80050 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
80016 ACATTATGCT
80026 TTGTATCGATACA
1 TTGTATCGATACA
80039 TTGTATCGATAC
1 TTGTATCGATAC
80051 GTGATCATTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.28, C:0.16, G:0.16, T:0.40
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:80082 original size:20 final size:20
Alignment explanation
Indices: 80037--80092 Score: 80
Period size: 20 Copynumber: 2.9 Consensus size: 20
80027 TGTATCGATA
*
80037 CATTGTATCGATACGT-GAT
1 CATTGTATCGATACATGGAT
80056 CATTGTATCGATACATGGA-
1 CATTGTATCGATACATGGAT
80075 CAATTGTATCGATACATG
1 C-ATTGTATCGATACATG
80093 AGACTGGCAG
Statistics
Matches: 34, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
19 16 0.47
20 18 0.53
ACGTcount: A:0.30, C:0.16, G:0.20, T:0.34
Consensus pattern (20 bp):
CATTGTATCGATACATGGAT
Found at i:80155 original size:13 final size:13
Alignment explanation
Indices: 80137--80189 Score: 64
Period size: 13 Copynumber: 4.5 Consensus size: 13
80127 CAATACATGG
80137 TACATTGTATCGA
1 TACATTGTATCGA
80150 TACATTGTATCGA
1 TACATTGTATCGA
80163 TACA-TG-AT-G-
1 TACATTGTATCGA
80172 -A-ATTGTATCGA
1 TACATTGTATCGA
80183 TACATTG
1 TACATTG
80190 CTTCTAACGG
Statistics
Matches: 34, Mismatches: 0, Indels: 12
0.74 0.00 0.26
Matches are distributed among these distances:
7 1 0.03
8 3 0.09
9 2 0.06
10 2 0.06
11 2 0.06
12 3 0.09
13 21 0.62
ACGTcount: A:0.32, C:0.13, G:0.17, T:0.38
Consensus pattern (13 bp):
TACATTGTATCGA
Found at i:80166 original size:33 final size:33
Alignment explanation
Indices: 80121--80189 Score: 104
Period size: 33 Copynumber: 2.1 Consensus size: 33
80111 CTACCACTGT
*
80121 TTGTATCAATACATGGT-ACATTGTATCGATACA
1 TTGTATCAATACATGATGA-ATTGTATCGATACA
*
80154 TTGTATCGATACATGATGAATTGTATCGATACA
1 TTGTATCAATACATGATGAATTGTATCGATACA
80187 TTG
1 TTG
80190 CTTCTAACGG
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
33 32 0.97
34 1 0.03
ACGTcount: A:0.32, C:0.13, G:0.17, T:0.38
Consensus pattern (33 bp):
TTGTATCAATACATGATGAATTGTATCGATACA
Found at i:81223 original size:20 final size:19
Alignment explanation
Indices: 81198--81237 Score: 62
Period size: 20 Copynumber: 2.1 Consensus size: 19
81188 AAAACTCAGA
81198 ATGTATCAATACAATAAGTG
1 ATGTATCAATAC-ATAAGTG
*
81218 ATGTATCGATACATAAGTG
1 ATGTATCAATACATAAGTG
81237 A
1 A
81238 ACATATTGAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 8 0.42
20 11 0.58
ACGTcount: A:0.42, C:0.10, G:0.17, T:0.30
Consensus pattern (19 bp):
ATGTATCAATACATAAGTG
Found at i:81248 original size:20 final size:20
Alignment explanation
Indices: 81221--81311 Score: 105
Period size: 20 Copynumber: 4.5 Consensus size: 20
81211 ATAAGTGATG
81221 TATCGATACATAAGTGAACA
1 TATCGATACATAAGTGAACA
* * *
81241 TATTGATACATTACCAG-CATC-
1 TATCGATACA-TA--AGTGAACA
81262 TATCGATACATAAGTGAACA
1 TATCGATACATAAGTGAACA
*
81282 TATCGATACATAAGTGAACG
1 TATCGATACATAAGTGAACA
81302 TATCGATACA
1 TATCGATACA
81312 AATGTTTCCA
Statistics
Matches: 59, Mismatches: 7, Indels: 10
0.78 0.09 0.13
Matches are distributed among these distances:
18 2 0.03
19 2 0.03
20 40 0.68
21 11 0.19
22 2 0.03
23 2 0.03
ACGTcount: A:0.41, C:0.18, G:0.14, T:0.27
Consensus pattern (20 bp):
TATCGATACATAAGTGAACA
Found at i:81417 original size:21 final size:19
Alignment explanation
Indices: 81371--81423 Score: 70
Period size: 20 Copynumber: 2.6 Consensus size: 19
81361 CATTGTAAGC
*
81371 ATGTATCATACATTCACTT
1 ATGTATCATACATTAACTT
81390 ATGTATCAATACATTAACTT
1 ATGTATC-ATACATTAACTT
81410 ATTGTATCGATACA
1 A-TGTATC-ATACA
81424 AATTGTAGAA
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
19 7 0.23
20 12 0.40
21 11 0.37
ACGTcount: A:0.36, C:0.17, G:0.08, T:0.40
Consensus pattern (19 bp):
ATGTATCATACATTAACTT
Found at i:88072 original size:13 final size:13
Alignment explanation
Indices: 88054--88078 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
88044 CATAAAATGT
88054 TGTATCGATACAA
1 TGTATCGATACAA
88067 TGTATCGATACA
1 TGTATCGATACA
88079 TATTTTTTTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:88160 original size:13 final size:13
Alignment explanation
Indices: 88142--88166 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
88132 ATTACTCAAA
88142 TGTATCGATACAT
1 TGTATCGATACAT
88155 TGTATCGATACA
1 TGTATCGATACA
88167 CTGATCTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:88231 original size:52 final size:52
Alignment explanation
Indices: 88175--88294 Score: 204
Period size: 52 Copynumber: 2.3 Consensus size: 52
88165 CACTGATCTT
* *
88175 TGTATCGATACATGTAGGCAAATTTGCCCAGATGTATCGATACATTATAAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
* *
88227 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATGCACTATTAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
88279 TGTATCGATACATGCA
1 TGTATCGATACATGCA
88295 AACAACTTTT
Statistics
Matches: 64, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
52 64 1.00
ACGTcount: A:0.34, C:0.17, G:0.18, T:0.30
Consensus pattern (52 bp):
TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
Found at i:91470 original size:13 final size:13
Alignment explanation
Indices: 91452--91477 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
91442 TACACAAAGT
91452 ATGTATCGATACA
1 ATGTATCGATACA
91465 ATGTATCGATACA
1 ATGTATCGATACA
91478 CAAAAAATTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:97681 original size:13 final size:13
Alignment explanation
Indices: 97663--97701 Score: 60
Period size: 13 Copynumber: 3.0 Consensus size: 13
97653 ACATTTTTCT
97663 TTGTATCGATACA
1 TTGTATCGATACA
97676 TTGTATCGATACA
1 TTGTATCGATACA
* *
97689 CTATATCGATACA
1 TTGTATCGATACA
97702 GGGTGATTAT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
13 24 1.00
ACGTcount: A:0.33, C:0.18, G:0.13, T:0.36
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:100249 original size:13 final size:13
Alignment explanation
Indices: 100231--100256 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
100221 TACACAAAGT
100231 ATGTATCGATACA
1 ATGTATCGATACA
100244 ATGTATCGATACA
1 ATGTATCGATACA
100257 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:100254 original size:32 final size:33
Alignment explanation
Indices: 100213--100276 Score: 103
Period size: 32 Copynumber: 2.0 Consensus size: 33
100203 TAGCCAAACT
**
100213 TGTATCGATACACAAAGTA-TGTATCGATACAA
1 TGTATCGATACACAAAAAATTGTATCGATACAA
100245 TGTATCGATACACAAAAAATTGTATCGATACA
1 TGTATCGATACACAAAAAATTGTATCGATACA
100277 TTGGCTTGCA
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
32 17 0.59
33 12 0.41
ACGTcount: A:0.42, C:0.16, G:0.14, T:0.28
Consensus pattern (33 bp):
TGTATCGATACACAAAAAATTGTATCGATACAA
Found at i:100341 original size:20 final size:22
Alignment explanation
Indices: 100311--100353 Score: 72
Period size: 20 Copynumber: 2.0 Consensus size: 22
100301 CTATATTTTC
100311 AAATATGTATCGATACA-TCAA
1 AAATATGTATCGATACATTCAA
100332 AAAT-TGTATCGATACATTCAA
1 AAATATGTATCGATACATTCAA
100353 A
1 A
100354 CGAGAAATCA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
20 12 0.57
21 9 0.43
ACGTcount: A:0.47, C:0.14, G:0.09, T:0.30
Consensus pattern (22 bp):
AAATATGTATCGATACATTCAA
Found at i:101211 original size:13 final size:13
Alignment explanation
Indices: 101193--101217 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
101183 TTCAACGATT
101193 TGTATCGATACAA
1 TGTATCGATACAA
101206 TGTATCGATACA
1 TGTATCGATACA
101218 TAAGTGTTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:101307 original size:13 final size:13
Alignment explanation
Indices: 101289--101313 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
101279 ATTACTCAAA
101289 TGTATCGATACAT
1 TGTATCGATACAT
101302 TGTATCGATACA
1 TGTATCGATACA
101314 CTGACCTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:101378 original size:20 final size:20
Alignment explanation
Indices: 101353--101430 Score: 68
Period size: 20 Copynumber: 3.7 Consensus size: 20
101343 ATTTGCCTAG
101353 ATGTATCGATACATTATGAA
1 ATGTATCGATACATTATGAA
* * *
101373 ATGTATACAGGTAAATT-TGCCGAG
1 ATGTAT-C-GATACATTAT---GAA
*
101397 ATGTATCGATACACTATGAA
1 ATGTATCGATACATTATGAA
101417 ATGTATCGATACAT
1 ATGTATCGATACAT
101431 GCAGGCAAAT
Statistics
Matches: 44, Mismatches: 8, Indels: 12
0.69 0.12 0.19
Matches are distributed among these distances:
20 21 0.48
21 2 0.05
22 11 0.25
23 2 0.05
24 8 0.18
ACGTcount: A:0.37, C:0.13, G:0.18, T:0.32
Consensus pattern (20 bp):
ATGTATCGATACATTATGAA
Found at i:101399 original size:44 final size:44
Alignment explanation
Indices: 101336--101422 Score: 147
Period size: 44 Copynumber: 2.0 Consensus size: 44
101326 TCGATACATG
* *
101336 CAGGCAAATTTGCCTAGATGTATCGATACATTATGAAATGTATA
1 CAGGCAAATTTGCCGAGATGTATCGATACACTATGAAATGTATA
*
101380 CAGGTAAATTTGCCGAGATGTATCGATACACTATGAAATGTAT
1 CAGGCAAATTTGCCGAGATGTATCGATACACTATGAAATGTAT
101423 CGATACATGC
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
44 40 1.00
ACGTcount: A:0.36, C:0.14, G:0.20, T:0.31
Consensus pattern (44 bp):
CAGGCAAATTTGCCGAGATGTATCGATACACTATGAAATGTATA
Found at i:109532 original size:16 final size:17
Alignment explanation
Indices: 109507--109544 Score: 51
Period size: 16 Copynumber: 2.3 Consensus size: 17
109497 TTGTGCTGTA
* *
109507 ATCATGACATC-ATGAC
1 ATCATAACATCAATAAC
109523 ATCATAACATCAATAAC
1 ATCATAACATCAATAAC
109540 ATCAT
1 ATCAT
109545 TATTTGCATC
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
16 10 0.53
17 9 0.47
ACGTcount: A:0.45, C:0.24, G:0.05, T:0.26
Consensus pattern (17 bp):
ATCATAACATCAATAAC
Found at i:109689 original size:31 final size:30
Alignment explanation
Indices: 109644--109836 Score: 264
Period size: 31 Copynumber: 6.3 Consensus size: 30
109634 TTCAAATACC
* * *
109644 TTCTTAAAGTCCACGACTTAGTGGCAATCTC
1 TTCTCAAAGTCCACGACTCAGTGGC-ATCTT
*
109675 TTCTCAAAGCCCACGACTCAGTGGCAT-TT
1 TTCTCAAAGTCCACGACTCAGTGGCATCTT
*
109704 TGTCCCAAAGTCCACGACTCAGTGGCATCTT
1 T-TCTCAAAGTCCACGACTCAGTGGCATCTT
109735 TTCTTCAAAGTCCACGACTCAGTGGCATCTT
1 TTC-TCAAAGTCCACGACTCAGTGGCATCTT
109766 TTCTTCAAAGTCCACGACTCAGTGGCATCTCT
1 TTC-TCAAAGTCCACGACTCAGTGGCATCT-T
*
109798 TTC-CAAAGTTCACGACTCAGTGGCATCTT
1 TTCTCAAAGTCCACGACTCAGTGGCATCTT
109827 TTCTTCAAAG
1 TTC-TCAAAG
109837 CCCATAACTC
Statistics
Matches: 148, Mismatches: 8, Indels: 12
0.88 0.05 0.07
Matches are distributed among these distances:
29 6 0.04
30 52 0.35
31 86 0.58
32 4 0.03
ACGTcount: A:0.24, C:0.29, G:0.17, T:0.31
Consensus pattern (30 bp):
TTCTCAAAGTCCACGACTCAGTGGCATCTT
Found at i:109744 original size:61 final size:61
Alignment explanation
Indices: 109649--109836 Score: 265
Period size: 61 Copynumber: 3.1 Consensus size: 61
109639 ATACCTTCTT
* * *
109649 AAAGTCCACGACTTAGTGGCAATCTCTTCTCAAAGCCCACGACTCAGTGGCAT-TTTGTC-CC
1 AAAGTCCACGACTCAGTGGC-ATCTTTTCTCAAAGTCCACGACTCAGTGGCATCTTT-TCTCC
*
109710 AAAGTCCACGACTCAGTGGCATCTTTTCTTCAAAGTCCACGACTCAGTGGCATCTTTTCTTC
1 AAAGTCCACGACTCAGTGGCATCTTTTC-TCAAAGTCCACGACTCAGTGGCATCTTTTCTCC
* *
109772 AAAGTCCACGACTCAGTGGCATCTCTTTC-CAAAGTTCACGACTCAGTGGCATCTTTTCTTC
1 AAAGTCCACGACTCAGTGGCATCT-TTTCTCAAAGTCCACGACTCAGTGGCATCTTTTCTCC
109833 AAAG
1 AAAG
109837 CCCATAACTC
Statistics
Matches: 118, Mismatches: 5, Indels: 8
0.90 0.04 0.06
Matches are distributed among these distances:
60 7 0.06
61 79 0.67
62 28 0.24
63 4 0.03
ACGTcount: A:0.24, C:0.29, G:0.17, T:0.29
Consensus pattern (61 bp):
AAAGTCCACGACTCAGTGGCATCTTTTCTCAAAGTCCACGACTCAGTGGCATCTTTTCTCC
Found at i:109806 original size:92 final size:92
Alignment explanation
Indices: 109644--109836 Score: 295
Period size: 92 Copynumber: 2.1 Consensus size: 92
109634 TTCAAATACC
*
109644 TTCTT-AAAGTCCACGACTTAGTGGCAATCTCTTCTCAAAGCCCACGACTCAGTGGCATTTTGTC
1 TTCTTCAAAGTCCACGACTCAGTGGCAATCTCTTCTCAAAGCCCACGACTCAGTGGCATTTTGTC
109708 CCAAAGTCCACGACTCAGTGGCATCTT
66 CCAAAGTCCACGACTCAGTGGCATCTT
* *
109735 TTCTTCAAAGTCCACGACTCAGTGGC-ATCTTTTCTTCAAAGTCCACGACTCAGTGGCATCTCTT
1 TTCTTCAAAGTCCACGACTCAGTGGCAATCTCTTC-TCAAAGCCCACGACTCAGTGGCAT-T-TT
*
109799 -T-CCAAAGTTCACGACTCAGTGGCATCTT
63 GTCCCAAAGTCCACGACTCAGTGGCATCTT
109827 TTCTTCAAAG
1 TTCTTCAAAG
109837 CCCATAACTC
Statistics
Matches: 94, Mismatches: 4, Indels: 7
0.90 0.04 0.07
Matches are distributed among these distances:
91 12 0.13
92 78 0.83
93 2 0.02
94 2 0.02
ACGTcount: A:0.24, C:0.29, G:0.17, T:0.31
Consensus pattern (92 bp):
TTCTTCAAAGTCCACGACTCAGTGGCAATCTCTTCTCAAAGCCCACGACTCAGTGGCATTTTGTC
CCAAAGTCCACGACTCAGTGGCATCTT
Found at i:109861 original size:32 final size:32
Alignment explanation
Indices: 109825--109897 Score: 92
Period size: 34 Copynumber: 2.2 Consensus size: 32
109815 CAGTGGCATC
*
109825 TTTTCTTCAAAGCCCATAACTCCGTGACACAT
1 TTTTCTTCAAAGCCCACAACTCCGTGACACAT
* * *
109857 TTTTCTTTTCAAAGCCCACCACTCCGTGGCACCT
1 TTTTC--TTCAAAGCCCACAACTCCGTGACACAT
109891 TTTTCTT
1 TTTTCTT
109898 TTCTCCAAAG
Statistics
Matches: 35, Mismatches: 4, Indels: 4
0.81 0.09 0.09
Matches are distributed among these distances:
32 7 0.20
34 28 0.80
ACGTcount: A:0.21, C:0.33, G:0.10, T:0.37
Consensus pattern (32 bp):
TTTTCTTCAAAGCCCACAACTCCGTGACACAT
Found at i:109924 original size:37 final size:37
Alignment explanation
Indices: 109823--110075 Score: 254
Period size: 37 Copynumber: 7.1 Consensus size: 37
109813 CTCAGTGGCA
* * * *
109823 TCTTTTCTTCAAAGCCCATAACTCCGTGACACATTTT
1 TCTTTTCTCCAAAGCCCATAAATCCGTGGCACCTTTT
** *
109860 TC-TTT-T-CAAAGCCCACCACTCCGTGGCACCTTTT
1 TCTTTTCTCCAAAGCCCATAAATCCGTGGCACCTTTT
* ** *
109894 TCTTTTCTCCAAAGGCCATAAATCTATGGCA-CATTT
1 TCTTTTCTCCAAAGCCCATAAATCCGTGGCACCTTTT
* ** *
109930 TCCTTT-T-CAAAGCCCACCACTCCGTGGCACCTTTT
1 TCTTTTCTCCAAAGCCCATAAATCCGTGGCACCTTTT
* *
109965 TCATTTCTCCAAAGCCCATAAATCTGTGGCACCTTTT
1 TCTTTTCTCCAAAGCCCATAAATCCGTGGCACCTTTT
*
110002 TCTTTTCTCCAAAGCCCATAAATCCGTGGCACTTTTT
1 TCTTTTCTCCAAAGCCCATAAATCCGTGGCACCTTTT
* *
110039 TCTTTT-T--AAAGCCCACAACTCCGTGGCACTCTTTT
1 TCTTTTCTCCAAAGCCCATAAATCCGTGGCAC-CTTTT
110074 TC
1 TC
110076 CCTTTTAAGT
Statistics
Matches: 179, Mismatches: 30, Indels: 16
0.80 0.13 0.07
Matches are distributed among these distances:
34 62 0.35
35 20 0.11
36 15 0.08
37 82 0.46
ACGTcount: A:0.22, C:0.32, G:0.11, T:0.36
Consensus pattern (37 bp):
TCTTTTCTCCAAAGCCCATAAATCCGTGGCACCTTTT
Found at i:109927 original size:71 final size:71
Alignment explanation
Indices: 109823--110044 Score: 300
Period size: 71 Copynumber: 3.1 Consensus size: 71
109813 CTCAGTGGCA
* * * *
109823 TCTTTTCTTCAAAGCCCATAACTCCGTGACACATTTTTCTTTTCAAAGCCCACCACTCCGTGGCA
1 TCTTTTCTCCAAAGCCCATAAATCTGTGGCACATTTTTCTTTTCAAAGCCCACCACTCCGTGGCA
109888 CCTTTT
66 CCTTTT
* * *
109894 TCTTTTCTCCAAAGGCCATAAATCTATGGCACATTTTCCTTTTCAAAGCCCACCACTCCGTGGCA
1 TCTTTTCTCCAAAGCCCATAAATCTGTGGCACATTTTTCTTTTCAAAGCCCACCACTCCGTGGCA
109959 CCTTTT
66 CCTTTT
* * ** *
109965 TCATTTCTCCAAAGCCCATAAATCTGTGGCACCTTTTTCTTTTCTCCAAAGCCCATAAATCCGTG
1 TCTTTTCTCCAAAGCCCATAAATCTGTGGCACATTTTTC-TTT-T-CAAAGCCCACCACTCCGTG
*
110030 GCACTTTTT
63 GCACCTTTT
110039 TCTTTT
1 TCTTTT
110045 TAAAGCCCAC
Statistics
Matches: 131, Mismatches: 17, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
71 98 0.75
72 3 0.02
73 1 0.01
74 29 0.22
ACGTcount: A:0.22, C:0.32, G:0.10, T:0.36
Consensus pattern (71 bp):
TCTTTTCTCCAAAGCCCATAAATCTGTGGCACATTTTTCTTTTCAAAGCCCACCACTCCGTGGCA
CCTTTT
Found at i:109999 original size:108 final size:105
Alignment explanation
Indices: 109830--110075 Score: 330
Period size: 108 Copynumber: 2.3 Consensus size: 105
109820 GCATCTTTTC
* * * * *
109830 TTCAAAGCCCATAACTCCGTGACACATTTTTCTTTTCAAAGCCCACCACTCCGTGGCACCTTTTT
1 TTCAAAGCCCACAACTCCGTGGCACCTTTTTCTTTTCAAAGCCCACAAATCCGTGGCACCTTTTT
* *
109895 CTTTTCTCCAAAGGCCATAAATCTATGGCACATTTTCCTT
66 CTTTTCTCCAAAGCCCATAAATCCATGGCACATTTTCCTT
* * *
109935 TTCAAAGCCCACCACTCCGTGGCACCTTTTTCATTTCTCCAAAGCCCATAAATCTGTGGCACCTT
1 TTCAAAGCCCACAACTCCGTGGCACCTTTTTC-TTT-T-CAAAGCCCACAAATCCGTGGCACCTT
* * *
110000 TTTCTTTTCTCCAAAGCCCATAAATCCGTGGCACTTTTTTCTT
63 TTTCTTTTCTCCAAAGCCCATAAATCCATGGCACATTTTCCTT
*
110043 TTTAAAGCCCACAACTCCGTGGCACTCTTTTTC
1 TTCAAAGCCCACAACTCCGTGGCAC-CTTTTTC
110076 CCTTTTAAGT
Statistics
Matches: 122, Mismatches: 15, Indels: 4
0.87 0.11 0.03
Matches are distributed among these distances:
105 28 0.23
106 3 0.02
107 1 0.01
108 83 0.68
109 7 0.06
ACGTcount: A:0.22, C:0.32, G:0.11, T:0.35
Consensus pattern (105 bp):
TTCAAAGCCCACAACTCCGTGGCACCTTTTTCTTTTCAAAGCCCACAAATCCGTGGCACCTTTTT
CTTTTCTCCAAAGCCCATAAATCCATGGCACATTTTCCTT
Found at i:110050 original size:71 final size:69
Alignment explanation
Indices: 109823--110075 Score: 265
Period size: 71 Copynumber: 3.5 Consensus size: 69
109813 CTCAGTGGCA
* * *
109823 TCTTTTCTTCAAAGCCCATAACTCCGTGACACATTTTTCTTTTCAAAGCCCACCACTCCGTGGCA
1 TCTTTTC-T-AAAGCCCATAAATCCGTGGCACCTTTTTCTTTTCAAAGCCCACCACTCCGTGGCA
109888 CCTTTT
64 CCTTTT
* ** * *
109894 TCTTTTCTCCAAAGGCCATAAATCTATGGCACATTTTCCTTTTCAAAGCCCACCACTCCGTGGCA
1 TCTTTTCT--AAAGCCCATAAATCCGTGGCACCTTTTTCTTTTCAAAGCCCACCACTCCGTGGCA
109959 CCTTTT
64 CCTTTT
* * ** *
109965 TCATTTCTCCAAAGCCCATAAATCTGTGGCACCTTTTTCTTTTCTCCAAAGCCCATAAATCCGTG
1 TC-TTT-TCTAAAGCCCATAAATCCGTGGCACCTTTTTC-TTT-T-CAAAGCCCACCACTCCGTG
*
110030 GCACTTTTT
61 GCACCTTTT
* *
110039 TCTTTT-TAAAGCCCACAACTCCGTGGCACTCTTTTTC
1 TCTTTTCTAAAGCCCATAAATCCGTGGCAC-CTTTTTC
110076 CCTTTTAAGT
Statistics
Matches: 156, Mismatches: 19, Indels: 13
0.83 0.10 0.07
Matches are distributed among these distances:
70 1 0.01
71 109 0.70
72 14 0.09
73 6 0.04
74 26 0.17
ACGTcount: A:0.22, C:0.32, G:0.11, T:0.36
Consensus pattern (69 bp):
TCTTTTCTAAAGCCCATAAATCCGTGGCACCTTTTTCTTTTCAAAGCCCACCACTCCGTGGCACC
TTTT
Found at i:110094 original size:35 final size:35
Alignment explanation
Indices: 109833--110124 Score: 190
Period size: 37 Copynumber: 8.2 Consensus size: 35
109823 TCTTTTCTTC
* *
109833 AAAGCCCATAACTCCGTGACAC-ATTTTT-CTTTT
1 AAAGCCCATAACTCCGTGGCACTCTTTTTCCTTTT
** *
109866 CAAAGCCCACCACTCCGTGGCAC-CTTTTTCTTTTCT
1 -AAAGCCCATAACTCCGTGGCACTCTTTTTCCTTT-T
* * ** *
109902 CCAAAGGCCATAAATCTATGGCA--CATTTTCCTTTT
1 --AAAGCCCATAACTCCGTGGCACTCTTTTTCCTTTT
** *
109937 CAAAGCCCACCACTCCGTGGCAC-CTTTTTCATTTCT
1 -AAAGCCCATAACTCCGTGGCACTCTTTTTCCTTT-T
* * *
109973 CCAAAGCCCATAAATCTGTGGCAC-CTTTTTCTTTTCT
1 --AAAGCCCATAACTCCGTGGCACTCTTTTTCCTTT-T
* *
110010 CCAAAGCCCATAAATCCGTGGCACT-TTTTTCTTTTT
1 --AAAGCCCATAACTCCGTGGCACTCTTTTTCCTTTT
*
110046 AAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTTT
1 AAAGCCCATAACTCCGTGGCACTCTTTTT-CCTTTT
** *
110082 -AAGTTCATAACTCCGTGGCA-TCTTTCTCCTTTT
1 AAAGCCCATAACTCCGTGGCACTCTTTTTCCTTTT
110115 CAAAAGCCCA
1 --AAAGCCCA
110125 CAAGTCAGTG
Statistics
Matches: 210, Mismatches: 36, Indels: 22
0.78 0.13 0.08
Matches are distributed among these distances:
33 6 0.03
34 67 0.32
35 35 0.17
36 22 0.10
37 80 0.38
ACGTcount: A:0.23, C:0.32, G:0.11, T:0.35
Consensus pattern (35 bp):
AAAGCCCATAACTCCGTGGCACTCTTTTTCCTTTT
Found at i:110337 original size:92 final size:92
Alignment explanation
Indices: 110222--112173 Score: 1326
Period size: 92 Copynumber: 21.0 Consensus size: 92
110212 GCACCTTTGT
* *
110222 CTTTAAGCCCAATATCGCTGGCCTTAAATCAGCATATTGGCACCTTTGTCTTTAAGACCAATGTT
1 CTTTAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTGTCTTTAAGACCAATGTC
* * *
110287 GCTGACCTTGAATCACCACATTGACAC
66 GCTGGCCTTGAATCAGCACATTGGCAC
* *
110314 CTTTAAGCCTAATATCGCTGGCCTTGAATCAGCATATTGGCACATTTGTCTTTAAGACCAATGTC
1 CTTTAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTGTCTTTAAGACCAATGTC
110379 GCTGGCCTTGAATCAGCACATTGGCAC
66 GCTGGCCTTGAATCAGCACATTGGCAC
* *
110406 CTTTAAGCCTAATATCGCTGGCCTTGAATTAGCATATTGGCACCTTTGTCTTTAAGACCAATGTC
1 CTTTAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTGTCTTTAAGACCAATGTC
110471 GCTGGCCTTGAATCAGCACATTGGCAC
66 GCTGGCCTTGAATCAGCACATTGGCAC
*
110498 CTTTAAGCCTAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTGTCTTTAAGACCAATGTC
1 CTTTAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTGTCTTTAAGACCAATGTC
*
110563 GCGGGCCTTGAATCAGCACATTGGCAC
66 GCTGGCCTTGAATCAGCACATTGGCAC
* *
110590 CTTTAAGCCCAATATCGCTGGCCTTAAATCAGCATATTGGCACCTTTGTCTTTACGACCAATGTC
1 CTTTAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTGTCTTTAAGACCAATGTC
* *
110655 GCTGACCTTGAATTAGCACATTGGCAC
66 GCTGGCCTTGAATCAGCACATTGGCAC
* *
110682 CTTTAAGCCCAATATCCCTGGCCTTGAATCACCATATTGGCACCTTTGTCTTTAAGACCAATGTC
1 CTTTAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTGTCTTTAAGACCAATGTC
110747 GCTGGCCTTGAATCAGCACATTGGCAC
66 GCTGGCCTTGAATCAGCACATTGGCAC
* * *
110774 CTTGAAGCCCAATATCGTTGGCCTTGAATCAGCATATTGGCACTTTTGTCTTTAAGACCAATGTC
1 CTTTAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTGTCTTTAAGACCAATGTC
* *
110839 GTTGGCCTTGAATCAACACATTGGCACCTTC
66 GCTGGCCTTGAATCAGCACATTGGCA----C
* * * ** *
110870 ATCTTTAAGTCCAATATCGCTAGCCTTGAATCAGTATATTGGCGGCTTTGTCATCTTTAAGTCCA
1 --CTTTAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTG---TCTTTAAGACCA
* * *
110935 ATATAGCTGGCCTTGAATCAGCATATTGGCACC
61 ATGTCGCTGGCCTTGAATCAGCACATTGGCA-C
* * * * *
110968 TTTATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA-C-----CTTTAAGTCCA
1 -----CTTTAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTGTCTTTAAGACCA
* * *
111027 ATATAGCTGGCCTTGAATCAGCATATTGGCACCTC
61 ATGTCGCTGGCCTTGAATCAGCACATTGGCA---C
* * * * * * *
111062 ATCTTTAAGTCCAATGTAGCTGGCCTTG-ATACAACACATTGGCA-C-----CTTTAAGTCTAAT
1 --CTTTAAGCCCAATATCGCTGGCCTTGAAT-CAGCATATTGGCACCTTTGTCTTTAAGACCAAT
* * * *
111120 ATAGCTAGCCTTGAATCAGCATATTGGCACC
63 GTCGCTGGCCTTGAATCAGCACATTGGCA-C
** * * *
111151 TTTGACTTTAAAACCAATGTCGCTGGCCTTGAATCAGCACATTGGCA-C-----CTTTAAGCCCA
1 -----CTTTAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTGTCTTTAAGACCA
* * * *
111210 ATATCGCTGGCCTTAAATCAACATATTGGCACCC
61 ATGTCGCTGGCCTTGAATCAGCACATTGGCA--C
* * * *
111244 TTGTCTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCA-C-----CTTTAAGCCCAA
1 ----CTTTAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTGTCTTTAAGACCAA
* * * *
111303 TATCGCTGCCCTTGAATCAGCATACTGGCACC
62 TGTCGCTGGCCTTGAATCAGCACATTGGCA-C
* * *
111335 TTTTTCTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCA-C-----CTTTAA-ACCC
1 -----CTTTAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTGTCTTTAAGA-CC
* *
111393 AATATCGCTGGCCTTGAATCAGCATATTGGCACC
60 AATGTCGCTGGCCTTGAATCAGCACATTGGCA-C
* * *
111427 TTTGTCTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCA-C-----CTTTAAG-CCT
1 -----CTTTAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTGTCTTTAAGACC-
* * *
111485 AATATCGCTGGCCTTGAATTAGCATATTGGCAC
60 AATGTCGCTGGCCTTGAATCAGCACATTGGCAC
* *
111518 ATTTGTCTTTAAGACCAATGTCGCTGGCCTTGAATCAGCATATTGGCA-C-----CTTTAAG-CC
1 ------CTTTAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTGTCTTTAAGACC
* *
111576 TAATATCGCTGGCCTTGAATCAGCATATTGGCACC
60 -AATGTCGCTGGCCTTGAATCAGCACATTGGCA-C
* * * * * *
111611 TTTGTCTTTAAGACCAATGTCGTTGGCCTTGAATTAGCACATTGGCA-C-----CTTTAAGCCCA
1 -----CTTTAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTGTCTTTAAGACCA
* * * *
111670 ATATCACTGGCCTTGAATTAGCATATTGGCACC
61 ATGTCGCTGGCCTTGAATCAGCACATTGGCA-C
* * * * *
111703 TTTGTCTTTAAGACCAATGTCGCTGGCCTTGAATCAACACATTGGCA-C-----CTTTAAGCCCA
1 -----CTTTAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTGTCTTTAAGACCA
* * * *
111762 ATATCGTTGGCCTTGAATCAACATATTGGCACC
61 ATGTCGCTGGCCTTGAATCAGCACATTGGCA-C
* * * * *
111795 TTTGTCTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATCGGCACC-TT-TC----AGCCCA
1 -----CTTTAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTGTCTTTAAGACCA
* ** *
111854 ATATCATTGGCCTTGAATCAGCATATTGGCACC
61 ATGTCGCTGGCCTTGAATCAGCACATTGGCA-C
* * * * * *
111887 TTTGTCTTTAAGACTAATGTTGCTGGCCTTGAATCAGCACATTGGCA-C-----CTTTAAGCCCA
1 -----CTTTAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTGTCTTTAAGACCA
* *
111946 ATATCGCTGGCCTTGAATCAGCATATTGGCACC
61 ATGTCGCTGGCCTTGAATCAGCACATTGGCA-C
* * * * ** *
111979 TTTGTCTTTAAGTCCAATGTCGCTGGCCTTAAATCAGCACATTGGCACCTTCATCTTTAAGTCCA
1 -----CTTTAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTGTCTTTAAGACCA
* * *
112044 ATATCGCTGGCCTTGAATCAGCATATTGGAGCCTTTGTC
61 ATGTCGCTGGCCTTGAATCAGCACATT-G-G-C----AC
* * * * * ** * * *
112083 GTCTTTAAGTCCAATGTTGCTGGCCTTGAATCAGCACATTGGAACCTTCATCTTTATGTCCAATA
1 --CTTTAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTGTCTTTAAGACCAATG
*
112148 TCGCTGGCCTTGAATCAGCATATTGG
64 TCGCTGGCCTTGAATCAGCACATTGG
112174 TGCCTTCGTC
Statistics
Matches: 1699, Mismatches: 113, Indels: 89
0.89 0.06 0.05
Matches are distributed among these distances:
88 1 0.00
89 1 0.00
90 2 0.00
91 87 0.05
92 1351 0.80
93 9 0.01
94 1 0.00
96 2 0.00
98 78 0.05
99 2 0.00
100 3 0.00
101 161 0.09
104 1 0.00
ACGTcount: A:0.25, C:0.26, G:0.18, T:0.31
Consensus pattern (92 bp):
CTTTAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTGTCTTTAAGACCAATGTC
GCTGGCCTTGAATCAGCACATTGGCAC
Found at i:110514 original size:184 final size:175
Alignment explanation
Indices: 110174--112229 Score: 1675
Period size: 184 Copynumber: 11.0 Consensus size: 175
110164 GGCATATTCT
* * * *
110174 TTTAAGCCCAATATCGCTAGCCTTAAATCAGCATATTGGCACCTTTGTCTTTAAGCCCAATATCG
1 TTTAAGACCAATATCGCTGGCCTTGAATCAGCATATTGGCACC----TCTTTAAG-CCAATGTCG
* * * * * *
110239 CTGGCCTTAAATCAGCATATTGGCACCTTTGTCTTTAAGACCAATGTTGCTGACCTTGAATCACC
61 CTGGCCTTGAATCAGCACATTGGCA-C-----CTTTAAGACCAATATCGCTGGCCTTGAATCAGC
* * * *
110304 ACATTGACA-C-CTTTAAG-CCTAATATCGCTGGCCTTGAATCAGCATATTGGCACATTTGTC
120 ATATTGGCACCTCTTTAAGACC-AATGTCGCTGGCCTTGAATCAGCACATTGGCAC------C
* * *
110364 TTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCA-C-CTTTAAGCCTAATATCGCTGG
1 TTTAAGACCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTCTTTAAGCC-AATGTCGCTGG
* * * *
110427 CCTTGAATTAGCATATTGGCACCTTTGTCTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACAT
65 CCTTGAATCAGCACATTGGCA-C-----CTTTAAGACCAATATCGCTGGCCTTGAATCAGCATAT
* *
110492 TGGCA-C-CTTTAAG-CCTAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTGTC
124 TGGCACCTCTTTAAGACC-AATGTCGCTGGCCTTGAATCAGCACATTGGCA-C-----C
* * * *
110548 TTTAAGACCAATGTCGCGGGCCTTGAATCAGCACATTGGCA-C-CTTTAAGCCCAATATCGCTGG
1 TTTAAGACCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTCTTTAAG-CCAATGTCGCTGG
* * * * * * *
110611 CCTTAAATCAGCATATTGGCACCTTTGTCTTTACGACCAATGTCGCTGACCTTGAATTAGCACAT
65 CCTTGAATCAGCACATTGGCA-C-----CTTTAAGACCAATATCGCTGGCCTTGAATCAGCATAT
* * * * *
110676 TGGCA-C-CTTTAAGCCCAATATCCCTGGCCTTGAATCACCATATTGGCACCTTTGTC
124 TGGCACCTCTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCA-C-----C
* * * * *
110732 TTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCA-C-CTTGAAGCCCAATATCGTTGG
1 TTTAAGACCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTCTTTAAG-CCAATGTCGCTGG
* * * * *
110795 CCTTGAATCAGCATATTGGCACTTTTGTCTTTAAGACCAATGTCGTTGGCCTTGAATCAACACAT
65 CCTTGAATCAGCACATTGGCAC------CTTTAAGACCAATATCGCTGGCCTTGAATCAGCATAT
* * * * * *
110860 TGGCACCTTCATCTTTAAGTCCAATATCGCTAGCCTTGAATCAGTATATTGGCGGCTTTGTCATC
124 TGGCA-C--C-TCTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATT----G----G-CACC
* * *
110925 TTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGTCCAATGTAG
1 TTTAAGACCAATATCGCTGGCCTTGAATCAGCATATTGGCACC----TCTTTAAG-CCAATGTCG
* *
110990 CTGGCCTTGAATCAGCACATTGGCACCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTG
61 CTGGCCTTGAATCAGCACATTGGCACCTTTAAGACCAATATCGCTGGCCTTGAATCAGCATATTG
* * *
111055 GCACCTCATCTTTAAGTCCAATGTAGCTGGCCTTG-ATACAACACATTGGCACC
126 GCA-C-C-TCTTTAAGACCAATGTCGCTGGCCTTGAAT-CAGCACATTGGCACC
* * * * *
111108 TTTAAGTCTAATATAGCTAGCCTTGAATCAGCATATTGGCACCTTTGACTTTAAAACCAATGTCG
1 TTTAAGACCAATATCGCTGGCCTTGAATCAGCATATTGGCACC--T--CTTT-AAGCCAATGTCG
* * *
111173 CTGGCCTTGAATCAGCACATTGGCACCTTTAAGCCCAATATCGCTGGCCTTAAATCAACATATTG
61 CTGGCCTTGAATCAGCACATTGGCACCTTTAAGACCAATATCGCTGGCCTTGAATCAGCATATTG
111238 GCACCCTTGTCTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCACC
126 GCA-CC---TCTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCACC
* * *
111292 TTTAAGCCCAATATCGCTGCCCTTGAATCAGCATACTGGCACCTTTTTCTTTAAGACCAATGTCG
1 TTTAAGACCAATATCGCTGGCCTTGAATCAGCATATTGGCACC----TCTTTAAG-CCAATGTCG
111357 CTGGCCTTGAATCAGCACATTGGCACCTTTAA-ACCCAATATCGCTGGCCTTGAATCAGCATATT
61 CTGGCCTTGAATCAGCACATTGGCACCTTTAAGA-CCAATATCGCTGGCCTTGAATCAGCATATT
111421 GGCACCTTTGTCTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCACC
125 GGCACC----TCTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCACC
* *
111476 TTTAAG-CCTAATATCGCTGGCCTTGAATTAGCATATTGGCACATTTGTCTTTAAGACCAATGTC
1 TTTAAGACC-AATATCGCTGGCCTTGAATCAGCATATTGGCAC----CTCTTTAAG-CCAATGTC
*
111540 GCTGGCCTTGAATCAGCATATTGGCACCTTTAAG-CCTAATATCGCTGGCCTTGAATCAGCATAT
60 GCTGGCCTTGAATCAGCACATTGGCACCTTTAAGACC-AATATCGCTGGCCTTGAATCAGCATAT
* *
111604 TGGCACCTTTGTCTTTAAGACCAATGTCGTTGGCCTTGAATTAGCACATTGGCACC
124 TGGCACC----TCTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCACC
* * *
111660 TTTAAGCCCAATATCACTGGCCTTGAATTAGCATATTGGCACCTTTGTCTTTAAGACCAATGTCG
1 TTTAAGACCAATATCGCTGGCCTTGAATCAGCATATTGGCACC----TCTTTAAG-CCAATGTCG
* * * *
111725 CTGGCCTTGAATCAACACATTGGCACCTTTAAGCCCAATATCGTTGGCCTTGAATCAACATATTG
61 CTGGCCTTGAATCAGCACATTGGCACCTTTAAGACCAATATCGCTGGCCTTGAATCAGCATATTG
*
111790 GCACCTTTGTCTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATCGGCACC
126 GCACC----TCTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCACC
* * ** * *
111844 TTTCAGCCCAATATCATTGGCCTTGAATCAGCATATTGGCACCTTTGTCTTTAAGACTAATGTTG
1 TTTAAGACCAATATCGCTGGCCTTGAATCAGCATATTGGCACC----TCTTTAAG-CCAATGTCG
*
111909 CTGGCCTTGAATCAGCACATTGGCACCTTTAAGCCCAATATCGCTGGCCTTGAATCAGCATATTG
61 CTGGCCTTGAATCAGCACATTGGCACCTTTAAGACCAATATCGCTGGCCTTGAATCAGCATATTG
* *
111974 GCACCTTTGTCTTTAAGTCCAATGTCGCTGGCCTTAAATCAGCACATTGGCACCTTCATC
126 GCACC----TCTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCA----C--C
*
112034 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGG-AGCCTTTGTCGTCTTTAAGTCCAAT
1 TTTAAGACCAATATCGCTGGCCTTGAATCAGCATATTGGCA--C-----C-TCTTTAAG-CCAAT
* * * *
112098 GTTGCTGGCCTTGAATCAGCACATTGGAACCTTCATCTTTATGTCCAATATCGCTGGCCTTGAAT
57 GTCGCTGGCCTTGAATCAGCACATTGG------CACCTTTAAGACCAATATCGCTGGCCTTGAAT
* * * *
112163 CAGCATATTGGTGCCTTCGTCATCTTTAAAACCCAATGTCGTTGGCCTTGAATCAACACATTGGC
116 CAGCATATT-G-G-C-AC--C-TCTTTAAGA-CCAATGTCGCTGGCCTTGAATCAGCACATTGGC
112228 AC
173 AC
112230 TCTTCTTTAA
Statistics
Matches: 1666, Mismatches: 123, Indels: 145
0.86 0.06 0.07
Matches are distributed among these distances:
181 2 0.00
182 1 0.00
183 133 0.08
184 1129 0.68
185 11 0.01
186 3 0.00
188 3 0.00
189 2 0.00
190 105 0.06
191 3 0.00
192 33 0.02
193 116 0.07
194 2 0.00
196 1 0.00
198 1 0.00
199 78 0.05
200 1 0.00
201 1 0.00
202 8 0.00
203 32 0.02
205 1 0.00
ACGTcount: A:0.25, C:0.26, G:0.18, T:0.31
Consensus pattern (175 bp):
TTTAAGACCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTCTTTAAGCCAATGTCGCTGGC
CTTGAATCAGCACATTGGCACCTTTAAGACCAATATCGCTGGCCTTGAATCAGCATATTGGCACC
TCTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCACC
Found at i:111569 original size:21 final size:21
Alignment explanation
Indices: 111545--111612 Score: 50
Period size: 21 Copynumber: 3.2 Consensus size: 21
111535 ATGTCGCTGG
111545 CCTTGAATCAGCATATTGGCA
1 CCTTGAATCAGCATATTGGCA
* * ***
111566 CCTTTAAGCCTAATATCGCTGGC-
1 CCTTGAATCAGCATAT---TGGCA
111589 -CTTGAATCAGCATATTGGCA
1 CCTTGAATCAGCATATTGGCA
111609 CCTT
1 CCTT
111613 TGTCTTTAAG
Statistics
Matches: 32, Mismatches: 10, Indels: 10
0.62 0.19 0.19
Matches are distributed among these distances:
19 4 0.12
21 14 0.44
22 10 0.31
24 4 0.12
ACGTcount: A:0.25, C:0.26, G:0.18, T:0.31
Consensus pattern (21 bp):
CCTTGAATCAGCATATTGGCA
Found at i:111753 original size:21 final size:21
Alignment explanation
Indices: 111729--111796 Score: 50
Period size: 21 Copynumber: 3.2 Consensus size: 21
111719 ATGTCGCTGG
111729 CCTTGAATCAACACATTGGCA
1 CCTTGAATCAACACATTGGCA
* * * *
111750 CCTTTAAGCCCAATATCGTTGG--
1 CCTTGAA--TCAACA-CATTGGCA
*
111772 CCTTGAATCAACATATTGGCA
1 CCTTGAATCAACACATTGGCA
111793 CCTT
1 CCTT
111797 TGTCTTTAAG
Statistics
Matches: 33, Mismatches: 9, Indels: 10
0.63 0.17 0.19
Matches are distributed among these distances:
19 4 0.12
20 4 0.12
21 10 0.30
22 6 0.18
23 4 0.12
24 5 0.15
ACGTcount: A:0.28, C:0.28, G:0.15, T:0.29
Consensus pattern (21 bp):
CCTTGAATCAACACATTGGCA
Found at i:112313 original size:47 final size:47
Alignment explanation
Indices: 112219--112319 Score: 121
Period size: 47 Copynumber: 2.1 Consensus size: 47
112209 CTTGAATCAA
* * * * * *
112219 CACATTGGCACTCTTCTTTAAGTCAAATGTCGCTGGCTGTGACTTAG
1 CACATTGGCACTCTTCTTCAAGTCAAATGACGCTGACCGTAAATTAG
* * *
112266 CATATTGGCATTCTTCTTCAAGTCTAATGACGCTGACCGTAAATTAG
1 CACATTGGCACTCTTCTTCAAGTCAAATGACGCTGACCGTAAATTAG
112313 CACATTG
1 CACATTG
112320 ACATCCTTTT
Statistics
Matches: 44, Mismatches: 10, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
47 44 1.00
ACGTcount: A:0.25, C:0.23, G:0.19, T:0.34
Consensus pattern (47 bp):
CACATTGGCACTCTTCTTCAAGTCAAATGACGCTGACCGTAAATTAG
Found at i:113044 original size:13 final size:13
Alignment explanation
Indices: 113026--113050 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
113016 TTCAACGATT
113026 TGTATCGATACAA
1 TGTATCGATACAA
113039 TGTATCGATACA
1 TGTATCGATACA
113051 TAAGTGTTAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:113140 original size:13 final size:13
Alignment explanation
Indices: 113122--113146 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
113112 ATTACTCAAA
113122 TGTATCGATACAT
1 TGTATCGATACAT
113135 TGTATCGATACA
1 TGTATCGATACA
113147 CTGATCTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:113211 original size:52 final size:52
Alignment explanation
Indices: 113155--113283 Score: 204
Period size: 52 Copynumber: 2.5 Consensus size: 52
113145 CACTGATCTT
*
113155 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACATTATGAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATGAAA
** * *
113207 TGTATCGATACATATAGGCAAATTTGCCGAGATGTATCGATGCACTATGAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATGAAA
*
113259 TGTATCGATACTTGCAGGCAAATTT
1 TGTATCGATACATGCAGGCAAATTT
113284 TCATATTTCA
Statistics
Matches: 69, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
52 69 1.00
ACGTcount: A:0.33, C:0.16, G:0.20, T:0.30
Consensus pattern (52 bp):
TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATGAAA
Found at i:118736 original size:10 final size:10
Alignment explanation
Indices: 118721--118758 Score: 51
Period size: 10 Copynumber: 3.7 Consensus size: 10
118711 GAGAATTTCA
118721 TGAAAAATTT
1 TGAAAAATTT
118731 TGAAAAAATGTT
1 TG-AAAAAT-TT
118743 TG-AAAATTT
1 TGAAAAATTT
118752 TGAAAAA
1 TGAAAAA
118759 ATCATATAGT
Statistics
Matches: 25, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
9 4 0.16
10 11 0.44
11 6 0.24
12 4 0.16
ACGTcount: A:0.53, C:0.00, G:0.13, T:0.34
Consensus pattern (10 bp):
TGAAAAATTT
Found at i:118739 original size:11 final size:11
Alignment explanation
Indices: 118723--118760 Score: 53
Period size: 11 Copynumber: 3.5 Consensus size: 11
118713 GAATTTCATG
118723 AAAAATTTTGA
1 AAAAATTTTGA
118734 AAAAATGTTTG-
1 AAAAAT-TTTGA
118745 -AAAATTTTGA
1 AAAAATTTTGA
118755 AAAAAT
1 AAAAAT
118761 CATATAGTGG
Statistics
Matches: 24, Mismatches: 0, Indels: 6
0.80 0.00 0.20
Matches are distributed among these distances:
9 4 0.17
10 5 0.21
11 11 0.46
12 4 0.17
ACGTcount: A:0.55, C:0.00, G:0.11, T:0.34
Consensus pattern (11 bp):
AAAAATTTTGA
Found at i:120908 original size:51 final size:52
Alignment explanation
Indices: 120785--120923 Score: 199
Period size: 51 Copynumber: 2.7 Consensus size: 52
120775 ATTTAACTAG
* * *
120785 ATGTATCGATACACTGAAGAATGTATCAATACATTTAGGTCAAAAACCAAGA
1 ATGTATCGATACAATGAAAAATGTATCGATACATTTAGGTCAAAAACCAAGA
* * *
120837 ATGTATCGATGCAATGAAAAATGTATCGATACATTTGGGTC-AAAACCCAGA
1 ATGTATCGATACAATGAAAAATGTATCGATACATTTAGGTCAAAAACCAAGA
* *
120888 TTGTATCGATACAATAAAAAATGTATCGATACATTT
1 ATGTATCGATACAATGAAAAATGTATCGATACATTT
120924 TCATTCTAGA
Statistics
Matches: 78, Mismatches: 9, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
51 42 0.54
52 36 0.46
ACGTcount: A:0.42, C:0.14, G:0.16, T:0.28
Consensus pattern (52 bp):
ATGTATCGATACAATGAAAAATGTATCGATACATTTAGGTCAAAAACCAAGA
Found at i:123173 original size:20 final size:20
Alignment explanation
Indices: 123148--123213 Score: 83
Period size: 20 Copynumber: 3.6 Consensus size: 20
123138 TACCACTATT
123148 TGTATCGATACATGCTACAA
1 TGTATCGATACATGCTACAA
123168 TGTATCGATACA---T----
1 TGTATCGATACATGCTACAA
123181 TGTATCGATACATGCTACAA
1 TGTATCGATACATGCTACAA
123201 TGTATCGATACAT
1 TGTATCGATACAT
123214 TGTATCGATA
Statistics
Matches: 39, Mismatches: 0, Indels: 14
0.74 0.00 0.26
Matches are distributed among these distances:
13 12 0.31
16 1 0.03
17 1 0.03
20 25 0.64
ACGTcount: A:0.33, C:0.18, G:0.15, T:0.33
Consensus pattern (20 bp):
TGTATCGATACATGCTACAA
Found at i:123184 original size:13 final size:13
Alignment explanation
Indices: 123163--123226 Score: 68
Period size: 13 Copynumber: 5.4 Consensus size: 13
123153 CGATACATGC
*
123163 TACAATGTATCGA
1 TACATTGTATCGA
123176 TACATTGTATCGA
1 TACATTGTATCGA
123189 TACA-TG---C--
1 TACATTGTATCGA
*
123196 TACAATGTATCGA
1 TACATTGTATCGA
123209 TACATTGTATCGA
1 TACATTGTATCGA
123222 TACAT
1 TACAT
123227 GATGAATTTT
Statistics
Matches: 43, Mismatches: 2, Indels: 12
0.75 0.04 0.21
Matches are distributed among these distances:
7 4 0.09
8 2 0.05
9 1 0.02
11 1 0.02
12 2 0.05
13 33 0.77
ACGTcount: A:0.34, C:0.17, G:0.14, T:0.34
Consensus pattern (13 bp):
TACATTGTATCGA
Found at i:123248 original size:33 final size:33
Alignment explanation
Indices: 123147--123227 Score: 162
Period size: 33 Copynumber: 2.5 Consensus size: 33
123137 CTACCACTAT
123147 TTGTATCGATACATGCTACAATGTATCGATACA
1 TTGTATCGATACATGCTACAATGTATCGATACA
123180 TTGTATCGATACATGCTACAATGTATCGATACA
1 TTGTATCGATACATGCTACAATGTATCGATACA
123213 TTGTATCGATACATG
1 TTGTATCGATACATG
123228 ATGAATTTTA
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 48 1.00
ACGTcount: A:0.32, C:0.17, G:0.16, T:0.35
Consensus pattern (33 bp):
TTGTATCGATACATGCTACAATGTATCGATACA
Found at i:127230 original size:22 final size:22
Alignment explanation
Indices: 127202--127247 Score: 83
Period size: 22 Copynumber: 2.1 Consensus size: 22
127192 CCTCCGAAAG
*
127202 GAAGGTATCTTTTGTTGACAAT
1 GAAGGTATCTTTTATTGACAAT
127224 GAAGGTATCTTTTATTGACAAT
1 GAAGGTATCTTTTATTGACAAT
127246 GA
1 GA
127248 TGTAGAGATT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.30, C:0.09, G:0.22, T:0.39
Consensus pattern (22 bp):
GAAGGTATCTTTTATTGACAAT
Found at i:130777 original size:21 final size:21
Alignment explanation
Indices: 130738--130814 Score: 109
Period size: 22 Copynumber: 3.6 Consensus size: 21
130728 AGATTTGACA
*
130738 AAGGGGGAGAAATGCTTTGATT
1 AAGGGGGAGAAAT-TTTTGATT
130760 AAGGGGGAGAAATTTTTGATT
1 AAGGGGGAGAAATTTTTGATT
* *
130781 AAAGGGGAGAAATTCTTTAATT
1 AAGGGGGAGAAATT-TTTGATT
130803 AAGGGGGAGAAA
1 AAGGGGGAGAAA
130815 AAAGAAAACT
Statistics
Matches: 50, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
21 20 0.40
22 30 0.60
ACGTcount: A:0.38, C:0.03, G:0.34, T:0.26
Consensus pattern (21 bp):
AAGGGGGAGAAATTTTTGATT
Found at i:131455 original size:13 final size:13
Alignment explanation
Indices: 131434--131486 Score: 55
Period size: 13 Copynumber: 4.5 Consensus size: 13
131424 CGATAGATGC
*
131434 TACAATGTATCGA
1 TACATTGTATCGA
131447 TACATTGTATCGA
1 TACATTGTATCGA
131460 TACA-TG-AT-G-
1 TACATTGTATCGA
131469 -A-ATTGTATCGA
1 TACATTGTATCGA
131480 TACATTG
1 TACATTG
131487 CTTGTAACGG
Statistics
Matches: 33, Mismatches: 1, Indels: 12
0.72 0.02 0.26
Matches are distributed among these distances:
7 1 0.03
8 3 0.09
9 2 0.06
10 2 0.06
11 2 0.06
12 3 0.09
13 20 0.61
ACGTcount: A:0.34, C:0.13, G:0.17, T:0.36
Consensus pattern (13 bp):
TACATTGTATCGA
Found at i:131455 original size:33 final size:33
Alignment explanation
Indices: 131418--131486 Score: 95
Period size: 33 Copynumber: 2.1 Consensus size: 33
131408 CTACCACTGT
* *
131418 TTGTATCGATAGATGCT-ACAATGTATCGATACA
1 TTGTATCGATACATGATGA-AATGTATCGATACA
*
131451 TTGTATCGATACATGATGAATTGTATCGATACA
1 TTGTATCGATACATGATGAAATGTATCGATACA
131484 TTG
1 TTG
131487 CTTGTAACGG
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
33 31 0.97
34 1 0.03
ACGTcount: A:0.32, C:0.13, G:0.19, T:0.36
Consensus pattern (33 bp):
TTGTATCGATACATGATGAAATGTATCGATACA
Found at i:132552 original size:24 final size:24
Alignment explanation
Indices: 132525--132570 Score: 92
Period size: 24 Copynumber: 1.9 Consensus size: 24
132515 CCGAGAAAGA
132525 GAACATTTTTAACCATTTTCTTGT
1 GAACATTTTTAACCATTTTCTTGT
132549 GAACATTTTTAACCATTTTCTT
1 GAACATTTTTAACCATTTTCTT
132571 ATTTCTATAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.26, C:0.17, G:0.07, T:0.50
Consensus pattern (24 bp):
GAACATTTTTAACCATTTTCTTGT
Found at i:133829 original size:166 final size:162
Alignment explanation
Indices: 133351--133847 Score: 593
Period size: 167 Copynumber: 3.0 Consensus size: 162
133341 ATCAAATCTG
* * ** * *
133351 TTTTAAAAAAATT-ATTTATTTTCATGAGTTTTGAATTTTTTCCTTGAAATTTTCTTATTTTCGA
1 TTTTAAAAAAATTCATTCATTTTAATGA-TTTTTCATTTTTTCCTTAAAATTCTC-T-TTTTCGA
* * * *
133415 AATACGAAATTTTTTGCTCTGTAAATGTTTTCGGAGGGATTTTTCTTGGTTTGTAATTTTTAAAA
63 AATACGAAGTTTTCTGCTCCGTAAATGTTTTCGGAGGGATTTTTCTTGGTTTTTAATTTTTAAAA
* *
133480 TTCATCAAATATTATTATTTATTTCATATTAAATT
128 TTCATCAAATATTATTATTTAATTCATATTAAATA
** * *
133515 TGTTTTCAAAAATTCATTCATTTTCATTCATTTTTCATTTTTTTCCTTAAAATTTCTCTATTTTC
1 T-TTTAAAAAAATTCATTCATTTT-AATGATTTTTCA-TTTTTTCCTTAAAA-TTCTCT-TTTTC
* * * * * * *
133580 GAAATACAAAGTTTTCTACTTCGTAAATATTTTCGAAGGGATTTTTCTTAGTCTTTAATTTTTAA
61 GAAATACGAAGTTTTCTGCTCCGTAAATGTTTTCGGAGGGATTTTTCTTGGTTTTTAATTTTTAA
*
133645 AATTTATCAAATATTATTATTTAATTCATATTAAATCA
126 AATTCATCAAATATTATTATTTAATTCATATTAAAT-A
* *
133683 TTTTAAAAAAATTCATTGATTTTAATGATTTTTTCATTTTTTCCTTAAAATTCTCTTGTTTCCAA
1 TTTTAAAAAAATTCATTCATTTTAATGA-TTTTTCATTTTTTCCTTAAAATTCTCTT-TTT-CGA
* * * *
133748 AATACGGAGTTTTCTGCTCCCTAAATGTTTTGGGAGGGATTTTTCTTGGTTTTTAATTTTGAAAA
63 AATACGAAGTTTTCTGCTCCGTAAATGTTTTCGGAGGGATTTTTCTTGGTTTTTAATTTTTAAAA
133813 TTCATCATAA-ATTATTATTTAATTCATATTAAATA
128 TTCATCA-AATATTATTATTTAATTCATATTAAATA
133848 AATTTTGAAA
Statistics
Matches: 281, Mismatches: 42, Indels: 19
0.82 0.12 0.06
Matches are distributed among these distances:
164 2 0.01
165 20 0.07
166 116 0.41
167 138 0.49
168 5 0.02
ACGTcount: A:0.30, C:0.10, G:0.09, T:0.51
Consensus pattern (162 bp):
TTTTAAAAAAATTCATTCATTTTAATGATTTTTCATTTTTTCCTTAAAATTCTCTTTTTCGAAAT
ACGAAGTTTTCTGCTCCGTAAATGTTTTCGGAGGGATTTTTCTTGGTTTTTAATTTTTAAAATTC
ATCAAATATTATTATTTAATTCATATTAAATA
Found at i:133890 original size:166 final size:163
Alignment explanation
Indices: 133351--133891 Score: 584
Period size: 166 Copynumber: 3.3 Consensus size: 163
133341 ATCAAATCTG
* * * *
133351 TTTTAAAAAAATT-ATTTATTTTCATGAGTTTTGAATTTTTTCCTTGAAATTTTCTTATTTTCGA
1 TTTT-AAAAAATTCATTCATTTTAATGAGTTTTGAATTTTTTCCTTAAAATTCTC-T-TTTTCGA
* * * *
133415 AATACGAAATTTTTTGCTCTGTAAATGTTTTCGGAGGGATTTTTCTTGGTTTGTAATTTTTAAAA
63 AATACGAAGTTTTCTGCTCCGTAAATGTTTTCGGAGGGATTTTTCTTGGTTTTTAATTTTTAAAA
* **
133480 TTCATCAAATATTATTATTTATTTCATATTAAATTTG
128 TTCATCAAATATTATTATTTAATTCATATTAAA-TAA
* * * * * *
133517 TTTTCAAAAATTCATTCATTTTCATTCATTTTTCATTTTTTTCCTTAAAATTTCTCTATTTTCGA
1 TTTTAAAAAATTCATTCATTTT-AATGAGTTTTGAATTTTTTCCTTAAAA-TTCTCT-TTTTCGA
* * * * * * *
133582 AATACAAAGTTTTCTACTTCGTAAATATTTTCGAAGGGATTTTTCTTAGTCTTTAATTTTTAAAA
63 AATACGAAGTTTTCTGCTCCGTAAATGTTTTCGGAGGGATTTTTCTTGGTTTTTAATTTTTAAAA
* *
133647 TTTATCAAATATTATTATTTAATTCATATTAAATCA
128 TTCATCAAATATTATTATTTAATTCATATTAAATAA
* * ** *
133683 TTTTAAAAAAATTCATTGATTTTAATGATTTTTTCATTTTTTCCTTAAAATTCTCTTGTTTCCAA
1 TTTT-AAAAAATTCATTCATTTTAATGAGTTTTGAATTTTTTCCTTAAAATTCTCTT-TTT-CGA
* * * *
133748 AATACGGAGTTTTCTGCTCCCTAAATGTTTTGGGAGGGATTTTTCTTGGTTTTTAATTTTGAAAA
63 AATACGAAGTTTTCTGCTCCGTAAATGTTTTCGGAGGGATTTTTCTTGGTTTTTAATTTTTAAAA
133813 TTCATCATAA-ATTATTATTTAATTCATATTAAATAAA
128 TTCATCA-AATATTATTATTTAATTCATATTAAAT-AA
* * * * *
133850 TTTTGAAAATTTAATTTATTGTT-AGGAGTTTTGAATTTTTTC
1 TTTTAAAAAATTCATTCATT-TTAATGAGTTTTGAATTTTTTC
133892 TTATATATTA
Statistics
Matches: 312, Mismatches: 54, Indels: 18
0.81 0.14 0.05
Matches are distributed among these distances:
164 1 0.00
165 16 0.05
166 152 0.49
167 139 0.45
168 4 0.01
ACGTcount: A:0.30, C:0.10, G:0.09, T:0.51
Consensus pattern (163 bp):
TTTTAAAAAATTCATTCATTTTAATGAGTTTTGAATTTTTTCCTTAAAATTCTCTTTTTCGAAAT
ACGAAGTTTTCTGCTCCGTAAATGTTTTCGGAGGGATTTTTCTTGGTTTTTAATTTTTAAAATTC
ATCAAATATTATTATTTAATTCATATTAAATAA
Found at i:134238 original size:10 final size:10
Alignment explanation
Indices: 134223--134256 Score: 52
Period size: 10 Copynumber: 3.5 Consensus size: 10
134213 AGAGGGAATA
134223 AAAAAGAAAG
1 AAAAAGAAAG
134233 AAAAAGAAAG
1 AAAAAGAAAG
*
134243 -AAAAGAGAG
1 AAAAAGAAAG
134252 AAAAA
1 AAAAA
134257 ATAAGGAAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
9 8 0.36
10 14 0.64
ACGTcount: A:0.79, C:0.00, G:0.21, T:0.00
Consensus pattern (10 bp):
AAAAAGAAAG
Found at i:143548 original size:130 final size:127
Alignment explanation
Indices: 143343--143808 Score: 434
Period size: 130 Copynumber: 3.6 Consensus size: 127
143333 AGATAATAAT
* ** * * * *
143343 GGGGTAGGAGTATCCCCTCGAAAATAACAGGGTTAGAATATCCCCGATTGTGAAAAATCGATGA-
1 GGGGTTGGAGTATCCCCTCGAAAATAATGGGGTTGGAATATCCCCAATTATGAAAAATCAAT-AT
* * *
143407 TTTAGAAATAAGGCAAGGGTTGAAGTGTCCCCGATTATAGAAAATAGATGTTTCAAAAATAAAAT
65 TTTAGAAATAAGGC-AGGGTTGAAGTATCCCCGATTGT-GAAAATAGATGTTTTAAAAATAAAA-
143472 C
127 C
** * *
143473 AAGATTGGAGTATCCCCGT-GAAAATAATGGGGTTGGAATATCCCCAATTATGAGAAATCAATAT
1 GGGGTTGGAGTATCCCC-TCGAAAATAATGGGGTTGGAATATCCCCAATTATGAAAAATCAATAT
* * * *
143537 TTTAGAAATAAGGCCGGGGTTGAAGTATCCCTGATTGTGAGAAATCA-ATATTTTGAAAATAAAG
65 TTTAGAAATAAGG-CAGGGTTGAAGTATCCCCGATTGTGA-AAAT-AGATGTTTTAAAAATAAA-
*
143601 CC
126 AC
* * * * * *
143603 GGGGTTGGAGTATCCCCTCGAAAATAATGAGGTTGGAGTATCCCCGATTATGGAAAAATTAGTGT
1 GGGGTTGGAGTATCCCCTCGAAAATAATGGGGTTGGAATATCCCCAATTAT-GAAAAATCAATAT
* ** * * * * * * *
143668 TTTGGAAATAAAATCAGAGTTGAAATATCCTCGATTGTGGAGAATTGGTGTTTTAGAAATAAAAC
65 TTTAGAAAT-AAGGCAGGGTTGAAGTATCCCCGATTGT-GAAAATAGATGTTTTAAAAATAAAAC
* * ** *
143733 TGGGGTTGGAGTATCCTCTCGAAAATAATGGGGTTGGAGTATCCCCAATTATGAAAAATTGATGT
1 -GGGGTTGGAGTATCCCCTCGAAAATAATGGGGTTGGAATATCCCCAATTATGAAAAATCAATAT
143798 TTTAGAAATAA
65 TTTAGAAATAA
143809 AACTGGGGTT
Statistics
Matches: 274, Mismatches: 50, Indels: 25
0.79 0.14 0.07
Matches are distributed among these distances:
129 6 0.02
130 162 0.59
131 102 0.37
132 4 0.01
ACGTcount: A:0.36, C:0.12, G:0.24, T:0.28
Consensus pattern (127 bp):
GGGGTTGGAGTATCCCCTCGAAAATAATGGGGTTGGAATATCCCCAATTATGAAAAATCAATATT
TTAGAAATAAGGCAGGGTTGAAGTATCCCCGATTGTGAAAATAGATGTTTTAAAAATAAAAC
Found at i:143567 original size:51 final size:51
Alignment explanation
Indices: 143501--143619 Score: 161
Period size: 51 Copynumber: 2.3 Consensus size: 51
143491 TGAAAATAAT
*
143501 GGGGTTGGAA-TATCCCCAATTATGAGAAATCAATATTTT-AGAAATAAGGCC
1 GGGGTT-GAAGTATCCCCAATTATGAGAAATCAATATTTTGA-AAATAAAGCC
** *
143552 GGGGTTGAAGTATCCCTGATTGTGAGAAATCAATATTTTGAAAATAAAGCC
1 GGGGTTGAAGTATCCCCAATTATGAGAAATCAATATTTTGAAAATAAAGCC
*
143603 GGGGTTGGAGTATCCCC
1 GGGGTTGAAGTATCCCC
143620 TCGAAAATAA
Statistics
Matches: 60, Mismatches: 6, Indels: 4
0.86 0.09 0.06
Matches are distributed among these distances:
50 3 0.05
51 56 0.93
52 1 0.02
ACGTcount: A:0.33, C:0.14, G:0.25, T:0.28
Consensus pattern (51 bp):
GGGGTTGAAGTATCCCCAATTATGAGAAATCAATATTTTGAAAATAAAGCC
Found at i:143748 original size:51 final size:52
Alignment explanation
Indices: 143633--143750 Score: 132
Period size: 51 Copynumber: 2.3 Consensus size: 52
143623 AAAATAATGA
* *
143633 GGTTGGAGTATCCCCGATTATGGAAAAATTAGTGTTTTGGAAATAAAATCAG
1 GGTTGGAGTATCCTCGATTATGGAAAAATTAGTGTTTTAGAAATAAAATCAG
* * * * * * *
143685 AGTTGAAATATCCTCGATTGTGG-AGAATTGGTGTTTTAGAAATAAAA-CTGG
1 GGTTGGAGTATCCTCGATTATGGAAAAATTAGTGTTTTAGAAATAAAATC-AG
143736 GGTTGGAGTATCCTC
1 GGTTGGAGTATCCTC
143751 TCGAAAATAA
Statistics
Matches: 53, Mismatches: 12, Indels: 3
0.78 0.18 0.04
Matches are distributed among these distances:
50 1 0.02
51 34 0.64
52 18 0.34
ACGTcount: A:0.31, C:0.10, G:0.26, T:0.32
Consensus pattern (52 bp):
GGTTGGAGTATCCTCGATTATGGAAAAATTAGTGTTTTAGAAATAAAATCAG
Found at i:143824 original size:79 final size:78
Alignment explanation
Indices: 143716--143984 Score: 362
Period size: 79 Copynumber: 3.4 Consensus size: 78
143706 GGAGAATTGG
* *
143716 TGTTTTAGAAATAAAACTGGGGTTGGAGTATCCTCTCGAAAATAATGGGGTTGGAGTATCCCCAA
1 TGTTTTAGAAATAAAACTGGGGTTGGAGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCCC-A
*
143781 TTATGAAAAATTGA
65 TTATGAAAAATTAA
* * *
143795 TGTTTTAGAAATAAAACTGGGGTTGGAGTATCCCCTCGGAAATGACGGGGTTAGAGTATCCCCGA
1 TGTTTTAGAAATAAAACTGGGGTTGGAGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCCC-A
*
143860 TTATGAGAAATTAA
65 TTATGAAAAATTAA
* * ** *
143874 TATTTTAAAAATAAAGTTAGGGTTGGAGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCCC--
1 TGTTTTAGAAATAAAACTGGGGTTGGAGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCCCAT
*
143937 GATGAAAAATTAA
66 TATGAAAAATTAA
* * *
143950 TGTTTAAGAAATAAAACCGGGGTTAGAGTATCCCC
1 TGTTTTAGAAATAAAACTGGGGTTGGAGTATCCCC
143985 GATTAAGAAA
Statistics
Matches: 164, Mismatches: 26, Indels: 3
0.85 0.13 0.02
Matches are distributed among these distances:
76 38 0.23
79 126 0.77
ACGTcount: A:0.34, C:0.13, G:0.24, T:0.28
Consensus pattern (78 bp):
TGTTTTAGAAATAAAACTGGGGTTGGAGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCCCAT
TATGAAAAATTAA
Found at i:144019 original size:51 final size:48
Alignment explanation
Indices: 143919--144047 Score: 132
Period size: 51 Copynumber: 2.6 Consensus size: 48
143909 TCGAAAATAA
*
143919 CGGGGTTGGAGTATCCCCGATGAAAAATTAATGTTTAAGAAATAAAAC
1 CGGGGTTGGAGTATCCCCGATGAAAAATTAACGTTTAAGAAATAAAAC
* * ** **
143967 CGGGGTTAGAGTATCCCCGATTAAGAAAAATTGACGTTTTGGAAATGGAAC
1 CGGGGTTGGAGTATCCCCGA-T--GAAAAATTAACGTTTAAGAAATAAAAC
* *
144018 CGAGATTGGAGTATCCCCGAGATGAAAAAT
1 CGGGGTTGGAGTATCCCC--GATGAAAAAT
144048 CTAGAAATTT
Statistics
Matches: 66, Mismatches: 10, Indels: 8
0.79 0.12 0.10
Matches are distributed among these distances:
48 19 0.29
49 1 0.02
50 7 0.11
51 36 0.55
52 1 0.02
53 2 0.03
ACGTcount: A:0.36, C:0.14, G:0.26, T:0.24
Consensus pattern (48 bp):
CGGGGTTGGAGTATCCCCGATGAAAAATTAACGTTTAAGAAATAAAAC
Found at i:146381 original size:33 final size:33
Alignment explanation
Indices: 146336--146405 Score: 122
Period size: 33 Copynumber: 2.1 Consensus size: 33
146326 AAAATGCCTA
*
146336 AATGTATCGATACAATGAGCCATGTATCGATAC
1 AATGTATCGATACAATGAGCAATGTATCGATAC
*
146369 AATGTATTGATACAATGAGCAATGTATCGATAC
1 AATGTATCGATACAATGAGCAATGTATCGATAC
146402 AATG
1 AATG
146406 CAAAATGTAT
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
33 35 1.00
ACGTcount: A:0.39, C:0.14, G:0.19, T:0.29
Consensus pattern (33 bp):
AATGTATCGATACAATGAGCAATGTATCGATAC
Found at i:146391 original size:20 final size:20
Alignment explanation
Indices: 146336--146422 Score: 82
Period size: 20 Copynumber: 4.7 Consensus size: 20
146326 AAAATGCCTA
146336 AATGTATCGATACAATGAGC
1 AATGTATCGATACAATGAGC
*
146356 CATGTATCG-----AT-A-C
1 AATGTATCGATACAATGAGC
*
146369 AATGTATTGATACAATGAGC
1 AATGTATCGATACAATGAGC
*
146389 AATGTATCGATACAATGCA-A
1 AATGTATCGATACAATG-AGC
146409 AATGTATCGATACA
1 AATGTATCGATACA
146423 TCTAGGTAAA
Statistics
Matches: 54, Mismatches: 5, Indels: 16
0.72 0.07 0.21
Matches are distributed among these distances:
13 8 0.15
14 1 0.02
15 2 0.04
18 2 0.04
19 1 0.02
20 39 0.72
21 1 0.02
ACGTcount: A:0.40, C:0.15, G:0.17, T:0.28
Consensus pattern (20 bp):
AATGTATCGATACAATGAGC
Found at i:147233 original size:42 final size:43
Alignment explanation
Indices: 147157--147351 Score: 184
Period size: 42 Copynumber: 4.5 Consensus size: 43
147147 AAAAAGAGTA
* *
147157 CGTCCTGCT-TTTCGAGGATAAAGGAAAAAAGGAAAACGAAA-TG
1 CGTCCTGCTCTTT-GAGGACAAAAG-AAAAAGGAAAACGAAAGTG
* * *
147200 CGTCCTACTCTTTGAGGATAAAAGAAAGAGGAAAAC-AAAGTG
1 CGTCCTGCTCTTTGAGGACAAAAGAAAAAGGAAAACGAAAGTG
* ** **
147242 TGTCCTATTCTTTGAGGACAAAAGAGAAAATAAAGGAACG-AAGTG
1 CGTCCTGCTCTTTGAGGACAAAAGA-AAAAGGAA--AACGAAAGTG
* * * *
147287 TGTCCTGCTCTTTGAGGACAAAAGAGAGAGGAAAA-TAAAGTG
1 CGTCCTGCTCTTTGAGGACAAAAGAAAAAGGAAAACGAAAGTG
147329 CGTCCTGCTCTTTGAGGACAAAA
1 CGTCCTGCTCTTTGAGGACAAAA
147352 AAGTGTCACC
Statistics
Matches: 128, Mismatches: 17, Indels: 15
0.80 0.11 0.09
Matches are distributed among these distances:
41 3 0.02
42 64 0.50
43 23 0.18
44 7 0.05
45 31 0.24
ACGTcount: A:0.39, C:0.14, G:0.25, T:0.21
Consensus pattern (43 bp):
CGTCCTGCTCTTTGAGGACAAAAGAAAAAGGAAAACGAAAGTG
Found at i:147292 original size:87 final size:87
Alignment explanation
Indices: 147191--147351 Score: 241
Period size: 87 Copynumber: 1.9 Consensus size: 87
147181 AAAAAAGGAA
* * *
147191 AACGAAATGCGTCCTACTCTTTGAGGATAAAAGAAAGAGGAAAACAAAGTGTGTCCTATTCTTTG
1 AACGAAATGCGTCCTACTCTTTGAGGACAAAAGAAAGAGGAAAACAAAGTGCGTCCTACTCTTTG
147256 AGGACAAAAGAGAAAATAAAGG
66 AGGACAAAAGAGAAAATAAAGG
* * * * * *
147278 AACGAAGTGTGTCCTGCTCTTTGAGGACAAAAGAGAGAGGAAAATAAAGTGCGTCCTGCTCTTTG
1 AACGAAATGCGTCCTACTCTTTGAGGACAAAAGAAAGAGGAAAACAAAGTGCGTCCTACTCTTTG
147343 AGGACAAAA
66 AGGACAAAA
147352 AAGTGTCACC
Statistics
Matches: 65, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
87 65 1.00
ACGTcount: A:0.40, C:0.14, G:0.25, T:0.21
Consensus pattern (87 bp):
AACGAAATGCGTCCTACTCTTTGAGGACAAAAGAAAGAGGAAAACAAAGTGCGTCCTACTCTTTG
AGGACAAAAGAGAAAATAAAGG
Found at i:147416 original size:61 final size:61
Alignment explanation
Indices: 147318--147642 Score: 266
Period size: 61 Copynumber: 5.5 Consensus size: 61
147308 AAGAGAGAGG
* *** * *
147318 AAAATAAAGTGCGTCCTGCTCTTTGAGGACAAAAAAGTGTCACCAACTCGTGTGGGCTTTGA
1 AAAAGAAAG-GCGTCCTGCTCTTTGAGGACTGGAAAGTGCCACCAACTTGTGTGGGCTTTGA
* * *
147380 AAAAGAAAGGCGTCCTACTCTTTGAGGATTGGAAAGTGCCATCAACTTGTGTGGGCTTTGCA
1 AAAAGAAAGGCGTCCTGCTCTTTGAGGACTGGAAAGTGCCACCAACTTGTGTGGGCTTTG-A
* * * * * * * *
147442 AAGAGAAA-GCATCCTGCCCATTAAGGACTGGAAAATGCCACCAACTTGGGTGAGCTTTG-
1 AAAAGAAAGGCGTCCTGCTCTTTGAGGACTGGAAAGTGCCACCAACTTGTGTGGGCTTTGA
* * * * * * *
147501 AAAGGAAAAGGCGTCATGCCCTTTAAGGACTAGAAAAATGCCACCAACTTGTATGGGCTTT--
1 AAAAG-AAAGGCGTCCTGCTCTTTGAGGACT-GGAAAGTGCCACCAACTTGTGTGGGCTTTGA
* *
147562 ----GAAAGGTGTCCTACTCTTTGAGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTT--
1 AAAAGAAAGGCGTCCTGCTCTTTGAGGACTGGAAA-GTGCCACCAACTTGTGTGGGCTTTGA
147617 ----GAAAGGCGTCCTGCTCTTTGAGGACT
1 AAAAGAAAGGCGTCCTGCTCTTTGAGGACT
147643 AAAGGGTGAA
Statistics
Matches: 219, Mismatches: 39, Indels: 17
0.80 0.14 0.06
Matches are distributed among these distances:
54 3 0.01
55 46 0.21
56 20 0.09
57 1 0.00
59 3 0.01
60 3 0.01
61 102 0.47
62 41 0.19
ACGTcount: A:0.29, C:0.20, G:0.26, T:0.25
Consensus pattern (61 bp):
AAAAGAAAGGCGTCCTGCTCTTTGAGGACTGGAAAGTGCCACCAACTTGTGTGGGCTTTGA
Found at i:147604 original size:55 final size:55
Alignment explanation
Indices: 147507--147647 Score: 185
Period size: 55 Copynumber: 2.6 Consensus size: 55
147497 TTTGAAAGGA
* * * * **
147507 AAAGGCGTCATGCCCTTTAAGGACTAGAAAAATGCCACCAACTTGTATGGGCTTTG
1 AAAGGCGTCCTACTCTTTGAGGACT-GAAAGGTGCCACCAACTTGTATGGGCTTTG
* *
147563 AAAGGTGTCCTACTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTG
1 AAAGGCGTCCTACTCTTTGAGGACTGAAAGGTGCCACCAACTTGTATGGGCTTTG
*
147618 AAAGGCGTCCTGCTCTTTGAGGACT-AAAGG
1 AAAGGCGTCCTACTCTTTGAGGACTGAAAGG
147648 GTGAAAGGAG
Statistics
Matches: 75, Mismatches: 10, Indels: 2
0.86 0.11 0.02
Matches are distributed among these distances:
54 5 0.07
55 50 0.67
56 20 0.27
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (55 bp):
AAAGGCGTCCTACTCTTTGAGGACTGAAAGGTGCCACCAACTTGTATGGGCTTTG
Found at i:147733 original size:60 final size:60
Alignment explanation
Indices: 147651--147858 Score: 252
Period size: 60 Copynumber: 3.5 Consensus size: 60
147641 CTAAAGGGTG
* * *
147651 AAAGGAG-AGAGCGTCCTACTCTTTGAGGACTAGGAAGTGCCACCAACTTGTGT-GGCTTT
1 AAAGGAGAAG-GCATCCTGCTCTTTGAGGACTAGGAAATGCCACCAACTTGTGTGGGCTTT
*
147710 AAAAGGAGAAGGCATCCTGCTCTTTGAGGA-TTGGAAATGCCACCAACTTGTGTGGGCTTT
1 -AAAGGAGAAGGCATCCTGCTCTTTGAGGACTAGGAAATGCCACCAACTTGTGTGGGCTTT
* ** *
147770 GAAAGGAAAAGGCGCCCTGCTCTTTGAGGACTAGAAAAATGCCACCAACTTGTGTGGGCTTT
1 -AAAGGAGAAGGCATCCTGCTCTTTGAGGACTAG-GAAATGCCACCAACTTGTGTGGGCTTT
147832 --A--A-AAGGCATCCTGCTCTTTGAGGACTA
1 AAAGGAGAAGGCATCCTGCTCTTTGAGGACTA
147859 AAGGGCGAAA
Statistics
Matches: 132, Mismatches: 12, Indels: 12
0.85 0.08 0.08
Matches are distributed among these distances:
56 23 0.17
57 1 0.01
59 22 0.17
60 56 0.42
61 4 0.03
62 26 0.20
ACGTcount: A:0.27, C:0.20, G:0.27, T:0.25
Consensus pattern (60 bp):
AAAGGAGAAGGCATCCTGCTCTTTGAGGACTAGGAAATGCCACCAACTTGTGTGGGCTTT
Found at i:147847 original size:215 final size:208
Alignment explanation
Indices: 147477--148075 Score: 829
Period size: 215 Copynumber: 2.8 Consensus size: 208
147467 GACTGGAAAA
* * * * * * * * *
147477 TGCCACCAACTTGGGTGAGCTTTGAAAGGAAAAGGCGTCATGCCCTTTAAGGACTAGAAAAATGC
1 TGCCACCAACTTGTGTG-GCTTTAAAAGGAGAAGGCATCCTGCTCTTTGAGGA-TTG-GAAATGC
* * **
147542 CACCAACTTGTATGGGCTTTGAAAGGTGTCCTACTCTTTGAGGACTGAAAGGTGCCACCAACTTG
63 CACCAACTTGTGTGGGCTTTGAAAGGTGTCCTGCTCTTTGAGGACTGAAAAATGCCACCAACTTG
*
147607 TGTGGGCTTTGAAAGGCGTCCTGCTCTTTGAGGACTAAAGGGTGAAAGGAGAGAGCGTCCTACTC
128 TGTGGGCTTTAAAAGGCGTCCTGCTCTTTGAGGACTAAAGGGTGAAAGGAGAGAGCGTCCTACTC
147672 TTTGAGGACTAGGAAG
193 TTTGAGGACTAGGAAG
147688 TGCCACCAACTTGTGTGGCTTTAAAAGGAGAAGGCATCCTGCTCTTTGAGGATTGGAAATGCCAC
1 TGCCACCAACTTGTGTGGCTTTAAAAGGAGAAGGCATCCTGCTCTTTGAGGATTGGAAATGCCAC
* *
147753 CAACTTGTGTGGGCTTTGAAAGGAAAAGGCGCCCTGCTCTTTGAGGACTAGAAAAATGCCACCAA
66 CAACTTGTGTGGGCTTT-----G-AAAGGTGTCCTGCTCTTTGAGGACT-GAAAAATGCCACCAA
* *
147818 CTTGTGTGGGCTTTAAAAGGCATCCTGCTCTTTGAGGACTAAAGGGCGAAAGGAGAGAGCGTCCT
124 CTTGTGTGGGCTTTAAAAGGCGTCCTGCTCTTTGAGGACTAAAGGGTGAAAGGAGAGAGCGTCCT
* *
147883 GCTCTTTGAGGACTTGGAAG
189 ACTCTTTGAGGACTAGGAAG
* * * *
147903 TGCCACCAACTTGTGTGGGCTTTAAAATGAGAAAGCATCCTACTCTTTGAGGACTGGAAAATGCC
1 TGCCACCAACTTGTGT-GGCTTTAAAAGGAGAAGGCATCCTGCTCTTTGAGGATTGG-AAATGCC
* *
147968 GCCAACTTGTGTGGGCTTTGAAAGGTGTCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGT
64 ACCAACTTGTGTGGGCTTTGAAAGGTGTCCTGCTCTTTGAGGACTGAAAAATGCCACCAACTTGT
* * *
148033 GTGGGCTTTAAGAGGCGTCCTGCTCTTTGAGGACAAAAAGGTG
129 GTGGGCTTTAAAAGGCGTCCTGCTCTTTGAGGACTAAAGGGTG
148076 CCACCAACTT
Statistics
Matches: 346, Mismatches: 33, Indels: 19
0.87 0.08 0.05
Matches are distributed among these distances:
208 25 0.07
209 2 0.01
210 86 0.25
211 39 0.11
212 1 0.00
213 1 0.00
214 22 0.06
215 109 0.32
216 36 0.10
217 25 0.07
ACGTcount: A:0.26, C:0.20, G:0.29, T:0.25
Consensus pattern (208 bp):
TGCCACCAACTTGTGTGGCTTTAAAAGGAGAAGGCATCCTGCTCTTTGAGGATTGGAAATGCCAC
CAACTTGTGTGGGCTTTGAAAGGTGTCCTGCTCTTTGAGGACTGAAAAATGCCACCAACTTGTGT
GGGCTTTAAAAGGCGTCCTGCTCTTTGAGGACTAAAGGGTGAAAGGAGAGAGCGTCCTACTCTTT
GAGGACTAGGAAG
Found at i:147979 original size:61 final size:61
Alignment explanation
Indices: 147870--148399 Score: 576
Period size: 61 Copynumber: 9.0 Consensus size: 61
147860 AGGGCGAAAG
* * *
147870 GAGAGAGCGTCCTGCTCTTTGAGGACTTGG-AAGTGCCACCAACTTGTGTGGGCTTTAAAAT
1 GAGAAAGCATCCTGCTCTTTGAGGAC-TGGAAAGTGCCACCAACTTGTGTGGGCTTTAAAAA
* * * *
147931 GAGAAAGCATCCTACTCTTTGAGGACTGGAAAATGCCGCCAACTTGTGTGGGCTTT-GAAA
1 GAGAAAGCATCCTGCTCTTTGAGGACTGGAAAGTGCCACCAACTTGTGTGGGCTTTAAAAA
* *
147991 G-G--TG--TCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTT---AA
1 GAGAAAGCATCCTGCTCTTTGAGGACTGGAAAGTGCCACCAACTTGTGTGGGCTTTAAAAA
* **
148044 GAG---GCGTCCTGCTCTTTGAGGAC-AAAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAA
1 GAGAAAGCATCCTGCTCTTTGAGGACTGGAAA-GTGCCACCAACTTGTGTGGGCTTTAAAAA
148102 GA-AAAGGCATCCTGCTCTTTGAGGACTAGG-AAGTGCCACCAACTTGTGTGGGCTTTAAAAA
1 GAGAAA-GCATCCTGCTCTTTGAGGACT-GGAAAGTGCCACCAACTTGTGTGGGCTTTAAAAA
* *
148163 GA-AAAGGCATCCTGCTCGTTGAGGACTGGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAA
1 GAGAAA-GCATCCTGCTCTTTGAGGACTGGAAAGTGCCACCAACTTGTGTGGGCTTTAAAAA
* * *
148224 GA-AAAGGCATCCTACTCTTTGAAGATTGGGAAA-TGCCACCAACTTGTGTGGGCTTT---AA
1 GAGAAA-GCATCCTGCTCTTTGAGGACT-GGAAAGTGCCACCAACTTGTGTGGGCTTTAAAAA
* *
148282 GAG---GCGTCCTGCTCTTTGAAGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAA
1 GAGAAAGCATCCTGCTCTTTGAGGACTGGAAA-GTGCCACCAACTTGTGTGGGCTTTAAAAA
* * *
148340 GA-AAAGGCGTCCTACTCTTTGAGGACTAGG-AAGTGCCACCAACATGTGTGGGCTTTAAAA
1 GAGAAA-GCATCCTGCTCTTTGAGGACT-GGAAAGTGCCACCAACTTGTGTGGGCTTTAAAA
148400 GGTGTCCTGC
Statistics
Matches: 413, Mismatches: 28, Indels: 56
0.83 0.06 0.11
Matches are distributed among these distances:
53 8 0.02
54 4 0.01
55 126 0.31
57 1 0.00
58 12 0.03
59 1 0.00
60 8 0.02
61 244 0.59
62 8 0.02
63 1 0.00
ACGTcount: A:0.27, C:0.20, G:0.27, T:0.26
Consensus pattern (61 bp):
GAGAAAGCATCCTGCTCTTTGAGGACTGGAAAGTGCCACCAACTTGTGTGGGCTTTAAAAA
Found at i:147999 original size:155 final size:155
Alignment explanation
Indices: 147711--148161 Score: 453
Period size: 171 Copynumber: 2.8 Consensus size: 155
147701 TGTGGCTTTA
*
147711 AAAGGAGAAGGCATCCTGCTCTTTGAGGATTGGAAATGCCACCAACTTGTGTGGGCTTTGAAAGG
1 AAAGGAGAAGGCATCCTGCTCTTTGAGGATTGGAAATGCCACCAACTTGTGTGGGCTTTAAAAGG
* *
147776 AAAAGGCGCCCTGCTCTTTGAGGACTAGAAAAATGCCACCAACTTGTGTGGGCTTTAAAAGGCAT
66 AAAAGGCACCCTACTCTTTGAGGACTAGAAAAATGCCACCAACTTGTGTGGGCTTTAAAAGGCAT
147841 CCTGCTCTTTGAGGACTAAAGGGCG
131 CCTGCTCTTTGAGGACTAAAGGGCG
* *
147866 AAAGGAG-AGAGCGTCCTGCTCTTTGAGGACTTGGAAGTGCCACCAACTTGTGTGGGCTTTAAAA
1 AAAGGAGAAG-GCATCCTGCTCTTTGAGGA-TTGGAAATGCCACCAACTTGTGTGGGCTTTAAAA
* * * * *
147930 TGAGAAA-GCATCCTACTCTTTGAGGACT-GGAAAATGCCGCCAACTTGTGTGGGCTTTGAAAGG
64 GGA-AAAGGCACCCTACTCTTTGAGGACTAGAAAAATGCCACCAACTTGTGTGGGCTTTAAAAGG
** ** *
147993 TGTCCTGCTCTTTGAGGACTGGAAAATGCC
128 CATCCTGCTCTTTGAGGACT--AAAGGGCG
* * ***
148023 ACCAACTTGTGTGGGCTTTAAGAGGCGTCCTGCTCTTTGAGGA-CAAAAAGGTGCCACCAACTTG
1 A--AA-----G-GAG-----A-AGGCATCCTGCTCTTTGAGGATTGGAAA--TGCCACCAACTTG
* * * * *
148087 TGTGGGCTTTAAAAAGAAAAGGCATCCTGCTCTTTGAGGACTAG-GAAGTGCCACCAACTTGTGT
50 TGTGGGCTTTAAAAGGAAAAGGCACCCTACTCTTTGAGGACTAGAAAAATGCCACCAACTTGTGT
148151 GGGCTTTAAAA
115 GGGCTTTAAAA
148162 AGAAAAGGCA
Statistics
Matches: 246, Mismatches: 26, Indels: 32
0.81 0.09 0.11
Matches are distributed among these distances:
154 2 0.01
155 75 0.30
156 52 0.21
157 9 0.04
159 2 0.01
164 1 0.00
165 2 0.01
169 2 0.01
170 3 0.01
171 95 0.39
172 3 0.01
ACGTcount: A:0.27, C:0.20, G:0.28, T:0.25
Consensus pattern (155 bp):
AAAGGAGAAGGCATCCTGCTCTTTGAGGATTGGAAATGCCACCAACTTGTGTGGGCTTTAAAAGG
AAAAGGCACCCTACTCTTTGAGGACTAGAAAAATGCCACCAACTTGTGTGGGCTTTAAAAGGCAT
CCTGCTCTTTGAGGACTAAAGGGCG
Found at i:148108 original size:116 final size:115
Alignment explanation
Indices: 147876--148429 Score: 656
Period size: 116 Copynumber: 4.7 Consensus size: 115
147866 AAAGGAGAGA
*
147876 GCGTCCTGCTCTTTGAGGACTTGGAAGTGCCACCAACTTGTGTGGGCTTTAAAATGAGAAAGCAT
1 GCGTCCTGCTCTTTGAGGAC-TGGAAGTGCCACCAACTTGTGTGGGCTTT--AA-GAG---GCGT
* *
147941 CCTACTCTTTGAGGACTGGAAAA-TGCCGCCAACTTGTGTGGGCTTT-----G-AAAG
59 CCTGCTCTTTGAGGACT-GAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAAGAAAAG
* *
147992 GTGTCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTAAGAGGCGTCCTGCT
1 GCGTCCTGCTCTTTGAGGACTGG-AAGTGCCACCAACTTGTGTGGGCTTTAAGAGGCGTCCTGCT
*
148057 CTTTGAGGAC-AAAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAAGAAAAG
65 CTTTGAGGACTGAAAA-GTGCCACCAACTTGTGTGGGCTTTAAAAAGAAAAG
* *
148108 GCATCCTGCTCTTTGAGGACTAGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAAGAAAAGGCAT
1 GCGTCCTGCTCTTTGAGGACT-GGAAGTGCCACCAACTTGTGTGGGCTTT---AAG---AGGCGT
* **
148173 CCTGCTCGTTGAGGACTGGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAAGAAAAG
59 CCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAAGAAAAG
* * * * *
148230 GCATCCTACTCTTTGAAGATTGGGAAATGCCACCAACTTGTGTGGGCTTTAAGAGGCGTCCTGCT
1 GCGTCCTGCTCTTTGAGGACT-GGAAGTGCCACCAACTTGTGTGGGCTTTAAGAGGCGTCCTGCT
* *
148295 CTTTGAAGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAAGAAAAG
65 CTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAAGAAAAG
* * * *
148346 GCGTCCTACTCTTTGAGGACTAGGAAGTGCCACCAACATGTGTGGGCTTTAAAAGGTGTCCTGCT
1 GCGTCCTGCTCTTTGAGGACT-GGAAGTGCCACCAACTTGTGTGGGCTTTAAGAGGCGTCCTGCT
* * *
148411 CTTTAAAGACTAAAAAGTG
65 CTTTGAGGACTGAAAAGTG
148430 AAAGGAGAAA
Statistics
Matches: 385, Mismatches: 36, Indels: 34
0.85 0.08 0.07
Matches are distributed among these distances:
108 4 0.01
110 40 0.10
113 3 0.01
114 2 0.01
115 4 0.01
116 222 0.58
117 2 0.01
119 6 0.02
122 100 0.26
123 2 0.01
ACGTcount: A:0.27, C:0.20, G:0.27, T:0.26
Consensus pattern (115 bp):
GCGTCCTGCTCTTTGAGGACTGGAAGTGCCACCAACTTGTGTGGGCTTTAAGAGGCGTCCTGCTC
TTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAAGAAAAG
Found at i:148337 original size:238 final size:232
Alignment explanation
Indices: 147879--148399 Score: 801
Period size: 238 Copynumber: 2.2 Consensus size: 232
147869 GGAGAGAGCG
* *
147879 TCCTGCTCTTTGAGGACTTGGAAGTGCCACCAACTTGTGTGGGCTTTAAAATGAGAAAGCATCCT
1 TCCTGCTCTTTGAGGACTAGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAAGAGAAAGCATCCT
* * ** * *
147944 ACTCTTTGAGGACTGGAAAATGCCGCCAACTTGTGTGGGCTTTGAAAGGTGTCCTGCTCTTTGAG
66 ACTCGTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGCATCCTACTCTTTGAA
*
148009 GACTGGAAAATGCCACCAACTTGTGTGGGCTTTAAGAGGCGTCCTGCTCTTTGAGGACAAAAAGG
131 GACTGGAAAATGCCACCAACTTGTGTGGGCTTTAAGAGGCGTCCTGCTCTTTGAAGACAAAAAGG
148074 TGCCACCAACTTGTGTGGGCTTTAAAAAGAAAAGGCA
196 TGCCACCAACTTGTGTGGGCTTTAAAAAGAAAAGGCA
148111 TCCTGCTCTTTGAGGACTAGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAAGA-AAAGGCATCC
1 TCCTGCTCTTTGAGGACTAGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAAGAGAAA-GCATCC
* * *
148175 TGCTCGTTGAGGACTGGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAAGAAAAGGCATCCTACT
65 TACTCGTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTT-----G-AAAGGCATCCTACT
* *
148240 CTTTGAAGATTGGGAAATGCCACCAACTTGTGTGGGCTTTAAGAGGCGTCCTGCTCTTTGAAGAC
124 CTTTGAAGACTGGAAAATGCCACCAACTTGTGTGGGCTTTAAGAGGCGTCCTGCTCTTTGAAGAC
** *
148305 TGAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAAGAAAAGGCG
189 AAAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAAGAAAAGGCA
* *
148349 TCCTACTCTTTGAGGACTAGGAAGTGCCACCAACATGTGTGGGCTTTAAAA
1 TCCTGCTCTTTGAGGACTAGGAAGTGCCACCAACTTGTGTGGGCTTTAAAA
148400 GGTGTCCTGC
Statistics
Matches: 263, Mismatches: 19, Indels: 8
0.91 0.07 0.03
Matches are distributed among these distances:
231 3 0.01
232 97 0.37
237 1 0.00
238 162 0.62
ACGTcount: A:0.27, C:0.20, G:0.27, T:0.26
Consensus pattern (232 bp):
TCCTGCTCTTTGAGGACTAGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAAGAGAAAGCATCCT
ACTCGTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGCATCCTACTCTTTGAA
GACTGGAAAATGCCACCAACTTGTGTGGGCTTTAAGAGGCGTCCTGCTCTTTGAAGACAAAAAGG
TGCCACCAACTTGTGTGGGCTTTAAAAAGAAAAGGCA
Found at i:149434 original size:33 final size:32
Alignment explanation
Indices: 149392--149455 Score: 92
Period size: 33 Copynumber: 2.0 Consensus size: 32
149382 TACAAGCCAA
*
149392 TGTATCGATACATTTTGGGATGTATCAATACAT
1 TGTATCGATACATCTTGGG-TGTATCAATACAT
* *
149425 TGTATCGATACATCTTGTGTGTATCGATACA
1 TGTATCGATACATCTTGGGTGTATCAATACA
149456 AACAGTTAAG
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
32 11 0.39
33 17 0.61
ACGTcount: A:0.28, C:0.14, G:0.19, T:0.39
Consensus pattern (32 bp):
TGTATCGATACATCTTGGGTGTATCAATACAT
Found at i:149544 original size:20 final size:21
Alignment explanation
Indices: 149497--149548 Score: 63
Period size: 21 Copynumber: 2.5 Consensus size: 21
149487 GCCAATGACC
*
149497 TGTATCGATACATTCTTTACA
1 TGTATCGATACATTCTGTACA
*
149518 AGTATCGATACATT-TGGT-CA
1 TGTATCGATACATTCT-GTACA
149538 TGTATCGATAC
1 TGTATCGATAC
149549 TGTGCAATCT
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
20 13 0.48
21 14 0.52
ACGTcount: A:0.29, C:0.17, G:0.15, T:0.38
Consensus pattern (21 bp):
TGTATCGATACATTCTGTACA
Found at i:152700 original size:33 final size:32
Alignment explanation
Indices: 152658--152721 Score: 92
Period size: 33 Copynumber: 2.0 Consensus size: 32
152648 TACAAGCCAA
*
152658 TGTATCGATACATTTTGGGATGTATCCATACAT
1 TGTATCGATACATCTTGGG-TGTATCCATACAT
* *
152691 TGTATCGATACATCTTGTGTGTATCGATACA
1 TGTATCGATACATCTTGGGTGTATCCATACA
152722 AACAGTTAAG
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
32 11 0.39
33 17 0.61
ACGTcount: A:0.27, C:0.16, G:0.19, T:0.39
Consensus pattern (32 bp):
TGTATCGATACATCTTGGGTGTATCCATACAT
Found at i:152810 original size:20 final size:21
Alignment explanation
Indices: 152763--152814 Score: 63
Period size: 21 Copynumber: 2.5 Consensus size: 21
152753 GCCAATGACC
*
152763 TGTATCGATACATTCTTTACA
1 TGTATCGATACATTCTGTACA
*
152784 AGTATCGATACATT-TGGT-CA
1 TGTATCGATACATTCT-GTACA
152804 TGTATCGATAC
1 TGTATCGATAC
152815 TGTACAATCT
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
20 13 0.48
21 14 0.52
ACGTcount: A:0.29, C:0.17, G:0.15, T:0.38
Consensus pattern (21 bp):
TGTATCGATACATTCTGTACA
Found at i:153881 original size:1 final size:1
Alignment explanation
Indices: 153875--153953 Score: 59
Period size: 1 Copynumber: 79.0 Consensus size: 1
153865 TAGATTCTTC
* * * * * * * ** *
153875 TTTTTTTTTTCTTTTTGTTCTTTGTTTTGTTTTTTTTTTGTTTTTTTGTTTTTTTGGTTGTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
*
153940 TTCTTTTTTTTTTT
1 TTTTTTTTTTTTTT
153954 AAAAAGAATG
Statistics
Matches: 58, Mismatches: 20, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
1 58 1.00
ACGTcount: A:0.00, C:0.04, G:0.10, T:0.86
Consensus pattern (1 bp):
T
Found at i:153897 original size:20 final size:20
Alignment explanation
Indices: 153872--153950 Score: 90
Period size: 20 Copynumber: 4.0 Consensus size: 20
153862 AAGTAGATTC
153872 TTCTTTTTTT-TTTCTTTTTG
1 TTCTTTTTTTGTTT-TTTTTG
153892 TTCTTTGTTTTGTTTTTTTT-
1 TTCTTT-TTTTGTTTTTTTTG
* *
153912 TTGTTTTTTTGTTTTTTTGG
1 TTCTTTTTTTGTTTTTTTTG
* *
153932 TTGTTTTTTTCTTTTTTTT
1 TTCTTTTTTTGTTTTTTTT
153951 TTTAAAAAGA
Statistics
Matches: 52, Mismatches: 4, Indels: 6
0.84 0.06 0.10
Matches are distributed among these distances:
19 12 0.23
20 28 0.54
21 9 0.17
22 3 0.06
ACGTcount: A:0.00, C:0.05, G:0.10, T:0.85
Consensus pattern (20 bp):
TTCTTTTTTTGTTTTTTTTG
Done.