Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold176
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 960511
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 25 characters in sequence are not A, C, G, or T
File 5 of 6
Found at i:672330 original size:33 final size:33
Alignment explanation
Indices: 672288--672356 Score: 95
Period size: 33 Copynumber: 2.1 Consensus size: 33
672278 CTATTAGAAG
* *
672288 CAATGTATCGATAGAAT-TCATCATGTATCGATA
1 CAATGTATCGATACAATGT-ACCATGTATCGATA
*
672321 CAATGTATCGCTACAATGTACCATGTATCGATA
1 CAATGTATCGATACAATGTACCATGTATCGATA
672354 CAA
1 CAA
672357 ACAGTGGTAG
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
33 31 0.97
34 1 0.03
ACGTcount: A:0.36, C:0.19, G:0.14, T:0.30
Consensus pattern (33 bp):
CAATGTATCGATACAATGTACCATGTATCGATA
Found at i:672429 original size:19 final size:19
Alignment explanation
Indices: 672385--672440 Score: 67
Period size: 19 Copynumber: 2.9 Consensus size: 19
672375 CTGCCAGTTT
**
672385 CATGTATTGATACAATTGTC
1 CATGTATTGATACAA-TGAA
*
672405 CATGTATCGATACAATGAA
1 CATGTATTGATACAATGAA
*
672424 CATGTATTAATACAATG
1 CATGTATTGATACAATG
672441 TATCGATACA
Statistics
Matches: 31, Mismatches: 5, Indels: 1
0.84 0.14 0.03
Matches are distributed among these distances:
19 17 0.55
20 14 0.45
ACGTcount: A:0.38, C:0.14, G:0.14, T:0.34
Consensus pattern (19 bp):
CATGTATTGATACAATGAA
Found at i:675507 original size:3 final size:3
Alignment explanation
Indices: 675499--675545 Score: 94
Period size: 3 Copynumber: 15.7 Consensus size: 3
675489 GGATATACCC
675499 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
675546 TTCAAAAAAG
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 44 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:678858 original size:494 final size:494
Alignment explanation
Indices: 677926--678910 Score: 1790
Period size: 494 Copynumber: 2.0 Consensus size: 494
677916 AGTAAAAATG
*
677926 AAAACTCCTAGTTTTTATGGAAAAAATGATGTTGAAGCATACTTAGAAGGGTAATTGAAGATAGA
1 AAAACTCCTAGTTTTTATGGAAAAAATGATGTTGAAGCATACTTAGAAGGGTAATTAAAGATAGA
* *
677991 GCAAGTATTCGCATGCCATTATTATAGTGAGGAAAAGAATGTGAAGGTGGTTTCTTTAGAGTTCC
66 GCAAGTATTCGCATGCCATTATTACAGTGAGGAAAAGAATGTGAAGGTGGCTTCTTTAGAGTTCC
* *
678056 ATGATTATGCCTTGGTGTGGTGGGATTAAGTTCAAAAAGAGAGAAGAAGGTTTGATGAGCAGCCC
131 ATGATTATGCCTTAGTGTGGTGGGATCAAGTTCAAAAAGAGAGAAGAAGGTTTGATGAGCAGCCC
*
678121 GTAGCCACATGGGTTGAAATGAAGAACCTAATGCGCAGAAGATTTGTTCTTACCTACTATAATAG
196 GTAGCCACATGGGTTGAAATGAAGAACCTAATGCACAGAAGATTTGTTCTTACCTACTATAATAG
*
678186 GGAGCTTCAAGCAAAGCTTTAAGGTTTGAGGCAAGGTGGAAAAAGTGTCGATGACTATTACAAAG
261 GGAGCTTCAAGCAAAGCTTCAAGGTTTGAGGCAAGGTGGAAAAAGTGTCGATGACTATTACAAAG
678251 AAATGGAAGTTACCATGATAAGAGCTAATGTAATTGAAGAAAGAGAAGCAACAATGGCCCGTTTC
326 AAATGGAAGTTACCATGATAAGAGCTAATGTAATTGAAGAAAGAGAAGCAACAATGGCCCGTTTC
*
678316 TTGATTGGGCTGAACCATTATATTCGTGACATAGTGGAACTCCAACCCTATGTAGAACTTGAAGA
391 TTGAATGGGCTGAACCATTATATTCGTGACATAGTGGAACTCCAACCCTATGTAGAACTTGAAGA
* *
678381 TTTTGTTCACCAAGCTATCAAAGTAGAAGCCCAACTGTA
456 TTTGGTTCACCAAGCTATCAAAGTAAAAGCCCAACTGTA
* * *
678420 AAAATTCCTAGTTTTTATGGAATAAATGATGTTGAAGCATACTTAGAGGGGTAATTAAAGATAGA
1 AAAACTCCTAGTTTTTATGGAAAAAATGATGTTGAAGCATACTTAGAAGGGTAATTAAAGATAGA
*
678485 GCAAGTATTCTCATGCCATTATTACAGTGAGGAAAAGAATGTGAAGGTGGCTTCTTTAGAGTTCC
66 GCAAGTATTCGCATGCCATTATTACAGTGAGGAAAAGAATGTGAAGGTGGCTTCTTTAGAGTTCC
*
678550 ATGATTATGCCTTAGTGTGGTGGGATCAAGTTCAAAAAGAGAGAAGAAGGTTTGATGAGTAGCCC
131 ATGATTATGCCTTAGTGTGGTGGGATCAAGTTCAAAAAGAGAGAAGAAGGTTTGATGAGCAGCCC
*
678615 GTAGCCACATGGGTTGAAATGAAGAACCTAATGCATAGAAGATTTGTTCTTACCTACTATAATAG
196 GTAGCCACATGGGTTGAAATGAAGAACCTAATGCACAGAAGATTTGTTCTTACCTACTATAATAG
*
678680 GGAGCTTCATGCAAAGCTTCAAGGTTTGAGGCAAGGTGGAAAAAGTGTCGATGACTATTACAAAG
261 GGAGCTTCAAGCAAAGCTTCAAGGTTTGAGGCAAGGTGGAAAAAGTGTCGATGACTATTACAAAG
* *
678745 AAATGGAAGTTGCCATGATAAGAGCTAATGTAATTGAAGAAAGAGAAGCAACAATGGCCTGTTTC
326 AAATGGAAGTTACCATGATAAGAGCTAATGTAATTGAAGAAAGAGAAGCAACAATGGCCCGTTTC
*
678810 TTGAATGGGTTGAACCATTATATTCGTGACATAGTGGAACTCCAACCCTATGTAGAACTTGAAGA
391 TTGAATGGGCTGAACCATTATATTCGTGACATAGTGGAACTCCAACCCTATGTAGAACTTGAAGA
678875 TTTGGTTCACCAAGCTATCAAAGTAAAAGCCCAACT
456 TTTGGTTCACCAAGCTATCAAAGTAAAAGCCCAACT
678911 CAAAAGAAAG
Statistics
Matches: 471, Mismatches: 20, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
494 471 1.00
ACGTcount: A:0.35, C:0.14, G:0.24, T:0.27
Consensus pattern (494 bp):
AAAACTCCTAGTTTTTATGGAAAAAATGATGTTGAAGCATACTTAGAAGGGTAATTAAAGATAGA
GCAAGTATTCGCATGCCATTATTACAGTGAGGAAAAGAATGTGAAGGTGGCTTCTTTAGAGTTCC
ATGATTATGCCTTAGTGTGGTGGGATCAAGTTCAAAAAGAGAGAAGAAGGTTTGATGAGCAGCCC
GTAGCCACATGGGTTGAAATGAAGAACCTAATGCACAGAAGATTTGTTCTTACCTACTATAATAG
GGAGCTTCAAGCAAAGCTTCAAGGTTTGAGGCAAGGTGGAAAAAGTGTCGATGACTATTACAAAG
AAATGGAAGTTACCATGATAAGAGCTAATGTAATTGAAGAAAGAGAAGCAACAATGGCCCGTTTC
TTGAATGGGCTGAACCATTATATTCGTGACATAGTGGAACTCCAACCCTATGTAGAACTTGAAGA
TTTGGTTCACCAAGCTATCAAAGTAAAAGCCCAACTGTA
Found at i:688618 original size:28 final size:28
Alignment explanation
Indices: 688548--688618 Score: 76
Period size: 28 Copynumber: 2.6 Consensus size: 28
688538 ATTAATAAAT
* *
688548 AAGAAAGATC-AA-GAAAGTGAATTAAC
1 AAGAAATATCAAAGGAAAGTGAAATAAC
* *
688574 AAGAAATATGAAGGGAAA-TGAAATAAGC
1 AAGAAATATCAAAGGAAAGTGAAATAA-C
688602 AAGAAATATCAAAGGAA
1 AAGAAATATCAAAGGAA
688619 GAGAAATCAA
Statistics
Matches: 36, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
26 8 0.22
27 8 0.22
28 20 0.56
ACGTcount: A:0.59, C:0.06, G:0.21, T:0.14
Consensus pattern (28 bp):
AAGAAATATCAAAGGAAAGTGAAATAAC
Found at i:689343 original size:81 final size:80
Alignment explanation
Indices: 689227--689380 Score: 238
Period size: 81 Copynumber: 1.9 Consensus size: 80
689217 CTAAACAAGG
* * * *
689227 ACAATCCTATCCAATAAGGAAAAGTCTATTCCTTATCCTAATCTAATTAGGACTTATCTAAACAA
1 ACAATCCTATCCAATAAAGAAAAGTCTACTCCTTATCATAATCTAATTAGGAATTATCTAAACAA
*
689292 CTTAAAATCCTAAAC
66 ATTAAAATCCTAAAC
689307 ACAATCCTAAT-CAATAAAGATAAAGTCTACTCCTTATCATAATCTAATTAGGAATTATCTAAAC
1 ACAATCCT-ATCCAATAAAGA-AAAGTCTACTCCTTATCATAATCTAATTAGGAATTATCTAAAC
689371 AAATTAAAAT
64 AAATTAAAAT
689381 TGAAAAGTCA
Statistics
Matches: 67, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
80 16 0.24
81 51 0.76
ACGTcount: A:0.44, C:0.19, G:0.06, T:0.31
Consensus pattern (80 bp):
ACAATCCTATCCAATAAAGAAAAGTCTACTCCTTATCATAATCTAATTAGGAATTATCTAAACAA
ATTAAAATCCTAAAC
Found at i:689497 original size:29 final size:29
Alignment explanation
Indices: 689455--689522 Score: 84
Period size: 29 Copynumber: 2.3 Consensus size: 29
689445 TATAACTAAC
* *
689455 TTGGGCTCCATTCTTTTTGGACATGTAAA
1 TTGGGCTCCATTCTTCTTGGACATGCAAA
*
689484 TTGGGCAT-CATTCTTCTTGGTCATGCAAA
1 TTGGGC-TCCATTCTTCTTGGACATGCAAA
*
689513 TTAGGCTCCA
1 TTGGGCTCCA
689523 AGCTTCATTC
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
28 1 0.03
29 31 0.94
30 1 0.03
ACGTcount: A:0.21, C:0.21, G:0.21, T:0.38
Consensus pattern (29 bp):
TTGGGCTCCATTCTTCTTGGACATGCAAA
Found at i:696939 original size:79 final size:79
Alignment explanation
Indices: 696772--697714 Score: 1125
Period size: 79 Copynumber: 12.0 Consensus size: 79
696762 ATTCATGTTT
*
696772 TTATTTTCGAGGGGATACTCCAACCCCGGTTTTATTTCCAAAACACCAA-TTTTCACAATCGGGG
1 TTATTTTCGAGGGGATACTCCAACCCCGATTTTATTTCCAAAACACCAATTTTTCACAATCGGGG
696836 ATACTCCAA-CCTCG
66 ATACTCCAACCCT-G
* * * ** *
696850 TTATTTTCGAAGGGATACTCCAACCTCGGTTTTATTTTTAAAACACTAATTTTTCACAATCGGGG
1 TTATTTTCGAGGGGATACTCCAACCCCGATTTTATTTCCAAAACACCAATTTTTCACAATCGGGG
696915 ATACTCCAACCCTG
66 ATACTCCAACCCTG
* * * *
696929 TTATTTTCGAAGGGATACTCCAACCCCGGTTTTATTTCCAAAATACCAATTTTTCACAATAGGGG
1 TTATTTTCGAGGGGATACTCCAACCCCGATTTTATTTCCAAAACACCAATTTTTCACAATCGGGG
*
696994 ATACTCC-ACCCCG
66 ATACTCCAACCCTG
* * * **
697007 TT-TTTTACGAGGGGATACTCCAACCCCGATTTTATTTTCAAAACACTAATTTTTCATAATTAGG
1 TTATTTT-CGAGGGGATACTCCAACCCCGATTTTATTTCCAAAACACCAATTTTTCACAATCGGG
*
697071 GATACTCCAACCCCG
65 GATACTCCAACCCTG
* *
697086 TTA-TTTCTGAGGGGATACTCCAACCCCGATTTTATTTCCAAAACACCAATTTTTTACAATCAGG
1 TTATTTTC-GAGGGGATACTCCAACCCCGATTTTATTTCCAAAACACCAATTTTTCACAATCGGG
*
697150 GATACTCCAACCCTA
65 GATACTCCAACCCTG
* * ** * *
697165 TTA-TTTCTGAGGAGATACTTCAACCATGATTTTATTTTCAAAACACCAATTTTCCACAATCGGG
1 TTATTTTC-GAGGGGATACTCCAACCCCGATTTTATTTCCAAAACACCAATTTTTCACAATCGGG
* *
697229 GATACTCTAACTCC-A
65 GATACTCCAAC-CCTG
* * * ** *
697244 TTATTTTTGAGGGGATACTCCAACCTCGGTTTTATTTTTAAAACACTAATTTTTCACAATCGGGG
1 TTATTTTCGAGGGGATACTCCAACCCCGATTTTATTTCCAAAACACCAATTTTTCACAATCGGGG
697309 ATACTCCAACCCTG
66 ATACTCCAACCCTG
*
697323 TTATTTTCGAGGGGATACTCCAACCCCGATTTTATTTCCAAAACACCAATTTTTCACAAT-GAAG
1 TTATTTTCGAGGGGATACTCCAACCCCGATTTTATTTCCAAAACACCAATTTTTCACAATCG-GG
*
697387 GATACTCC-ACCCCG
65 GATACTCCAACCCTG
* * * * * **
697401 TTTTTTTTGAGGGGATACTCCAACCCCAATTTTATTTCCAAAACACTAATTTTTCACAGTTAGGG
1 TTATTTTCGAGGGGATACTCCAACCCCGATTTTATTTCCAAAACACCAATTTTTCACAATCGGGG
697466 ATACTCCAA-CCTCG
66 ATACTCCAACCCT-G
* * * *
697480 TTATTTCCGAGGGGATACTCCAACCCTGGTTTTATTTCCAAAACACCAATTTTTCACAATCAGGG
1 TTATTTTCGAGGGGATACTCCAACCCCGATTTTATTTCCAAAACACCAATTTTTCACAATCGGGG
697545 ATACTCCAACCCTG
66 ATACTCCAACCCTG
* * * * * * *
697559 TTA-TTTCTGAAGAGATACTTCAACCCTGATTTTATTTTCAAAACACCAATTTTCCACAATCAGG
1 TTATTTTC-GAGGGGATACTCCAACCCCGATTTTATTTCCAAAACACCAATTTTTCACAATCGGG
* **
697623 GATACTCTAACCCCA
65 GATACTCCAACCCTG
* * * * * * * * *
697638 TTATTTCCGAGGGGATACTCCAACCCTGATTTTTTTTCCAAAATATCGATTTTCCACCATTGGGG
1 TTATTTTCGAGGGGATACTCCAACCCCGATTTTATTTCCAAAACACCAATTTTTCACAATCGGGG
*
697703 ATGCTCCAACCC
66 ATACTCCAACCC
697715 CATTATTTCT
Statistics
Matches: 753, Mismatches: 96, Indels: 31
0.86 0.11 0.04
Matches are distributed among these distances:
77 4 0.01
78 186 0.25
79 549 0.73
80 14 0.02
ACGTcount: A:0.29, C:0.25, G:0.13, T:0.33
Consensus pattern (79 bp):
TTATTTTCGAGGGGATACTCCAACCCCGATTTTATTTCCAAAACACCAATTTTTCACAATCGGGG
ATACTCCAACCCTG
Found at i:697040 original size:27 final size:27
Alignment explanation
Indices: 696989--697040 Score: 79
Period size: 27 Copynumber: 1.9 Consensus size: 27
696979 TTTTCACAAT
*
696989 AGGGGATACTCCACCCCGTTTTTTACG
1 AGGGGATACTCCACCCCGTATTTTACG
697016 AGGGGATACTCCAACCCCG-ATTTTA
1 AGGGGATACTCC-ACCCCGTATTTTA
697041 TTTTCAAAAC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
27 17 0.74
28 6 0.26
ACGTcount: A:0.23, C:0.29, G:0.21, T:0.27
Consensus pattern (27 bp):
AGGGGATACTCCACCCCGTATTTTACG
Found at i:697311 original size:315 final size:311
Alignment explanation
Indices: 696776--697735 Score: 1227
Period size: 315 Copynumber: 3.1 Consensus size: 311
696766 ATGTTTTTAT
* *
696776 TTTC-GAGGGGATACTCCAACCCCGGTTTTATTTCCAAAACACCAA-TTTTCACAATCGGGGATA
1 TTTCTGAGGGGATACTCCAACCCCGATTTTATTTCCAAAACACCAATTTTTCACAATCAGGGATA
* *
696839 CTCCAACCTCGTTATTT-TCGAAGGGATACTCCAACCTCGGTTTTATTTTTAAAACACTAATTTT
66 CTCCAACCTCGTTATTTCT-G-AGGGATACTCCAACCT-GGTTTTATTTTCAAAACACCAATTTT
* *
696903 TCACAATCGGGGATACTCCAACCCTGTTATTTTCGAAGGGATACTCCAACCCCGGTTTTATTTCC
128 TCACAATCGGGGATACTCCAACCCTGTTATTTTTGAAGGGATACTCCAA-CCCGGTTTTATTTTC
* *
696968 AAAATACCAATTTTTCACAATAGGGGATACTCCACCCCGTTTTTTACGAGGGGATACTCCAACCC
192 AAAACACCAATTTTTCACAATCGGGGATACTCCACCCCGTTTTTT-CGAGGGGATACTCCAACCC
*
697033 CGATTTTATTTTCAAAACACTAATTTTTCATAATTAGGGATACTCCAACCCCGTTA
256 CGATTTTATTTTCAAAACACTAATTTTTCACAATTAGGGATACTCCAACCCCGTTA
*
697089 TTTCTGAGGGGATACTCCAACCCCGATTTTATTTCCAAAACACCAATTTTTTACAATCAGGGATA
1 TTTCTGAGGGGATACTCCAACCCCGATTTTATTTCCAAAACACCAATTTTTCACAATCAGGGATA
* * *
697154 CTCCAACC-CTATTATTTCTGAGGAGATACTTCAACCATGATTTTATTTTCAAAACACCAATTTT
66 CTCCAACCTC-GTTATTTCTGAGG-GATACTCCAACC-TGGTTTTATTTTCAAAACACCAATTTT
* * * *
697218 CCACAATCGGGGATACTCTAACTCC-ATTATTTTTGAGGGGATACTCCAACCTCGGTTTTATTTT
128 TCACAATCGGGGATACTCCAAC-CCTGTTATTTTTGAAGGGATACTCCAACC-CGGTTTTATTTT
* * *
697282 TAAAACACTAATTTTTCACAATCGGGGATACTCCAACCCTGTTATTTTCGAGGGGATACTCCAAC
191 CAAAACACCAATTTTTCACAATCGGGGATACTCC-ACCCCGTT-TTTTCGAGGGGATACTCCAAC
* * * * *
697347 CCCGATTTTATTTCCAAAACACCAATTTTTCACAATGAAGGATACTCC-ACCCCGTTT
254 CCCGATTTTATTTTCAAAACACTAATTTTTCACAATTAGGGATACTCCAACCCCGTTA
* * * * *
697404 TTTTTGAGGGGATACTCCAACCCCAATTTTATTTCCAAAACACTAATTTTTCACAGTTAGGGATA
1 TTTCTGAGGGGATACTCCAACCCCGATTTTATTTCCAAAACACCAATTTTTCACAATCAGGGATA
* *
697469 CTCCAACCTCGTTATTTCCGAGGGGATACTCCAACCCTGGTTTTATTTCCAAAACACCAATTTTT
66 CTCCAACCTCGTTATTTCTGA-GGGATACTCCAA-CCTGGTTTTATTTTCAAAACACCAATTTTT
* * * * *
697534 CACAATCAGGGATACTCCAACCCTGTTATTTCTGAAGAGATACTTCAACCCTGATTTTATTTTCA
129 CACAATCGGGGATACTCCAACCCTGTTATTTTTGAAGGGATACTCCAACCC-GGTTTTATTTTCA
* * * * *
697599 AAACACCAATTTTCCACAATCAGGGATACTCTAACCCCATTATTTCCGAGGGGATACTCCAACCC
193 AAACACCAATTTTTCACAATCGGGGATACTC-CACCCCGTT-TTTTCGAGGGGATACTCCAACCC
* * * * * * * *
697664 TGATTTT-TTTTCCAAAATA-TCGATTTTCCACCATTGGGGATGCTCCAACCCCATTA
256 CGATTTTATTTT-CAAAACACT-AATTTTTCACAATTAGGGATACTCCAACCCCGTTA
697720 TTTCTGAAGGGG-TACT
1 TTTCTG-AGGGGATACT
697736 TCGACCCTAT
Statistics
Matches: 560, Mismatches: 67, Indels: 37
0.84 0.10 0.06
Matches are distributed among these distances:
313 4 0.01
314 52 0.09
315 403 0.72
316 92 0.16
317 9 0.02
ACGTcount: A:0.28, C:0.25, G:0.13, T:0.33
Consensus pattern (311 bp):
TTTCTGAGGGGATACTCCAACCCCGATTTTATTTCCAAAACACCAATTTTTCACAATCAGGGATA
CTCCAACCTCGTTATTTCTGAGGGATACTCCAACCTGGTTTTATTTTCAAAACACCAATTTTTCA
CAATCGGGGATACTCCAACCCTGTTATTTTTGAAGGGATACTCCAACCCGGTTTTATTTTCAAAA
CACCAATTTTTCACAATCGGGGATACTCCACCCCGTTTTTTCGAGGGGATACTCCAACCCCGATT
TTATTTTCAAAACACTAATTTTTCACAATTAGGGATACTCCAACCCCGTTA
Found at i:697714 original size:394 final size:394
Alignment explanation
Indices: 696785--697662 Score: 1463
Period size: 394 Copynumber: 2.2 Consensus size: 394
696775 TTTTCGAGGG
* * * * * *
696785 GATACTCCAACCCCGGTTTTATTTCCAAAACACCAATTTT-CACAATCGGGGATACTCCAACCTC
1 GATACTTCAACCCTGATTTTATTTTCAAAACACCAATTTTCCACAATCGGGGATACTCTAACCCC
* *
696849 GTTATTTTCGAAGGGATACTCCAACCTCGGTTTTATTTTTAAAACACTAATTTTTCACAATCGGG
66 ATTATTTTCGAGGGGATACTCCAACCTCGGTTTTATTTTTAAAACACTAATTTTTCACAATCGGG
* *
696914 GATACTCCAACCCTGTTATTTTCGAAGGGATACTCCAACCCCGGTTTTATTTCCAAAATACCAAT
131 GATACTCCAACCCTGTTATTTTCGAAGGGATACTCCAACCCCGATTTTATTTCCAAAACACCAAT
* *
696979 TTTTCACAATAGGGGATACTCCACCCCGTTTTTTACGAGGGGATACTCCAACCCCGATTTTATTT
196 TTTTCACAATAGAGGATACTCCACCCCGTTTTTTACGAGGGGATACTCCAACCCCAATTTTATTT
* * *
697044 TCAAAACACTAATTTTTCATAATTAGGGATACTCCAACCCCGTTATTTCTGAGGGGATACTCCAA
261 CCAAAACACTAATTTTTCACAATTAGGGATACTCCAACCCCGTTATTTCCGAGGGGATACTCCAA
*
697109 CCCCGATTTTATTTCCAAAACACCAATTTTTTACAATCAGGGATACTCCAACCCTATTATTTCTG
326 CCCCGATTTTATTTCCAAAACACCAATTTTTCACAATCAGGGATACTCCAACCCTATTATTTCTG
*
697174 AGGA
391 AAGA
* *
697178 GATACTTCAACCATGATTTTATTTTCAAAACACCAATTTTCCACAATCGGGGATACTCTAACTCC
1 GATACTTCAACCCTGATTTTATTTTCAAAACACCAATTTTCCACAATCGGGGATACTCTAACCCC
*
697243 ATTATTTTTGAGGGGATACTCCAACCTCGGTTTTATTTTTAAAACACTAATTTTTCACAATCGGG
66 ATTATTTTCGAGGGGATACTCCAACCTCGGTTTTATTTTTAAAACACTAATTTTTCACAATCGGG
*
697308 GATACTCCAACCCTGTTATTTTCGAGGGGATACTCCAACCCCGATTTTATTTCCAAAACACCAAT
131 GATACTCCAACCCTGTTATTTTCGAAGGGATACTCCAACCCCGATTTTATTTCCAAAACACCAAT
**
697373 TTTTCACAAT-GAAGGATACTCCACCCCGTTTTTTTTGAGGGGATACTCCAACCCCAATTTTATT
196 TTTTCACAATAG-AGGATACTCCACCCCGTTTTTTACGAGGGGATACTCCAACCCCAATTTTATT
* *
697437 TCCAAAACACTAATTTTTCACAGTTAGGGATACTCCAACCTCGTTATTTCCGAGGGGATACTCCA
260 TCCAAAACACTAATTTTTCACAATTAGGGATACTCCAACCCCGTTATTTCCGAGGGGATACTCCA
* * *
697502 ACCCTGGTTTTATTTCCAAAACACCAATTTTTCACAATCAGGGATACTCCAACCCTGTTATTTCT
325 ACCCCGATTTTATTTCCAAAACACCAATTTTTCACAATCAGGGATACTCCAACCCTATTATTTCT
697567 GAAGA
390 GAAGA
*
697572 GATACTTCAACCCTGATTTTATTTTCAAAACACCAATTTTCCACAATCAGGGATACTCTAACCCC
1 GATACTTCAACCCTGATTTTATTTTCAAAACACCAATTTTCCACAATCGGGGATACTCTAACCCC
*
697637 ATTATTTCCGAGGGGATACTCCAACC
66 ATTATTTTCGAGGGGATACTCCAACC
697663 CTGATTTTTT
Statistics
Matches: 450, Mismatches: 33, Indels: 3
0.93 0.07 0.01
Matches are distributed among these distances:
393 36 0.08
394 414 0.92
ACGTcount: A:0.29, C:0.26, G:0.13, T:0.32
Consensus pattern (394 bp):
GATACTTCAACCCTGATTTTATTTTCAAAACACCAATTTTCCACAATCGGGGATACTCTAACCCC
ATTATTTTCGAGGGGATACTCCAACCTCGGTTTTATTTTTAAAACACTAATTTTTCACAATCGGG
GATACTCCAACCCTGTTATTTTCGAAGGGATACTCCAACCCCGATTTTATTTCCAAAACACCAAT
TTTTCACAATAGAGGATACTCCACCCCGTTTTTTACGAGGGGATACTCCAACCCCAATTTTATTT
CCAAAACACTAATTTTTCACAATTAGGGATACTCCAACCCCGTTATTTCCGAGGGGATACTCCAA
CCCCGATTTTATTTCCAAAACACCAATTTTTCACAATCAGGGATACTCCAACCCTATTATTTCTG
AAGA
Found at i:699816 original size:4 final size:4
Alignment explanation
Indices: 699807--699849 Score: 68
Period size: 4 Copynumber: 10.8 Consensus size: 4
699797 TTTTGAGGTG
* *
699807 TTTA TTTA TTTC TTTA TTCA TTTA TTTA TTTA TTTA TTTA TTT
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTT
699850 TGTTTTGTTT
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
4 35 1.00
ACGTcount: A:0.21, C:0.05, G:0.00, T:0.74
Consensus pattern (4 bp):
TTTA
Found at i:709438 original size:19 final size:18
Alignment explanation
Indices: 709392--709509 Score: 67
Period size: 19 Copynumber: 6.8 Consensus size: 18
709382 TTTCAACAAT
*
709392 TTGTATCGATACAAACTG
1 TTGTATCGATACAAAGTG
709410 TAACTGTATCGATACATAAGTG
1 T---TGTATCGATACA-AAGTG
* *
709432 TTGTATCAATTC-AA---
1 TTGTATCGATACAAAGTG
*
709446 -TATATCGATACATAAGTG
1 TTGTATCGATACA-AAGTG
709464 TTGTATCGATAC-AA---
1 TTGTATCGATACAAAGTG
*
709478 -TGTATCGATACATAAGTT
1 TTGTATCGATACA-AAGTG
709496 TTGTATCGATACAA
1 TTGTATCGATACAA
709510 TGTATCGCTA
Statistics
Matches: 77, Mismatches: 7, Indels: 32
0.66 0.06 0.28
Matches are distributed among these distances:
13 19 0.25
15 4 0.05
17 4 0.05
18 2 0.03
19 31 0.40
21 12 0.16
22 5 0.06
ACGTcount: A:0.36, C:0.14, G:0.15, T:0.36
Consensus pattern (18 bp):
TTGTATCGATACAAAGTG
Found at i:709457 original size:32 final size:32
Alignment explanation
Indices: 709414--709516 Score: 170
Period size: 32 Copynumber: 3.2 Consensus size: 32
709404 AAACTGTAAC
* *
709414 TGTATCGATACATAAGTGTTGTATCAATTCAA
1 TGTATCGATACATAAGTGTTGTATCGATACAA
*
709446 TATATCGATACATAAGTGTTGTATCGATACAA
1 TGTATCGATACATAAGTGTTGTATCGATACAA
*
709478 TGTATCGATACATAAGTTTTGTATCGATACAA
1 TGTATCGATACATAAGTGTTGTATCGATACAA
709510 TGTATCG
1 TGTATCG
709517 CTACGAAGCT
Statistics
Matches: 66, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
32 66 1.00
ACGTcount: A:0.34, C:0.13, G:0.17, T:0.37
Consensus pattern (32 bp):
TGTATCGATACATAAGTGTTGTATCGATACAA
Found at i:709483 original size:13 final size:13
Alignment explanation
Indices: 709465--709489 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
709455 ACATAAGTGT
709465 TGTATCGATACAA
1 TGTATCGATACAA
709478 TGTATCGATACA
1 TGTATCGATACA
709490 TAAGTTTTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:723311 original size:45 final size:44
Alignment explanation
Indices: 723262--723361 Score: 141
Period size: 45 Copynumber: 2.2 Consensus size: 44
723252 GGCGTCCTCC
723262 ACAAAAAAAAGAA-G-AAAAAAAACAAAACAAAAAAAAAACAAACAA
1 ACAAAAAAAAGAAGGAAAAAAAAAC-AAACAAAAAAAAAA-AAAC-A
*
723307 ACAAAAAAAAGAAGGAAAAAAAAACAAACAAACAAAAAAAAACA
1 ACAAAAAAAAGAAGGAAAAAAAAACAAACAAAAAAAAAAAAACA
*
723351 ACAACAAAAAG
1 ACAAAAAAAAG
723362 GGTCCGGATG
Statistics
Matches: 51, Mismatches: 2, Indels: 5
0.88 0.03 0.09
Matches are distributed among these distances:
44 11 0.22
45 17 0.33
46 14 0.27
47 9 0.18
ACGTcount: A:0.82, C:0.12, G:0.06, T:0.00
Consensus pattern (44 bp):
ACAAAAAAAAGAAGGAAAAAAAAACAAACAAAAAAAAAAAAACA
Found at i:723313 original size:31 final size:31
Alignment explanation
Indices: 723276--723360 Score: 107
Period size: 31 Copynumber: 2.6 Consensus size: 31
723266 AAAAAAGAAG
723276 AAAAAAAACAAAACAAAAAAAAAACAAACAAAC
1 AAAAAAAAC--AACAAAAAAAAAACAAACAAAC
* **
723309 AAAAAAAAGAAGGAAAAAAAAACAAACAAAC
1 AAAAAAAACAACAAAAAAAAAACAAACAAAC
*
723340 AAAAAAAAACAACAACAAAAA
1 -AAAAAAAACAACAAAAAAAA
723361 GGGTCCGGAT
Statistics
Matches: 44, Mismatches: 7, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
31 20 0.45
32 16 0.36
33 8 0.18
ACGTcount: A:0.84, C:0.13, G:0.04, T:0.00
Consensus pattern (31 bp):
AAAAAAAACAACAAAAAAAAAACAAACAAAC
Found at i:723360 original size:1 final size:1
Alignment explanation
Indices: 723264--723348 Score: 53
Period size: 1 Copynumber: 85.0 Consensus size: 1
723254 CGTCCTCCAC
* * * * * * * * **
723264 AAAAAAAAGAAGAAAAAAAACAAAACAAAAAAAAAACAAACAAACAAAAAAAAGAAGGAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
* * *
723329 AACAAACAAACAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAA
723349 CAACAACAAA
Statistics
Matches: 60, Mismatches: 24, Indels: 0
0.71 0.29 0.00
Matches are distributed among these distances:
1 60 1.00
ACGTcount: A:0.85, C:0.09, G:0.06, T:0.00
Consensus pattern (1 bp):
A
Found at i:724878 original size:57 final size:58
Alignment explanation
Indices: 724783--724989 Score: 314
Period size: 58 Copynumber: 3.6 Consensus size: 58
724773 CTTTCCTCAC
*
724783 CCTTCAAAAGCCCACAAGTCAGTGGCA-TCTTTTTCAAAGCCCACAAGTCAGTGGCAA
1 CCTTCAAAAGCCCACAAGTCAGTGGCACCCTTTTTCAAAGCCCACAAGTCAGTGGCAA
* *
724840 CCTTC-AAAGCCCACAAATCAGTGGCACCCTTTTCCAAAGCCCACAAGTCAGTGGCAA
1 CCTTCAAAAGCCCACAAGTCAGTGGCACCCTTTTTCAAAGCCCACAAGTCAGTGGCAA
* * *
724897 CCTTCAAAAGCCCACAAGTTAGTGGCACCCTTTTTCAAAGCCCACAAATCAGCGGCAA
1 CCTTCAAAAGCCCACAAGTCAGTGGCACCCTTTTTCAAAGCCCACAAGTCAGTGGCAA
*
724955 CCTTCAAAAGCCCACAAGTTC-GTGGCA-TCTTTTTC
1 CCTTCAAAAGCCCACAAG-TCAGTGGCACCCTTTTTC
724990 CTTTTAAGCC
Statistics
Matches: 137, Mismatches: 10, Indels: 6
0.90 0.07 0.04
Matches are distributed among these distances:
56 20 0.15
57 45 0.33
58 71 0.52
59 1 0.01
ACGTcount: A:0.30, C:0.32, G:0.16, T:0.21
Consensus pattern (58 bp):
CCTTCAAAAGCCCACAAGTCAGTGGCACCCTTTTTCAAAGCCCACAAGTCAGTGGCAA
Found at i:724880 original size:30 final size:28
Alignment explanation
Indices: 724783--724981 Score: 213
Period size: 28 Copynumber: 7.0 Consensus size: 28
724773 CTTTCCTCAC
* *
724783 CCTTCAAAAGCCCACAAGTCAGTGGCAT
1 CCTTCCAAAGCCCACAAGTCAGTGGCAA
* *
724811 CTTTTTCAAAGCCCACAAGTCAGTGGCAA
1 C-CTTCCAAAGCCCACAAGTCAGTGGCAA
* *
724840 CCTT-CAAAGCCCACAAATCAGTGGCAC
1 CCTTCCAAAGCCCACAAGTCAGTGGCAA
724867 CCTTTTCCAAAGCCCACAAGTCAGTGGCAA
1 CC--TTCCAAAGCCCACAAGTCAGTGGCAA
* * *
724897 CCTTCAAAAGCCCACAAGTTAGTGGCAC
1 CCTTCCAAAGCCCACAAGTCAGTGGCAA
* * *
724925 CCTTTTTCAAAGCCCACAAATCAGCGGCAA
1 CC--TTCCAAAGCCCACAAGTCAGTGGCAA
*
724955 CCTTCAAAAGCCCACAAGTTC-GTGGCA
1 CCTTCCAAAGCCCACAAG-TCAGTGGCA
724982 TCTTTTTCCT
Statistics
Matches: 142, Mismatches: 22, Indels: 14
0.80 0.12 0.08
Matches are distributed among these distances:
27 23 0.16
28 46 0.32
29 28 0.20
30 45 0.32
ACGTcount: A:0.32, C:0.33, G:0.17, T:0.19
Consensus pattern (28 bp):
CCTTCCAAAGCCCACAAGTCAGTGGCAA
Found at i:724893 original size:86 final size:86
Alignment explanation
Indices: 724783--724989 Score: 271
Period size: 86 Copynumber: 2.4 Consensus size: 86
724773 CTTTCCTCAC
724783 CCTTCAAAAGCCCACAAGTCAGTGGCATCTTTTTC-AAAGCCCACAAGTCAGTGGCAACC-TTCA
1 CCTTCAAAAGCCCACAAGTCAGTGGCATCTTTTTCAAAAGCCCACAAGTCAGTGGCAACCTTTCA
* *
724846 AAGCCCACAAATCAGTGGCAC
66 AAGCCCACAAATCAGCGGCAA
* * * * *
724867 CCTTTTCCAAAGCCCACAAGTCAGTGGCAAC--CTTCAAAAGCCCACAAGTTAGTGGCACCCTTT
1 CC--TTCAAAAGCCCACAAGTCAGTGGCATCTTTTTCAAAAGCCCACAAGTCAGTGGCAACC--T
724930 TTCAAAGCCCACAAATCAGCGGCAA
62 TTCAAAGCCCACAAATCAGCGGCAA
724955 CCTTCAAAAGCCCACAAGTTC-GTGGCATCTTTTTC
1 CCTTCAAAAGCCCACAAG-TCAGTGGCATCTTTTTC
724990 CTTTTAAGCC
Statistics
Matches: 104, Mismatches: 10, Indels: 14
0.81 0.08 0.11
Matches are distributed among these distances:
84 5 0.05
85 22 0.21
86 47 0.45
87 2 0.02
88 28 0.27
ACGTcount: A:0.30, C:0.32, G:0.16, T:0.21
Consensus pattern (86 bp):
CCTTCAAAAGCCCACAAGTCAGTGGCATCTTTTTCAAAAGCCCACAAGTCAGTGGCAACCTTTCA
AAGCCCACAAATCAGCGGCAA
Found at i:725020 original size:33 final size:33
Alignment explanation
Indices: 724962--725051 Score: 103
Period size: 32 Copynumber: 2.8 Consensus size: 33
724952 CAACCTTCAA
* * *
724962 AAGCCCACAAGTTCGTGGCATCTTTTTCCT-TTT
1 AAGCCCACAACTCCGTGGCACCTTTTT-CTATTT
*
724995 AAGCCCACAACTCCGTGGCGCC-TTTTCTATTT
1 AAGCCCACAACTCCGTGGCACCTTTTTCTATTT
* *
725027 AAGTCCACAACTCTGTGGCACCTTT
1 AAGCCCACAACTCCGTGGCACCTTT
725052 AAGCCCAATA
Statistics
Matches: 48, Mismatches: 7, Indels: 4
0.81 0.12 0.07
Matches are distributed among these distances:
31 2 0.04
32 26 0.54
33 20 0.42
ACGTcount: A:0.20, C:0.31, G:0.16, T:0.33
Consensus pattern (33 bp):
AAGCCCACAACTCCGTGGCACCTTTTTCTATTT
Found at i:725131 original size:35 final size:34
Alignment explanation
Indices: 725085--725199 Score: 117
Period size: 35 Copynumber: 3.4 Consensus size: 34
725075 GTCAGCATAT
* * * * *
725085 TGGCAC-CTTTTCTTTTTTCAGTCTACAACTTCG
1 TGGCACTCTTTTCTTTTGTAAGCCCACAACTCCG
725118 TGGCACTTCTTTTCTTTTGTAAGCCCACAACTCCG
1 TGGCAC-TCTTTTCTTTTGTAAGCCCACAACTCCG
* * *
725153 TGGCACTCTTTTTCCTTT-TAAGCCCACAAGTCAG
1 TGGCACTC-TTTTCTTTTGTAAGCCCACAACTCCG
*
725187 TGGCACCCTTTTC
1 TGGCACTCTTTTC
725200 AAAAGCCCAC
Statistics
Matches: 70, Mismatches: 9, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
33 11 0.16
34 23 0.33
35 36 0.51
ACGTcount: A:0.17, C:0.30, G:0.14, T:0.39
Consensus pattern (34 bp):
TGGCACTCTTTTCTTTTGTAAGCCCACAACTCCG
Found at i:725175 original size:34 final size:35
Alignment explanation
Indices: 725109--725198 Score: 112
Period size: 34 Copynumber: 2.6 Consensus size: 35
725099 TTTTCAGTCT
* *
725109 ACAACTTCGTGGCACT-TCTTTTCTTTTGTAAGCCC
1 ACAACTCCGTGGCACTCT-TTTTCCTTTGTAAGCCC
725144 ACAACTCCGTGGCACTCTTTTTCCTTT-TAAGCCC
1 ACAACTCCGTGGCACTCTTTTTCCTTTGTAAGCCC
* * *
725178 ACAAGTCAGTGGCACCCTTTT
1 ACAACTCCGTGGCACTCTTTT
725199 CAAAAGCCCA
Statistics
Matches: 49, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
34 25 0.51
35 23 0.47
36 1 0.02
ACGTcount: A:0.19, C:0.31, G:0.14, T:0.36
Consensus pattern (35 bp):
ACAACTCCGTGGCACTCTTTTTCCTTTGTAAGCCC
Found at i:725238 original size:28 final size:29
Alignment explanation
Indices: 725172--725241 Score: 106
Period size: 30 Copynumber: 2.4 Consensus size: 29
725162 TTTTCCTTTT
*
725172 AAGCCCACAAGTCAGTGGCACCCTTTTCAA
1 AAGCCCACAAGTCAGTGGCAACC-TTTCAA
725202 AAGCCCACAAGTCAGTGGCAACC-TTCAA
1 AAGCCCACAAGTCAGTGGCAACCTTTCAA
*
725230 AAGCACACAAGT
1 AAGCCCACAAGT
725242 TGGTGGCGTC
Statistics
Matches: 38, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
28 16 0.42
30 22 0.58
ACGTcount: A:0.36, C:0.31, G:0.17, T:0.16
Consensus pattern (29 bp):
AAGCCCACAAGTCAGTGGCAACCTTTCAA
Found at i:725477 original size:52 final size:49
Alignment explanation
Indices: 725263--725496 Score: 254
Period size: 49 Copynumber: 4.7 Consensus size: 49
725253 TCTTCTAAGT
* * * * * *
725263 CCAATATCGCTGGCCTTGAATTAGCATATTGGTACCTTTATCTTTAAGA
1 CCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAAA
* **
725312 CCAATG-CTGCTGGCCTTGAATCAGCACATTGGCATCTTCATCTTTAAGT
1 CCAATGTC-GCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAAA
** *
725361 CCAATGTCTTTGGCCTAGAATCAGCACATTGGCACCTTCATCTTTAAAGA
1 CCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAA-A
* * * * *
725411 TCAGTATCGCTGGCCTTGAATCAGCATATTGGCGCCTCGTCATCTTTAAAA
1 CCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCT--TCATCTTTAAAA
*
725462 CCCAATGTCGTTGGCCTTGAATCAGCACATTGGCA
1 -CCAATGTCGCTGGCCTTGAATCAGCACATTGGCA
725497 TTCTTCTCAT
Statistics
Matches: 152, Mismatches: 27, Indels: 9
0.81 0.14 0.05
Matches are distributed among these distances:
48 1 0.01
49 81 0.53
50 30 0.20
51 1 0.01
52 39 0.26
ACGTcount: A:0.25, C:0.25, G:0.18, T:0.32
Consensus pattern (49 bp):
CCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAAA
Found at i:726229 original size:19 final size:18
Alignment explanation
Indices: 726185--726277 Score: 88
Period size: 19 Copynumber: 5.2 Consensus size: 18
726175 TTTCAACAAT
726185 TTGTATCGATACAAACTGTAA
1 TTGTATCGATACAAA--GT-A
726206 TTGTATCGATACATAAGTA
1 TTGTATCGATACA-AAGTA
726225 TTGTATCGATAC--A--A
1 TTGTATCGATACAAAGTA
*
726239 -TGTATCGATACATAAGTT
1 TTGTATCGATACA-AAGTA
*
726257 TTGTATCGATACAATGTA
1 TTGTATCGATACAAAGTA
726275 TTG
1 TTG
726278 CTATGAAGCT
Statistics
Matches: 62, Mismatches: 3, Indels: 17
0.76 0.04 0.21
Matches are distributed among these distances:
13 11 0.18
14 1 0.02
16 2 0.03
18 6 0.10
19 25 0.40
20 2 0.03
21 13 0.21
22 2 0.03
ACGTcount: A:0.34, C:0.12, G:0.16, T:0.38
Consensus pattern (18 bp):
TTGTATCGATACAAAGTA
Found at i:726244 original size:13 final size:13
Alignment explanation
Indices: 726226--726250 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
726216 ACATAAGTAT
726226 TGTATCGATACAA
1 TGTATCGATACAA
726239 TGTATCGATACA
1 TGTATCGATACA
726251 TAAGTTTTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:726248 original size:32 final size:32
Alignment explanation
Indices: 726207--726275 Score: 129
Period size: 32 Copynumber: 2.2 Consensus size: 32
726197 AAACTGTAAT
726207 TGTATCGATACATAAGTATTGTATCGATACAA
1 TGTATCGATACATAAGTATTGTATCGATACAA
*
726239 TGTATCGATACATAAGTTTTGTATCGATACAA
1 TGTATCGATACATAAGTATTGTATCGATACAA
726271 TGTAT
1 TGTAT
726276 TGCTATGAAG
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 36 1.00
ACGTcount: A:0.35, C:0.12, G:0.16, T:0.38
Consensus pattern (32 bp):
TGTATCGATACATAAGTATTGTATCGATACAA
Found at i:730762 original size:61 final size:60
Alignment explanation
Indices: 730660--731163 Score: 482
Period size: 61 Copynumber: 8.3 Consensus size: 60
730650 TTATCTTTTC
* * * *
730660 AGTCCTTAAAGAGCAAGACACTTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACCTTCT
1 AGTCCTCAAAGAGCAGGACGC-CTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACCTTCT
* * * * * ** *
730721 GGTCCCCAAAGAGCAGGATGCCTTTCCTTTTTAAAGGCCACACGAACTT-GTGGCAAATTTT
1 AGTCCTCAAAGAGCAGGACGCCTTTCC-TTTTAAAGCCCACAC-AAGTTGGTGGCACCTTCT
* * ** *
730782 AGTCCTCAAAGAGCAGGATGCTTTCTCCTTGCAAAGCCCACACACGTTGGTGGC-CCTTCT
1 AGTCCTCAAAGAGCAGGACGCCTT-TCCTTTTAAAGCCCACACAAGTTGGTGGCACCTTCT
* * ** *
730842 AGTCCTCAAAGAGTAAGA-AACTTTCCTTTCAAAGCCCACACAAGTTGGTGGCACCTTCTT
1 AGTCCTCAAAGAGCAGGACGCCTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACCTTC-T
* * * *
730902 A-TCTTCAAAGAGTAGGACACCTTTTCCTTTTAAAACCCACACAAGTTGGTGGCACC-TCT
1 AGTCCTCAAAGAGCAGGACGCC-TTTCCTTTTAAAGCCCACACAAGTTGGTGGCACCTTCT
* * * * * *
730961 CAATCCTCAAAGAGCAAGACGCCTTCTCCTTTTAAAGCCCATAGAAGTTGGTAGCACCTTTT
1 -AGTCCTCAAAGAGCAGGACGCCTT-TCCTTTTAAAGCCCACACAAGTTGGTGGCACCTTCT
* * * *
731023 AGTCCTCAAAGAGCAGGACGCCTTTTCTTTTTAAAGCCCACATGAA-CTGGTGGCACCTTTT
1 AGTCCTCAAAGAGCAGGACGCC-TTTCCTTTTAAAGCCCACA-CAAGTTGGTGGCACCTTCT
* * * *
731084 AGTCCTCAAAGAGCAGGATGCTTTCTCCTTGTAAATCCCACACAAGTTGGTGGCACCTTCT
1 AGTCCTCAAAGAGCAGGACGCCTT-TCCTTTTAAAGCCCACACAAGTTGGTGGCACCTTCT
*
731145 AGTCC-CTAAAGAGTAGGAC
1 AGTCCTC-AAAGAGCAGGAC
731164 ATGCTTTTTT
Statistics
Matches: 366, Mismatches: 60, Indels: 34
0.80 0.13 0.07
Matches are distributed among these distances:
58 27 0.07
59 22 0.06
60 41 0.11
61 262 0.72
62 14 0.04
ACGTcount: A:0.27, C:0.27, G:0.19, T:0.27
Consensus pattern (60 bp):
AGTCCTCAAAGAGCAGGACGCCTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACCTTCT
Found at i:731032 original size:122 final size:121
Alignment explanation
Indices: 730654--731164 Score: 534
Period size: 122 Copynumber: 4.2 Consensus size: 121
730644 AACCTTTTAT
* * *
730654 CTTTTCAGTCCTTAAAGAGCAAGACACTTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACCTT
1 CTTTT-AGTCCTCAAAGAGCAGGACACCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACCTT
* * * * * *
730719 CTGGTCCCCAAAGAGCAGGATGCCTTTCCTTTTTAAAGGCCACACGAACTT-GTGGCAA
65 CTAGTCCTCAAAGAGCAAGATGCCTTTCC-TTTTAAAGCCCACAC-AAGTTGGTGGCAC
* ** ** *
730777 ATTTTAGTCCTCAAAGAGCAGGA-TGCTTTCTCCTTGCAAAGCCCACACACGTTGGTGGC-CCTT
1 CTTTTAGTCCTCAAAGAGCAGGACACCTTT-TCCTTTTAAAGCCCACACAAGTTGGTGGCACCTT
* ** *
730840 CTAGTCCTCAAAGAGTAAGA-AACTTTCCTTTCAAAGCCCACACAAGTTGGTGGCAC
65 CTAGTCCTCAAAGAGCAAGATGCCTTTCCTTTTAAAGCCCACACAAGTTGGTGGCAC
* * *
730896 CTTCTTA-TCTTCAAAGAGTAGGACACCTTTTCCTTTTAAAACCCACACAAGTTGGTGGCACC-T
1 CTT-TTAGTCCTCAAAGAGCAGGACACCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACCTT
* * * * *
730959 CTCAATCCTCAAAGAGCAAGACGCCTTCTCCTTTTAAAGCCCATAGAAGTTGGTAGCAC
65 CT-AGTCCTCAAAGAGCAAGATGCCTT-TCCTTTTAAAGCCCACACAAGTTGGTGGCAC
* * * *
731018 CTTTTAGTCCTCAAAGAGCAGGACGCCTTTTCTTTTTAAAGCCCACATGAA-CTGGTGGCACCTT
1 CTTTTAGTCCTCAAAGAGCAGGACACCTTTTCCTTTTAAAGCCCACA-CAAGTTGGTGGCACCTT
* * * * *
731082 TTAGTCCTCAAAGAGCAGGATGCTTTCTCCTTGTAAATCCCACACAAGTTGGTGGCAC
65 CTAGTCCTCAAAGAGCAAGATGCCTT-TCCTTTTAAAGCCCACACAAGTTGGTGGCAC
* *
731140 CTTCTAGTCC-CTAAAGAGTAGGACA
1 CTTTTAGTCCTC-AAAGAGCAGGACA
731165 TGCTTTTTTT
Statistics
Matches: 320, Mismatches: 56, Indels: 25
0.80 0.14 0.06
Matches are distributed among these distances:
118 4 0.01
119 63 0.20
120 31 0.10
121 30 0.09
122 184 0.57
123 8 0.03
ACGTcount: A:0.27, C:0.27, G:0.18, T:0.28
Consensus pattern (121 bp):
CTTTTAGTCCTCAAAGAGCAGGACACCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACCTTC
TAGTCCTCAAAGAGCAAGATGCCTTTCCTTTTAAAGCCCACACAAGTTGGTGGCAC
Found at i:731217 original size:41 final size:42
Alignment explanation
Indices: 731152--731258 Score: 110
Period size: 41 Copynumber: 2.6 Consensus size: 42
731142 TCTAGTCCCT
** *
731152 AAAGAGTAGGACATGCTTTTTTTCCTTTTC-CCTCTATCCTC
1 AAAGAGTAGGACACACTTTATTTCCTTTTCTCCTCTATCCTC
* * * *
731193 AAAGAGTAGGACGCACTTTATTTCCTTTTCTCCTTTGTCCTT
1 AAAGAGTAGGACACACTTTATTTCCTTTTCTCCTCTATCCTC
* *
731235 AAAGAGCATGACACA-TTTAATTTC
1 AAAGAGTAGGACACACTTT-ATTTC
731259 ATGCTTTTCT
Statistics
Matches: 54, Mismatches: 10, Indels: 3
0.81 0.15 0.04
Matches are distributed among these distances:
41 29 0.54
42 25 0.46
ACGTcount: A:0.24, C:0.23, G:0.13, T:0.39
Consensus pattern (42 bp):
AAAGAGTAGGACACACTTTATTTCCTTTTCTCCTCTATCCTC
Found at i:731307 original size:34 final size:33
Alignment explanation
Indices: 731263--731330 Score: 100
Period size: 34 Copynumber: 2.0 Consensus size: 33
731253 AATTTCATGC
* * *
731263 TTTTCTTTTGTCCTCGAAGAGTAGGATGCACTCT
1 TTTTCCTTTGTCCTCAAAGAGCAGGATGC-CTCT
731297 TTTTCCTTTGTCCTCAAAGAGCAGGATGCCTCT
1 TTTTCCTTTGTCCTCAAAGAGCAGGATGCCTCT
731330 T
1 T
731331 CCTTTTCTTT
Statistics
Matches: 31, Mismatches: 3, Indels: 1
0.89 0.09 0.03
Matches are distributed among these distances:
33 5 0.16
34 26 0.84
ACGTcount: A:0.18, C:0.24, G:0.19, T:0.40
Consensus pattern (33 bp):
TTTTCCTTTGTCCTCAAAGAGCAGGATGCCTCT
Found at i:734420 original size:79 final size:79
Alignment explanation
Indices: 734330--734925 Score: 655
Period size: 79 Copynumber: 7.6 Consensus size: 79
734320 ATTCACGTTT
* * * * * *
734330 TTATTTATGAGGGGATACTCTAACCTTGGTTTTATTTCCAAAACACTAGTTTTTCACAGTCGGGG
1 TTATTTTTGAGGGGATACTCCAACCCTGGTTTTATTTCCAAAACACTAATTTTTCACAATCAGGG
*
734395 ATACTCTAACCTCG
66 ATACTCCAACCTCG
* * *
734409 TTATTTTTGAGGGGATACTCTAACCCTAGTTTTATTTCCAAAACACTAATTTTTCACAATTAGGG
1 TTATTTTTGAGGGGATACTCCAACCCTGGTTTTATTTCCAAAACACTAATTTTTCACAATCAGGG
734474 ATACTCCAACC-CG
66 ATACTCCAACCTCG
* * * **
734487 TTCTTTTCGAGGGGATACTCCAACCCTGATTTTATTTCCAAAACACTAATTTTTCACAATTGGGG
1 TTATTTTTGAGGGGATACTCCAACCCTGGTTTTATTTCCAAAACACTAATTTTTCACAATCAGGG
*
734552 ATACTCTAACCGT-G
66 ATACTCCAACC-TCG
* * ** * * * *
734566 TTATTTTCGAGGGGATACTACAACCCTGGTTTTATTTATAAAATAATAATTTTTCATAATCAAGG
1 TTATTTTTGAGGGGATACTCCAACCCTGGTTTTATTTCCAAAACACTAATTTTTCACAATCAGGG
*
734631 ATACTCCAACCCCG
66 ATACTCCAACCTCG
*** * * * * *
734645 TTATTTCCAAGGAGATACTCCAACCCT-GATTTATTTCCAAAATACTAATTTTTCATAATCGGGG
1 TTATTTTTGAGGGGATACTCCAACCCTGGTTTTATTTCCAAAACACTAATTTTTCACAATCAGGG
*
734709 ATACTCCAACCCCG
66 ATACTCCAACCTCG
* * * * * * *
734723 TTATTTCTGAAGGAATACTCCAACTCC-AGTTTTATTTCCGAAACACCT-ATTTTCCACAATCAA
1 TTATTTTTGAGGGGATACTCCAAC-CCTGGTTTTATTTCCAAAACA-CTAATTTTTCACAATCAG
734786 GGATACTCCAACCTCG
64 GGATACTCCAACCTCG
** * * *
734802 TTATTTCAGAGGGGATACTCCAA-CCTCGGCTTTATTTTCAAAACACCAATTTTTCACAATCAGG
1 TTATTTTTGAGGGGATACTCCAACCCT-GGTTTTATTTCCAAAACACTAATTTTTCACAATCAGG
* *
734866 GATACTCTAACCTTG
65 GATACTCCAACCTCG
* * *
734881 TTATTTTTTAGGGGATACTCCAACCCCGATTTTATTTCCAAAACA
1 TTATTTTTGAGGGGATACTCCAACCCTGGTTTTATTTCCAAAACA
734926 TCGATTTTCC
Statistics
Matches: 437, Mismatches: 70, Indels: 20
0.83 0.13 0.04
Matches are distributed among these distances:
77 2 0.00
78 136 0.31
79 295 0.68
80 4 0.01
ACGTcount: A:0.29, C:0.23, G:0.13, T:0.35
Consensus pattern (79 bp):
TTATTTTTGAGGGGATACTCCAACCCTGGTTTTATTTCCAAAACACTAATTTTTCACAATCAGGG
ATACTCCAACCTCG
Found at i:734633 original size:157 final size:155
Alignment explanation
Indices: 734338--734925 Score: 675
Period size: 157 Copynumber: 3.7 Consensus size: 155
734328 TTTTATTTAT
* * * * *
734338 GAGGGGATACTCTAACCTTGGTTTTATTTCCAAAACACTAGTTTTTCACAGTCGGGGATACTCTA
1 GAGGGGATACTCCAACCCTGATTTTATTTCCAAAACACTAATTTTTCACAATCGGGGATACTCTA
* *
734403 ACCTCGTTATTTTTGAGGGGATACTCTAACCCTAGTTTTATTTCCAAAACACTAATTTTTCACAA
66 ACCT-GTTATTTTCGAGGGGATACTCCAACCCTAGTTTTATTTCCAAAACACTAATTTTTCACAA
* *
734468 TTAGGGATACTCCAACCCGTTCTTTTC
130 TCAAGGATACTCCAACCCGTT-TTTTC
*
734495 GAGGGGATACTCCAACCCTGATTTTATTTCCAAAACACTAATTTTTCACAATTGGGGATACTCTA
1 GAGGGGATACTCCAACCCTGATTTTATTTCCAAAACACTAATTTTTCACAATCGGGGATACTCTA
* * ** * * *
734560 ACCGTGTTATTTTCGAGGGGATACTACAACCCTGGTTTTATTTATAAAATAATAATTTTTCATAA
66 ACC-TGTTATTTTCGAGGGGATACTCCAACCCTAGTTTTATTTCCAAAACACTAATTTTTCACAA
*
734625 TCAAGGATACTCCAACCCCGTTATTTCC
130 TCAAGGATACTCCAA-CCCGTT-TTTTC
* * * * *
734653 AAGGAGATACTCCAACCCTGA-TTTATTTCCAAAATACTAATTTTTCATAATCGGGGATACTCCA
1 GAGGGGATACTCCAACCCTGATTTTATTTCCAAAACACTAATTTTTCACAATCGGGGATACTCTA
* * * * *
734717 ACCCCGTTA-TTTCTGAAGGAATACTCCAACTCC-AGTTTTATTTCCGAAACACCT-ATTTTCCA
66 A-CCTGTTATTTTC-GAGGGGATACTCCAAC-CCTAGTTTTATTTCCAAAACA-CTAATTTTTCA
*
734779 CAATCAAGGATACTCCAACCTCGTTATTTC
127 CAATCAAGGATACTCCAACC-CGTTTTTTC
** * * *
734809 AGAGGGGATACTCCAA-CCTCGGCTTTATTTTCAAAACACCAATTTTTCACAATCAGGGATACTC
1 -GAGGGGATACTCCAACCCT-GATTTTATTTCCAAAACACTAATTTTTCACAATCGGGGATACTC
** *
734873 TAACCTTGTTATTTTTTAGGGGATACTCCAACCC-CGATTTTATTTCCAAAACA
64 TAACC-TGTTATTTTCGAGGGGATACTCCAACCCTAG-TTTTATTTCCAAAACA
734926 TCGATTTTCC
Statistics
Matches: 363, Mismatches: 55, Indels: 25
0.82 0.12 0.06
Matches are distributed among these distances:
156 12 0.03
157 243 0.67
158 105 0.29
159 3 0.01
ACGTcount: A:0.29, C:0.23, G:0.13, T:0.34
Consensus pattern (155 bp):
GAGGGGATACTCCAACCCTGATTTTATTTCCAAAACACTAATTTTTCACAATCGGGGATACTCTA
ACCTGTTATTTTCGAGGGGATACTCCAACCCTAGTTTTATTTCCAAAACACTAATTTTTCACAAT
CAAGGATACTCCAACCCGTTTTTTC
Found at i:734758 original size:236 final size:233
Alignment explanation
Indices: 734330--734925 Score: 675
Period size: 236 Copynumber: 2.5 Consensus size: 233
734320 ATTCACGTTT
* * * * *
734330 TTATTTAT-GAGGGGATACTCTAACCTTGGTTTTATTTCCAAAACACTAGTTTTTCACAGTCGGG
1 TTATTT-TCGAGGGGATACTC-AACCCTGGTTTTATTT-TAAAACACTAATTTTTCACAATCAGG
* * *
734394 GATACTCTAACCTCGTTATTTTTGAGGGGATACTCTAACCCTAGTTTTATTTCCAAAACACTAAT
63 GATACTCTAACCTCGTTATTTTTAAGGGGATACTCCAACCCT-GATTTATTTCCAAAACACTAAT
* * * * *
734459 TTTTCACAATTAGGGATACTCCAACCCGTTCTTTTCGAGGGGATACTCCAACCCTGATTTTATTT
127 TTTTCACAATCAGGGATACTCCAACCCGTTATTTTCGAAGGAATACTCCAACCCAGATTTTATTT
* *** *
734524 CCAAAACA-CTAATTTTTCACAATTGGGGATACTCTAACCGT-G
192 CCAAAACACCT-ATTTTCCACAATCAAGGATACTCCAACC-TCG
* * * *
734566 TTATTTTCGAGGGGATACTACAACCCTGGTTTTATTTATAAAATAATAATTTTTCATAATCAAGG
1 TTATTTTCGAGGGGATACT-CAACCCTGGTTTTATTT-TAAAACACTAATTTTTCACAATCAGGG
* * ** * *
734631 ATACTCCAACCCCGTTATTTCCAAGGAGATACTCCAACCCTGATTTATTTCCAAAATACTAATTT
64 ATACTCTAACCTCGTTATTTTTAAGGGGATACTCCAACCCTGATTTATTTCCAAAACACTAATTT
* *
734696 TTCATAATCGGGGATACTCCAACCCCGTTA-TTTCTGAAGGAATACTCCAACTCCAG-TTTTATT
129 TTCACAATCAGGGATACTCCAA-CCCGTTATTTTC-GAAGGAATACTCCAAC-CCAGATTTTATT
*
734759 TCCGAAACACCTATTTTCCACAATCAAGGATACTCCAACCTCG
191 TCCAAAACACCTATTTTCCACAATCAAGGATACTCCAACCTCG
* *
734802 TTA-TTTCAGAGGGGATACTCCAA-CCTCGGCTTTATTTTCAAAACACCAATTTTTCACAATCAG
1 TTATTTTC-GAGGGGATACT-CAACCCT-GGTTTTATTTT-AAAACACTAATTTTTCACAATCAG
* * *
734865 GGATACTCTAACCTTGTTATTTTTTAGGGGATACTCCAACCCCGATTTTATTTCCAAAACA
62 GGATACTCTAACCTCGTTATTTTTAAGGGGATACTCCAACCCTGA-TTTATTTCCAAAACA
734926 TCGATTTTCC
Statistics
Matches: 301, Mismatches: 48, Indels: 21
0.81 0.13 0.06
Matches are distributed among these distances:
235 55 0.18
236 226 0.75
237 20 0.07
ACGTcount: A:0.29, C:0.23, G:0.13, T:0.35
Consensus pattern (233 bp):
TTATTTTCGAGGGGATACTCAACCCTGGTTTTATTTTAAAACACTAATTTTTCACAATCAGGGAT
ACTCTAACCTCGTTATTTTTAAGGGGATACTCCAACCCTGATTTATTTCCAAAACACTAATTTTT
CACAATCAGGGATACTCCAACCCGTTATTTTCGAAGGAATACTCCAACCCAGATTTTATTTCCAA
AACACCTATTTTCCACAATCAAGGATACTCCAACCTCG
Found at i:734933 original size:79 final size:78
Alignment explanation
Indices: 734330--734994 Score: 574
Period size: 79 Copynumber: 8.4 Consensus size: 78
734320 ATTCACGTTT
* * ** * * * *
734330 TTATTTATGAGGGGATACTCTAACCTTGGTTTTATTTCCAAAACACTAGTTTTTCACAGTCGGGG
1 TTATTTTTGAGGGGATACTCCAACCCCGATTTTATTTCCAAAACAC-AATTTTTCACAATCAGGG
*
734395 ATACTCTAACCTCG
65 ATACTCCAACCTCG
* * *
734409 TTATTTTTGAGGGGATACTCTAA-CCCTAGTTTTATTTCCAAAACACTAATTTTTCACAATTAGG
1 TTATTTTTGAGGGGATACTCCAACCCCGA-TTTTATTTCCAAAACAC-AATTTTTCACAATCAGG
734473 GATACTCCAACC-CG
64 GATACTCCAACCTCG
* * * **
734487 TTCTTTTCGAGGGGATACTCCAACCCTGATTTTATTTCCAAAACACTAATTTTTCACAATTGGGG
1 TTATTTTTGAGGGGATACTCCAACCCCGATTTTATTTCCAAAACAC-AATTTTTCACAATCAGGG
*
734552 ATACTCTAACCGT-G
65 ATACTCCAACC-TCG
* * * * ** * * * *
734566 TTATTTTCGAGGGGATACTACAACCCTGGTTTTATTTATAAAATAATAATTTTTCATAATCAAGG
1 TTATTTTTGAGGGGATACTCCAACCCCGATTTTATTTCCAAAA-CACAATTTTTCACAATCAGGG
*
734631 ATACTCCAACCCCG
65 ATACTCCAACCTCG
*** * * * * *
734645 TTATTTCCAAGGAGATACTCCAACCCTGA-TTTATTTCCAAAATACTAATTTTTCATAATCGGGG
1 TTATTTTTGAGGGGATACTCCAACCCCGATTTTATTTCCAAAACAC-AATTTTTCACAATCAGGG
*
734709 ATACTCCAACCCCG
65 ATACTCCAACCTCG
* * * * * * * *
734723 TTATTTCTGAAGGAATACTCCAACTCC-AGTTTTATTTCCGAAACACCTATTTTCCACAATCAAG
1 TTATTTTTGAGGGGATACTCCAACCCCGA-TTTTATTTCCAAAACA-CAATTTTTCACAATCAGG
734787 GATACTCCAACCTCG
64 GATACTCCAACCTCG
** * ** *
734802 TTATTTCAGAGGGGATACTCCAACCTCGGCTTTATTTTCAAAACACCAATTTTTCACAATCAGGG
1 TTATTTTTGAGGGGATACTCCAACCCCGATTTTATTTCCAAAACA-CAATTTTTCACAATCAGGG
* *
734867 ATACTCTAACCTTG
65 ATACTCCAACCTCG
* *
734881 TTATTTTTTAGGGGATACTCCAACCCCGATTTTATTTCCAAAACATCGA-TTTTC-CAA-CATTG
1 TTATTTTTGAGGGGATACTCCAACCCCGATTTTATTTCCAAAACA-CAATTTTTCACAATCA--G
*
734943 GAGATGCTCCAACC-CTG
63 G-GATACTCCAACCTC-G
* * ** *
734960 TTATTTCTGAGGGGGTACTCTGACCCCGTTTTTAT
1 TTATTTTTGAGGGGATACTCCAACCCCGATTTTAT
734995 CTCTAAAATA
Statistics
Matches: 483, Mismatches: 88, Indels: 30
0.80 0.15 0.05
Matches are distributed among these distances:
76 2 0.00
77 5 0.01
78 136 0.28
79 338 0.70
80 2 0.00
ACGTcount: A:0.28, C:0.23, G:0.14, T:0.35
Consensus pattern (78 bp):
TTATTTTTGAGGGGATACTCCAACCCCGATTTTATTTCCAAAACACAATTTTTCACAATCAGGGA
TACTCCAACCTCG
Found at i:740345 original size:51 final size:50
Alignment explanation
Indices: 740289--740471 Score: 190
Period size: 51 Copynumber: 3.6 Consensus size: 50
740279 TGATTATGTA
* *
740289 AAAGATCGATAGAGTCAATTTTTCTTTTTGTCTACTTCATTCAGTTATATG
1 AAAGATCAATAGAGTTAATTTTTCTTTTTGTCTACTTCATT-AGTTATATG
* ** * * * *
740340 AAAGATCAATGGAGTTAGGTTTTCTCTTTGTCTACTTCATTTGATTACAAG
1 AAAGATCAATAGAGTTAATTTTTCTTTTTGTCTACTTCATTAG-TTATATG
* * * *
740391 GAAGATCAATAGAGTTAATTTTTCTTTTTGTCTACTTCATTTGGTCATATC
1 AAAGATCAATAGAGTTAATTTTTCTTTTTGTCTACTTCA-TTAGTTATATG
*
740442 AAAGATC-AT-GAAGTTAATTTTTCTTCTTGT
1 AAAGATCAATAG-AGTTAATTTTTCTTTTTGT
740472 TCGCTTCATT
Statistics
Matches: 108, Mismatches: 21, Indels: 7
0.79 0.15 0.05
Matches are distributed among these distances:
49 1 0.01
50 21 0.19
51 83 0.77
52 3 0.03
ACGTcount: A:0.27, C:0.13, G:0.15, T:0.45
Consensus pattern (50 bp):
AAAGATCAATAGAGTTAATTTTTCTTTTTGTCTACTTCATTAGTTATATG
Found at i:746476 original size:13 final size:13
Alignment explanation
Indices: 746458--746483 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
746448 CTTTACTCAA
746458 TGTATCGATACAT
1 TGTATCGATACAT
746471 TGTATCGATACAT
1 TGTATCGATACAT
746484 GGATCTTTGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:755937 original size:13 final size:13
Alignment explanation
Indices: 755919--755944 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
755909 ACAAAGATCC
755919 ATGTATCGATACA
1 ATGTATCGATACA
755932 ATGTATCGATACA
1 ATGTATCGATACA
755945 TTGAGTAATG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:757847 original size:20 final size:19
Alignment explanation
Indices: 757793--757848 Score: 76
Period size: 20 Copynumber: 2.8 Consensus size: 19
757783 AAAACCCTTA
*
757793 AAAGTATCGATACACAGTTC
1 AAAGTATCGATACA-TGTTC
757813 AAAGTATCGATACATGTTGC
1 AAAGTATCGATACATGTT-C
*
757833 AATGTATCGATACATG
1 AAAGTATCGATACATG
757849 AAAAAGATGT
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
19 3 0.09
20 30 0.91
ACGTcount: A:0.38, C:0.16, G:0.18, T:0.29
Consensus pattern (19 bp):
AAAGTATCGATACATGTTC
Found at i:757924 original size:19 final size:19
Alignment explanation
Indices: 757900--757964 Score: 70
Period size: 21 Copynumber: 3.6 Consensus size: 19
757890 TAGCCAAACT
757900 TGTATCGATACACAAAATA
1 TGTATCGATACACAAAATA
757919 TGTATCGAT--AC---A-A
1 TGTATCGATACACAAAATA
757932 TGTATCGATACACAAAAAATA
1 TGTATCGATACAC--AAAATA
757953 TGTATCGATACA
1 TGTATCGATACA
757965 TTGGCTTGTA
Statistics
Matches: 38, Mismatches: 0, Indels: 14
0.73 0.00 0.27
Matches are distributed among these distances:
13 10 0.26
14 1 0.03
15 2 0.05
17 2 0.05
19 9 0.24
20 1 0.03
21 13 0.34
ACGTcount: A:0.45, C:0.15, G:0.12, T:0.28
Consensus pattern (19 bp):
TGTATCGATACACAAAATA
Found at i:757936 original size:13 final size:13
Alignment explanation
Indices: 757918--757943 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
757908 TACACAAAAT
757918 ATGTATCGATACA
1 ATGTATCGATACA
757931 ATGTATCGATACA
1 ATGTATCGATACA
757944 CAAAAAATAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:757941 original size:32 final size:33
Alignment explanation
Indices: 757900--757964 Score: 114
Period size: 34 Copynumber: 2.0 Consensus size: 33
757890 TAGCCAAACT
757900 TGTATCGATACAC-AAAATATGTATCGATACAA
1 TGTATCGATACACAAAAATATGTATCGATACAA
757932 TGTATCGATACACAAAAAATATGTATCGATACA
1 TGTATCGATACAC-AAAAATATGTATCGATACA
757965 TTGGCTTGTA
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
32 13 0.42
34 18 0.58
ACGTcount: A:0.45, C:0.15, G:0.12, T:0.28
Consensus pattern (33 bp):
TGTATCGATACACAAAAATATGTATCGATACAA
Found at i:762003 original size:15 final size:15
Alignment explanation
Indices: 761983--762013 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
761973 TAAAAATGTC
*
761983 CAAAATGAGGAAGCT
1 CAAAATGAAGAAGCT
761998 CAAAATGAAGAAGCT
1 CAAAATGAAGAAGCT
762013 C
1 C
762014 CAAACGAAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.48, C:0.16, G:0.23, T:0.13
Consensus pattern (15 bp):
CAAAATGAAGAAGCT
Found at i:764112 original size:13 final size:13
Alignment explanation
Indices: 764094--764131 Score: 67
Period size: 13 Copynumber: 2.9 Consensus size: 13
764084 CATTTTTCTT
764094 TGTATCGATACAA
1 TGTATCGATACAA
*
764107 TGTATCGATACAC
1 TGTATCGATACAA
764120 TGTATCGATACA
1 TGTATCGATACA
764132 GGGGGATTAT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 24 1.00
ACGTcount: A:0.34, C:0.18, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:764286 original size:20 final size:20
Alignment explanation
Indices: 764243--764288 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 20
764233 AAATCTTTTG
764243 CAAAATACTTGTTTTTCACTT
1 CAAAATACTTGTTTTTCAC-T
*
764264 CAAATTACTTCGTTTTTCA-T
1 CAAAATACTT-GTTTTTCACT
764284 CAAAA
1 CAAAA
764289 CCAGCATCAA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
20 5 0.23
21 9 0.41
22 8 0.36
ACGTcount: A:0.33, C:0.20, G:0.04, T:0.43
Consensus pattern (20 bp):
CAAAATACTTGTTTTTCACT
Found at i:766597 original size:20 final size:19
Alignment explanation
Indices: 766543--766598 Score: 76
Period size: 20 Copynumber: 2.8 Consensus size: 19
766533 AAAACCCTTA
*
766543 AAAGTATCGATACACAGTTC
1 AAAGTATCGATACA-TGTTC
766563 AAAGTATCGATACATGTTGC
1 AAAGTATCGATACATGTT-C
*
766583 AATGTATCGATACATG
1 AAAGTATCGATACATG
766599 AAAAAGATGT
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
19 3 0.09
20 30 0.91
ACGTcount: A:0.38, C:0.16, G:0.18, T:0.29
Consensus pattern (19 bp):
AAAGTATCGATACATGTTC
Found at i:766686 original size:13 final size:13
Alignment explanation
Indices: 766668--766693 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
766658 TACACAAAAT
766668 ATGTATCGATACA
1 ATGTATCGATACA
766681 ATGTATCGATACA
1 ATGTATCGATACA
766694 CAAAAAATAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:766706 original size:34 final size:34
Alignment explanation
Indices: 766650--766748 Score: 184
Period size: 34 Copynumber: 3.0 Consensus size: 34
766640 TAGCCAAACT
766650 TGTATCGATACAC--AAAATATGTATCGATACAA
1 TGTATCGATACACAAAAAATATGTATCGATACAA
766682 TGTATCGATACACAAAAAATATGTATCGATACAA
1 TGTATCGATACACAAAAAATATGTATCGATACAA
766716 TGTATCGATACACAAAAAATATGTATCGATACA
1 TGTATCGATACACAAAAAATATGTATCGATACA
766749 TTGGCTTGTA
Statistics
Matches: 65, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
32 13 0.20
34 52 0.80
ACGTcount: A:0.45, C:0.15, G:0.12, T:0.27
Consensus pattern (34 bp):
TGTATCGATACACAAAAAATATGTATCGATACAA
Found at i:766720 original size:13 final size:13
Alignment explanation
Indices: 766702--766727 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
766692 CACAAAAAAT
766702 ATGTATCGATACA
1 ATGTATCGATACA
766715 ATGTATCGATACA
1 ATGTATCGATACA
766728 CAAAAAATAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:770509 original size:12 final size:12
Alignment explanation
Indices: 770492--770522 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
770482 CGATTCAACT
770492 TCATCATTATCA
1 TCATCATTATCA
*
770504 TCATCATTATCT
1 TCATCATTATCA
770516 TCATCAT
1 TCATCAT
770523 CTTTAATGGT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.29, C:0.26, G:0.00, T:0.45
Consensus pattern (12 bp):
TCATCATTATCA
Found at i:771537 original size:13 final size:13
Alignment explanation
Indices: 771519--771544 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
771509 TGCCAGTTTC
771519 ATGTATCGATACA
1 ATGTATCGATACA
771532 ATGTATCGATACA
1 ATGTATCGATACA
771545 TCTAGATTTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:781768 original size:22 final size:22
Alignment explanation
Indices: 781727--781768 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
781717 CACCCATACC
* * *
781727 TTTGTCATAAAGTGACAAAATA
1 TTTGTCAAAAAGAGAAAAAATA
781749 TTTGTCAAAAAGAGAAAAAA
1 TTTGTCAAAAAGAGAAAAAA
781769 GAAGGAAGGA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.52, C:0.07, G:0.14, T:0.26
Consensus pattern (22 bp):
TTTGTCAAAAAGAGAAAAAATA
Found at i:785531 original size:13 final size:13
Alignment explanation
Indices: 785513--785538 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
785503 ATATTTTTTG
785513 TGTATCGATACAT
1 TGTATCGATACAT
785526 TGTATCGATACAT
1 TGTATCGATACAT
785539 ATTTTGTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:785549 original size:32 final size:33
Alignment explanation
Indices: 785492--785556 Score: 114
Period size: 32 Copynumber: 2.0 Consensus size: 33
785482 TACAAGCCAA
785492 TGTATCGATACATATTTTTTGTGTATCGATACAT
1 TGTATCGATACATA-TTTTTGTGTATCGATACAT
785526 TGTATCGATACATA-TTTTGTGTATCGATACA
1 TGTATCGATACATATTTTTGTGTATCGATACA
785557 AGTTTGGCTA
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
32 17 0.55
34 14 0.45
ACGTcount: A:0.28, C:0.12, G:0.15, T:0.45
Consensus pattern (33 bp):
TGTATCGATACATATTTTTGTGTATCGATACAT
Found at i:785550 original size:19 final size:19
Alignment explanation
Indices: 785492--785556 Score: 70
Period size: 19 Copynumber: 3.6 Consensus size: 19
785482 TACAAGCCAA
785492 TGTATCGATACATATTTTTTG
1 TGTATCGATACATA--TTTTG
785513 TGTATCGATAC--A---T-
1 TGTATCGATACATATTTTG
785526 TGTATCGATACATATTTTG
1 TGTATCGATACATATTTTG
785545 TGTATCGATACA
1 TGTATCGATACA
785557 AGTTTGGCTA
Statistics
Matches: 38, Mismatches: 0, Indels: 14
0.73 0.00 0.27
Matches are distributed among these distances:
13 11 0.29
14 1 0.03
15 1 0.03
18 1 0.03
19 13 0.34
21 11 0.29
ACGTcount: A:0.28, C:0.12, G:0.15, T:0.45
Consensus pattern (19 bp):
TGTATCGATACATATTTTG
Found at i:785636 original size:20 final size:19
Alignment explanation
Indices: 785608--785660 Score: 61
Period size: 20 Copynumber: 2.7 Consensus size: 19
785598 ACATCTTTTT
*
785608 CATGAATCGATACATTGCAA
1 CATGTATCGATACATTG-AA
*
785628 CATGTATCGATACTTTGAA
1 CATGTATCGATACATTGAA
*
785647 CTGTGTATCGATAC
1 C-ATGTATCGATAC
785661 TTTTAAGGGT
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
19 3 0.10
20 26 0.90
ACGTcount: A:0.32, C:0.19, G:0.17, T:0.32
Consensus pattern (19 bp):
CATGTATCGATACATTGAA
Found at i:788273 original size:21 final size:20
Alignment explanation
Indices: 788248--788303 Score: 69
Period size: 19 Copynumber: 2.8 Consensus size: 20
788238 CTACAAGTTT
**
788248 CATGTATCGATACAATTTGTC
1 CATGTATCGATACAA-TTGAA
*
788269 CATGTATCGATCCAA-TGAA
1 CATGTATCGATACAATTGAA
788288 CATGTATCGATACAAT
1 CATGTATCGATACAAT
788304 GTATCGATAC
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
19 16 0.53
21 14 0.47
ACGTcount: A:0.34, C:0.20, G:0.14, T:0.32
Consensus pattern (20 bp):
CATGTATCGATACAATTGAA
Found at i:788307 original size:13 final size:13
Alignment explanation
Indices: 788289--788315 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
788279 TCCAATGAAC
788289 ATGTATCGATACA
1 ATGTATCGATACA
788302 ATGTATCGATACA
1 ATGTATCGATACA
788315 A
1 A
788316 AGCAGCATGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.41, C:0.15, G:0.15, T:0.30
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:788330 original size:33 final size:32
Alignment explanation
Indices: 788270--788334 Score: 94
Period size: 33 Copynumber: 2.0 Consensus size: 32
788260 CAATTTGTCC
* *
788270 ATGTATCGATCCAATGAACATGTATCGATACA
1 ATGTATCGATACAAAGAACATGTATCGATACA
*
788302 ATGTATCGATACAAAGCAGCATGTATCGATACA
1 ATGTATCGATACAAAG-AACATGTATCGATACA
788335 TCTGGGTGTG
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
32 14 0.48
33 15 0.52
ACGTcount: A:0.38, C:0.18, G:0.17, T:0.26
Consensus pattern (32 bp):
ATGTATCGATACAAAGAACATGTATCGATACA
Found at i:788811 original size:61 final size:62
Alignment explanation
Indices: 788621--789077 Score: 402
Period size: 61 Copynumber: 7.2 Consensus size: 62
788611 GATCCTAACA
* * *
788621 CACCTTTTAGTCCTCAAAGAGCAGGACACTCGCCTTTTCCTTTTAAAAGCCCGCATAAGCTGGTG
1 CACCTTTTAGTCCTCAAAGAGCAGG--ACT-GCCTTTTCCTTTT-AAAGCCCACACAAGTTGGTG
788686 G
62 G
* * * * * *
788687 CAGCTTTTAGTCCTCAAAGAGCAGGACT-CATTTTTCTTTTTAAAGCCCACACGAGTCGATGG
1 CACCTTTTAGTCCTCAAAGAGCAGGACTGC-CTTTTCCTTTTAAAGCCCACACAAGTTGGTGG
* *
788749 CACCTTTTAGTCCTCAAAGAGTAGGA-TGCCTTTTCCTTTTAAAGCCCACACGAGTTGGTGG
1 CACCTTTTAGTCCTCAAAGAGCAGGACTGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGG
** * * * * * * *
788810 CAGTTTTTAGTCCTCAAAAAGTAAGACACTCGCGTTTTTCTTTTAAAGCCCACATAAGCTGGTGG
1 CACCTTTTAGTCCTCAAAGAG-CAG-GACT-GCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGG
* * * *
788875 CACCTTTTAGTCCTTAAAGAGCATGA-TGCCTTTTCCTTTTAAAGCTCACATAAGTTGGTGG
1 CACCTTTTAGTCCTCAAAGAGCAGGACTGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGG
* * * * * * *
788936 CACCTTTTAGTCCTCAAACAACAAGACACTTGCCTTTTTCTATTAAAGCGCATACAAGTTGGTGG
1 CACCTTTTAGTCCTCAAAGAGC-AG-GAC-TGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGG
** * * * * *
789001 CACTCCTTTTCAGTTTTCAAAGGGTAGGA-TGCTTTTTCTTTTTAAAGCCCACACAAGCTGGTGG
1 CA--CCTTTT-AGTCCTCAAAGAGCAGGACTGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGG
*
789065 CACCTCTTA-TCCT
1 CACCTTTTAGTCCT
789078 TTTTGTTCTC
Statistics
Matches: 315, Mismatches: 63, Indels: 32
0.77 0.15 0.08
Matches are distributed among these distances:
60 2 0.01
61 97 0.31
62 50 0.16
63 12 0.04
64 35 0.11
65 78 0.25
66 25 0.08
67 8 0.03
68 8 0.03
ACGTcount: A:0.25, C:0.25, G:0.18, T:0.32
Consensus pattern (62 bp):
CACCTTTTAGTCCTCAAAGAGCAGGACTGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGG
Found at i:788887 original size:126 final size:123
Alignment explanation
Indices: 788621--789066 Score: 464
Period size: 126 Copynumber: 3.5 Consensus size: 123
788611 GATCCTAACA
* *
788621 CACCTTTTAGTCCTCAAAGAGCAGGACACTCGCCTTTTCCTTTTAAAAGCCCGCATAAGCTGGTG
1 CACCTTTTAGTCCTCAAAGAGCAGG--A-T-GCCTTTTCCTTTT-AAAGCCCACACAAGCTGGTG
* * * * *
788686 GCAGCTTTTAGTCCTCAAAGAGCAG-GACT-CATTTTTCTTTTTAAAGCCCACACGAGTCGATGG
61 GCAGCTTTTAGTCCTCAAAAAGAAGACACTGCATTTTTC-TTTTAAAGCCCACACAAGT-GGTGG
* * * *
788749 CACCTTTTAGTCCTCAAAGAGTAGGATGCCTTTTCCTTTTAAAGCCCACACGAGTTGGTGGCAGT
1 CACCTTTTAGTCCTCAAAGAGCAGGATGCCTTTTCCTTTTAAAGCCCACACAAGCTGGTGGCAGC
* *
788814 TTTTAGTCCTCAAAAAGTAAGACACTCGCGTTTTTCTTTTAAAGCCCACATAAGCTGGTGG
66 TTTTAGTCCTCAAAAAG-AAGACACT-GCATTTTTCTTTTAAAGCCCACACAAG-TGGTGG
* * * * * *
788875 CACCTTTTAGTCCTTAAAGAGCATGATGCCTTTTCCTTTTAAAGCTCACATAAGTTGGTGGCACC
1 CACCTTTTAGTCCTCAAAGAGCAGGATGCCTTTTCCTTTTAAAGCCCACACAAGCTGGTGGCAGC
* * * * *
788940 TTTTAGTCCTCAAACAACAAGACACTTGCCTTTTTCTATTAAAGCGCATACAAGTTGGTGG
66 TTTTAGTCCTCAAA-AAGAAGACAC-TGCATTTTTCTTTTAAAGCCCACACAAG-TGGTGG
** * * * *
789001 CACTCCTTTTCAGTTTTCAAAGGGTAGGATGCTTTTTCTTTTTAAAGCCCACACAAGCTGGTGGC
1 CA--CCTTTT-AGTCCTCAAAGAGCAGGATGCCTTTTCCTTTTAAAGCCCACACAAGCTGGTGGC
789066 A
63 A
789067 CCTCTTATCC
Statistics
Matches: 269, Mismatches: 39, Indels: 19
0.82 0.12 0.06
Matches are distributed among these distances:
123 36 0.13
124 15 0.06
125 4 0.01
126 129 0.48
127 11 0.04
128 30 0.11
129 44 0.16
ACGTcount: A:0.25, C:0.24, G:0.19, T:0.32
Consensus pattern (123 bp):
CACCTTTTAGTCCTCAAAGAGCAGGATGCCTTTTCCTTTTAAAGCCCACACAAGCTGGTGGCAGC
TTTTAGTCCTCAAAAAGAAGACACTGCATTTTTCTTTTAAAGCCCACACAAGTGGTGG
Found at i:789172 original size:54 final size:55
Alignment explanation
Indices: 789101--789206 Score: 151
Period size: 54 Copynumber: 1.9 Consensus size: 55
789091 AAGCATGACT
* * * * *
789101 CTTTTTCTTTTTGAAGCCCACACAAGCTGGTGGTATTTTTTATCCTTTCAGTTGC
1 CTTTTTCTTTTTAAAGCCCACACAAACTGGTGGCATCTCTTATCCTTTCAGTTGC
*
789156 CTTTTT-TTTTTAAAGCCCACACAAACTGTTGGCATCTCTTATCCTTTCAGT
1 CTTTTTCTTTTTAAAGCCCACACAAACTGGTGGCATCTCTTATCCTTTCAGT
789207 CCTCAAAGAG
Statistics
Matches: 45, Mismatches: 6, Indels: 1
0.87 0.12 0.02
Matches are distributed among these distances:
54 39 0.87
55 6 0.13
ACGTcount: A:0.19, C:0.24, G:0.13, T:0.44
Consensus pattern (55 bp):
CTTTTTCTTTTTAAAGCCCACACAAACTGGTGGCATCTCTTATCCTTTCAGTTGC
Found at i:789271 original size:123 final size:124
Alignment explanation
Indices: 789032--789271 Score: 288
Period size: 123 Copynumber: 1.9 Consensus size: 124
789022 GGGTAGGATG
* ** * *
789032 CTTTTTCTTTTTAAAGCCCACACAAGCTGGTGGCACCTCTTATCCTTTTTGTTCTCAAAAAGCAT
1 CTTTTTCTTTTTAAAGCCCACACAAACTGGTGGCACCTCTTATCCTTTCAGTCCTCAAAAAGCAG
* * * ** *
789097 GACTCTTTTTCTTTTTGAAGCCCACACAAGCTGGTGGTATTTTTTATCCTTTCAGTTGC
66 GACTCTTTTTCTTTTTAAAGCCCACACAAGCTGGCGGCACCTTTTACCCTTTCAGTTGC
* * *
789156 CTTTTT-TTTTTAAAGCCCACACAAACTGTTGGCATCTCTTATCCTTTCAGTCCTCAAAGAGCAG
1 CTTTTTCTTTTTAAAGCCCACACAAACTGGTGGCACCTCTTATCCTTTCAGTCCTCAAAAAGCAG
* * *
789220 GA-TGCTTTTTCTTTTTAAAGCCTACACGAGTTGGCGGCACCCTTTT-CCCTTT
66 GACT-CTTTTTCTTTTTAAAGCCCACACAAGCTGGCGGCA-CCTTTTACCCTTT
789272 GAAGCCTAAT
Statistics
Matches: 97, Mismatches: 17, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
122 1 0.01
123 86 0.89
124 10 0.10
ACGTcount: A:0.20, C:0.25, G:0.15, T:0.40
Consensus pattern (124 bp):
CTTTTTCTTTTTAAAGCCCACACAAACTGGTGGCACCTCTTATCCTTTCAGTCCTCAAAAAGCAG
GACTCTTTTTCTTTTTAAAGCCCACACAAGCTGGCGGCACCTTTTACCCTTTCAGTTGC
Found at i:789651 original size:16 final size:16
Alignment explanation
Indices: 789614--789653 Score: 50
Period size: 14 Copynumber: 2.7 Consensus size: 16
789604 AAGATTTGTC
789614 AAAAAG-AGAAAAAAG
1 AAAAAGAAGAAAAAAG
*
789629 --AAGGAAGAAAAAAG
1 AAAAAGAAGAAAAAAG
789643 AAAAAGAAGAA
1 AAAAAGAAGAA
789654 TGGATGACTT
Statistics
Matches: 20, Mismatches: 2, Indels: 5
0.74 0.07 0.19
Matches are distributed among these distances:
13 3 0.15
14 9 0.45
16 8 0.40
ACGTcount: A:0.78, C:0.00, G:0.23, T:0.00
Consensus pattern (16 bp):
AAAAAGAAGAAAAAAG
Found at i:792910 original size:52 final size:52
Alignment explanation
Indices: 792761--792889 Score: 240
Period size: 52 Copynumber: 2.5 Consensus size: 52
792751 CGAAATATGA
*
792761 AAATTTACCTGCATGTATCGATACATTTCATAGTGTATCGATACATCTGGGC
1 AAATTTGCCTGCATGTATCGATACATTTCATAGTGTATCGATACATCTGGGC
*
792813 AAATTTGCCTGTATGTATCGATACATTTCATAGTGTATCGATACATCTGGGC
1 AAATTTGCCTGCATGTATCGATACATTTCATAGTGTATCGATACATCTGGGC
792865 AAATTTGCCTGCATGTATCGATACA
1 AAATTTGCCTGCATGTATCGATACA
792890 AAGATTAGTG
Statistics
Matches: 74, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
52 74 1.00
ACGTcount: A:0.29, C:0.19, G:0.18, T:0.35
Consensus pattern (52 bp):
AAATTTGCCTGCATGTATCGATACATTTCATAGTGTATCGATACATCTGGGC
Found at i:792951 original size:13 final size:13
Alignment explanation
Indices: 792933--792984 Score: 50
Period size: 13 Copynumber: 3.5 Consensus size: 13
792923 AGCTTCGTAG
792933 CGATACATTGTAT
1 CGATACATTGTAT
792946 CGATACAAAACTTATGTAT
1 CGATAC---A-TT--GTAT
792965 CGATACATTGTAT
1 CGATACATTGTAT
792978 CGATACA
1 CGATACA
792985 ACACTTATGT
Statistics
Matches: 33, Mismatches: 0, Indels: 12
0.73 0.00 0.27
Matches are distributed among these distances:
13 17 0.52
15 2 0.06
16 2 0.06
17 2 0.06
19 10 0.30
ACGTcount: A:0.37, C:0.17, G:0.13, T:0.33
Consensus pattern (13 bp):
CGATACATTGTAT
Found at i:792965 original size:19 final size:19
Alignment explanation
Indices: 792941--793005 Score: 79
Period size: 19 Copynumber: 3.7 Consensus size: 19
792931 AGCGATACAT
792941 TGTATCGATACAAAACTTA
1 TGTATCGATACAAAACTTA
792960 TGTATCGATAC---A--T-
1 TGTATCGATACAAAACTTA
*
792973 TGTATCGATACAACACTTA
1 TGTATCGATACAAAACTTA
792992 TGTATCGATACAAA
1 TGTATCGATACAAA
793006 TCGTTGAAAT
Statistics
Matches: 39, Mismatches: 1, Indels: 12
0.75 0.02 0.23
Matches are distributed among these distances:
13 11 0.28
14 1 0.03
16 2 0.05
18 1 0.03
19 24 0.62
ACGTcount: A:0.38, C:0.17, G:0.12, T:0.32
Consensus pattern (19 bp):
TGTATCGATACAAAACTTA
Found at i:792974 original size:32 final size:32
Alignment explanation
Indices: 792933--793003 Score: 133
Period size: 32 Copynumber: 2.2 Consensus size: 32
792923 AGCTTCGTAG
792933 CGATACATTGTATCGATACAAAACTTATGTAT
1 CGATACATTGTATCGATACAAAACTTATGTAT
*
792965 CGATACATTGTATCGATACAACACTTATGTAT
1 CGATACATTGTATCGATACAAAACTTATGTAT
792997 CGATACA
1 CGATACA
793004 AATCGTTGAA
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 38 1.00
ACGTcount: A:0.37, C:0.18, G:0.13, T:0.32
Consensus pattern (32 bp):
CGATACATTGTATCGATACAAAACTTATGTAT
Found at i:793900 original size:43 final size:44
Alignment explanation
Indices: 793824--794143 Score: 333
Period size: 49 Copynumber: 7.0 Consensus size: 44
793814 ATGTTAAAGA
* * *
793824 TGCCAATATGCTGATTCACA-ACCAACGATATTGGGCTT-GAAGG
1 TGCCAATATGCTGATTCA-AGGCCAGCGATATTGGACTTAGAAGG
* * *
793867 TGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGACAAAGG
1 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT--AG---AAGG
793916 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT-GAAGG
1 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAGAAGG
* * * *
793959 TGCCAATGTGCTGATTCAAGGCCAGTGACATTGGTCTTACAGACAAAGG
1 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT--AG---AAGG
*
794008 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTA-AAGA
1 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAGAAGG
* *
794051 TGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATAAAGG
1 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT--AG---AAGG
* *
794100 TGCCAATATGTTGATTCAAGGCCAGCGATATTGGGCTTAGAAGG
1 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAGAAGG
794144 GTTGCCACCG
Statistics
Matches: 234, Mismatches: 24, Indels: 37
0.79 0.08 0.13
Matches are distributed among these distances:
42 1 0.00
43 108 0.46
44 4 0.02
45 1 0.00
46 3 0.01
47 3 0.01
49 114 0.49
ACGTcount: A:0.30, C:0.19, G:0.26, T:0.25
Consensus pattern (44 bp):
TGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAGAAGG
Found at i:793935 original size:49 final size:48
Alignment explanation
Indices: 793863--794138 Score: 347
Period size: 49 Copynumber: 5.9 Consensus size: 48
793853 ATTGGGCTTG
* *
793863 AAGGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGACA
1 AAGGTGCCAATATGCTGATTCAAGGCCAGCGACATTGGACTTAAAGA-A
*
793912 AAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT---G--
1 AAGGTGCCAATATGCTGATTCAAGGCCAGCGACATTGGACTTAAAGAA
* * * *
793955 AAGGTGCCAATGTGCTGATTCAAGGCCAGTGACATTGGTCTTACAGACA
1 AAGGTGCCAATATGCTGATTCAAGGCCAGCGACATTGGACTTAAAGA-A
*
794004 AAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAG--
1 AAGGTGCCAATATGCTGATTCAAGGCCAGCGACATTGGACTTAAAGAA
*
794050 -A--TGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATA
1 AAGGTGCCAATATGCTGATTCAAGGCCAGCGACATTGGACTTAAAGA-A
* * *
794096 AAGGTGCCAATATGTTGATTCAAGGCCAGCGATATTGGGCTTA
1 AAGGTGCCAATATGCTGATTCAAGGCCAGCGACATTGGACTTA
794139 GAAGGGTTGC
Statistics
Matches: 197, Mismatches: 18, Indels: 24
0.82 0.08 0.10
Matches are distributed among these distances:
43 78 0.40
45 1 0.01
46 2 0.01
47 1 0.01
49 115 0.58
ACGTcount: A:0.30, C:0.19, G:0.26, T:0.25
Consensus pattern (48 bp):
AAGGTGCCAATATGCTGATTCAAGGCCAGCGACATTGGACTTAAAGAA
Found at i:793945 original size:92 final size:92
Alignment explanation
Indices: 793728--794143 Score: 519
Period size: 92 Copynumber: 4.4 Consensus size: 92
793718 CGAAGAATGA
* * * * **
793728 CAATGTGCTGATTCATGGCCAGCGACATTGGACTTGAAGAAGAATGCCAATGTGTTGAGACAAGG
1 CAATATGCTGATTCAAGGCCAGCGATATTGGACTTGAAG--G--TGCCAATGTGCTGATTCAAGG
* ** * * ** *
793793 TCAAAGACTTTGGGCTTAGGAATGTTAAAGATGC
62 CCAGCGACATTGGTCTTA--AA-GACAAAGGTGC
* * *
793827 CAATATGCTGATTCACA-ACCAACGATATTGGGCTTGAAGGTGCCAATGTGCTGATTCAAGGCCA
1 CAATATGCTGATTCA-AGGCCAGCGATATTGGACTTGAAGGTGCCAATGTGCTGATTCAAGGCCA
793891 GCGACATTGGTCTTAAAGACAAAGGTGC
65 GCGACATTGGTCTTAAAGACAAAGGTGC
793919 CAATATGCTGATTCAAGGCCAGCGATATTGGACTTGAAGGTGCCAATGTGCTGATTCAAGGCCAG
1 CAATATGCTGATTCAAGGCCAGCGATATTGGACTTGAAGGTGCCAATGTGCTGATTCAAGGCCAG
* *
793984 TGACATTGGTCTTACAGACAAAGGTGC
66 CGACATTGGTCTTAAAGACAAAGGTGC
* *
794011 CAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGCCAATGTGCTGATTCAAGGCCAG
1 CAATATGCTGATTCAAGGCCAGCGATATTGGACTTGAAGGTGCCAATGTGCTGATTCAAGGCCAG
* *
794076 CGACATTGGACTTAAAGATAAAGGTGC
66 CGACATTGGTCTTAAAGACAAAGGTGC
* *
794103 CAATATGTTGATTCAAGGCCAGCGATATTGGGCTTAGAAGG
1 CAATATGCTGATTCAAGGCCAGCGATATTGGACTT-GAAGG
794144 GTTGCCACCG
Statistics
Matches: 282, Mismatches: 32, Indels: 12
0.87 0.10 0.04
Matches are distributed among these distances:
91 1 0.00
92 212 0.75
93 5 0.02
95 31 0.11
97 1 0.00
99 32 0.11
ACGTcount: A:0.31, C:0.18, G:0.27, T:0.25
Consensus pattern (92 bp):
CAATATGCTGATTCAAGGCCAGCGATATTGGACTTGAAGGTGCCAATGTGCTGATTCAAGGCCAG
CGACATTGGTCTTAAAGACAAAGGTGC
Found at i:794182 original size:33 final size:33
Alignment explanation
Indices: 794138--794216 Score: 124
Period size: 33 Copynumber: 2.4 Consensus size: 33
794128 TATTGGGCTT
*
794138 AGAAGGGTTGCCACCGACTTGTGTGGGCTTTAG
1 AGAAGGGTTGCCACCGACTTCTGTGGGCTTTAG
*
794171 AGAATGGTTGCCACCGACTTCTGTGGGCTTTAG
1 AGAAGGGTTGCCACCGACTTCTGTGGGCTTTAG
*
794204 A-AGGGGTTGCCAC
1 AGAAGGGTTGCCAC
794217 GGGGTTGTGG
Statistics
Matches: 42, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
32 10 0.24
33 32 0.76
ACGTcount: A:0.19, C:0.20, G:0.34, T:0.27
Consensus pattern (33 bp):
AGAAGGGTTGCCACCGACTTCTGTGGGCTTTAG
Found at i:794282 original size:34 final size:34
Alignment explanation
Indices: 794211--794592 Score: 295
Period size: 34 Copynumber: 11.7 Consensus size: 34
794201 TAGAAGGGGT
* *
794211 TGCCACGGGGTTGTGGAC-TT-AAAAGGAAAAGG
1 TGCCACGGAGTTGTGGACTTTGAAAAGAAAAAGG
*
794243 ATGCCACAGAGTTGTGGACTTTGAAAAGAAAAAGG
1 -TGCCACGGAGTTGTGGACTTTGAAAAGAAAAAGG
* * *
794278 TGCCATGGAGTTGTGGACTTAG-AAGGAAAAAGAG
1 TGCCACGGAGTTGTGGACTTTGAAAAGAAAAAG-G
* * *
794312 TGCCACGGAGTTGTGGGCTTTAAAAAGAAAAATG
1 TGCCACGGAGTTGTGGACTTTGAAAAGAAAAAGG
* * *
794346 TGCCATGGAGTTGTGGACTTAG-AAGGAAAAAGAG
1 TGCCACGGAGTTGTGGACTTTGAAAAGAAAAAG-G
* * *
794380 TGCCACGGAGTTGTGGGC-TT-AAATGAAAAAAG
1 TGCCACGGAGTTGTGGACTTTGAAAAGAAAAAGG
* * * *
794412 TGCCACGGAGTTGTTGACTTAG-AAGGAAAAAAG
1 TGCCACGGAGTTGTGGACTTTGAAAAGAAAAAGG
*
794445 TGCCACGGAGTTGTGGGC-TT-AAAAG-----GG
1 TGCCACGGAGTTGTGGACTTTGAAAAGAAAAAGG
794472 TGCCACGGAGTTGTGGAC-TT-AAAAGGAAAAAGAG
1 TGCCACGGAGTTGTGGACTTTGAAAA-GAAAAAG-G
* *
794506 TGCCACGGAGTTGTGGGCTTTG--CAG-AAAAGG
1 TGCCACGGAGTTGTGGACTTTGAAAAGAAAAAGG
** *
794537 ATGCCACTAAGTCGTGGACTTTG--AAG-AAAAGG
1 -TGCCACGGAGTTGTGGACTTTGAAAAGAAAAAGG
** *
794569 ATGCCACTAAGTCGTGGACTTTGA
1 -TGCCACGGAGTTGTGGACTTTGA
794593 GACAAAATGC
Statistics
Matches: 288, Mismatches: 41, Indels: 40
0.78 0.11 0.11
Matches are distributed among these distances:
27 24 0.08
28 1 0.00
31 1 0.00
32 75 0.26
33 71 0.25
34 95 0.33
35 21 0.07
ACGTcount: A:0.33, C:0.13, G:0.33, T:0.21
Consensus pattern (34 bp):
TGCCACGGAGTTGTGGACTTTGAAAAGAAAAAGG
Found at i:794338 original size:68 final size:67
Alignment explanation
Indices: 794211--794526 Score: 443
Period size: 68 Copynumber: 4.8 Consensus size: 67
794201 TAGAAGGGGT
* * * * *
794211 TGCCACGGGGTTGTGGACTTAAAAGGAAAAGGA-TGCCACAGAGTTGTGGACTTTGAAAAGAAAA
1 TGCCACGGAGTTGTGGACTTAGAAGGAAAAAGAGTGCCACGGAGTTGTGGGCTTT-AAAAGAAAA
794275 AGG
65 AGG
*
794278 TGCCATGGAGTTGTGGACTTAGAAGGAAAAAGAGTGCCACGGAGTTGTGGGCTTTAAAAAGAAAA
1 TGCCACGGAGTTGTGGACTTAGAAGGAAAAAGAGTGCCACGGAGTTGTGGGCTTT-AAAAGAAAA
*
794343 ATG
65 AGG
* *
794346 TGCCATGGAGTTGTGGACTTAGAAGGAAAAAGAGTGCCACGGAGTTGTGGGC-TTAAATGAAAAA
1 TGCCACGGAGTTGTGGACTTAGAAGGAAAAAGAGTGCCACGGAGTTGTGGGCTTTAAAAGAAAAA
*
794410 AG
66 GG
*
794412 TGCCACGGAGTTGTTGACTTAGAAGGAAAAA-AGTGCCACGGAGTTGTGGGC-TTAAAAG-----
1 TGCCACGGAGTTGTGGACTTAGAAGGAAAAAGAGTGCCACGGAGTTGTGGGCTTTAAAAGAAAAA
794470 GG
66 GG
*
794472 TGCCACGGAGTTGTGGACTTAAAAGGAAAAAGAGTGCCACGGAGTTGTGGGCTTT
1 TGCCACGGAGTTGTGGACTTAGAAGGAAAAAGAGTGCCACGGAGTTGTGGGCTTT
794527 GCAGAAAAGG
Statistics
Matches: 230, Mismatches: 16, Indels: 11
0.89 0.06 0.04
Matches are distributed among these distances:
60 30 0.13
61 20 0.09
62 2 0.01
65 26 0.11
66 39 0.17
67 31 0.13
68 82 0.36
ACGTcount: A:0.33, C:0.12, G:0.34, T:0.22
Consensus pattern (67 bp):
TGCCACGGAGTTGTGGACTTAGAAGGAAAAAGAGTGCCACGGAGTTGTGGGCTTTAAAAGAAAAA
GG
Found at i:794476 original size:27 final size:27
Alignment explanation
Indices: 794444--794497 Score: 99
Period size: 27 Copynumber: 2.0 Consensus size: 27
794434 AAGGAAAAAA
*
794444 GTGCCACGGAGTTGTGGGCTTAAAAGG
1 GTGCCACGGAGTTGTGGACTTAAAAGG
794471 GTGCCACGGAGTTGTGGACTTAAAAGG
1 GTGCCACGGAGTTGTGGACTTAAAAGG
794498 AAAAAGAGTG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.24, C:0.15, G:0.39, T:0.22
Consensus pattern (27 bp):
GTGCCACGGAGTTGTGGACTTAAAAGG
Found at i:794557 original size:126 final size:126
Alignment explanation
Indices: 794192--794575 Score: 422
Period size: 126 Copynumber: 3.0 Consensus size: 126
794182 CACCGACTTC
* * * *
794192 TGTGGGCTTTAGAAGGGGTTGCCACGGGGTTGTGGACTTAAAAGGAAAAGGA-TGCCACAGAGTT
1 TGTGGGCTTTA-AAAGGG-TGCCACGGAGTTGTGGACTTAAAAGGAAAAAGAGTGCCACGGAGTT
*
794256 GTGGACTTTGAAAAGAAAAAGGTGCCA-TGGAGTTGTGGACTTAGAAGGAAAAAGAGTGCCACGG
64 GTGGGCTTTG---AG-AAAAGGTGCCACT-GAGTTGTGGACTTAGAAGGAAAAAGAGTGCCACGG
794320 AGT
124 AGT
* * *
794323 TGTGGGCTTTAAAAAGAAAAATGTGCCATGGAGTTGTGGACTTAGAAGGAAAAAGAGTGCCACGG
1 TGTGGGCTTT-AAAAG-----GGTGCCACGGAGTTGTGGACTTAAAAGGAAAAAGAGTGCCACGG
* * *
794388 AGTTGTGGGCTTAAATGA-AAAAAGTGCCACGGAGTTGTTGACTTAGAAGGAAAAA-AGTGCCAC
60 AGTTGTGGGCTT---TGAGAAAAGGTGCCACTGAGTTGTGGACTTAGAAGGAAAAAGAGTGCCAC
794451 GGAGT
122 GGAGT
794456 TGTGGGC-TTAAAAGGGTGCCACGGAGTTGTGGACTTAAAAGGAAAAAGAGTGCCACGGAGTTGT
1 TGTGGGCTTTAAAAGGGTGCCACGGAGTTGTGGACTTAAAAGGAAAAAGAGTGCCACGGAGTTGT
* * * *
794520 GGGCTTTGCAGAAAAGGATGCCACTAAGTCGTGGACTTTGAA-GAAAAGGA-TGCCAC
66 GGGCTTTG-AGAAAAGG-TGCCACTGAGTTGTGGACTTAGAAGGAAAAAGAGTGCCAC
794576 TAAGTCGTGG
Statistics
Matches: 217, Mismatches: 21, Indels: 36
0.79 0.08 0.13
Matches are distributed among these distances:
123 2 0.01
124 1 0.00
125 16 0.07
126 73 0.34
131 18 0.08
132 3 0.01
133 20 0.09
134 33 0.15
135 29 0.13
136 20 0.09
139 2 0.01
ACGTcount: A:0.33, C:0.12, G:0.34, T:0.21
Consensus pattern (126 bp):
TGTGGGCTTTAAAAGGGTGCCACGGAGTTGTGGACTTAAAAGGAAAAAGAGTGCCACGGAGTTGT
GGGCTTTGAGAAAAGGTGCCACTGAGTTGTGGACTTAGAAGGAAAAAGAGTGCCACGGAGT
Found at i:794576 original size:32 final size:30
Alignment explanation
Indices: 794499--794656 Score: 156
Period size: 32 Copynumber: 5.1 Consensus size: 30
794489 CTTAAAAGGA
** * *
794499 AAAAGAGTGCCACGGAGTTGTGGGCTTTGCAG
1 AAAAGA-TGCCACTAAGTCGTGGACTTTG-AG
794531 AAAAGGATGCCACTAAGTCGTGGACTTTGAAG
1 AAAA-GATGCCACTAAGTCGTGGACTTTG-AG
794563 AAAAGGATGCCACTAAGTCGTGGACTTTGAG
1 AAAA-GATGCCACTAAGTCGTGGACTTTGAG
* *
794594 ACAAA-ATGCCACTAAGTCATGGGCTTTGAG
1 A-AAAGATGCCACTAAGTCGTGGACTTTGAG
* * * *
794624 AAGAGATTGCCACTGAGTCATGGACTTTAAG
1 AAAAGA-TGCCACTAAGTCGTGGACTTTGAG
794655 AA
1 AA
794657 GGTATTTGGA
Statistics
Matches: 111, Mismatches: 11, Indels: 9
0.85 0.08 0.07
Matches are distributed among these distances:
29 2 0.02
30 25 0.23
31 26 0.23
32 56 0.50
33 2 0.02
ACGTcount: A:0.32, C:0.16, G:0.28, T:0.23
Consensus pattern (30 bp):
AAAAGATGCCACTAAGTCGTGGACTTTGAG
Found at i:794643 original size:31 final size:31
Alignment explanation
Indices: 794523--794656 Score: 157
Period size: 32 Copynumber: 4.3 Consensus size: 31
794513 GAGTTGTGGG
*
794523 CTTTGCAGAAAAGGATGCCACTAAGTCGTGGA
1 CTTTG-AGAAAAGGATGCCACTAAGTCATGGA
*
794555 CTTTGAAGAAAAGGATGCCACTAAGTCGTGGA
1 CTTTG-AGAAAAGGATGCCACTAAGTCATGGA
*
794587 CTTTGAGACAAA--ATGCCACTAAGTCATGGG
1 CTTTGAGA-AAAGGATGCCACTAAGTCATGGA
* *
794617 CTTTGAGAAGA-GATTGCCACTGAGTCATGGA
1 CTTTGAGAAAAGGA-TGCCACTAAGTCATGGA
*
794648 CTTTAAGAA
1 CTTTGAGAA
794657 GGTATTTGGA
Statistics
Matches: 92, Mismatches: 7, Indels: 7
0.87 0.07 0.07
Matches are distributed among these distances:
29 2 0.02
30 25 0.27
31 26 0.28
32 39 0.42
ACGTcount: A:0.33, C:0.17, G:0.26, T:0.24
Consensus pattern (31 bp):
CTTTGAGAAAAGGATGCCACTAAGTCATGGA
Found at i:794657 original size:31 final size:30
Alignment explanation
Indices: 794536--794657 Score: 129
Period size: 31 Copynumber: 4.0 Consensus size: 30
794526 TGCAGAAAAG
* *
794536 GATGCCACTAAGTCGTGGACTTTGAAGAAAA
1 GATGCCACTAAGTCATGGACTTT-AAGAAGA
* *
794567 GGATGCCACTAAGTCGTGGACTTTGAGACA-A
1 -GATGCCACTAAGTCATGGACTTTAAGA-AGA
* * *
794598 AATGCCACTAAGTCATGGGCTTTGAGAAGA
1 GATGCCACTAAGTCATGGACTTTAAGAAGA
*
794628 GATTGCCACTGAGTCATGGACTTTAAGAAG
1 GA-TGCCACTAAGTCATGGACTTTAAGAAG
794658 GTATTTGGAG
Statistics
Matches: 79, Mismatches: 8, Indels: 7
0.84 0.09 0.07
Matches are distributed among these distances:
29 1 0.01
30 26 0.33
31 28 0.35
32 24 0.30
ACGTcount: A:0.32, C:0.17, G:0.27, T:0.24
Consensus pattern (30 bp):
GATGCCACTAAGTCATGGACTTTAAGAAGA
Found at i:795966 original size:24 final size:24
Alignment explanation
Indices: 795939--796003 Score: 76
Period size: 24 Copynumber: 2.7 Consensus size: 24
795929 TTTACACTCC
* *
795939 TTTTTTTTTATTTTTTGTTGTTGT
1 TTTTTTTTTATTTTTTGTTCTTCT
* *
795963 TTTTTTTTTCTTTTTTTTTCTTCT
1 TTTTTTTTTATTTTTTGTTCTTCT
*
795987 TTTTTTTATCATTTTTT
1 TTTTTTT-TTATTTTTT
796004 TAAGGGAACT
Statistics
Matches: 34, Mismatches: 6, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
24 27 0.79
25 7 0.21
ACGTcount: A:0.05, C:0.06, G:0.05, T:0.85
Consensus pattern (24 bp):
TTTTTTTTTATTTTTTGTTCTTCT
Found at i:795978 original size:13 final size:13
Alignment explanation
Indices: 795939--795993 Score: 58
Period size: 13 Copynumber: 4.2 Consensus size: 13
795929 TTTACACTCC
*
795939 TTTTTTT-TTATT
1 TTTTTTTCTTTTT
* *
795951 TTTTGTTGTTGTTT
1 TTTTTTTCTT-TTT
795965 TTTTTTTCTTTTT
1 TTTTTTTCTTTTT
*
795978 TTTTCTTCTTTTT
1 TTTTTTTCTTTTT
795991 TTT
1 TTT
795994 ATCATTTTTT
Statistics
Matches: 36, Mismatches: 5, Indels: 3
0.82 0.11 0.07
Matches are distributed among these distances:
12 6 0.17
13 20 0.56
14 10 0.28
ACGTcount: A:0.02, C:0.05, G:0.05, T:0.87
Consensus pattern (13 bp):
TTTTTTTCTTTTT
Found at i:796002 original size:13 final size:11
Alignment explanation
Indices: 795939--796004 Score: 60
Period size: 12 Copynumber: 5.5 Consensus size: 11
795929 TTTACACTCC
*
795939 TTTTTTTTTAT
1 TTTTTTTTTCT
*
795950 TTTTTGTTGTTGT
1 TTTTT-TT-TTCT
795963 TTTTTTTTTCTT
1 TTTTTTTTTC-T
795975 TTTTTTTCTTCT
1 TTTTTTT-TTCT
*
795987 TTTTTTTATCAT
1 TTTTTTTTTC-T
795999 TTTTTT
1 TTTTTT
796005 AAGGGAACTC
Statistics
Matches: 47, Mismatches: 3, Indels: 9
0.80 0.05 0.15
Matches are distributed among these distances:
11 9 0.19
12 27 0.57
13 11 0.23
ACGTcount: A:0.05, C:0.06, G:0.05, T:0.85
Consensus pattern (11 bp):
TTTTTTTTTCT
Found at i:803044 original size:52 final size:52
Alignment explanation
Indices: 802895--803023 Score: 231
Period size: 52 Copynumber: 2.5 Consensus size: 52
802885 CGAAATATGA
802895 AAATTTGCCTGCATGTATCGATACATTTCATAGTGTATCGATACATCTGGGC
1 AAATTTGCCTGCATGTATCGATACATTTCATAGTGTATCGATACATCTGGGC
** *
802947 AAATTTGCCTATATGTATCGACACATTTCATAGTGTATCGATACATCTGGGC
1 AAATTTGCCTGCATGTATCGATACATTTCATAGTGTATCGATACATCTGGGC
802999 AAATTTGCCTGCATGTATCGATACA
1 AAATTTGCCTGCATGTATCGATACA
803024 AAGATCGGTG
Statistics
Matches: 71, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
52 71 1.00
ACGTcount: A:0.29, C:0.19, G:0.18, T:0.34
Consensus pattern (52 bp):
AAATTTGCCTGCATGTATCGATACATTTCATAGTGTATCGATACATCTGGGC
Found at i:803120 original size:19 final size:19
Alignment explanation
Indices: 803096--803147 Score: 95
Period size: 19 Copynumber: 2.7 Consensus size: 19
803086 AGCGATACAT
803096 TGTATCGATACAAAACTTA
1 TGTATCGATACAAAACTTA
*
803115 TGTATCGATACAACACTTA
1 TGTATCGATACAAAACTTA
803134 TGTATCGATACAAA
1 TGTATCGATACAAA
803148 TCGTTGAAAT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 31 1.00
ACGTcount: A:0.40, C:0.17, G:0.12, T:0.31
Consensus pattern (19 bp):
TGTATCGATACAAAACTTA
Found at i:804212 original size:13 final size:13
Alignment explanation
Indices: 804194--804237 Score: 54
Period size: 14 Copynumber: 3.2 Consensus size: 13
804184 TTGATGTAAG
804194 AAAGAAGAAGAAA
1 AAAGAAGAAGAAA
804207 AAAGAAAGGAAG-AA
1 AAAG-AA-GAAGAAA
804221 AAAGAAGAAGGAAA
1 AAAGAAGAA-GAAA
804235 AAA
1 AAA
804238 AATTTGAGTG
Statistics
Matches: 27, Mismatches: 0, Indels: 7
0.79 0.00 0.21
Matches are distributed among these distances:
12 3 0.11
13 7 0.26
14 13 0.48
15 4 0.15
ACGTcount: A:0.75, C:0.00, G:0.25, T:0.00
Consensus pattern (13 bp):
AAAGAAGAAGAAA
Found at i:806031 original size:81 final size:81
Alignment explanation
Indices: 805773--806292 Score: 423
Period size: 81 Copynumber: 6.4 Consensus size: 81
805763 TCATTAATGT
* * * * * *
805773 TTTC-TAGGGATACTCCAACACCATTTTTACCCCTAAAATAAAACAAATCAAAATTTCCATTTTT
1 TTTCTTAGGGATACTCCAACCCCATTTTTACCTCT---A-AAAA-ATATCAAAATTTTCAATTTC
* *
805837 GGGAATACTCCAACCCCACCG
61 GGGGATACTCCAACCCCACCA
* *** ** * ** *
805858 TCTTC-GAGGGGATACT-CTGGCCCATTTTTTTCTCTAAAAAAAAT--TTATTTTCCATCTTCGG
1 T-TTCTTA-GGGATACTCCAACCCCATTTTTACCTCTAAAAAATATCAAAATTTTCAAT-TTCGG
*
805919 GGATACTCCAACCCCGCCA
63 GGATACTCCAACCCCACCA
* *
805938 TCTCTGAAGGGATACTCCAACCCCATTTTTACCTCTAAAAAATATCAAAATTTTCAATTTCGGGG
1 TTTCT-TAGGGATACTCCAACCCCATTTTTACCTCTAAAAAATATCAAAATTTTCAATTTCGGGG
806003 ATACTCCAACCCCACCA
65 ATACTCCAACCCCACCA
* * * * * * *
806020 TTTCTTAGGGATACTTCAACCCCGTTTTTACTTTTAAAAAATATCCAATTTTTC-ATCTTCAGGG
1 TTTCTTAGGGATACTCCAACCCCATTTTTACCTCTAAAAAATATCAAAATTTTCAAT-TTCGGGG
*
806084 ATACTCCAACCCCGCCA
65 ATACTCCAACCCCACCA
* ** * * *
806101 TTTCTGAGGGGATACTCCAACCCGGTTTTTACCTCT-AAAAA-ATCAAAATTTTCATTTTTGGAG
1 TTTCTTA-GGGATACTCCAACCCCATTTTTACCTCTAAAAAATATCAAAATTTTCAATTTCGGGG
* *
806164 ATGCTGCAACCCCACCA
65 ATACTCCAACCCCACCA
* * **
806181 TTTCTTAGAGGATACTCCAACCCAATTTTTACTTCT-AAAAATA-CCCAATTTTCAAGCTTT-GG
1 TTTCTTAG-GGATACTCCAACCCCATTTTTACCTCTAAAAAATATCAAAATTTTCAA--TTTCGG
*
806243 GGATACTCCAACCCCGCCA
63 GGATACTCCAACCCCACCA
* **
806262 TCTCCAAAGGGATACTCCAACCCCATTTTTA
1 T-TTCTTAGGGATACTCCAACCCCATTTTTA
806293 TTTTTAAAAA
Statistics
Matches: 351, Mismatches: 68, Indels: 36
0.77 0.15 0.08
Matches are distributed among these distances:
79 9 0.03
80 103 0.29
81 143 0.41
82 62 0.18
83 9 0.03
85 1 0.00
86 16 0.05
87 8 0.02
ACGTcount: A:0.30, C:0.28, G:0.11, T:0.31
Consensus pattern (81 bp):
TTTCTTAGGGATACTCCAACCCCATTTTTACCTCTAAAAAATATCAAAATTTTCAATTTCGGGGA
TACTCCAACCCCACCA
Found at i:806248 original size:161 final size:163
Alignment explanation
Indices: 805904--806292 Score: 543
Period size: 161 Copynumber: 2.4 Consensus size: 163
805894 AAAAAAATTT
* *
805904 ATTTTCCATCTTCGGGGATACTCCAACCCCGCCATCTCTGAAGGGATACTCCAACCCCATTTTTA
1 ATTTTTCAGCTTCGGGGATACTCCAACCCCGCCATCTCTGAAGGGATACTCCAACCCCATTTTTA
*
805969 CCTCTAAAAAATATCAAAATTTTCAATTTCGGGGATACTCCAACCCCACCATTTCTTAGGGATAC
66 CCTCTAAAAAATATCAAAATTTTCAATTTCGGAGATACTCCAACCCCACCATTTCTTAGGGATAC
* ** * *
806034 TTCAACCCCGTTTTTACTTTTAAAAAATATCCA
131 TCCAACCCAATTTTTACTTCTAAAAAATACCCA
* * * * **
806067 ATTTTTCATCTTCAGGGATACTCCAACCCCGCCATTTCTGAGGGGATACTCCAACCCGGTTTTTA
1 ATTTTTCAGCTTCGGGGATACTCCAACCCCGCCATCTCTGAAGGGATACTCCAACCCCATTTTTA
* * * *
806132 CCTCT-AAAAA-ATCAAAATTTTCATTTTTGGAGATGCTGCAACCCCACCATTTCTTAGAGGATA
66 CCTCTAAAAAATATCAAAATTTTCAATTTCGGAGATACTCCAACCCCACCATTTCTTAG-GGATA
806195 CTCCAACCCAATTTTTACTTCT-AAAAATACCCA
130 CTCCAACCCAATTTTTACTTCTAAAAAATACCCA
* **
806228 A-TTTTCAAGCTTTGGGGATACTCCAACCCCGCCATCTCCAAAGGGATACTCCAACCCCATTTTT
1 ATTTTTC-AGCTTCGGGGATACTCCAACCCCGCCATCTCTGAAGGGATACTCCAACCCCATTTTT
806292 A
65 A
806293 TTTTTAAAAA
Statistics
Matches: 199, Mismatches: 25, Indels: 6
0.87 0.11 0.03
Matches are distributed among these distances:
160 5 0.03
161 102 0.51
162 28 0.14
163 64 0.32
ACGTcount: A:0.29, C:0.29, G:0.12, T:0.31
Consensus pattern (163 bp):
ATTTTTCAGCTTCGGGGATACTCCAACCCCGCCATCTCTGAAGGGATACTCCAACCCCATTTTTA
CCTCTAAAAAATATCAAAATTTTCAATTTCGGAGATACTCCAACCCCACCATTTCTTAGGGATAC
TCCAACCCAATTTTTACTTCTAAAAAATACCCA
Found at i:809208 original size:474 final size:473
Alignment explanation
Indices: 807309--813605 Score: 7010
Period size: 474 Copynumber: 13.3 Consensus size: 473
807299 ATGTTGCGAC
* * *
807309 ACACGATATTAATGCTTTGGTTTCGTAAG-AAGAGCTTTTTCCCTACCAATTTTTGTAAACTCTA
1 ACACGATATTGATGCTTTGGTTTCGCAAGAAAG-GCTTTTTCCC-ACCAATTTTTGTAAAGTCTA
* * * * * * *
807373 AGTTCAT-CTGTTAAATGAGAGAAACATTGATTTTAGTAATGATCTTCTTTCACTTTATGATTAG
64 AGTTCGTGC-CTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCTTTCATTTTATGATTAG
* * *
807437 GCACTATCAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTACATGAAAATC
128 GCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATC
* * * * * *
807502 TTTTGTTTGCCCTATTTTCCTTAAAATCATATTTCATCTCTTAATTAAGACAAGCATCGATTCTT
193 TTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTC
* ** * * ** *
807567 GTAACCT-TTC-CCACCCTTTTCAAGATT-AGGAAGCAAAAAAACATTCCCTTCATTAAAATATA
258 GTAA--TAGTCTCCATTCTTTTCAAGATTGA-GAACCAAAAACA-ATTCCCTTCATTAGGATACA
* *
807629 TGACATTGATGCTTTGGTGTCACAAGAAAACCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGT
319 TGACATTGATGCTTTGGTGTCA-AAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGT
* ** * * *
807694 TTCTCTCTTAAATAAGACAAACATGAATACTGGTAGTAATCCTCATTCTTTTCAGGATTAGGTAC
383 TTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTCAGGATTAGGCAC
**
807759 CATAAACATAGTCTTCTCAGAAGGAT
448 CATAAACATAGTCTTCTCATTAGGAT
* * *
807785 ACACGATATTGATGCTTTGGTTTTGCAA-AAAGAGGTTTTTCCATACCAATTTTTGTAAAGT-TA
1 ACACGATATTGATGCTTTGGTTTCGCAAGAAAG-GCTTTTTCC-CACCAATTTTTGTAAAGTCT-
* * * * * * * *
807848 AAATCCATGCCCCAAATGAGACAAACATGGATTCCAATAATGATCTTCTTTCATTTAATTATTAG
63 AAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCTTTCATTTTATGATTAG
* * *
807913 GCACTATAAACACATTCTCCTCATTAGGATAATTGATATTGATGATTTTTTTTTTGCATGAAAAT
128 GCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGA-TTTTCTTTTGCATGGAAAT
* * * * * * * *
807978 CTTTTCTTTTCCTTATTTTCCATAAAAGCAAATTTCATCCTTTAAATAAGACAAGCATCAACTCT
192 CTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCT
** * * * * ** * *
808043 TATAACAGTCTCCATTCTTTTTAAGATTGGGAACCTAAAACACATTCCCTTTGTTAGGGTAAATG
257 CGTAATAGTCTCCATTCTTTTCAAGATTGAGAACCAAAAACA-ATTCCCTTCATTAGGATACATG
* * * *
808108 ACATTGATGCTTTAGTGTCGCAAGAAAAG-TCTTTCTTTTCACCATTTTTGATAGAATCAAAGTG
321 ACATTGATGCTTTGGTGTC-AAAGAAAAGCT-TTTCTTTCCACCATTTTTGATAGAATCAAAGTT
* * * * *
808172 TCTCTCTTAATTAAAACAAACATGAATACTCATACTAATCCTCATTCTTTTTAGGATTAGGCACC
384 TGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTCAGGATTAGGCACC
* * *
808237 GTAAACATAGTTTTCTCATTAGAAT
449 ATAAACATAGTCTTCTCATTAGGAT
*** * * * *
808262 ATGTGATATTGAAGTTTTGGTTTCACAAGAAAGGTATTTTTCCCACCAATTTTTGTAAAGTCTAA
1 ACACGATATTGATGCTTTGGTTTCGCAAGAAAGG-CTTTTTCCCACCAATTTTTGTAAAGTCTAA
* * * * *
808327 GTTTGTGCCTCAAATAAGATAAACTTGGATTCTAGTAATGATCTTCATTCATTTTGA-GATTAGG
65 GTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCTTTCATTTT-ATGATTAGG
* * * *
808391 CACTATAATCACATTATCCTCATTAGGATAAATGATATTGTTGATTTTCTTTTGCATGTAAATCT
129 CACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCT
* * * * * *
808456 TTTCCTTACCCTTTTTTTCTTAAAATCAATGTTCATCCCTTAAATAAGACATGCATCGATTCTCG
194 TTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCG
* * * * * **
808521 TAAAAGTCCCCATTCTTTTCAAGACTGGGAACCAAAAACACATTCTCTTCATTAGGATACACAAC
259 TAATAGTCTCCATTCTTTTCAAGATTGAGAACCAAAAACA-ATTCCCTTCATTAGGATACATGAC
* * * *
808586 ATTTATGCTTT-GTGTTGAAAGAAAAGCTTTTCCTTCCACCGTTTTTGATAGAATCAAAGTTTGT
323 ATTGATGCTTTGGTG-TCAAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGT
* * * *
808650 CTCGTAAATAAGACAAACATGAATACTCATAGTAATCCTCATTCTTTTCAGGATTAGGAACCATA
387 CTCTTAAATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATA
* *
808715 AACATAGTTTTTTCATTAGGAT
452 AACATAGTCTTCTCATTAGGAT
* * *
808737 ACACGATATTGATGCCTTGGTTTCCCAAGAAATGCTTTTTCCCAACCAATTTTTGTAACA-TCTA
1 ACACGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTCCC-ACCAATTTTTGTAA-AGTCTA
* * *
808801 AGTTCGTGCCTTAAATGAGACAAACATGGATTCCACTAATGATCTTCTTTCATTTTATGATTAGG
64 AGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCTTTCATTTTATGATTAGG
* *
808866 CACTATAAACACATTCTCCTTATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATAT
129 CACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCT
* * ** *
808931 TTTTTTTGCCTTATTTTTGTTAAAATCTATA-TTCATCCCTTAAA-AAGACAAGCATC-ATTTCT
194 TTTCTTTGCCCTATTTTCCTTAAAATC-AAAGTTCATCCCTTAAATAAGACAAGCATCGA-TTCT
* * * * * *
808993 CGTAATAGCCTCTATTCTTTTCAAGACT-ACAAACAAAACACAATTTCCCTTCATTAGCATACAT
257 CGTAATAGTCTCCATTCTTTTCAAGATTGAGAACCAAAA-ACAA-TTCCCTTCATTAGGATACAT
* * * * * *
809057 GACATTAATGCTTTAGTGTCAAAGAAAAGCCTTTCTTTCTAGCATTTTTGATAGAATCAATGTTT
320 GACATTGATGCTTTGGTGTCAAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTT
* * * *
809122 GTCTCTTAAATAAGACAAACATGAATAGTCATACCAATCCCCTTTCTTTTTAGGATTAGGCACCA
385 GTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCA
809187 TAAACATAGTCTTCTCATTAGGAT
450 TAAACATAGTCTTCTCATTAGGAT
* *** * * * *
809211 ATACGATACCAAAGTTTTGGTTTCGCAAAAAAGGCATTTTTCCCACCAATTTTTATAAAGTCTAA
1 ACACGATATTGATGCTTTGGTTTCGCAAGAAAGGC-TTTTTCCCACCAATTTTTGTAAAGTCTAA
* * * * * *
809276 GTACGTGCCTTAAATAAGACAAACTTTGATTCTAGCAATGATCTTCTTTCATTTTATGATTAGGC
65 GTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCTTTCATTTTATGATTAGGC
* * *
809341 ACTATAAACACATTCTTCTCATTAGGATAAATGATATTGATGATTTCCTTTTGCTTGGAAATCTT
130 ACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTT
* * * * * **
809406 TTCTTT-CTCGTATTTT-GTTAAAATCAAAGTTTATTCCTTAAATAGGACAAGCATCGATTCTTA
195 TTCTTTGC-CCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCG
* * ** * *
809469 TTACAGTCTCCATTCTTACCAAGATT-AGGAACCAAAAACAAGTTCACTTCATTAGGATACACGA
259 TAATAGTCTCCATTCTTTTCAAGATTGA-GAACCAAAAACAA-TTCCCTTCATTAGGATACATGA
* * * * * *
809533 CATTGATGCTTTTGTGTCGTAAGAAAAGCTTTTCTTTTCACCGTTTTTTATAGAATCAAAGTTTA
322 CATTGATGCTTTGGTGTC-AAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTG
* * * * *
809598 TCTCTTAAATAAGATAAACATGAATACTCCTACTAATCCCTATTTTTTTCATGATTAGGCACCAT
386 TCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCAT
*
809663 AAACATAGTCTTCTTATTAGGAT
451 AAACATAGTCTTCTCATTAGGAT
** * * * *
809686 ATGCGATATTGAAGTTTTGGTTTCGCAAAAAAGGCATTTTTCCCACCAATTTTTTTAAAGTCTAA
1 ACACGATATTGATGCTTTGGTTTCGCAAGAAAGGC-TTTTTCCCACCAATTTTTGTAAAGTCTAA
* * * * * *
809751 GTTCATGCCTCAAATGAGACAAACTTTGATTCTAGTAATGATCTTCATTCATTTTGTGAATAGGC
65 GTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCTTTCATTTTATGATTAGGC
* * *
809816 ACTATAATCACATTCTCCTCAATAGGATAAATGATATTGATAATTTTCTTTTGCATGGAAATC-T
130 ACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTT
*
809880 TT-TTTGCCCTATTTAT-CTTAAAATCAATGTTCATCCCTTAAATAAGACAAGCATCGATTCTCG
195 TTCTTTGCCCTATTT-TCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCG
* * * * * * **
809943 TAAAAGTCCCCACTCTTTTTAAGATTGGGAACCAAAAACATGTTCTTTTCATTAGGATACATGAC
259 TAATAGTCTCCATTCTTTTCAAGATTGAGAACCAAAAACA-ATTCCCTTCATTAGGATACATGAC
* * *
810008 TTTGATGCTTTGGTGTTGC-AAGAAAAACTTTTCTTTCCACCCTTTTTGATAGAATCAAAGTTTG
323 ATTGATGCTTTGGTG-T-CAAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTG
* * * ** * *
810072 TCTC-TAAGATAAGACAAACATGAATACTCAGAGTAATCCTCATTCTTTTCAAAATTAGGTACGA
386 TCTCTTAA-ATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCA
810136 TAAACATAGTCTTCTCATTAGGAT
450 TAAACATAGTCTTCTCATTAGGAT
* * * * ** * * *
810160 ACACGATATTGACGCCTTAGTTTCGTAAGAAAGGCTTTTAAACAACCAATTTTCGTAACGTCTAA
1 ACACGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTT-TCCCACCAATTTTTGTAAAGTCTAA
* * * *
810225 GTTCGTGCCTTAAATGAGACAAACATGGATTCCAGTAATAATCTTCTTTCATTTTATGACTAGGC
65 GTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCTTTCATTTTATGATTAGGC
* * * * *
810290 ACTATAAACACATTCTCCTTATTAGGATAAATGATATTGAAGAGTTTATTTTGCATGAAAATCTT
130 ACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTT
* * *
810355 TTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATTGATTCTTGC
195 TTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGT
* * *
810420 AATAGTCTCCATTCTTTTCAGGATTGAGAACCTAAAACACATTCTCTTCATTAGGATACATGACA
260 AATAGTCTCCATTCTTTTCAAGATTGAGAACCAAAAACA-ATTCCCTTCATTAGGATACATGACA
* * * *
810485 TTGATGCTTTGGTGGCACAAGAAAAGCTTTTTTTTTTCCACCATTTTTTATATAATCAAAGTTTG
324 TTGATGCTTTGGTGTCA-AAGAAAAGC--TTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTG
* * * * * * * *
810550 CCTCTTAATTAAGACAAGCATGAATAGTTACACTAATCCACATTCTTTTCAGGATTACGCACCAT
386 TCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCAT
*
810615 AAACGTAGTCTTCTCATTAGGAT
451 AAACATAGTCTTCTCATTAGGAT
* * * * *
810638 ACACGATATTGATGTTTTTGTTTCACAAGAAAGGCTTTTTCCCCACCAAATTTTGCAAAGTCTAA
1 ACACGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTT-CCCACCAATTTTTGTAAAGTCTAA
* * * * * * *
810703 GTTTGTACATCAAAAGAGACGAACATGAATTCTAGTAATAATCTTCTTTCATTTTATGATTAGGC
65 GTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCTTTCATTTTATGATTAGGC
* * * ** * * *
810768 AATGTAAATACATTCTCCTCAGAAGGATGAATAATATTGATGATTTTCTTTTGCATCGAAATCTT
130 ACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTT
* * *
810833 TT-TATTGCCTTATTTTCCTTAAAATCAATGTTCATCCCTTAAATAAGACAAGCTTCGATTCTCG
195 TTCT-TTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCG
** * * * * * ** *
810897 TAGCAGTCTCCATTCTTTTCAGGACTGGGAACCTAAAACACATTCCCGTCGCTAGGATACATAAC
259 TAATAGTCTCCATTCTTTTCAAGATTGAGAACCAAAAACA-ATTCCCTTCATTAGGATACATGAC
* * * * *
810962 ATTGATGCCTTGGTGTTGGAAA-AAAA-CTTTTTTTTCCACCATTTTTAATAGAATCAAAGTTTA
323 ATTGATGCTTTGGTG-T-CAAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTG
* * * * * * * * *
811025 CCTCTTGAATAAGATAAACATGAATAGTCATACTAAACCCCATACTTTTC-GAGAGTAGGCATCG
386 TCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTCAG-GATTAGGCACCA
** * *
811089 TAAATGTAGTCTTCTTATAAGGAT
450 TAAACATAGTCTTCTCATTAGGAT
* * ** *
811113 ACACAATATTGATGCCTTGGTATT-GCAAGAAAGGCTTTTTTCCTGCCAATTTTGGTAAAGTCTA
1 ACACGATATTGATGCTTTGGT-TTCGCAAGAAAGGC-TTTTTCCCACCAATTTTTGTAAAGTCTA
* * * * * * * *
811177 AG-TCTGTGACGCAAATGAGCCAAACACGAATTCTAGTATTGATCTTCATTCATTTTGTGATTAG
64 AGTTC-GTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCTTTCATTTTATGATTAG
* ** * * *
811241 GCACTATAAACACATTCTCTTCATTAGGATAAGCGGTATTGATGATTTTCTTTTGCTTGAAAATC
128 GCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATC
* * *
811306 TTTTCTTTGCCCTAATTTCTTTAAAATCAAAGTTCATCCCTTAAA-AAGATAAGCATCGAATT-T
193 TTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCG-ATTCT
* * * * * * *
811369 TGTAATAGTCTCCATTTTTTTCAACATT-AGGAACCAAAAACAAATTGCCTTTAGTAGGATACAC
257 CGTAATAGTCTCCATTCTTTTCAAGATTGA-GAACCAAAAAC-AATTCCCTTCATTAGGATACAT
* * *
811433 GACATTGATGCTTTGGTGTCGTAAGAAAAGCTTTTCTTTCC-CCTATTTTTGATAAAATCAAAGA
320 GACATTGATGCTTTGGTGTC-AAAGAAAAGCTTTTCTTTCCACC-ATTTTTGATAGAATCAAAGT
* * * *
811497 TTGCCTCTTAAATAAGACAAACATGAATACTCATACCAATCCCTATTCTTTTGAGGATTAGGCAC
383 TTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTCAGGATTAGGCAC
*
811562 CATAAACATAGTCTTCTCATTCGGAT
448 CATAAACATAGTCTTCTCATTAGGAT
* *** * * * *
811588 ACACAATATTGACATTTTGGTTTCACAAGAAAGGCATTTTTCTCACCAATTTTTCTAAAGTCAAA
1 ACACGATATTGATGCTTTGGTTTCGCAAGAAAGGC-TTTTTCCCACCAATTTTTGTAAAGTCTAA
** * * * * * *
811653 GTTCACGCCGCAAATGAGCCAAACATGGATTCTAGTATTGATCTTCATTCATTTTTTAATTAGGC
65 GTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCTTTCATTTTATGATTAGGC
* * * * *
811718 AATATAAACAAATTCTCCTCATTAGGATAAATTATATTGATTATTTTCTTTTGCATAGAAATCTT
130 ACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTT
* * * *
811783 TTCTTTGCCCTATTTTCCTTGAAATCAAAATTCATCCCTTTAA-AAGACAAGCATCGTTTCTCGT
195 TTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGT
* * ** * ** *
811847 AACAGTCTCCATTATTTTCTTGATTCGA-AACCAAAAACACATTTCCTTCATTAAAATATATGAC
260 AATAGTCTCCATTCTTTTCAAGATT-GAGAACCAAAAACA-ATTCCCTTCATTAGGATACATGAC
* * * * * *
811911 ATTGATGCTTTAGTGTCCAAGAAAAGCTCTTCTTTCAACCGTTTTTGACAGAATCAAAGTTTGTC
323 ATTGATGCTTTGGTGTCAAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTC
* ** * *
811976 TCTTAAATAAGACAAACATGAATACTCATACTATTCCCCATTCAATCCATGATTAGGCACCATAA
388 TCTTAAATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAA
*
812041 ACATAGTCTTCTCATTAGGAC
453 ACATAGTCTTCTCATTAGGAT
* ** * *
812062 ACACGATATTGATGTTTTGGTTTCGCAAGATCGGCATTTTTCCCACCAATTTTTATAAAGTCTTA
1 ACACGATATTGATGCTTTGGTTTCGCAAGAAAGGC-TTTTTCCCACCAATTTTTGTAAAGTCTAA
** * * * * *
812127 GTTTATGCCTCAAATAAGGCAAAAATGGATTCTAGTAATGA-CTTTCATTCATTGTATGATTAGG
65 GTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATC-TTCTTTCATTTTATGATTAGG
* * * *
812191 CACTATAAGCACATTCTCCTTATT-GGATGAATGATATTGATGAATTT-TTTTGC-TCGGAAATC
129 CACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCAT-GGAAATC
*
812253 TTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCCTAAATAAGACAAGCATCGATTCTC
193 TTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTC
* * * * * * *
812318 ATAATAGTCTCCATTCTTTTCATGATTGGGAACCTAAAACACATTTCCTTCGTTAGGATAGATGA
258 GTAATAGTCTCCATTCTTTTCAAGATTGAGAACCAAAAACA-ATTCCCTTCATTAGGATACATGA
* * * ** *
812383 CACTAATGCTTTGGTGTCACAAGAAAAACTTTTCTTTCCACTGTTTTTGATAAAATCAAAGTTTG
322 CATTGATGCTTTGGTGTCA-AAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTG
* * * * * * **
812448 TCTCTTAAGTAAGACAAACATGGAGACTCATATTATTCCCTATTCTTTTCAGGATTAGGTTCCAT
386 TCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCAT
*
812513 AAACATAGTCTTCTCATTAAGAT
451 AAACATAGTCTTCTCATTAGGAT
* * * * *
812536 ACACAATATTGGTGCTTTTGTTTTGCAAGAAAGGCTTTTTCCTAACCAATTTTTGTAAAGTCTAA
1 ACACGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTCC-CACCAATTTTTGTAAAGTCTAA
* * * *
812601 GTTCGTGCCTCAAATGAGACAAACTTGGATTCAAATAATGATCTTCTTTCATTTTGTGATTAGGC
65 GTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCTTTCATTTTATGATTAGGC
* * * *
812666 ACCATAATCACATTCTCCTTATTAGGATAAATGATATTGATGATTTTCTCTTGCATGGAAATC-T
130 ACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTT
*
812730 TT-TTTGCCCTATTTAT-CTTAAAATCAATGTTCATCCCTTAAATAAGACAAGCATCGATTCTCG
195 TTCTTTGCCCTATTT-TCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCG
* * * * ** **
812793 TAAAAGTCCCCACTT-TTTTCAAGATTGGGAACCAAAAACACGTTCTTTTCATTAGGATACACAA
259 TAATAGTCTCCA-TTCTTTTCAAGATTGAGAACCAAAAACA-ATTCCCTTCATTAGGATACATGA
*
812857 CATTGATGCTTTGGTGTTGC-AAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTT
322 CATTGATGCTTTGGTG-T-CAAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTT
* * * * **
812921 GTCTC-TAAGATAAGACAAACATGAATACTCAGAGTAAT---C--T-TTTTCAAGATTAGGTATG
385 GTCTCTTAA-ATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTCAGGATTAGGCACC
*
812979 ATAAACAAAGTCTTCTCATTAGGAT
449 ATAAACATAGTCTTCTCATTAGGAT
* ** * * *
813004 ACACGATATTGATACCATAGTTTCACAAGAAAGGCTTTTTCCCAACCAATTTTTGTAACGTCTAA
1 ACACGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTCCC-ACCAATTTTTGTAAAGTCTAA
* * * * * *
813069 GTTCATGCCTTAAATGAGACAAACGTGGATTCAAGTAGTAATCTTCTTTCATTTTATGATTAGGC
65 GTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCTTTCATTTTATGATTAGGC
* * * *
813134 ACTATAAACACATTCTCCTTATTAGGATAAATGATATTGATGAGTTTCTTTTGCGTGAAAATCTT
130 ACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTT
* * *
813199 TTCTTTGCCCTATTTTCCTTAAAATCAAAGTTTATCCCTTAAATAAGACAAGCATTGATTCTCAT
195 TTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGT
* * * *
813264 AATAGTCTCCATTATTTTCAGGATTTAGAACCTAAAACACATTCCCTTCATTAGGATACATGACA
260 AATAGTCTCCATTCTTTTCAAGATTGAGAACCAAAAACA-ATTCCCTTCATTAGGATACATGACA
* * * * * *
813329 TTGATGCTTTGGTGGCACAAGAAAAGCTTTTTTTTCCACCATTTTTTATATAATCAAAATTTGCC
324 TTGATGCTTTGGTGTCA-AAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTC
* * * * *
813394 TCTTAATTAAGACAAACATGAATAGTTACACTAATCCACATTCTTTTCCA-GATTAGGCACCATA
388 TCTTAAATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTT-CAGGATTAGGCACCATA
*
813458 AACGTAGTCTTCTCATTAGGAT
452 AACATAGTCTTCTCATTAGGAT
* * * *
813480 ACACGATATTGATGTTTTTGTTTCACAAGAAAGTCTTTTTCCCCACCAATTTTTGTAAAGTCTAA
1 ACACGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTT-CCCACCAATTTTTGTAAAGTCTAA
* *
813545 GTTTGTGCATCAAATGAGACAAACATGGATTCTAGTAATGATCTTCTTTCATTTTATGATT
65 GTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCTTTCATTTTATGATT
813606 TTCCTTAAAA
Statistics
Matches: 4908, Mismatches: 810, Indels: 206
0.83 0.14 0.03
Matches are distributed among these distances:
468 207 0.04
469 7 0.00
470 188 0.04
471 4 0.00
472 56 0.01
473 167 0.03
474 1574 0.32
475 1323 0.27
476 584 0.12
477 388 0.08
478 404 0.08
479 5 0.00
480 1 0.00
ACGTcount: A:0.32, C:0.18, G:0.13, T:0.37
Consensus pattern (473 bp):
ACACGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTCCCACCAATTTTTGTAAAGTCTAAG
TTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCTTTCATTTTATGATTAGGCA
CTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTT
TCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTA
ATAGTCTCCATTCTTTTCAAGATTGAGAACCAAAAACAATTCCCTTCATTAGGATACATGACATT
GATGCTTTGGTGTCAAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCT
TAAATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACA
TAGTCTTCTCATTAGGAT
Found at i:813281 original size:158 final size:158
Alignment explanation
Indices: 807429--813511 Score: 1249
Period size: 158 Copynumber: 38.4 Consensus size: 158
807419 CTTTCACTTT
* * * * * * *
807429 ATGATTAGGCACTATCAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTACA
1 ATGATTAGGCACCATAAACACATTCTCCTTATTAGGATACACGATATTGATGATTTTGTTTTGCA
* * * * * * * *
807494 TGAAAATCTTTTGTTTGCCCTATTTTCCTTAAAATCATATTTCATCTCTTAATTAAGACAAGCAT
66 AGAAAAGCTTTTCTTTGCCCTATTTT-CTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACAT
* ** * ***
807559 CGATTCTTGTAACCT-TTC-CCACCCTTTTC
130 TGATTCTCATAA--TAGTCTCCATTATTTTC
* * * * * ** * * * * * * **
807588 AAGATTAGGAAGCAAAAAAACATTC-CCTTCATTAAAATATATGACATTGATGCTTTGGTGTCAC
1 ATGATTAGGCACCATAAACACATTCTCCTT-ATTAGGATACACGATATTGATGATTTTGTTTTGC
* * ** * *
807652 AAGAAAACCTTTTCTTTCCACCGT-TTTTGATAGAATCAAAGTTTC-TCTCTTAAATAAGACAAA
65 AAGAAAAGCTTTTCTTTGC-CC-TATTTTCTTAAAATCAAAG-TTCATCCCTTAAATAAGACAAA
* ** * * *
807715 CA-TGAATACTGGTAGTAATC-CTCATTCTTTTC
127 CATTG-ATTCTCATAATAGTCTC-CATTATTTTC
* * * * * * ** * *
807747 AGGATTAGGTACCATAAACATAGTCTTCTCAGAAGGATACACGATATTGATGCTTTGGTTTTGCA
1 ATGATTAGGCACCATAAACACATTCTCCTTATTAGGATACACGATATTGATGATTTTGTTTTGCA
* ** * * * * * * * *
807812 A-AAAGAGGTTTTTCCAT-ACCAATTTT-TGTAAAGTTAAAATCCATGCCC-CAAATGAGACAAA
66 AGAAA-A-GCTTTTCTTTGCCCTATTTTCT-TAAAATCAAAGTTCAT-CCCTTAAATAAGACAAA
* * * *
807873 CATGGATTC-CAATAAT-GATCTTCTTTCA-TTTA
127 CATTGATTCTC-ATAATAG-TCTCCATT-ATTTTC
* * * * *
807905 ATTATTAGGCACTATAAACACATTCTCCTCATTAGGATA-ATTGATATTGATGATTTTTTTTTTG
1 ATGATTAGGCACCATAAACACATTCTCCTTATTAGGATACA-CGATATTGATGA-TTTTGTTTTG
* * * * * * * * *
807969 CATGAAAATCTTTTCTTTTCCTTATTTTCCATAAAAGCAAATTTCATCCTTTAAATAAGACAAGC
64 CAAGAAAAGCTTTTCTTTGCCCTATTTT-CTTAAAATCAAAGTTCATCCCTTAAATAAGACAAAC
** * * * * *
808034 ATCAACTCTTATAACAGTCTCCATTCTTTTT
128 ATTGATTCTCATAATAGTCTCCATTATTTTC
* * * * * * * * * * * *
808065 AAGATTGGGAACC-TAAAACACATTC-CCTTTGTTAGGGTAAATGACATTGATGCTTTAGTGTCG
1 ATGATTAGGCACCAT-AAACACATTCTCC-TTATTAGGATACACGATATTGATGATTTTGTTTTG
* * * * *
808128 CAAGAAAAG-TCTTTCTTTTCACC-ATTTT-TGATAGAATCAAAGTGTC-TCTCTTAATTAAAAC
64 CAAGAAAAGCT-TTTCTTTGC-CCTATTTTCT--TAAAATCAAAGT-TCATCCCTTAAATAAGAC
* * * * *
808189 AAACA-TGAATACTCATACTAATC-CTCATTCTTTTT
124 AAACATTG-ATTCTCATAATAGTCTC-CATTATTTTC
* * * * * * *** * **
808224 AGGATTAGGCACCGTAAACATAGTT-TTCTCATTAGAATATGTGATATTGAAG-TTTTGGTTTCA
1 ATGATTAGGCACCATAAACACA-TTCTCCTTATTAGGATACACGATATTGATGATTTT-GTTTTG
* ** * * * ** * * *
808287 CAAG-AAAGGTATTT-TTCCCACCAATTTT-TGTAAAGTCTAAGTTTGTGCCTCAAATAAGATAA
64 CAAGAAAAGCT-TTTCTTTGC-CCTATTTTCT-TAAAATCAAAGTTCATCCCTTAAATAAGACAA
* *
808349 AC-TTGGATTCT-AGTAAT-GATCTTCATTCATTTTG
126 ACATT-GATTCTCA-TAATAG-TCTCCATT-ATTTTC
* * * * * * * *
808383 A-GATTAGGCACTATAATCACATTATCCTCATTAGGATAAATGATATTGTTGATTTTCTTTTGCA
1 ATGATTAGGCACCATAAACACATTCTCCTTATTAGGATACACGATATTGATGATTTTGTTTTGCA
* * * * * * * **
808447 TGTAAATCTTTTCCTTACCCTTTTTTTCTTAAAATCAATGTTCATCCCTTAAATAAGACATGCAT
66 AGAAAAGCTTTTCTTTGCCC-TATTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACAT
* * * * *
808512 CGATTCTCGTAAAAGTCCCCATTCTTTTC
130 TGATTCTCATAATAGTCTCCATTATTTTC
* * * * * * * * * * *
808541 AAGACTGGGAACCAAAAACACATTCT-CTTCATTAGGATACACAACATTTATG-CTTTGTGTTGA
1 ATGATTAGGCACCATAAACACATTCTCCTT-ATTAGGATACACGATATTGATGATTTTGTTTTGC
* * ** * ** * *
808604 AAGAAAAGCTTTTCCTTCCACCGT-TTTTGATAGAATCAAAGTTTGTCTCGTAAATAAGACAAAC
65 AAGAAAAGCTTTTCTTTGC-CC-TATTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAAC
* * * *
808668 A-TGAATACTCATAGTAATC-CTCATTCTTTTC
128 ATTG-ATTCTCATAATAGTCTC-CATTATTTTC
* * * * ** * **
808699 AGGATTAGGAACCATAAACATAGTT-T-TTTCATTAGGATACACGATATTGATGCCTTGGTTTCC
1 ATGATTAGGCACCATAAACACA-TTCTCCTT-ATTAGGATACACGATATTGATGATTTTGTTTTG
* ** * * * * * *
808762 CAAGAAATGC-TTT-TTCCCAACCAATTTT-TGTAACATCTAAGTTCGTGCCTTAAATGAGACAA
64 CAAGAAAAGCTTTTCTTTGC--CCTATTTTCT-TAAAATCAAAGTTCATCCCTTAAATAAGACAA
* * *
808824 ACATGGATTC-CACTAAT-GATCTTCTTTCATTTT-
126 ACATTGATTCTCA-TAATAG-TCTCCATT-ATTTTC
* * * *
808857 ATGATTAGGCACTATAAACACATTCTCCTTATTAGGATAAATGATATTGATGATTTTCTTTTGCA
1 ATGATTAGGCACCATAAACACATTCTCCTTATTAGGATACACGATATTGATGATTTTGTTTTGCA
* * ** * * * * *
808922 TGGAAATATTTTTTTTGCCTTATTTTTGTTAAAATCTATA-TTCATCCCTTAAA-AAGACAAGCA
66 AGAAAAGCTTTTCTTTGCCCTA-TTTTCTTAAAATC-AAAGTTCATCCCTTAAATAAGACAAACA
* * * * *
808985 -TCATTTCTCGTAATAGCCTCTATTCTTTTC
129 TTGA-TTCTCATAATAGTCTCCATTATTTTC
* * * * * * * * * *
809015 AAGACTA--CAAACA-AAACACAATT-TCCCTTCATTAGCATACATGACATTAATGCTTTAG-TG
1 ATGATTAGGC-ACCATAAACAC-ATTCT-CCTT-ATTAGGATACACGATATTGATGATTTTGTTT
* * * * ** *
809075 T-CAAAGAAAAGCCTTTCTTT-CTAGC-ATTTT-TGATAGAATCAATGTTTGTCTCTTAAATAAG
62 TGC-AAGAAAAGCTTTTCTTTGC--CCTATTTTCT--TAAAATCAAAGTTCATCCCTTAAATAAG
** ** * * * * *
809136 ACAAACA-TGAATAGTCATACCAATCCCCTTTCTTTTT
122 ACAAACATTG-ATTCTCATAATAGTCTCCATTATTTTC
* * * * * * *** * *
809173 AGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATATACGATACCAAAG-TTTTGGTTTCGC
1 ATGATTAGGCACCATAAACACATTCTCCTTATTAGGATACACGATATTGATGATTTT-GTTTTGC
* ** * * * * * *
809237 AA-AAAAGGCATTT-TTCCCACCAATTTT-TATAAAGTCTAAGTACGTGCCTTAAATAAGACAAA
65 AAGAAAA-GCTTTTCTTTGC-CCTATTTTCT-TAAAATCAAAGTTCATCCCTTAAATAAGACAAA
* * * *
809299 CTTTGATTCT-AGCAAT-GATCTTCTTTCATTTT-
127 CATTGATTCTCA-TAATAG-TCTCCATT-ATTTTC
* * * * * ** *
809331 ATGATTAGGCACTATAAACACATTCTTCTCATTAGGATAAATGATATTGATGATTTCCTTTTGCT
1 ATGATTAGGCACCATAAACACATTCTCCTTATTAGGATACACGATATTGATGATTTTGTTTTGCA
* * * * * * * * *
809396 TGGAAATCTTTTCTTT-CTCGTATTTTGTTAAAATCAAAGTTTATTCCTTAAATAGGACAAGCAT
66 AGAAAAGCTTTTCTTTGC-CCTATTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACAT
* * * * * **
809460 CGATTCTTATTACAGTCTCCATTCTTACC
130 TGATTCTCATAATAGTCTCCATTATTTTC
* * * * * * * *
809489 AAGATTAGGAACCAAAAACA-AGTTC-ACTTCATTAGGATACACGACATTGATGCTTTTGTGTCG
1 ATGATTAGGCACCATAAACACA-TTCTCCTT-ATTAGGATACACGATATTGATGATTTTGTTTTG
* * * * * *
809552 TAAGAAAAGCTTTTCTTTTCACCGT-TTTT-TATAGAATCAAAGTTTATCTCTTAAATAAGATAA
64 CAAGAAAAGCTTTTCTTTGC-CC-TATTTTCT-TAAAATCAAAGTTCATCCCTTAAATAAGACAA
* * * * *
809615 ACA-TGAATACTCCTACTAATC-CCTATTTTTTTC
126 ACATTG-ATTCTCATAATAGTCTCC-ATTATTTTC
* * * ** * *
809648 ATGATTAGGCACCATAAACATAGTCTTCTTATTAGGATATGCGATATTGAAG-TTTTGGTTTCGC
1 ATGATTAGGCACCATAAACACATTCTCCTTATTAGGATACACGATATTGATGATTTT-GTTTTGC
* ** * * * * * * *
809712 AA-AAAAGGCATTT-TTCCCACCAATTTTTTTAAAGTCTAAGTTCATGCCTCAAATGAGACAAAC
65 AAGAAAA-GCTTTTCTTTGC-CCTATTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAAC
* *
809775 TTTGATTCT-AGTAAT-GATCTTCATTCATTTT-
128 ATTGATTCTCA-TAATAG-TCTCCATT-ATTTTC
* * * * * * * * * *
809806 GTGAATAGGCACTATAATCACATTCTCCTCAATAGGATAAATGATATTGATAATTTTCTTTTGCA
1 ATGATTAGGCACCATAAACACATTCTCCTTATTAGGATACACGATATTGATGATTTTGTTTTGCA
* * * * *
809871 TGGAAATC-TTT-TTTGCCCTATTTATCTTAAAATCAATGTTCATCCCTTAAATAAGACAAGCAT
66 AGAAAAGCTTTTCTTTGCCCTATTT-TCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACAT
* * * * * * *
809934 CGATTCTCGTAAAAGTCCCCACTCTTTTT
130 TGATTCTCATAATAGTCTCCATTATTTTC
* * * * ** * * * * *
809963 AAGATTGGGAACCAAAAACATGTTCT-TTTCATTAGGATACATGACT-TTGATGCTTTGGTGTTG
1 ATGATTAGGCACCATAAACACATTCTCCTT-ATTAGGATACACGA-TATTGATGATTTTGTTTTG
* * ** * ** *
810026 CAAGAAAAACTTTTCTTTCCACCCT-TTTTGATAGAATCAAAGTTTGTCTC-TAAGATAAGACAA
64 CAAGAAAAGCTTTTCTTT--GCCCTATTTTCTTAAAATCAAAGTTCATCCCTTAA-ATAAGACAA
* * * * *
810089 ACA-TGAATACTCAGAGTAATC-CTCATTCTTTTC
126 ACATTG-ATTCTCATAATAGTCTC-CATTATTTTC
** * * * * * * * ** * * *
810122 AAAATTAGGTACGATAAACATAGTCTTCTCATTAGGATACACGATATTGACGCCTTAGTTTCGTA
1 ATGATTAGGCACCATAAACACATTCTCCTTATTAGGATACACGATATTGATGATTTTGTTTTGCA
* ****** * * ** * * * * *
810187 AGAAAGGCTTTTAAACAACCAATTTTCGTAACGTCTAAGTTCGTGCCTTAAATGAGACAAACATG
66 AGAAAAGCTTTTCTTTGCCCTATTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATT
* * *
810252 GATTC-CAGTAATAATCTTCTTTCATTTT-
131 GATTCTCA-TAATAGTCTCCATT-ATTTTC
* * * * * * *
810280 ATGACTAGGCACTATAAACACATTCTCCTTATTAGGATAAATGATATTGAAGAGTTTATTTTGCA
1 ATGATTAGGCACCATAAACACATTCTCCTTATTAGGATACACGATATTGATGATTTTGTTTTGCA
* * *
810345 TGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCAT
66 AGAAAAGCTTTTCTTTGCCCTATTTT-CTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACAT
*** *
810410 TGATTCTTGCAATAGTCTCCATTCTTTTC
130 TGATTCTCATAATAGTCTCCATTATTTTC
* * * * * * ***
810439 AGGATT-GAGAACC-TAAAACACATTCT-CTTCATTAGGATACATGACATTGATGCTTTGGTGGC
1 ATGATTAG-GCACCAT-AAACACATTCTCCTT-ATTAGGATACACGATATTGATGATTTTGTTTT
* * * * *
810501 ACAAGAAAAGCTTTTTTTTTTCCACCATTTT-TTATATAATCAAAGTT--TGCCTCTTAATTAAG
63 GCAAGAAAAGC-TTTTCTTTGCC-CTATTTTCTTA-A-AATCAAAGTTCAT-CC-CTTAAATAAG
* ** * * * * *
810563 ACAAGCA-TGAATAGTTACACTAATC-CACATTCTTTTC
122 ACAAACATTG-ATTCTCATAATAGTCTC-CATTATTTTC
* * ** * * * * **
810600 AGGATTACGCACCATAAACGTAGTCTTCTCATTAGGATACACGATATTGATGTTTTTGTTTCACA
1 ATGATTAGGCACCATAAACACATTCTCCTTATTAGGATACACGATATTGATGATTTTGTTTTGCA
* *** * * * ** * * * *
810665 AGAAAGGCTTTT-TCCCCACCAAATTTTGC--AAAGTCTAAGTTTGTACATCAAA-AGAGACGAA
66 AGAAAAGCTTTTCTTTGC-CC-TATTTT-CTTAAAATCAAAGTTCATCCCTTAAATA-AGACAAA
* * *
810726 CA-TGAATTCT-AGTAATAATCTTCTTTCATTTT-
127 CATTG-ATTCTCA-TAATAGTCTCCATT-ATTTTC
*** * * ** ** *
810758 ATGATTAGGCAATGTAAATACATTCTCCTCAGAAGGATGA-ATAATATTGATGATTTTCTTTTGC
1 ATGATTAGGCACCATAAACACATTCTCCTTATTAGGAT-ACACGATATTGATGATTTTGTTTTGC
* * * * *
810822 ATCG-AAATCTTTT-TATTGCCTTATTTTCCTTAAAATCAATGTTCATCCCTTAAATAAGACAAG
65 A-AGAAAAGCTTTTCT-TTGCCCTATTTT-CTTAAAATCAAAGTTCATCCCTTAAATAAGACAAA
* ** *
810885 C-TTCGATTCTCGTAGCAGTCTCCATTCTTTTC
127 CATT-GATTCTCATAATAGTCTCCATTATTTTC
* * * * *** ** * ** * *
810917 AGGACTGGGAACC-TAAAACACATTC-CCGTCGCTAGGATACATAACATTGATGCCTTGGTGTTG
1 ATGATTAGGCACCAT-AAACACATTCTCC-TTATTAGGATACACGATATTGATGATTTTGTTTTG
* * * * * * * *
810980 GAA-AAAAACTTTT-TTTTCCACCATTTT-TAATAGAATCAAAGTTTA-CCTCTTGAATAAGATA
64 CAAGAAAAGCTTTTCTTTGCC-CTATTTTCT--TAAAATCAAAGTTCATCC-CTTAAATAAGACA
** * ** *
811041 AACA-TGAATAGTCATACTAAACCCCA-TACTTTTC
125 AACATTG-ATTCTCATAATAGTCTCCATTA-TTTTC
* * * *** * * * * ** * *
811075 GA-GAGTAGGCATCGTAAATGTAGTCTTCTTATAAGGATACACAATATTGATGCCTTGGTATTGC
1 -ATGATTAGGCACCATAAACACATTCTCCTTATTAGGATACACGATATTGATGATTTTGTTTTGC
* * ** * * * ** ** * *
811139 AAGAAAGGCTTTT-TTCCTG-CCAATTTTGGTAAAGTCTAAG-TCTGTGACGCAAATGAGCCAAA
65 AAGAAAAGCTTTTCTT--TGCCCTATTTTCTTAAAATCAAAGTTC-ATCCCTTAAATAAGACAAA
* * *
811201 CA-CGAATTCT-AGT-ATTGATCTTCATTCATTTT-
127 CATTG-ATTCTCA-TAATAG-TCTCCATT-ATTTTC
* * * *
811233 GTGATTAGGCACTATAAACACATTCT-CTTCATTAGGATA-AGCGGTATTGATGATTTTCTTTTG
1 ATGATTAGGCACCATAAACACATTCTCCTT-ATTAGGATACA-CGATATTGATGATTTTGTTTTG
** * * * *
811296 CTTGAAAATCTTTTCTTTGCCCTAATTTCTTTAAAATCAAAGTTCATCCCTTAAA-AAGATAAGC
64 CAAGAAAAGCTTTTCTTTGCCCTATTTTC-TTAAAATCAAAGTTCATCCCTTAAATAAGACAAAC
* ** *
811360 ATCGAATT-TTGTAATAGTCTCCATTTTTTTC
128 ATTG-ATTCTCATAATAGTCTCCATTATTTTC
** * * * * * * * * * * *
811391 AACATTAGGAACCAAAAACAAATTGC-CTTTAGTAGGATACACGACATTGATGCTTTGGTGTCGT
1 ATGATTAGGCACCATAAACACATT-CTCCTTATTAGGATACACGATATTGATGATTTTGTTTTGC
* *
811455 AAGAAAAGCTTTTCTTTCCCCTATTTT-TGATAAAATCAAAGATTGC--CTCTTAAATAAGACAA
65 AAGAAAAGCTTTTCTTTGCCCTATTTTCT--TAAAATCAAAG-TT-CATCCCTTAAATAAGACAA
* ** * * *
811517 ACA-TGAATACTCATACCAATC-CCTATTCTTTTG
126 ACATTG-ATTCTCATAATAGTCTCC-ATTATTTTC
* * * * * * * * **
811550 AGGATTAGGCACCATAAACATAGTCTTCTCATTCGGATACACAATATTGA-CATTTTGGTTTCAC
1 ATGATTAGGCACCATAAACACATTCTCCTTATTAGGATACACGATATTGATGATTTT-GTTTTGC
* * * * ** * *
811614 AAGAAAGGCATTTT-TCT-CACCAATTTT-TCTAAAGTCAAAGTTCA-CGCCGCAAATGAGCCAA
65 AAGAAAAGC-TTTTCTTTGC-CCTATTTTCT-TAAAATCAAAGTTCATC-CCTTAAATAAGACAA
* * *
811675 ACATGGATTCT-AGT-ATTGATCTTCATTCATTTT-
126 ACATTGATTCTCA-TAATAG-TCTCCATT-ATTTTC
* * ** * * * ** * *
811708 TTAATTAGGCAATATAAACAAATTCTCCTCATTAGGATAAATTATATTGATTATTTTCTTTTGCA
1 ATGATTAGGCACCATAAACACATTCTCCTTATTAGGATACACGATATTGATGATTTTGTTTTGCA
* * * * *
811773 TAG-AAATCTTTTCTTTGCCCTATTTTCCTTGAAATCAAAATTCATCCCTTTAA-AAGACAAGCA
66 -AGAAAAGCTTTTCTTTGCCCTATTTT-CTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACA
* * * *
811836 TCGTTTCTCGTAACAGTCTCCATTATTTTC
129 TTGATTCTCATAATAGTCTCCATTATTTTC
* * ** * ** * * * * * * *
811866 TTGATTCGAAACCAAAAACACATT-TCCTTCATTAAAATATATGACATTGATGCTTTAG-TGTCC
1 ATGATTAGGCACCATAAACACATTCTCCTT-ATTAGGATACACGATATTGATGATTTTGTTTTGC
* * * ** *
811929 AAGAAAAGCTCTTCTTT-CAACC-GTTTT-TGACAGAATCAAAGTTTGTCTCTTAAATAAGACAA
65 AAGAAAAGCTTTTCTTTGC--CCTATTTTCTTA-A-AATCAAAGTTCATCCCTTAAATAAGACAA
* * * * * *
811991 ACA-TGAATACTCATACTATTCCCCATTCA-ATCC
126 ACATTG-ATTCTCATAATAGTCTCCATT-ATTTTC
* * * * * *
812024 ATGATTAGGCACCATAAACATAGTCTTCTCATTAGGACACACGATATTGATG-TTTTGGTTTCGC
1 ATGATTAGGCACCATAAACACATTCTCCTTATTAGGATACACGATATTGATGATTTT-GTTTTGC
*** * ** * * ** * * * * *
812088 AAGATCGGCATTT-TTCCCACCAATTTT-TATAAAGTCTTAGTTTATGCCTCAAATAAGGCAAAA
65 AAGAAAAGCTTTTCTTTGC-CCTATTTTCT-TAAAATCAAAGTTCATCCCTTAAATAAGACAAAC
* * * *
812151 ATGGATTCT-AGTAAT-GACTTTCATTCATTGT-
128 ATTGATTCTCA-TAATAGTC-TCCATT-ATTTTC
* * * *
812182 ATGATTAGGCACTATAAGCACATTCTCCTTATT-GGATGA-ATGATATTGATGAATTT-TTTTGC
1 ATGATTAGGCACCATAAACACATTCTCCTTATTAGGAT-ACACGATATTGATGATTTTGTTTTGC
** * * * *
812244 TCGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCCTAAATAAGACAAGCA
65 AAGAAAAGCTTTTCTTTGCCCTATTTT-CTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACA
* *
812309 TCGATTCTCATAATAGTCTCCATTCTTTTC
129 TTGATTCTCATAATAGTCTCCATTATTTTC
* * * * * * * * * * * **
812339 ATGATTGGGAACC-TAAAACACATT-TCCTTCGTTAGGATAGATGACACTAATGCTTTGGTGTCA
1 ATGATTAGGCACCAT-AAACACATTCTCCTT-ATTAGGATACACGATATTGATGATTTTGTTTTG
* * ** * *
812402 CAAGAAAAACTTTTCTTT-CCACTGTTTT-TGATAAAATCAAAGTTTGTCTCTTAAGTAAGACAA
64 CAAGAAAAGCTTTTCTTTGCC-CTATTTTCT--TAAAATCAAAGTTCATCCCTTAAATAAGACAA
* ** * * *
812465 ACATGGAGACTCATATTATTC-CCTATTCTTTTC
126 ACATTGATTCTCATAATAGTCTCC-ATTATTTTC
* ** * * * * * * * *
812498 AGGATTAGGTTCCATAAACATAGTCTTCTCATTAAGATACACAATATTGGTGCTTTTGTTTTGCA
1 ATGATTAGGCACCATAAACACATTCTCCTTATTAGGATACACGATATTGATGATTTTGTTTTGCA
* * ** * * * * * * *
812563 AGAAAGGCTTTT-TCCTAACCAATTTT-TGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAAC-
66 AGAAAAGCTTTTCT-TTGCCCTATTTTCT-TAAAATCAAAGTTCATCCCTTAAATAAGACAAACA
** * *
812625 TTGGATTCAAATAAT-GATCTTCTTTCATTTT-
129 TT-GATTCTCATAATAG-TCTCCATT-ATTTTC
* * * * * *
812656 GTGATTAGGCACCATAATCACATTCTCCTTATTAGGATAAATGATATTGATGATTTTCTCTTGCA
1 ATGATTAGGCACCATAAACACATTCTCCTTATTAGGATACACGATATTGATGATTTTGTTTTGCA
* * * * *
812721 TGGAAATC-TTT-TTTGCCCTATTTATCTTAAAATCAATGTTCATCCCTTAAATAAGACAAGCAT
66 AGAAAAGCTTTTCTTTGCCCTATTT-TCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACAT
* * * *
812784 CGATTCTCGTAAAAGTCCCCACTT-TTTTC
130 TGATTCTCATAATAGTCTCCA-TTATTTTC
* * * * * * * * * * *
812813 AAGATTGGGAACCAAAAACACGTTCT-TTTCATTAGGATACACAACATTGATGCTTTGGTGTTGC
1 ATGATTAGGCACCATAAACACATTCTCCTT-ATTAGGATACACGATATTGATGATTTTGTTTTGC
* ** * ** *
812877 AAGAAAAGCTTTTCTTTCCACCGT-TTTTGATAGAATCAAAGTTTGTCTC-TAAGATAAGACAAA
65 AAGAAAAGCTTTTCTTTGC-CC-TATTTTCTTAAAATCAAAGTTCATCCCTTAA-ATAAGACAAA
* * * *
812940 CA-TGAATACTCAGAGTA--AT-C--T-TTTTC
127 CATTG-ATTCTCATAATAGTCTCCATTATTTTC
* * ** * * * * ** * **
812966 AAGATTAGGTATGATAAACAAAGTCTTCTCATTAGGATACACGATATTGAT-ACCATAGTTTCAC
1 ATGATTAGGCACCATAAACACATTCTCCTTATTAGGATACACGATATTGATGA-TTTTGTTTTGC
* ** * ** * * *
813030 AAGAAAGGC-TTT-TTCCCAACCAATTTT-TGTAACGTCTAAGTTCATGCCTTAAATGAGACAAA
65 AAGAAAAGCTTTTCTTTGC--CCTATTTTCT-TAAAATCAAAGTTCATCCCTTAAATAAGACAAA
* * * * * * *
813092 CGTGGATTC-AAGTAGTAATCTTCTTTCATTTT-
127 CATTGATTCTCA-TAATAGTCTCCATT-ATTTTC
* * * * * *
813124 ATGATTAGGCACTATAAACACATTCTCCTTATTAGGATAAATGATATTGATGAGTTTCTTTTGCG
1 ATGATTAGGCACCATAAACACATTCTCCTTATTAGGATACACGATATTGATGATTTTGTTTTGCA
* * * *
813189 TGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTTATCCCTTAAATAAGACAAGCAT
66 AGAAAAGCTTTTCTTTGCCCTATTTT-CTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACAT
813254 TGATTCTCATAATAGTCTCCATTATTTTC
130 TGATTCTCATAATAGTCTCCATTATTTTC
* * * * * * ***
813283 AGGATTTA-GAACC-TAAAACACATTC-CCTTCATTAGGATACATGACATTGATGCTTTGGTGGC
1 ATGA-TTAGGCACCAT-AAACACATTCTCCTT-ATTAGGATACACGATATTGATGATTTTGTTTT
* * * * *
813345 ACAAGAAAAGCTTTT-TTTTCCACCATTTT-TTATATAATCAAAATT--TGCCTCTTAATTAAGA
63 GCAAGAAAAGCTTTTCTTTGCC-CTATTTTCTTA-A-AATCAAAGTTCAT-CC-CTTAAATAAGA
** * * * * *
813406 CAAACA-TGAATAGTTACACTAATC-CACATTCTTTTCC
123 CAAACATTG-ATTCTCATAATAGTCTC-CATTATTTT-C
** * * * * **
813443 A-GATTAGGCACCATAAACGTAGTCTTCTCATTAGGATACACGATATTGATGTTTTTGTTTCACA
1 ATGATTAGGCACCATAAACACATTCTCCTTATTAGGATACACGATATTGATGATTTTGTTTTGCA
813507 AGAAA
66 AGAAA
813512 GTCTTTTTCC
Statistics
Matches: 4161, Mismatches: 1406, Indels: 714
0.66 0.22 0.11
Matches are distributed among these distances:
151 5 0.00
152 38 0.01
153 60 0.01
154 2 0.00
155 3 0.00
156 73 0.02
157 438 0.11
158 1799 0.43
159 1433 0.34
160 192 0.05
161 115 0.03
162 3 0.00
ACGTcount: A:0.32, C:0.18, G:0.13, T:0.37
Consensus pattern (158 bp):
ATGATTAGGCACCATAAACACATTCTCCTTATTAGGATACACGATATTGATGATTTTGTTTTGCA
AGAAAAGCTTTTCTTTGCCCTATTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATT
GATTCTCATAATAGTCTCCATTATTTTC
Found at i:814417 original size:867 final size:861
Alignment explanation
Indices: 812746--814472 Score: 2237
Period size: 867 Copynumber: 2.0 Consensus size: 861
812736 CCCTATTTAT
812746 CTTAAAATCAATGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAAAAGTCCCCACTTTTT
1 CTTAAAATCAATGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAAAAGTCCCCACTTTTT
* * * *
812811 TCAAGATTGGGAACCAAAAACACGTTCTTTTCATTAGGATACACAACATTGATGCTTTGGTGTTG
66 TCAAGATTGGGAACCAAAAACACATTCATTGCA-TAGGATACACAACATTGATGCTTTGGTGTCG
* * * * **
812876 CAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTAAGATAAGACAAAC
130 AAAAAAAAGCTTTTCTTTCCACCATTTTTAATAGAATCAAAGTTTACCTCTAAGATAAGACAAAC
* * * * *
812941 ATGAATACTCAGAGTAATCTTTTTCAAGATTAGGTATGATAAACAAAGTCTTCTCATTAGGATAC
195 ATGAACACTCAGACTAATCTTTTTCAAGATTAGGCACGA-AAACAAAGTCTTCTCATAAGGATAC
* *
813006 ACGATATTGATACCATAGTTTCACAAGAAAGGCTTTTTCCCAACCAATTTTTGTAACGTCTAAGT
259 ACAATATTGATACCATAGTTTCACAAGAAAGGCTTTTTCCCAACCAATTTTTGTAAAGTCTAAGT
* * ** ** * *
813071 TCATGCCTTAAATGAGACAAACGTGGATTCAAGTAGTAATCTTCTTTCATTTTATGATTAGGCAC
324 CCATGACGCAAATGAGACAAACACGAATTCAAGTAGTAATCTTCATTCATTTTATGATTAGGCAC
*
813136 TATAAACACATTCTCCTTATTAGGATAAATGATATTGATGAGTTTCTTTTGCGTGAAAATCTTTT
389 TATAAACACATTCTCCTTATTAGGATAAAAGATATTGATGAGTTTCTTTTGCGTGAAAATCTTTT
* *
813201 CTTTGCCCTATTTTCCTTAAAATCAAAGTTTATCCCTTAAATAAGACAAGCATTGATTCTCATAA
454 CTTTGCCCTAATTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATTGATTCTCATAA
* * * *
813266 TAGTCTCCATTATTTTCAGGATTTAGAACCTAAAACACATTCCCTTCATTAGGATACATGACATT
519 TAGTCTCCATTATTTTCAGGATTTAGAACCAAAAACAAATTCCCTTCAATAGGATACATGAAATT
* * *
813331 GATGCTTTGGTGGCACAAGAAAAGCTTTTTTTTCCACCATTTTTTATATAATCAAAATTTGCCTC
584 GATGCTTTGGTGGCACAAGAAAAGCTTTTCTTTCCACCATTTTTGATAAAATCAAAATTTGCCTC
* * * *
813396 TTAATTAAGACAAACATGAATAGTTACACTAATCCACATTCTTTTCCAGATTAGGCACCATAAAC
649 TTAAATAAGACAAACATGAATACTCACACCAATCCACATTCTTTTCCAGATTAGGCACCATAAAC
* * * *
813461 GTAGTCTTCTCATTAGGATACACGATATTGATGTTTTTGTTTCACAAGAAAGTCTTTTTCCCCAC
714 ATAGTCTTCTCATTAGGATACACAATATTGATGTTTTGGTTTCACAAGAAAGGCTTTTTCCCCAC
* *
813526 CAATTTTTGTAAAGTCTAAGTTTGTGCATCAAATGAGACAAACATGGATTCTAGTAA-TGATCTT
779 CAATTTTTGTAAAGTCTAAGTTTGTGCATCAAATAAGACAAAAATGGATTCTAGTAATTGATCTT
* *
813590 CTTTCATTTTATGATTTTC
844 -ATTCATTGTATGATTTTC
* ** *
813609 CTTAAAATCAATGTTCATCCCTTAAATAAGACAAGCTTCGATTCTCGTAGCAGTCTCCC-TTTTT
1 CTTAAAATCAATGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAAAAGTC-CCCACTTTT
* *
813673 TTCAAGATTGGGAACCTAAAACACATTCCCATTGC-TAGGATACATAACATTGATGCTTTGGTGT
65 TTCAAGATTGGGAACCAAAAACACATT--CATTGCATAGGATACACAACATTGATGCTTTGGTGT
*
813737 CGAAAAAAAAGCTTTTCTTTCCACCATTTTTAATAGAATCAAAGTTTACCTCTTAA-ATAAGATA
128 CGAAAAAAAAGCTTTTCTTTCCACCATTTTTAATAGAATCAAAGTTTACCTC-TAAGATAAGACA
* * * *** *
813801 AACATGAACAGTCATACTAATCCCCATACTTTTCGAGATTAGGCACCG-AAATGTAGTCTTTTCA
192 AACATGAACACTCAGACTAAT---C-T--TTTTCAAGATTAGGCA-CGAAAACAAAGTCTTCTCA
* * * * * * *
813865 TAAGGATACACAATATTGATGCCTTGGTATT-TCAAGGAAGGCTTTCTTTCC-GCCAATTTTTGT
250 TAAGGATACACAATATTGATACCATAGT-TTCACAAGAAAGGCTTT-TTCCCAACCAATTTTTGT
* * * * * *
813928 AAAGTCTAAGTCCGTGACGCAAATGAGCCAAACACGAATTCTAGTATTGATCTTCATTCATTTTC
313 AAAGTCTAAGTCCATGACGCAAATGAGACAAACACGAATTCAAGTAGTAATCTTCATTCATTTTA
* *
813993 TGATTAGGCACTATAAATACATTCT-CTTCATTAGGATAAACAG-TATTGATGATTTTCTTTTGC
378 TGATTAGGCACTATAAACACATTCTCCTT-ATTAGGATAAA-AGATATTGATGAGTTTCTTTTGC
* * * *
814056 TTGAAAATCTTTTCTTTGCCTTAATTTCTTTAAAATCAAAGTTCATCCCTTAAA-AAGATAAGC-
441 GTGAAAATCTTTTCTTTGCCCTAATTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCA
* * *
814119 TTCGATTCTCGTAATAGTCTCCATTTTTTTCTA-GA-TTAGGAACCAAAAACAAATTGCCTTCAA
506 TT-GATTCTCATAATAGTCTCCATTATTTTC-AGGATTTA-GAACCAAAAACAAATTCCCTTCAA
* ** *
814182 TAGGATACATGAAATTGATGCTTTGGTGTCGTAAGAAAAGCTTTTCTTTCCCCCATTTTTGATAA
568 TAGGATACATGAAATTGATGCTTTGGTGGCACAAGAAAAGCTTTTCTTTCCACCATTTTTGATAA
* * *
814247 AATCAAAGA-TTGTCTCTTAAATAAGACAAACATGAATACTCATACCAATCC-CTATTCTTTT-G
633 AATCAAA-ATTTGCCTCTTAAATAAGACAAACATGAATACTCACACCAATCCAC-ATTCTTTTCC
*
814309 AGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACACAATATTGATGTTTTGGTTTCAGA
696 A-GATTAGGCACCATAAACATAGTCTTCTCATTAGGATACACAATATTGATGTTTTGGTTTCACA
** * * *
814374 AGATCGGCATTTTT-CCCACCAATTTTTGTAAAGTCTTAGTTTGTGCCTCAAATAAGGCAAAAAT
760 AGAAAGGC-TTTTTCCCCACCAATTTTTGTAAAGTCTAAGTTTGTGCATCAAATAAGACAAAAAT
*
814438 GGATTCTAGTAATTGCTCTTATTCATTGTATGATT
824 GGATTCTAGTAATTGATCTTATTCATTGTATGATT
814473 AGGCACTATA
Statistics
Matches: 744, Mismatches: 97, Indels: 42
0.84 0.11 0.05
Matches are distributed among these distances:
863 178 0.24
864 6 0.01
865 4 0.01
866 8 0.01
867 302 0.41
868 224 0.30
869 21 0.03
870 1 0.00
ACGTcount: A:0.32, C:0.18, G:0.14, T:0.36
Consensus pattern (861 bp):
CTTAAAATCAATGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAAAAGTCCCCACTTTTT
TCAAGATTGGGAACCAAAAACACATTCATTGCATAGGATACACAACATTGATGCTTTGGTGTCGA
AAAAAAAGCTTTTCTTTCCACCATTTTTAATAGAATCAAAGTTTACCTCTAAGATAAGACAAACA
TGAACACTCAGACTAATCTTTTTCAAGATTAGGCACGAAAACAAAGTCTTCTCATAAGGATACAC
AATATTGATACCATAGTTTCACAAGAAAGGCTTTTTCCCAACCAATTTTTGTAAAGTCTAAGTCC
ATGACGCAAATGAGACAAACACGAATTCAAGTAGTAATCTTCATTCATTTTATGATTAGGCACTA
TAAACACATTCTCCTTATTAGGATAAAAGATATTGATGAGTTTCTTTTGCGTGAAAATCTTTTCT
TTGCCCTAATTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATTGATTCTCATAATA
GTCTCCATTATTTTCAGGATTTAGAACCAAAAACAAATTCCCTTCAATAGGATACATGAAATTGA
TGCTTTGGTGGCACAAGAAAAGCTTTTCTTTCCACCATTTTTGATAAAATCAAAATTTGCCTCTT
AAATAAGACAAACATGAATACTCACACCAATCCACATTCTTTTCCAGATTAGGCACCATAAACAT
AGTCTTCTCATTAGGATACACAATATTGATGTTTTGGTTTCACAAGAAAGGCTTTTTCCCCACCA
ATTTTTGTAAAGTCTAAGTTTGTGCATCAAATAAGACAAAAATGGATTCTAGTAATTGATCTTAT
TCATTGTATGATTTTC
Found at i:814524 original size:474 final size:473
Alignment explanation
Indices: 813605--815463 Score: 2059
Period size: 474 Copynumber: 3.9 Consensus size: 473
813595 ATTTTATGAT
* * *
813605 TTTCCTTAAAATCAATGTTCATCCCTTAAATAAGACAAGCTTCGATTCTCGTAGCAGTCTCCCTT
1 TTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCTTCGATTCTCGTAACAGTCTCCATT
* * *
813670 TTTTTCAAGATTGGGAACCTAAAACACATTCCCATTGC-TAGGATACAT-AACATTGATGCTTTG
66 CTTTTCTAGATTAGGAACCTAAAACACATTCCC-TT-CTTAGGATACATGAA-ATTGATGCTTTG
* * * * **
813733 GTGTCGA-AAAAAAAGCTTTTCTTTCCACCATTTTTAATAGAATCAAAGTTTACCTCTTAAATAA
128 GTGTC-ATAAGAAAAGCTTTTCTTTCCACCATTTTTGATAAAATCAAAGATTGTCTCTTAAATAA
* * * * **
813797 GATAAACATGAACAGTCATACTAATCCCCATACTTTTCGA-GATTAGGCACC-GAAATGTAGTCT
192 GACAAACATGAACAGTCATACTAATCCCTATTCTTTT-GAGGATTAGGCACCATAAACATAGTCT
* * ** * * *
813860 TTTCATAAGGATACACAATATTGATGCCTTGGTATTTC-AAGGAAGGCTTTCTTTCCGCCAATTT
256 TCTCATTAGGATACACAATATTGATGTTTTGG--TTTCGAAGAAAGGCTTT-TTCCCACCAATTT
* * * * * * *
813924 TTGTAAAGTCTAAGTCCGTGACGCAAATGAGCCAAACACGAATTCTAGTATTGATCTTCATTCAT
318 TTGTAAAGTCTAAGTTCGTGCCTCAAATGAGGCAAACATGGATTCTAGTAATGATCTTCATTCAT
* * * **
813989 TTTCTGATTAGGCACTATAAATACATTCTCTTCATTAGGATAAA-CAGTATTGATGATTTTCTTT
383 TTTCTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGA-TATTGACAATTTTCTTT
*
814053 TGCTTGAAAATCTTTTCTTTGCCTTAA
447 TGCTTGAAAATCTTTTCTTTGCCCTAA
* * *
814080 TTTCTTTAAAATCAAAGTTCATCCCTTAAA-AAGATAAGCTTCGATTCTCGTAATAGTCTCCATT
1 TTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCTTCGATTCTCGTAACAGTCTCCATT
* * * * *
814144 TTTTTCTAGATTAGGAACCAAAAACAAATTGCCTTCAATAGGATACATGAAATTGATGCTTTGGT
66 CTTTTCTAGATTAGGAACCTAAAACACATTCCCTTC-TTAGGATACATGAAATTGATGCTTTGGT
* *
814209 GTCGTAAGAAAAGCTTTTCTTTCCCCCATTTTTGATAAAATCAAAGATTGTCTCTTAAATAAGAC
130 GTCATAAGAAAAGCTTTTCTTTCCACCATTTTTGATAAAATCAAAGATTGTCTCTTAAATAAGAC
* * *
814274 AAACATGAATACTCATACCAATCCCTATTCTTTTGAGGATTAGGCACCATAAACATAGTCTTCTC
195 AAACATGAACAGTCATACTAATCCCTATTCTTTTGAGGATTAGGCACCATAAACATAGTCTTCTC
**
814339 ATTAGGATACACAATATTGATGTTTTGGTTTCAGAAGATCGGCATTTTTCCCACCAATTTTTGTA
260 ATTAGGATACACAATATTGATGTTTTGGTTTC-GAAGAAAGGC-TTTTTCCCACCAATTTTTGTA
* * * * * * *
814404 AAGTCTTAGTTTGTGCCTCAAATAAGGCAAAAATGGATTCTAGTAATTGCTCTT-ATTCATTGTA
323 AAGTCTAAGTTCGTGCCTCAAATGAGGCAAACATGGATTCTAGTAA-TGATCTTCATTCATTTTC
* *
814468 TGATTAGGCACTATAAACACATTCTCCTCATT-GCATGAATGATATTGACAATTTTCTTTTGCTT
387 TGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGACAATTTTCTTTTGCTT
* *
814532 GGAAATCTTTTCTTTGCCCT-G
452 GAAAATCTTTTCTTTGCCCTAA
* * *
814553 TTTCTCTTAAAATCAAA-TTCATCCCTTAAATAAGACAAGCGTGGATTCTCATAACAGTCTCCAT
1 TTTC-CTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCTTCGATTCTCGTAACAGTCTCCAT
* * * **
814617 TCTTTTC-ATGATTGGGAACCTAAAACACATTCCCTTCGTTAGGATACATGACACTGATATTTTG
65 TCTTTTCTA-GATTAGGAACCTAAAACACATTCCCTTC-TTAGGATACATGAAATTGATGCTTTG
* * * ** * *
814681 GTGTCACATGAAAAACTTTTCTTTCCACTGTTTTTGATAATATCAAAGTTTGTCTCTTAAATAAG
128 GTGTCATAAGAAAAGCTTTTCTTTCCACCATTTTTGATAAAATCAAAGATTGTCTCTTAAATAAG
* * * * * * *
814746 ACAAACATGCATAGTCATATTATTCCCTATTCTTTTTAGGATTAGGTAACATAAACATAGTCTTC
193 ACAAACATGAACAGTCATACTAATCCCTATTCTTTTGAGGATTAGGCACCATAAACATAGTCTTC
* *
814811 TCATTAAGATACACAATATTGGTGCTTTT-GTTTCGCAAGAAAGGCTTTTTCCCAACCAATTTTT
258 TCATTAGGATACACAATATTGATG-TTTTGGTTTCG-AAGAAAGGCTTTTTCCC-ACCAATTTTT
* * * * * * * **
814875 GTAAAGTCTAAGTTCATGCTTCAAATGTGACAAACTTAGATTCAAGTAATGATCTTTTTTCATTT
320 GTAAAGTCTAAGTTCGTGCCTCAAATGAGGCAAACATGGATTCTAGTAATGATCTTCATTCATTT
* * * * * * *
814940 TCTGATTAGGCAGTATAAATAGATTCTCATCTTTAGGATAAATGATATTGACCATATTCTTTTGC
385 TCTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGACAATTTTCTTTTGC
** *
815005 AAGAAAATCTTTTCTTTGCCCTAT
450 TTGAAAATCTTTTCTTTGCCCTAA
* * * * * **
815029 TTTCCATAAAATCAATGTTCATCCTTTAAATAAGACAAGC-ACTGATTCTCGT-ACTTGTCTTAA
1 TTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCTTC-GATTCTCGTAAC-AGTCTCCA
* *
815092 TTCTTTTCTGGATTAGGAACCTAAAACACCA-TCCCTTCCTTAGGATACATGACATTGATGCTTT
64 TTCTTTTCTAGATTAGGAACCTAAAACA-CATTCCCTT-CTTAGGATACATGAAATTGATGCTTT
* * * * *
815156 GCTGGCATAAGAAAAGCTTTTTTTTCTACCATTTTTTATAAAATCAAA-ATT-TACCTCTTAAAT
127 GGTGTCATAAGAAAAGCTTTTCTTTCCACCATTTTTGATAAAATCAAAGATTGT--CTCTTAAAT
* * **
815219 AAGACAAACATGAACAGTCATACTAATCTCC-ATTCTTTTTG-GGATTAGGCGCCTTAAATGTAG
190 AAGACAAACATGAACAGTCATACTAATC-CCTATTC-TTTTGAGGATTAGGCACCATAAACATAG
* * * *
815282 TCTTCTCATTAGGACACACGATATTGATGTTTTGGTTTCGAAAAAAGGCTTTTTCCGAACCAATT
253 TCTTCTCATTAGGATACACAATATTGATGTTTTGGTTTCGAAGAAAGGCTTTTTCC-CACCAATT
* * * * *
815347 TTTGTAAAGTCCAAATTCGTACCTCAAATGAGGCACACATGGATTCTACTAATGATCTTCATTCA
317 TTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGGCAAACATGGATTCTAGTAATGATCTTCATTCA
* ** * * *
815412 TTTTGTGATTACACACAATAAACACATTTTTCTCATTAGGATAAATGATATT
382 TTTTCTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATT
815464 AATGAATTTG
Statistics
Matches: 1157, Mismatches: 195, Indels: 64
0.82 0.14 0.05
Matches are distributed among these distances:
472 1 0.00
473 41 0.04
474 540 0.47
475 344 0.30
476 222 0.19
477 9 0.01
ACGTcount: A:0.31, C:0.19, G:0.13, T:0.37
Consensus pattern (473 bp):
TTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCTTCGATTCTCGTAACAGTCTCCATT
CTTTTCTAGATTAGGAACCTAAAACACATTCCCTTCTTAGGATACATGAAATTGATGCTTTGGTG
TCATAAGAAAAGCTTTTCTTTCCACCATTTTTGATAAAATCAAAGATTGTCTCTTAAATAAGACA
AACATGAACAGTCATACTAATCCCTATTCTTTTGAGGATTAGGCACCATAAACATAGTCTTCTCA
TTAGGATACACAATATTGATGTTTTGGTTTCGAAGAAAGGCTTTTTCCCACCAATTTTTGTAAAG
TCTAAGTTCGTGCCTCAAATGAGGCAAACATGGATTCTAGTAATGATCTTCATTCATTTTCTGAT
TAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGACAATTTTCTTTTGCTTGAAA
ATCTTTTCTTTGCCCTAA
Found at i:816277 original size:13 final size:13
Alignment explanation
Indices: 816259--816284 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
816249 AATGTTTTTG
816259 TGTATCGATACAT
1 TGTATCGATACAT
816272 TGTATCGATACAT
1 TGTATCGATACAT
816285 ACTTTGTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:819174 original size:20 final size:21
Alignment explanation
Indices: 819135--819177 Score: 61
Period size: 20 Copynumber: 2.1 Consensus size: 21
819125 GGCTAGTATG
*
819135 GGGACTGCCTGGTTGCGACCT
1 GGGACTGCCTGGTCGCGACCT
*
819156 GGGAGTGCC-GGTCGCGACCT
1 GGGACTGCCTGGTCGCGACCT
819176 GG
1 GG
819178 TGATGCTGCC
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
20 12 0.60
21 8 0.40
ACGTcount: A:0.09, C:0.28, G:0.44, T:0.19
Consensus pattern (21 bp):
GGGACTGCCTGGTCGCGACCT
Found at i:823686 original size:13 final size:13
Alignment explanation
Indices: 823668--823693 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
823658 AATGTTTTTG
823668 TGTATCGATACAT
1 TGTATCGATACAT
823681 TGTATCGATACAT
1 TGTATCGATACAT
823694 ACTTTGTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:824544 original size:158 final size:158
Alignment explanation
Indices: 824164--824545 Score: 391
Period size: 158 Copynumber: 2.4 Consensus size: 158
824154 AATAGTCTCT
* * * * *
824164 ATTCTTTTCAGGATT-AGGAACCTAAAACACATTCCCTTATTTAA-GATAGATGATATTAATGCT
1 ATTCTTTTCAAGATTGA-GCACC-AAAACACAGT-CCTT-TCTAAGGATACATGATATTAATGCT
* ** *
824227 TTAGTGTTTTAAGAAAAGCGTTTCTTTCCATCCTTTTTGATAGAATCAAAGTTTGCCTCATAAAT
62 TTAGTATTGCAAGAAAAGCGTTTCTTTCCATCATTTTTGATAGAATCAAAGTTTGCCTCATAAAT
*
824292 AAGATAAAACATGAATAGTAATTCTAGTCCCC
127 AAGATAAAACATGAATAGTAATACTAGTCCCC
* * * * * *
824324 ATTCTTTTCAAGATTGAGCACCAAAACACATTCCTTTCTTAGGATACACGACATTAAGGCTTTTG
1 ATTCTTTTCAAGATTGAGCACCAAAACACAGTCCTTTCTAAGGATACATGATATTAATGCTTTAG
**
824389 TATTGCAAGAAAAGTTTTTCTTTCCATCATTTTTGATAGAATCAAAGTTTGCCTC-TAAAATAAG
66 TATTGCAAGAAAAGCGTTTCTTTCCATCATTTTTGATAGAATCAAAGTTTGCCTCAT-AAATAAG
* *
824453 A-CAAACATTAATAGTAATACTAGTCCCC
130 ATAAAACATGAATAGTAATACTAGTCCCC
* * ** ** *
824481 ATTTTTTTC-GGATT-AGGCATGATAAACGTAGT-CTTCTCATAAGGATACATGATGTTAATGCT
1 ATTCTTTTCAAGATTGA-GCACCA-AAACACAGTCCTT-TC-TAAGGATACATGATATTAATGCT
824543 TTA
62 TTA
824546 TTTTCGGAAG
Statistics
Matches: 184, Mismatches: 31, Indels: 16
0.80 0.13 0.07
Matches are distributed among these distances:
155 1 0.01
156 11 0.06
157 44 0.24
158 99 0.54
159 10 0.05
160 18 0.10
161 1 0.01
ACGTcount: A:0.34, C:0.17, G:0.14, T:0.36
Consensus pattern (158 bp):
ATTCTTTTCAAGATTGAGCACCAAAACACAGTCCTTTCTAAGGATACATGATATTAATGCTTTAG
TATTGCAAGAAAAGCGTTTCTTTCCATCATTTTTGATAGAATCAAAGTTTGCCTCATAAATAAGA
TAAAACATGAATAGTAATACTAGTCCCC
Found at i:825412 original size:473 final size:475
Alignment explanation
Indices: 824317--825756 Score: 1731
Period size: 474 Copynumber: 3.0 Consensus size: 475
824307 TAGTAATTCT
* * * *
824317 AGTCCCCATTCTTTTCAAGATTGAGCACC-AAAACACATTCCTTTC-TTAGGATACACGACATTA
1 AGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCTTTCATTAGGATACACGACATTG
* * *
824380 AGGCTTTTGTA--TTGCAAGAAAAGTTTTTCTTTCCA-TCATTTTTGATAGAATCAAAGTTTGCC
66 ATGC-TTTG-AGGTTGCAAGAAAAGCTTTTCTTTCCACT-ATTTTTGATAGAATCAAAGTTTGTC
* * * * * *
824442 TCTAAAATAAGACAAACATTAATAGTAATACTAGTCCCCATT-TTTTTCGGATTAGGCA-TGATA
128 TCTTAAATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTTAGGATTAGGCACT-ATA
* * * * * ** * *
824505 AACGTAGTCTTCTCATAAGGATACATGATGTTAATGCTTTATTTTCGGAAGAAAGGCTTTTTTCC
192 AACATAGTCTTCTCATAAGGATATACGATATTAATGTTTTGGTTTCGCAAGAAAGGC-ATTTTCC
* * * * * *
824570 -CACCAATTTTTATAAAGTCTAAGTTCGTGCCTCAAATTAGCCAAACATGGATTCTAGTATTGAT
256 TAACCAATTTTTGTAAAATCTAAGTTCGTGCCTCAAATTAGACAAACTTGGATTCTAGTAATGAT
* * * * *
824634 CTTCATTCATTTTGTGAGTAGGCACCATAAACACATTCTCCTCATTAGGATAAATGTTATTGATG
321 CTTCTTTCATTTTGTGATTAGGCACTATAAGCACATTCTCCTCATTAGGATAAATGATATTGATG
* * *
824699 AATTTCTTTTGCATGGAAATATTTTCTTTACCCTATTTTCCTTAAAATCAAAGTTCATTCCTTCA
386 -ATTTCTTTTGCATGGAAATATTTTCTTTGCCATATTTTCCTTAAAATCAAAGTTCATCCCTT-A
* *
824764 AA-AA-ACAAGCATCGCTTCTCGTAAC
449 AATAAGACAAGCATCGATTCTCGTAAA
* ** * * * * * *
824789 GGTCTCCATTCTTTTCTTGATTAGGAACCAAAAACATATTCCCTTAATTAGGATACATGTCATTG
1 AGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCTTTCATTAGGATACACGACATTG
* * * ** * *
824854 ATGCTTTG-GTGTTGCTAGAAAAGCCTCTCTTTCCACCGTTTTTGATCGAATCAAAGCTTGTCTC
66 ATGCTTTGAG-GTTGCAAGAAAAGCTTTTCTTTCCACTATTTTTGATAGAATCAAAGTTTGTCTC
* * * * *
824918 CTAAATAAGACAAATATGAATACTCATGCAAATCCCCATTCTTTTTAGGATTAGGCACTATAAAT
130 TTAAATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTTAGGATTAGGCACTATAAAC
* * * * * * *
824983 TTATTCTTCTCATTAGGATATGCGATATTAATGTTTTGGTTTCTCAAGAAACGCATTTTCCTAAT
195 ATAGTCTTCTCATAAGGATATACGATATTAATGTTTTGGTTTCGCAAGAAAGGCATTTTCCTAAC
* * * *
825048 C-GTTTTTGTAAAATCTAAGTTCGTGCCTCAAATTAGATAAACTTGGATTCTGGTAATGATTTTC
260 CAATTTTTGTAAAATCTAAGTTCGTGCCTCAAATTAGACAAACTTGGATTCTAGTAATGATCTTC
*
825112 TTTCATTTTGTGATTAGGCACTATAAGCATATTCTCCTCATTAGGATAAATGATATTGATGATTT
325 TTTCATTTTGTGATTAGGCACTATAAGCACATTCTCCTCATTAGGATAAATGATATTGATGATTT
* *
825177 CTTTTG-ATGGAAATATTTTCTTTGCCTTATTTTCCTTAAAATCAAAGTTCATCCCCTAAATAAG
390 CTTTTGCATGGAAATATTTTCTTTGCCATATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAG
825241 ACAAGCATCGATTCTCGTAAA
455 ACAAGCATCGATTCTCGTAAA
* * *
825262 AGTC-CTTATTCTTCTCAAGATTGGGAACCAAAAACACAATCCTTTCATTAGGATACACGACATT
1 AGTCTC-CATTCTTTTCAAGATTGGGAACCAAAAACACATTCCTTTCATTAGGATACACGACATT
* * * *
825326 GATGCTTTGAGGTCGCAAAAAAAGCTTTTCTTTCCACTATTTTAGATAGAATCAAAGTTTGTCTT
65 GATGCTTTGAGGTTGCAAGAAAAGCTTTTCTTTCCACTATTTTTGATAGAATCAAAGTTTGTCTC
* ** * * *
825391 TTAAATAAGACAAACATGAATACTCACACTAATCCCCATTCTTTCCAAGATTAGGCCCCATAAAC
130 TTAAATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTTAGGATTAGGCACTATAAAC
* * * * * * *
825456 ATAGTCTTATTATGAGGAT-TCACGTTATTGATGTTTTGGTTTCGCAAGAAAGGCATTTTTCTTA
195 ATAGTCTTCTCATAAGGATAT-ACGATATTAATGTTTTGGTTTCGCAAGAAAGGCATTTTCCTAA
*
825520 CCAATTTTTGTAAAATCTAAGTTCGTGCCTCAAATAAGACAAACTTGGATTCTAGTAATGATCTT
259 CCAATTTTTGTAAAATCTAAGTTCGTGCCTCAAATTAGACAAACTTGGATTCTAGTAATGATCTT
* * * *
825585 CTTTCTTTTTGTGATTAGGTACTAGAAGCACATTCTCCTCATTAGGATAAATGATATTGATCATA
324 CTTTCATTTTGTGATTAGGCACTATAAGCACATTCTCCTCATTAGGATAAATGATATTGATGAT-
* * *
825650 TTCATTTGCATGGAAATCTTTTCTTTGCCATATTTTCCTGAAAATCAAAGTTCATCCCTTAAATA
388 TTCTTTTGCATGGAAATATTTTCTTTGCCATATTTTCCTTAAAATCAAAGTTCATCCCTTAAATA
* **
825715 AGACAAGCATCGATTCTTGTATT
453 AGACAAGCATCGATTCTCGTAAA
*
825738 AGGCTCCATTCTTTTCAAG
1 AGTCTCCATTCTTTTCAAG
825757 CCCATTCTTT
Statistics
Matches: 811, Mismatches: 139, Indels: 32
0.83 0.14 0.03
Matches are distributed among these distances:
471 3 0.00
472 73 0.09
473 253 0.31
474 324 0.40
475 70 0.09
476 87 0.11
477 1 0.00
ACGTcount: A:0.31, C:0.19, G:0.14, T:0.37
Consensus pattern (475 bp):
AGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCTTTCATTAGGATACACGACATTG
ATGCTTTGAGGTTGCAAGAAAAGCTTTTCTTTCCACTATTTTTGATAGAATCAAAGTTTGTCTCT
TAAATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTTAGGATTAGGCACTATAAACA
TAGTCTTCTCATAAGGATATACGATATTAATGTTTTGGTTTCGCAAGAAAGGCATTTTCCTAACC
AATTTTTGTAAAATCTAAGTTCGTGCCTCAAATTAGACAAACTTGGATTCTAGTAATGATCTTCT
TTCATTTTGTGATTAGGCACTATAAGCACATTCTCCTCATTAGGATAAATGATATTGATGATTTC
TTTTGCATGGAAATATTTTCTTTGCCATATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGA
CAAGCATCGATTCTCGTAAA
Found at i:826160 original size:809 final size:800
Alignment explanation
Indices: 825050--827024 Score: 2471
Period size: 809 Copynumber: 2.5 Consensus size: 800
825040 TTCCTAATCG
* * * *
825050 TTTTTGTAAAATCTAAGTTCGTGCCTCAAATTAGATAAACTTGGATTCTGGTAATGATTTTCTTT
1 TTTTTGTAAAGTCTAAGCTCGTGCCTCAAATTAGACAAACTTGGATTCTAGTAATGATTTTCTTT
* * *
825115 CATTTTGTGATTAGGCACTATAAGCATATTCTCCTCATTAGGATAAATGATATTGATGATTTCTT
66 TATTTTGTGATTAGGCACTATAAGCACATTCTCCTCATTAGGATAAATGATATTGATCATTTCTT
* *
825180 TTG-ATGGAAATATTTTCTTTGCCTTATTTTCCTTAAAATCAAAGTTCATCCCCTAAATAAGACA
131 TTGCATGGAAATCTTTTCTTTGCCTTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACA
* * * * *
825244 AGCATCGATTCTCGTAAAAGTCCTTATTCTTCTCAAGATTGGGAACCAAAAACACAATCCTTTCA
196 AGCATCGATTCTCGTAAAAGT-CTTATTCTT-TTAGGATTAGGAACCTAAAACACAATCCTTTCT
* *
825309 TTAGGATACACGACATTGATGCTTTGAGGTCGCAAA-AAAAGCTTTTCTTTCCA-CTATTTTAGA
259 TTAGGATACATGACATTGATGCTTT--GGTGGCAAAGAAAAGCTTTTCTTTCCATC-ATTTTAGA
* * * *
825372 TAGAATCAAAGTTTGTCTTTTAAATAAGACAAACATGAATACTCACACTAATCCCCATTCTTTCC
321 CAGAATCAAAGTTTGCCTCTTAAATAAGACAAACATGAATACTCACACTAATCCCCAGTCTTTCC
* * * * *
825437 AAG-ATTAGGCCCCATAAAC-ATAGTCTTATTATGAGGATTCACGTTATTGATGTTTTGGTTTCG
386 -AGCATTAGGCACCATAAACGAT-GTCTTATCATGAGGATACACGATATTAATGTTTTGGTTTCG
* *
825500 CAAGAAAGGCATTTTT-CTTACCAATTTTTGTAAAATCTAAGTTCGTGCCTCAAATAAGACAAAC
449 CAAGAAAGGC-TTTTTCCTCACCAATTTTTGTAAAATCTAAGTTCATGCCTCAAATAAGACAAAC
* * *** *
825564 TTGGATTCTAGTAATGATCTTCTTTCTTTTTGTGATTAGGTACTAGAAGCACATTCTCCTCATTA
513 TTGGA-TCTAGTAATGATCTTCATTCATTTTGTGATTACACACTAGAAACACATTCTCCTCATTA
*
825629 GGATAAATGATATTGATCATATTCATTTGCATGGAAATCTTTTCTTTGCCATATTTTCCTGAAAA
577 GGATAAATGATATTGATCAT-TTCATTTGCATGAAAATCTTTTCTTTGCCATATTTTCCTGAAAA
* * *
825694 TCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCT-TGTATTAGGCTCCATTCTTTTCAAG-
641 TCAAAGTTCATCCCTTAAATAAGACAAGCATCGACTCTCT-TAATAGCCTCCATTCTTTTCAAGC
* ** **
825757 CCCATTCTTTTCAGGATTAGGCAT-TGTAAACATGGTCTTCTTCTCATTAGGATATGCAATGTTG
705 CCCATTCTTTTAAGGATTAGGC-TCTGTAAACATGG----AGTCTCATTAGGATATGCAACATTG
* *
825821 ATTTTGGTTTCGCAACAAAGGTATTTTTCCCACCAA
765 ATTTTCGTTTCGCAACAAAGGCATTTTTCCCACCAA
* *
825857 TTTTTGTAAAGTCTAAGCTCGTACCTCAAATTAGACAAACTTGGATTCTAGTAATGATCTTCTTT
1 TTTTTGTAAAGTCTAAGCTCGTGCCTCAAATTAGACAAACTTGGATTCTAGTAATGATTTTCTTT
* * * * *
825922 TATTTTGTGATTAGGTACTAAAAACACATTCTCCTCATTAGGATAAATGATAGTGATCATATTCA
66 TATTTTGTGATTAGGCACTATAAGCACATTCTCCTCATTAGGATAAATGATATTGATCAT-TTCT
* *
825987 TTTGCATGGAAATCTTTTCTTTGCCTTATTCTCCTTAAAATCAATGTTCATCCCTTAAATAAGAC
130 TTTGCATGGAAATCTTTTCTTTGCCTTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGAC
* ***
826052 AAGCATCGATTCTCGTAATAGTCTTAATTCATTTTAGGATTAGGAACCTAAAACATGGTCCTTTC
195 AAGCATCGATTCTCGTAAAAGTCTT-ATTC-TTTTAGGATTAGGAACCTAAAACACAATCCTTTC
* * * *
826117 TTTAGGATACTTGACATTGATGCTTTGGTGGCACAAGAAAAGCTTTTTTTTCCATCGTTTTGGAC
258 TTTAGGATACATGACATTGATGCTTTGGTGGCA-AAGAAAAGCTTTTCTTTCCATCATTTTAGAC
* * * * * * * * * *
826182 AAAATCAAAGTTTGCCACTTAAAGAAAACAAACACGAATAGTCATACTAATCCCTAGTCTTTTCG
322 AGAATCAAAGTTTGCCTCTTAAATAAGACAAACATGAATACTCACACTAATCCCCAGTCTTTCCA
* * * * *
826247 GCATTAGGCACCTTAAACGGTGTCTTCTCATTAGGATACACGATATTAATGTTTTGGTTTCGTAA
387 GCATTAGGCACCATAAACGATGTCTTATCATGAGGATACACGATATTAATGTTTTGGTTTCGCAA
* * * *
826312 GAAAGGCTTTTTCCTCACCAATTTTTGTAAAGTCTAAGTTCATTCCTCAAATGAGATAAACTTGG
452 GAAAGGCTTTTTCCTCACCAATTTTTGTAAAATCTAAGTTCATGCCTCAAATAAGACAAACTTGG
* * * **
826377 ATCTGGTAATGATCTTCATTCATTTTGTGATTACACACTATAAACACATTCTCTTTTTTAGGATA
517 ATCTAGTAATGATCTTCATTCATTTTGTGATTACACACTAGAAACACATTCTCCTCATTAGGATA
* ** * * * *
826442 AATGATATTGATGATTTTTTTTGCATGAAAATCTTTTCTTTGCCCTGTTTTCCTTAAAATCAATG
582 AATGATATTGATCATTTCATTTGCATGAAAATCTTTTCTTTGCCATATTTTCCTGAAAATCAAAG
826507 TTCATCCCTTAAATAAGACAAGCATCGACTCTCTTAATAGCCTCCATTCTTTTCAAGCCCCATTC
647 TTCATCCCTTAAATAAGACAAGCATCGACTCTCTTAATAGCCTCCATTCTTTTCAAGCCCCATTC
*
826572 TTTTAAGGATTAGGCTCTGTAAACATGGAGTCTCATTAGGATATGCGACATTGATTTTCGTTTCG
712 TTTTAAGGATTAGGCTCTGTAAACATGGAGTCTCATTAGGATATGCAACATTGATTTTCGTTTCG
* *
826637 CAAGATAGGCATTTTTCCCACCAA
777 CAACAAAGGCATTTTTCCCACCAA
* * * *
826661 TTTTTGAAAAGTCTAAACTCGTGCCTCAAATTAGACAAAC-TAGATTCTAGTAATGATTTTCATT
1 TTTTTGTAAAGTCTAAGCTCGTGCCTCAAATTAGACAAACTTGGATTCTAGTAATGATTTTCTTT
* * * * *
826725 TATTTTGTGAATAGGCACTATAAGCACATTCTCTTAATTAGGATAAATGATATTTATTATTTTCT
66 TATTTTGTGATTAGGCACTATAAGCACATTCTCCTCATTAGGATAAATGATATTGATCA-TTTCT
* * * *
826790 TTTGCCTAGAAATCTTTTCTTTGTCC-TATTTTCCATAAAATCAAAGTTTATCCCTTAAATAAGA
130 TTTGCATGGAAATCTTTTCTTTG-CCTTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGA
* * * * * * * * *
826854 TATGCATCGATTCCCGCAAAAGTCTCCATTCTTTTCAGGATTTGGAGCCTAAAACACATTCCCAT
194 CAAGCATCGATTCTCGTAAAAGTCT-TATTCTTTT-AGGATTAGGAACCTAAAACACAAT-CCTT
* * ** * * * * *
826919 T-TTTAGGATACATGGCATTGAAGCTTTAATGTCATAAGAAAAGCTTCTCTTTTCGTCATTTTTG
256 TCTTTAGGATACATGACATTGATGCTTTGGTGGCA-AAGAAAAGCTTTTCTTTCCATCATTTTAG
* **
826983 ACAGAATCAAAGCTTGCCTCCAAAATAAGACAAACATGAATA
320 ACAGAATCAAAGTTTGCCTCTTAAATAAGACAAACATGAATA
827025 GTAGTACTAT
Statistics
Matches: 1000, Mismatches: 150, Indels: 40
0.84 0.13 0.03
Matches are distributed among these distances:
802 4 0.00
803 256 0.26
804 96 0.10
807 214 0.21
808 118 0.12
809 308 0.31
810 4 0.00
ACGTcount: A:0.30, C:0.18, G:0.14, T:0.37
Consensus pattern (800 bp):
TTTTTGTAAAGTCTAAGCTCGTGCCTCAAATTAGACAAACTTGGATTCTAGTAATGATTTTCTTT
TATTTTGTGATTAGGCACTATAAGCACATTCTCCTCATTAGGATAAATGATATTGATCATTTCTT
TTGCATGGAAATCTTTTCTTTGCCTTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACA
AGCATCGATTCTCGTAAAAGTCTTATTCTTTTAGGATTAGGAACCTAAAACACAATCCTTTCTTT
AGGATACATGACATTGATGCTTTGGTGGCAAAGAAAAGCTTTTCTTTCCATCATTTTAGACAGAA
TCAAAGTTTGCCTCTTAAATAAGACAAACATGAATACTCACACTAATCCCCAGTCTTTCCAGCAT
TAGGCACCATAAACGATGTCTTATCATGAGGATACACGATATTAATGTTTTGGTTTCGCAAGAAA
GGCTTTTTCCTCACCAATTTTTGTAAAATCTAAGTTCATGCCTCAAATAAGACAAACTTGGATCT
AGTAATGATCTTCATTCATTTTGTGATTACACACTAGAAACACATTCTCCTCATTAGGATAAATG
ATATTGATCATTTCATTTGCATGAAAATCTTTTCTTTGCCATATTTTCCTGAAAATCAAAGTTCA
TCCCTTAAATAAGACAAGCATCGACTCTCTTAATAGCCTCCATTCTTTTCAAGCCCCATTCTTTT
AAGGATTAGGCTCTGTAAACATGGAGTCTCATTAGGATATGCAACATTGATTTTCGTTTCGCAAC
AAAGGCATTTTTCCCACCAA
Found at i:827083 original size:803 final size:800
Alignment explanation
Indices: 825050--827176 Score: 2467
Period size: 803 Copynumber: 2.6 Consensus size: 800
825040 TTCCTAATCG
* * *
825050 TTTTTGTAAAA-TCTAAGTTCGTGCCTCAAATTAGATAAACTTGGATTCTGGTAATGATTTTCTT
1 TTTTTG-AAAAGTCTAAGCTCGTGCCTCAAATTAGACAAACTTGGATTCTAGTAATGATTTTCTT
* *
825114 TCATTTTGTGATTAGGCACTATAAGCATATTCTCCTCATTAGGATAAATGATATTGATGA-TTTC
65 T-ATTTTGTGATTAGGCACTATAAGCACATTCTCCTCATTAGGATAAATGATATTGATCATTTTC
* *
825178 TTTTG-ATGGAAATATTTTCTTTGCCTTATTTTCCTTAAAATCAAAGTTCATCCCCTAAATAAGA
129 TTTTGCATGGAAATCTTTTCTTTGCCTTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGA
* * * * *
825242 CAAGCATCGATTCTCGTAAAAGTC-CTTATTCTTCTCAAGATTGGGAACCAAAAACACAATCCTT
194 CAAGCATCGATTCTCGTAAAAGTCTC-AATTCTTTTCAGGATTAGGAACCTAAAACACAATCCTT
* * * * *
825306 TCATTAGGATACACGACATTGATGCTTTGAGGTCGCAAAAAAAGCTTTTCTTTCCA-CTATTTTA
258 T--TTAGGATACATGACATTGATGCTTTGATGTCACAAGAAAAGC-TTTCTTTTCATC-ATTTTA
* * * * *
825370 GATAGAATCAAAGTTTGTCTTTTAAATAAGACAAACATGAATACTCACACTAATCCCCATTCTTT
319 GACAGAATCAAAGTTTGCCTCTTAAATAAGACAAACATGAATAGTCATACTAAT-CCCATTCTTT
** * * * * * * *
825435 CCAAGATTAGGCCCCATAAACATAGTCTTATTATGAGGATTCACGTTATTGATGTTTTGGTTTCG
383 TTAAGATTAGGCACCATAAACACATTCTTATCATTAGGATACACGATATTGATGTTTTGGTTTCG
* * *
825500 CAAGAAAGGCATTTTTCTTACCAATTTTTGTAAAATCTAAGTTCGTGCCTCAAATAAGACAAACT
448 TAAGAAAGGC-TTTTTCTCACCAATTTTTGTAAAATCTAAGTTCATGCCTCAAATAAGACAAACT
* * *** *
825565 TGGATTCTAGTAATGATCTTCTTTCTTTTTGTGATTAGGTACTAGAAGCACATTCTCCTCATTAG
512 TGGATTCTAGTAATGATCTTCATTCATTTTGTGATTACACACTAGAAACACATTCTCCTCATTAG
*
825630 GATAAATGATATTGATCATATTCATTTGCATGGAAATCTTTTCTTTGCCATATTTTCCTGAAAAT
577 GATAAATGATATTGATCATATTCATTTGCATGAAAATCTTTTCTTTGCCATATTTTCCTGAAAAT
* * *
825695 CAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTTGTATTAGGCTCCATTCTTTTCAAGCCC
642 CAAAGTTCATCCCTTAAATAAGACAAGCATCGACTCTTGTAATAGCCTCCATTCTTTTCAAGCCC
* ** **
825760 ATTCTTTTCAGGATTAGGCATTGTAAACATGGTCTTCTTCTCATTAGGATATGCAATGTTGATTT
707 ATTCTTTTAAGGATTAGGCATTGTAAACATGG---TAGTCTCATTAGGATATGCAACATTGATTT
* *
825825 TGGTTTCGCAACAAAGGTATTTTTCCCACCAA
769 TCGTTTCGCAACAAAGGCATTTTTCCCACCAA
* * *
825857 TTTTTGTAAAGTCTAAGCTCGTACCTCAAATTAGACAAACTTGGATTCTAGTAATGATCTTCTTT
1 TTTTTGAAAAGTCTAAGCTCGTGCCTCAAATTAGACAAACTTGGATTCTAGTAATGATTTTC-TT
* * * * * *
825922 TATTTTGTGATTAGGTACTAAAAACACATTCTCCTCATTAGGATAAATGATAGTGATCATATTCA
65 TATTTTGTGATTAGGCACTATAAGCACATTCTCCTCATTAGGATAAATGATATTGATCATTTTCT
* *
825987 TTTGCATGGAAATCTTTTCTTTGCCTTATTCTCCTTAAAATCAATGTTCATCCCTTAAATAAGAC
130 TTTGCATGGAAATCTTTTCTTTGCCTTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGAC
* * ***
826052 AAGCATCGATTCTCGTAATAGTCTTAATTCATTTT-AGGATTAGGAACCTAAAACATGGTCCTTT
195 AAGCATCGATTCTCGTAAAAGTCTCAATTC-TTTTCAGGATTAGGAACCTAAAACACAATCC-TT
* * * * * *
826116 CTTTAGGATACTTGACATTGATGCTTTGGTGGCACAAGAAAAGCTTTTTTTTCCATCGTTTTGGA
258 -TTTAGGATACATGACATTGATGCTTTGATGTCACAAGAAAAGCTTTCTTTT-CATCATTTTAGA
* * * * * *
826181 CAAAATCAAAGTTTGCCACTTAAAGAAAACAAACACGAATAGTCATACTAATCCCTAGTC-TTTT
321 CAGAATCAAAGTTTGCCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCC-ATTCTTTTT
** * ** * *
826245 CGGCATTAGGCACCTTAAAC-GGTGTCTTCTCATTAGGATACACGATATTAATGTTTTGGTTTCG
385 AAG-ATTAGGCACCATAAACACAT-TCTTATCATTAGGATACACGATATTGATGTTTTGGTTTCG
* * * *
826309 TAAGAAAGGCTTTTTCCTCACCAATTTTTGTAAAGTCTAAGTTCATTCCTCAAATGAGATAAACT
448 TAAGAAAGGCTTTTT-CTCACCAATTTTTGTAAAATCTAAGTTCATGCCTCAAATAAGACAAACT
* * * **
826374 TGGA-TCTGGTAATGATCTTCATTCATTTTGTGATTACACACTATAAACACATTCTCTTTTTTAG
512 TGGATTCTAGTAATGATCTTCATTCATTTTGTGATTACACACTAGAAACACATTCTCCTCATTAG
* ** * * *
826438 GATAAATGATATTGATGAT-TTTTTTTGCATGAAAATCTTTTCTTTGCCCTGTTTTCCTTAAAAT
577 GATAAATGATATTGATCATATTCATTTGCATGAAAATCTTTTCTTTGCCATATTTTCCTGAAAAT
*
826502 CAATGTTCATCCCTTAAATAAGACAAGCATCGACTCTCT-TAATAGCCTCCATTCTTTTCAAGCC
642 CAAAGTTCATCCCTTAAATAAGACAAGCATCGACTCT-TGTAATAGCCTCCATTCTTTTCAAG-C
*
826566 CCATTCTTTTAAGGATTAGGC-TCTGTAAACATGG-AGTCTCATTAGGATATGCGACATTGATTT
705 CCATTCTTTTAAGGATTAGGCAT-TGTAAACATGGTAGTCTCATTAGGATATGCAACATTGATTT
* *
826629 TCGTTTCGCAAGATAGGCATTTTTCCCACCAA
769 TCGTTTCGCAACAAAGGCATTTTTCCCACCAA
* *
826661 TTTTTGAAAAGTCTAAACTCGTGCCTCAAATTAGACAAAC-TAGATTCTAGTAATGATTTTCATT
1 TTTTTGAAAAGTCTAAGCTCGTGCCTCAAATTAGACAAACTTGGATTCTAGTAATGATTTTC-TT
* * * * *
826725 TATTTTGTGAATAGGCACTATAAGCACATTCTCTTAATTAGGATAAATGATATTTATTATTTTCT
65 TATTTTGTGATTAGGCACTATAAGCACATTCTCCTCATTAGGATAAATGATATTGATCATTTTCT
* * * *
826790 TTTGCCTAGAAATCTTTTCTTTGTCC-TATTTTCCATAAAATCAAAGTTTATCCCTTAAATAAGA
130 TTTGCATGGAAATCTTTTCTTTG-CCTTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGA
* * * * * * * *
826854 TATGCATCGATTCCCGCAAAAGTCTCCATTCTTTTCAGGATTTGGAGCCTAAAACACATTCCCAT
194 CAAGCATCGATTCTCGTAAAAGTCTCAATTCTTTTCAGGATTAGGAACCTAAAACACAAT-CC-T
* * * * * *
826919 TTTTAGGATACATGGCATTGAAGCTTTAATGTCATAAGAAAAGCTTCTCTTTTCGTCATTTTTGA
257 TTTTAGGATACATGACATTGATGCTTTGATGTCACAAGAAAAGCTT-TCTTTTCATCATTTTAGA
* ** *
826984 CAGAATCAAAGCTTGCCTCCAAAATAAGACAAACATGAATAGT-AGTACTATTCCACATTCTTTT
321 CAGAATCAAAGTTTGCCTCTTAAATAAGACAAACATGAATAGTCA-TACTAATCC-CATTCTTTT
* ** * * * * *
827048 TAAGATTCGAAACCAAAAACACATTCCCT-TCATTAGGATACACGACATTGATGCTTTGGTGTCG
384 TAAGATTAGGCACCATAAACACATT-CTTATCATTAGGATACACGATATTGATGTTTTGGTTTCG
* ** *
827112 TAAGAAAAGC-TTTTCTTTCCAACGTTTTTGATAAAATCAAAGTT--TGCCTCTTAAATAAGACA
448 TAAGAAAGGCTTTTTCTCACCAA--TTTTTG-TAAAATCTAAGTTCATGCCTC--AAATAAGACA
827174 AAC
508 AAC
827177 ATGAATAGTA
Statistics
Matches: 1106, Mismatches: 183, Indels: 65
0.82 0.14 0.05
Matches are distributed among these distances:
801 6 0.01
802 14 0.01
803 324 0.29
804 131 0.12
806 3 0.00
807 200 0.18
808 127 0.11
809 294 0.27
810 6 0.01
811 1 0.00
ACGTcount: A:0.31, C:0.18, G:0.14, T:0.37
Consensus pattern (800 bp):
TTTTTGAAAAGTCTAAGCTCGTGCCTCAAATTAGACAAACTTGGATTCTAGTAATGATTTTCTTT
ATTTTGTGATTAGGCACTATAAGCACATTCTCCTCATTAGGATAAATGATATTGATCATTTTCTT
TTGCATGGAAATCTTTTCTTTGCCTTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACA
AGCATCGATTCTCGTAAAAGTCTCAATTCTTTTCAGGATTAGGAACCTAAAACACAATCCTTTTT
AGGATACATGACATTGATGCTTTGATGTCACAAGAAAAGCTTTCTTTTCATCATTTTAGACAGAA
TCAAAGTTTGCCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCATTCTTTTTAAGATT
AGGCACCATAAACACATTCTTATCATTAGGATACACGATATTGATGTTTTGGTTTCGTAAGAAAG
GCTTTTTCTCACCAATTTTTGTAAAATCTAAGTTCATGCCTCAAATAAGACAAACTTGGATTCTA
GTAATGATCTTCATTCATTTTGTGATTACACACTAGAAACACATTCTCCTCATTAGGATAAATGA
TATTGATCATATTCATTTGCATGAAAATCTTTTCTTTGCCATATTTTCCTGAAAATCAAAGTTCA
TCCCTTAAATAAGACAAGCATCGACTCTTGTAATAGCCTCCATTCTTTTCAAGCCCATTCTTTTA
AGGATTAGGCATTGTAAACATGGTAGTCTCATTAGGATATGCAACATTGATTTTCGTTTCGCAAC
AAAGGCATTTTTCCCACCAA
Found at i:827225 original size:159 final size:158
Alignment explanation
Indices: 826904--827751 Score: 484
Period size: 159 Copynumber: 5.3 Consensus size: 158
826894 TTTGGAGCCT
* * * ** *
826904 AAAACACATTCCCATT-TTTAGGATACATGGCATTGAAGCTTTAATGTCATAAGAAAAGCTTCTC
1 AAAACACATTCCC-TTCATTAGGATACATGACATTGATGCTTTGGTGTCATAAGAAAAGCTTTTC
** * * * ** * *
826968 TTTTCGTCATTTTTGACAGAATCAAAGCTTGCCTCCAAAATAAGACAAACATGAATAGTAGTACT
65 -TTTCCACATTTTTGATAAAATCAAAGTTTGCCTCTTAAATAAGACAAACATGAATACTAATACT
* * **
827033 ATTCCACATTCTTTT-TAAGATTCGAAACCA
129 AGTCCACATTCTTTTCT-AGATTAGGCACCA
* *
827063 AAAACACATTCCCTTCATTAGGATACACGACATTGATGCTTTGGTGTCGTAAGAAAAGCTTTTCT
1 AAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCATAAGAAAAGCTTTTCT
* *
827128 TTCCAACGTTTTTGATAAAATCAAAGTTTGCCTCTTAAATAAGACAAACATGAATAGTAATACTA
66 TTCC-ACATTTTTGATAAAATCAAAGTTTGCCTCTTAAATAAGACAAACATGAATACTAATACTA
* * **
827193 GTCCCCATTCTTTTCTGGATTAGGCATAA
130 GTCCACATTCTTTTCTAGATTAGGCACCA
** * * * * * * *
827222 AAAACGTAGT-CTTCTCATAAAGATACATGATATTGATGCTTTGGT-TTAGTAAGAAAGGC-TTT
1 AAAACACATTCCCT-TCATTAGGATACATGACATTGATGCTTTGGTGTCA-TAAGAAAAGCTTTT
* * * * * * * *
827284 CTTCCCACCAATTTTTG-TAAAGTCTAAGTTCATGCCTC--AAATAAGCCAAACTTGGATTCCAA
64 CTTTCCA-C-ATTTTTGATAAAATCAAAGTT--TGCCTCTTAAATAAGACAAACATGAATACTAA
* * ** * ** **
827346 CAAT-GATCTTCATTCATTTTGT-GATTACACACTG
125 TACTAG-TCCACATTC-TTTTCTAGATTAGGCACCA
* * * * * * ** * * * * * *
827380 TAAACACATTCTCC-TCATTAGGATAAAGGATATTAATGATTTTCTTTTATATGGAAATCTTTTA
1 AAAACACATTC-CCTTCATTAGGATACATGACATTGATGCTTTGGTGTCATAAGAAAAGCTTTTC
*** *** * * * * **
827444 TTTGCC-CTATTTTCCTTAAAATCAAAGTTCATCTCTTAGATAAGACAAGCATCAATTCTCGCTA
65 TTT-CCAC-ATTTTTGATAAAATCAAAGTTTGCCTCTTAAATAAGACAAACATGAATACT-AATA
* * * * * *
827508 -AAGTCCATACTCTTTTCAAGATTGGGAACCA
127 CTAGTCCACATTCTTTTCTAGATTAGGCACCA
* * *
827539 AAAACACAATCCCTTCATTAGGATACATGACATTGATGCTTTGGGGTCACAAGAAAAGCTTTTCT
1 AAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCATAAGAAAAGCTTTTCT
* * * *
827604 TTCCAC-TGTTTCTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATCAATACTCATACT
66 TTCCACAT-TTT-TGATAAAATCAAAGTTTGCCTCTTAAATAAGACAAACATGAATACTAATACT
* * *
827668 AATCCCCATTCTTTTCAAGATTAGGCACCA
129 AGTCCACATTCTTTTCTAGATTAGGCACCA
* * * * * * * * *
827698 TAAACATAGT-CTTCTCATTAGGATACAGGATATTGGTGCTTTGGTTTCGTAAGA
1 AAAACACATTCCCT-TCATTAGGATACATGACATTGATGCTTTGGTGTCATAAGA
827752 TAGGTTTTTT
Statistics
Matches: 509, Mismatches: 152, Indels: 56
0.71 0.21 0.08
Matches are distributed among these distances:
157 6 0.01
158 119 0.23
159 372 0.73
160 12 0.02
ACGTcount: A:0.33, C:0.19, G:0.14, T:0.34
Consensus pattern (158 bp):
AAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCATAAGAAAAGCTTTTCT
TTCCACATTTTTGATAAAATCAAAGTTTGCCTCTTAAATAAGACAAACATGAATACTAATACTAG
TCCACATTCTTTTCTAGATTAGGCACCA
Found at i:828767 original size:475 final size:471
Alignment explanation
Indices: 827039--829797 Score: 3116
Period size: 475 Copynumber: 5.8 Consensus size: 471
827029 TACTATTCCA
* * * *
827039 CATTCTTTTTAAGATTCGAAACCAAAAACACATTCCCTTCATTAGGATACACGACATTGATGCTT
1 CATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTT
* * * *
827104 TGGTGTCGTAAGAAAAGCTTTTCTTTCCAACGTTTTTGATAAAATCAAAGTTTGCCTCTTAAATA
66 TGGTGTCGCAAGAAAAGCCTTTCTTTCC-AC-TTTTTGATAGAATCAAAGTTTGTCTCTTAAATA
* * * ** * *
827169 AGACAAACATGAATAGTAATACTAGTCCCCATTCTTTTCT-GGATTAGGCATAAAAAACGTAGTC
129 AGACAAACATGAATACTCATACTAATCCCCATTCTTTT-TAGGATTAGGCACCATAAACATAGTC
* * *** * * *
827233 TTCTCATAAAGATACATGATATTGATGCTTTGGTTTAGTAAGAAAGGC-TTTCTTCCCACCAATT
193 TTCTCATTAGGATATGCGATATTGATGTTTTGGTTTTGCAAGAAAGGCATTT-TTCCCACCAATT
* * **
827297 TTTGTAAAGTCTAAGTTCATGCCTCAAATAAGC-CAAACTTGGATTCCAACAATGATCTTCATTC
257 TTTGTAAAGTCTAAGTTCATGCCTCAAATGA-CACAAACTTGGATTCTAGTAATGATCTTCATTC
* ** * * *
827361 ATTTTGTGATTACACACTGTAAACACATTCTCCTCATTAGGATAAAGGATATTAATGATTTTCTT
321 ATTTTATGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTT
** * * *
827426 TTATATGGAAATCTTTTATTTGCCCTATTTTCCTTAAAATCAAAGTTCATCTCTTAGATAAGACA
386 TTGCAT-GAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACA
827491 AGCATCAATTCTCGCTAAAGT-C
450 AGCATCAATTCTCG-TAAAGTCC
*
827513 CATACTCTTTTCAAGATTGGGAACCAAAAACACAATCCCTTCATTAGGATACATGACATTGATGC
1 CAT--TCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGC
* * *
827578 TTTGGGGTCACAAGAAAAGCTTTTCTTTCCACTGTTTCTGATAGAATCAAAGTTTGTCTCTTAAA
64 TTTGGTGTCGCAAGAAAAGCCTTTCTTTCCACT-TTT-TGATAGAATCAAAGTTTGTCTCTTAAA
* * *
827643 TAAGACAAACATCAATACTCATACTAATCCCCATTCTTTTCAAGATTAGGCACCATAAACATAGT
127 TAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTTAGGATTAGGCACCATAAACATAGT
* * * * * * **
827708 CTTCTCATTAGGATACAG-GATATTGGTGCTTTGGTTTCGTAAGATAGGTTTTTTTCCCACCAAT
192 CTTCTCATTAGGATA-TGCGATATTGATGTTTTGGTTTTGCAAGAAAGGCATTTTTCCCACCAAT
* * * * * * * * * * * * *
827772 TTTTGTGAAGTCTAAGCTCGTGCTTCAAATAAGAGAAGCATGGATTCCATTAACGATCTTCACTC
256 TTTTGTAAAGTCTAAGTTCATGCCTCAAATGACACAAACTTGGATTCTAGTAATGATCTTCATTC
* * * * *
827837 ATTTTGTGATTACGCACTGTAAACACATTCTTCTCATTAGGAAAAATGATATTGATGATTTTCTT
321 ATTTTATGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTT
* * * * * *
827902 TTGCATGATAATATTTTCTTTGCCCAATTTTCCGTAAAAT---A-TTCATCCTTTAGATAAGAAA
386 TTGCATGA-AATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACA
*
827963 AGCATCGATTCTCGTTAAAGTCTC
450 AGCATCAATTCTCG-TAAAGTC-C
* * * ** ** *
827987 TATTCTTTTCAAGATTGGGAACCAAAAACAAAATCCCTTTGTTAGGATACACAACATTAATGCTT
1 CATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTT
* * * * *
828052 TGGGGTCGCAAG-AAA-CCTTTTCTTTCCACTGTTTTTCATAAAATAAAAGTTTGTCTCCTAAAT
66 TGGTGTCGCAAGAAAAGCC-TTTCTTTCCAC--TTTTTGATAGAATCAAAGTTTGTCTCTTAAAT
* * *
828115 AAGACAAATATGAATACTCATACTAATTCCCATTCTTTTTAGGATTAAGCACCATAAACATAGTC
128 AAGACAAACATGAATACTCATACTAATCCCCATTCTTTTTAGGATTAGGCACCATAAACATAGTC
* *** ** * * * *
828180 TTCTCATTAAGATACATGATATTGATGATTTTTTTTTTGCAAGAAGGGC-TTTTTCCATATCAAA
193 TTCTCATTAGGATATGCGATATTGATG-TTTTGGTTTTGCAAGAAAGGCATTTTTCC-CACCAAT
* * * * * *
828244 TTTTGTAAAGTCTAAGTTCATGTCTCAAATGAGACAAACATGGATTCTAGCAATGATCATCTTTC
256 TTTTGTAAAGTCTAAGTTCATGCCTCAAATGACACAAACTTGGATTCTAGTAATGATCTTCATTC
* * *
828309 ATTTTATGATTAGGCATTATAAACACATTCTCCACATTACGATAAATGATATTGATGATTTTCTT
321 ATTTTATGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTT
* * * *
828374 TTGCTTGAAATTTTTTTTTTTGCCCTATTTTCTTTAAAATCAAAGTTCATCCCTTAAATAA-ACA
386 TTGCATGAAA-TCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACA
** * *
828438 AGCATCGTTTCTTGTAATAGTCTT
450 AGCATCAATTCTCGTAA-AGTC-C
* * * *
828462 CATTCTTTTCATGATTGGGAATCAAAAAGACATTCCCTTCATTAGGATACATGATATTGATGCTT
1 CATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTT
* *
828527 TGGTGTCGCAAAAAAAGCCTTTCTTTCCATCATTTTTTATAGAATCAAAGTTTGTCTCTTAAATA
66 TGGTGTCGCAAGAAAAGCCTTTCTTTCCA-C-TTTTTGATAGAATCAAAGTTTGTCTCTTAAATA
* * *
828592 AGACAAACATGAATACTCATACTAATCCCAATTCTTTTTGGGATTAGGGACCATAAACATAGTCT
129 AGACAAACATGAATACTCATACTAATCCCCATTCTTTTTAGGATTAGGCACCATAAACATAGTCT
* * * * * *
828657 TTTCATTAGGATATGCGATATTGATATTTTGGTTTTGCAAGAAAGACATGTTTCTCACAAATTTT
194 TCTCATTAGGATATGCGATATTGATGTTTTGGTTTTGCAAGAAAGGCATTTTTCCCACCAATTTT
* * *
828722 TGTAAAGTCTAAGTTCGTGCCTCAAATGACACAAACTTAGATTCTAGTAATGATTTTCATTCATT
259 TGTAAAGTCTAAGTTCATGCCTCAAATGACACAAACTTGGATTCTAGTAATGATCTTCATTCATT
* * * * * *
828787 TTATGATTCGGCACAATAAGCACATTCTCTTCTTTAGGATAAATGATATCGATGATTTTCTTTTG
324 TTATGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTG
* *
828852 CATGAAAATCTTTTCTTTACCCTATTTTTCTTAAAATCAAAGTTCATCCCTTAAA-AAGACAAGC
389 CATG-AAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGC
*
828916 AT-ATTTTCTCGTAACAGTCTC
453 ATCA-ATTCTCGTAA-AGTC-C
* * * * * *
828937 CATTC-TTTCGATGATCGGGAACTAAAAATACATTCCCTTCCTTAGGATACATGACATAGATGCT
1 CATTCTTTTC-AAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCT
*
829001 TTGGTGTCGCAAGAAAAGCCTTT-TTCTCCATAGCTTTTAG-TAGAATCAAAGTTTGTCTCTTAA
65 TTGGTGTCGCAAGAAAAGCCTTTCTT-TCC--A-CTTTTTGATAGAATCAAAGTTTGTCTCTTAA
* *
829064 ATAAGACAAACATGAATACTCATACTAATCTCCATTCCTTTTAGGATTAGGCACCATAAACATAG
126 ATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTTAGGATTAGGCACCATAAACATAG
* * * ** * *
829129 TCTTCTTATTAGGATATGCGATATTGATGTTTCGGTTTCGTTAG-AAGGCATTTTTCCTACTAAT
191 TCTTCTCATTAGGATATGCGATATTGATGTTTTGGTTTTGCAAGAAAGGCATTTTTCCCACCAAT
* * *
829193 TTTTGTAAAGTCTAAATTCATGTCTCAAATGAGACAAACTTGGATTCTAGTAATGATCTTCATTC
256 TTTTGTAAAGTCTAAGTTCATGCCTCAAATGACACAAACTTGGATTCTAGTAATGATCTTCATTC
* * * * ** * *
829258 ATTCTGTGGTTAGGCACTATAAGCGTATTCTCCTCCTTACGATAAATGATATTGATGATTTT-TT
321 ATTTTATGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTT
* * * * * *
829322 TGGCATGAAAATCTCTTT-TTTGCCTTATTTTCCTTAAAATCAAAGTTAATCGCTTGAATAATAC
386 TTGCATG-AAATCT-TTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGAC
*
829386 AAGCATCAATTCTCATAACAGTCC
449 AAGCATCAATTCTCGTAA-AGTCC
* * *
829410 CTATTCTTTTCAAGATT-AGAATCCAAAAACACATTCTCTTCATTAAGATACATGACATTGATGC
1 C-ATTCTTTTCAAGATTGGGAA-CCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGC
* * *
829474 -TTGGTTATCACAAGTAAAGCCTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAA
64 TTTGG-TGTCGCAAGAAAAGCCTTTCTTTCCA-C-TTTTTGATAGAATCAAAGTTTGTCTCTTAA
* * *
829538 ATAAGACAAACATAAATACTCATACTAATCCCCATTCTTTTTAGGATTAGGGACCATAAACACAG
126 ATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTTAGGATTAGGCACCATAAACATAG
* * * *
829603 TTTTCTCATTAGGATATGCGATATTGATGTTTTGGTTTTGCAGGAAAGACATGTTTCCCACCAAT
191 TCTTCTCATTAGGATATGCGATATTGATGTTTTGGTTTTGCAAGAAAGGCATTTTTCCCACCAAT
* ** *
829668 TTTTGTAAAGCCTAAGTTCGCGTCTCAAATGACACAAACTTGGATTCTAGTAATGATCTTCATTC
256 TTTTGTAAAGTCTAAGTTCATGCCTCAAATGACACAAACTTGGATTCTAGTAATGATCTTCATTC
* * * * * * * *
829733 ATTTTATGATTCGGCACAATAAGCACATTCTCTTCTTTGGGATAAATGATAATGATGATTCTCTT
321 ATTTTATGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTT
829798 CTTCATTAAT
Statistics
Matches: 1942, Mismatches: 297, Indels: 90
0.83 0.13 0.04
Matches are distributed among these distances:
470 1 0.00
471 128 0.07
472 263 0.14
473 65 0.03
474 352 0.18
475 621 0.32
476 504 0.26
477 8 0.00
ACGTcount: A:0.31, C:0.18, G:0.14, T:0.37
Consensus pattern (471 bp):
CATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTT
TGGTGTCGCAAGAAAAGCCTTTCTTTCCACTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAG
ACAAACATGAATACTCATACTAATCCCCATTCTTTTTAGGATTAGGCACCATAAACATAGTCTTC
TCATTAGGATATGCGATATTGATGTTTTGGTTTTGCAAGAAAGGCATTTTTCCCACCAATTTTTG
TAAAGTCTAAGTTCATGCCTCAAATGACACAAACTTGGATTCTAGTAATGATCTTCATTCATTTT
ATGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCA
TGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATC
AATTCTCGTAAAGTCC
Found at i:830758 original size:476 final size:476
Alignment explanation
Indices: 829836--832636 Score: 3385
Period size: 476 Copynumber: 5.9 Consensus size: 476
829826 TTATCGTAAT
* * * *
829836 AGTCTCCATTCTTTCCACGATTGAGAACTAAAAACACATTCCCTT-ATTAGGATGCACGACATTG
1 AGTCTCCATTCTTTTCAAGATTGAGAACTAAAAACACATTCCCTTCATTAGGATACATGACATTG
* * * * *
829900 ATGCTTTAGTGTCACAAGAAAAAGATTTTTTTTTCA-CGATTTTT-AGTAGAATCAAAGTTTGTC
66 ATGCTTTGGTGTCACAAG-AAAAGCTTTTCTTTCCATC-ATTTTTGA-TAGAATTAAAGTTTGTC
* * *
829963 TCTTAAATTAGACAAACATCAATACTCATACTAATCCCCATTCTTTTT-AGGATTAGGCACCATA
128 TCTTAAATAAGACAAACATGAATAATCATACTAATCCCCATT-TTTTTCAGGATTAGGCACCATA
* * * * * * *
830027 AACATAGTCTTCTAATTAGGATATACGATATTGATG-TTTCGGTTTCGTAA-AAAGGC--ATTT-
192 AACATAGTCTTCTCATTAGGATACACGAAATTGGTGCTTT-GATTTCGCAAGAAAGGCTTTTTTC
* * ** * * * *
830087 CCACTAATTTTTGTAAAGTCTAAGTTCATGTCTCAAATGAGACAAACTTAGATTCTAGTAATAAT
256 CCACTAATTTTAGTAAAGTCTAAGTTCGTACCTCAAAAGAGACAAACATGGATTCTAGTAATGAT
* * * * * * ** *
830152 CTTCATTCATTCTGTGGTTAAGCACTATAAGCACATTCTCCTCCTTAGGATAAATGATATGGATG
321 CTTCTTTCATTTTATGATTAGGCACTATAAACACATTCTCCTCAATAGGATAAATGATATTGATG
* * * * * ** *
830217 CTTTTCTTTAGCATGGAAATCTCTTCTTTTCCTTATTTTCCTTAATGTCAAAGTTAATCCCTTAA
386 ATTTTCTTTTGCATGAAAATCTTTTCTTTACCTTATTTTCCTTAAAATCAAAGTTCATCCCTTAA
*
830282 ATAAGACAAGCATCGATTCTCGTAAC
451 ATAAGACAAGCATCGATTCTCATAAC
* * * * * * *
830308 AGTCCCCGTTCTTTTCAAGATTGGGATCTAAAAGCACATTCCCTTCATTAGGATATACGACATTG
1 AGTCTCCATTCTTTTCAAGATTGAGAACTAAAAACACATTCCCTTCATTAGGATACATGACATTG
*
830373 ATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCATCATTTTTGATAGAATCAAAGTTTGTCTCT
66 ATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCATCATTTTTGATAGAATTAAAGTTTGTCTCT
* * * *
830438 TAAATGAGACAAATATGAATAATCAAACTAATCCACATTTTTTTCAGGATTAGGCACCATAAACA
131 TAAATAAGACAAACATGAATAATCATACTAATCCCCATTTTTTTCAGGATTAGGCACCATAAACA
* * * ** *
830503 TAGTATTCTCATTAGGATACACAAAACTGGCACTTTGATTTCGCAAGAAAGGCTTTTTTCTCGA-
196 TAGTCTTCTCATTAGGATACACGAAATTGGTGCTTTGATTTCGCAAGAAAGGCTTTTTTC-CCAC
* * * *
830567 TAGTTTTAGTAAAGTCTAAGTTCGTGCCTCAAAAGAGATAAACGTGGATTCTAGTAATGATCTTC
260 TAATTTTAGTAAAGTCTAAGTTCGTACCTCAAAAGAGACAAACATGGATTCTAGTAATGATCTTC
* * *
830632 TTTCATTTTATGATTAGGCACTATAAACCCATTCTCCTCATTAGGATAAATGATATTGATGGTTT
325 TTTCATTTTATGATTAGGCACTATAAACACATTCTCCTCAATAGGATAAATGATATTGATGATTT
* *
830697 TCTTTTGCATAAAAATCTTTTCTTTACCTTATTTTCCTTAATATCAAAGTTCATCCCTTAAATAA
390 TCTTTTGCATGAAAATCTTTTCTTTACCTTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAA
* *
830762 GATAAGCATCGATTCTCATAAT
455 GACAAGCATCGATTCTCATAAC
* * * *
830784 AGTCTCCATTGTTTTCAGGATT-AGGAACCT-AAAATACATTCCCTCCATTAGGATACATGACAT
1 AGTCTCCATTCTTTTCAAGATTGA-GAA-CTAAAAACACATTCCCTTCATTAGGATACATGACAT
* * * *
830847 TGATGCTTTGGTGTCACAAGAAAAGTTTTTCTTTCCATCGTTTTTTATTGAATTAAAGTTTGTCT
64 TGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCATCATTTTTGATAGAATTAAAGTTTGTCT
* * * * * *
830912 CTTAAAAAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTCACGATTAGGCGCCATAAG
129 CTTAAATAAGACAAACATGAATAATCATACTAATCCCCATTTTTTTCAGGATTAGGCACCATAAA
* * * * * *
830977 CAAAGTCTTCTTATTAGGATACACGACATTGGTGCGTTAATTTCACAAGAAAGGCTTTTTTCCCA
194 CATAGTCTTCTCATTAGGATACACGAAATTGGTGCTTTGATTTCGCAAGAAAGGCTTTTTTCCCA
* * * * ** * *
831042 CCAATTTTTGTAAAGTCTAAGTTCTTATCTCAAATTAGACAAACATGCATTCTAATAATGATCTT
259 CTAATTTTAGTAAAGTCTAAGTTCGTACCTCAAAAGAGACAAACATGGATTCTAGTAATGATCTT
* * * * *
831107 CTTTCATTTTATGATTAGGTACTATAAATACATTCTCCTTAATAGAATAATTGATATTGATGATT
324 CTTTCATTTTATGATTAGGCACTATAAACACATTCTCCTCAATAGGATAAATGATATTGATGATT
* * * *
831172 TTCTTTTGCATGAAAATCTTCTCTTTA-CTCTATTTTCCCTAAAATTAAAGTTCATCCCATAAAT
389 TTCTTTTGCATGAAAATCTTTTCTTTACCT-TATTTTCCTTAAAATCAAAGTTCATCCCTTAAAT
* * *
831236 AAGACGAGCATCGAATCACATAAC
453 AAGACAAGCATCGATTCTCATAAC
* *
831260 TA-TCTCCATTCTTTTCAAGATTGAGAACTAAACATACATTCCCTTCATTAGGATACATGACATT
1 -AGTCTCCATTCTTTTCAAGATTGAGAACTAAAAACACATTCCCTTCATTAGGATACATGACATT
* * *
831324 GATGCTTTGATGTCACAAGAAAAGCTTTT-TCTCCATCATTTTTGATAGAATTATAGTTTGTCTC
65 GATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCATCATTTTTGATAGAATTAAAGTTTGTCTC
* * * * *
831388 TCAAATAAGACAAACATGAA-AACTTATACTAAT-CCCTTTTCTTTTCAGGGTTAGGCACCATAC
130 TTAAATAAGACAAACATGAATAA-TCATACTAATCCCCATTT-TTTTCAGGATTAGGCACCATAA
* * * * * *
831451 ACATAGTCTTCTCATTAAGATACACGAAACTAGTGCTTAG-TTTTGCAAGAAAGGCTTTTTTCCT
193 ACATAGTCTTCTCATTAGGATACACGAAATTGGTGCTTTGATTTCGCAAGAAAGGCTTTTTTCCC
* * * * *
831515 ACCAATTTTAGTAAAGCCTAAGTTCGTACCTCAAAAGAGATAAACGTGGATTCTAGTAGTGATCT
258 ACTAATTTTAGTAAAGTCTAAGTTCGTACCTCAAAAGAGACAAACATGGATTCTAGTAATGATCT
* * * * *
831580 TCCTTCATTTTATGATTAGGCACTATAAGA-ACATTCTCATCATTAGGATAAATGATATTGGTGG
323 TCTTTCATTTTATGATTAGGCACTATAA-ACACATTCTCCTCAATAGGATAAATGATATTGATGA
831644 TTTTCTTTTGCAT-AGAAATCTTTTCTTTA-CTCTATTTTCCTTAAAATCAAAGTTCATCCCTTA
387 TTTTCTTTTGCATGA-AAATCTTTTCTTTACCT-TATTTTCCTTAAAATCAAAGTTCATCCCTTA
* *
831707 AATAAGACAAGCATCGATTTTCATAAT
450 AATAAGACAAGCATCGATTCTCATAAC
* * *
831734 AGTCTCCATTGTTTTC-AGAATTG-GAACCAAAAACACATTCCCTTCATTAGGAGACATGACATT
1 AGTCTCCATTCTTTTCAAG-ATTGAGAACTAAAAACACATTCCCTTCATTAGGATACATGACATT
* * *
831797 GATGCTTTGGTGTCACAGGAAAAGCTTTTCTTTCCATCGTTTTTGATTGAATTAAAGTTTGTCTC
65 GATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCATCATTTTTGATAGAATTAAAGTTTGTCTC
* * * * *
831862 TTAAATATGACAAATATGAATACTCATACTAATCCCCATTCTTTTCACGATTAGGCACCATAAAC
130 TTAAATAAGACAAACATGAATAATCATACTAATCCCCATTTTTTTCAGGATTAGGCACCATAAAC
* * *
831927 ATAGTCTTCTCATTAGGATACACGATATTGGTGCTTTGATTTCGCAACAAAGGCTTTTTTCCTAC
195 ATAGTCTTCTCATTAGGATACACGAAATTGGTGCTTTGATTTCGCAAGAAAGGCTTTTTTCCCAC
* ** * *
831992 CAATTTTCTTAAAGTCTAAGTTCGTATCTCAAATA-AGACAAACATGCATTCTAGTAATGATCTT
260 TAATTTTAGTAAAGTCTAAGTTCGTACCTCAAA-AGAGACAAACATGGATTCTAGTAATGATCTT
* * *
832056 CTTTCATTTTATGATTAGGTACTATAAGCACATTCTCCTCAATAGGATAATTGATATTGATGATT
324 CTTTCATTTTATGATTAGGCACTATAAACACATTCTCCTCAATAGGATAAATGATATTGATGATT
* * *
832121 TTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTGATCCCTTAAATA
389 TTCTTTTGCATGAAAATCTTTTCTTTACCTTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATA
** * *
832186 AGATGAGCATCGAATCTCGTAAC
454 AGACAAGCATCGATTCTCATAAC
* *
832209 TA-TCTCCATTCTTTTCAAGATTGAGAACCAAAAACACATTCCCTTCATTAGGATAAATGACATT
1 -AGTCTCCATTCTTTTCAAGATTGAGAACTAAAAACACATTCCCTTCATTAGGATACATGACATT
* ** * ** * * *
832273 GATGCATTACTATCGTAAAAAAAGCTTTTTTTTCCATCGTTTTTGATAGAATTAAAGTTTGTCTC
65 GATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCATCATTTTTGATAGAATTAAAGTTTGTCTC
* * * * * *
832338 TTAAATAAGGCAAACATGAA-AACTCATACTAATCTCTATTCTTTTT-AGGGTTAGGCACGATAC
130 TTAAATAAGACAAACATGAATAA-TCATACTAATCCCCATT-TTTTTCAGGATTAGGCACCATAA
* * *
832401 ACATAGTCTTCGCATTAGGATACACGACATTGGTGCTTTG-GTTCAGCAAGAAAGG-TATTTTTC
193 ACATAGTCTTCTCATTAGGATACACGAAATTGGTGCTTTGATTTC-GCAAGAAAGGCT-TTTTTC
* *
832464 CCACTAATTTTAGTAAAGTCTAAGTTTGTGCCTCAAAAGAGACAAACATGGATTCTAGTAATGAT
256 CCACTAATTTTAGTAAAGTCTAAGTTCGTACCTCAAAAGAGACAAACATGGATTCTAGTAATGAT
* * * *
832529 CTTCTTTCATTTTATGATTAGGTACTATAAACACATTCTTCTTAATAGGATAATTGATATTGATG
321 CTTCTTTCATTTTATGATTAGGCACTATAAACACATTCTCCTCAATAGGATAAATGATATTGATG
* * *
832594 AATTTCTTTTGCATGAAAATCTATTT-TTTGCCATATTTTCCTT
386 ATTTTCTTTTGCATGAAAATCT-TTTCTTTACCTTATTTTCCTT
832637 GAAAGCTTAT
Statistics
Matches: 2002, Mismatches: 287, Indels: 76
0.85 0.12 0.03
Matches are distributed among these distances:
471 5 0.00
472 162 0.08
473 112 0.06
474 341 0.17
475 353 0.18
476 1016 0.51
477 13 0.01
ACGTcount: A:0.32, C:0.18, G:0.13, T:0.37
Consensus pattern (476 bp):
AGTCTCCATTCTTTTCAAGATTGAGAACTAAAAACACATTCCCTTCATTAGGATACATGACATTG
ATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCATCATTTTTGATAGAATTAAAGTTTGTCTCT
TAAATAAGACAAACATGAATAATCATACTAATCCCCATTTTTTTCAGGATTAGGCACCATAAACA
TAGTCTTCTCATTAGGATACACGAAATTGGTGCTTTGATTTCGCAAGAAAGGCTTTTTTCCCACT
AATTTTAGTAAAGTCTAAGTTCGTACCTCAAAAGAGACAAACATGGATTCTAGTAATGATCTTCT
TTCATTTTATGATTAGGCACTATAAACACATTCTCCTCAATAGGATAAATGATATTGATGATTTT
CTTTTGCATGAAAATCTTTTCTTTACCTTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAG
ACAAGCATCGATTCTCATAAC
Found at i:833405 original size:13 final size:13
Alignment explanation
Indices: 833387--833412 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
833377 CAATTTTTTG
833387 TGTATCGATACAT
1 TGTATCGATACAT
833400 TGTATCGATACAT
1 TGTATCGATACAT
833413 ATTTTGTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:833423 original size:32 final size:33
Alignment explanation
Indices: 833367--833430 Score: 112
Period size: 32 Copynumber: 2.0 Consensus size: 33
833357 TACAAGCCAA
*
833367 TGTATCGATACAATTTTTTGTGTATCGATACAT
1 TGTATCGATACAATATTTTGTGTATCGATACAT
833400 TGTATCGATAC-ATATTTTGTGTATCGATACA
1 TGTATCGATACAATATTTTGTGTATCGATACA
833431 AGTTTGGCTA
Statistics
Matches: 30, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
32 19 0.63
33 11 0.37
ACGTcount: A:0.28, C:0.12, G:0.16, T:0.44
Consensus pattern (33 bp):
TGTATCGATACAATATTTTGTGTATCGATACAT
Found at i:833424 original size:19 final size:19
Alignment explanation
Indices: 833367--833430 Score: 68
Period size: 19 Copynumber: 3.6 Consensus size: 19
833357 TACAAGCCAA
*
833367 TGTATCGATACAATTTTTTG
1 TGTATCGATAC-ATATTTTG
833387 TGTATCGATAC--A---T-
1 TGTATCGATACATATTTTG
833400 TGTATCGATACATATTTTG
1 TGTATCGATACATATTTTG
833419 TGTATCGATACA
1 TGTATCGATACA
833431 AGTTTGGCTA
Statistics
Matches: 37, Mismatches: 1, Indels: 13
0.73 0.02 0.25
Matches are distributed among these distances:
13 11 0.30
14 1 0.03
15 1 0.03
18 1 0.03
19 12 0.32
20 11 0.30
ACGTcount: A:0.28, C:0.12, G:0.16, T:0.44
Consensus pattern (19 bp):
TGTATCGATACATATTTTG
Found at i:834703 original size:475 final size:472
Alignment explanation
Indices: 833808--835372 Score: 1659
Period size: 475 Copynumber: 3.3 Consensus size: 472
833798 GATCCTAACA
* *
833808 TTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCATAATAG-TCCCTATT
1 TTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCAT-ACAGTTTCC-ATT
* * * * * * *
833872 CTTTTCAAGATTAGGATCCAAAAACATA-TTCCCTTCATT---A-A---G--A-TGATGCTTTGG
64 -TTTTTAAGAATGGGAACCAAAAACACATTTCCTTTCATTAGGATACGTGACATTGATGCTTTAG
* * * * **** *
833926 TGTCATACGAAAAGCTTTGCTTTCCATTGTTTTTCATAGAATCAAAGTTTGTCTCTTAAATAAAA
128 TGTCACAAGAAAAGCTTTTCTGTCCAGCCATTTTCATAGAATCAAAGTTTGTCTCTTAAATAAGA
* * * * *
833991 CAAACATGAATACCCATACTAGTCCCCATTCTTTTCAGGATTAGGGACAATAAACATAGACTTCT
193 CAAACATGAATACTCAAACTAATCCCCATTCTTTTCAGGATTAGGCACAATAAACATAGTCTTCT
* * *
834056 CATTAGGATACACAATACTGGTGCTTTGATTTTGCAAGAAAG--GTTTCTCACCAATTTTAGTAA
258 CATTAGGATACACGATACTGGTGCTTTGATTTTGCAAGAAAGTTTTTTCCCACCAATTTTAGTAA
* *
834119 AGTCCAAGTTCATCCTTCAAAAGAGACAAACATGGATTCTAGTAATGATCTT-TATTCATTTTAT
323 AGTCTAAGTTCATTC-TCAAAAGAGACAAACATGGATTCTAGTAATGATCTTCT-TTCATTTTAT
* *
834183 GATTAGGCACTATAAACACATTCTCATCATTGGGATAAATGATATTGATGATTTTCTTTTGCATG
386 GATTAGGCACTATAAACACATTCTCATCATTAGGATAAATGATATTGATGATTTTCTTTTGCATA
834248 GAAATCTTTTCTTTGCCTTATT
451 GAAATCTTTTCTTTGCCTTATT
* * ** *
834270 TTTCTTAAAAT-AGAAGTTCATCCCTTAAATAAGACAAACAAGGATTCTCATAGCAATTTCCATT
1 TTCCTTAAAATCA-AAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCATA-CAGTTTCCATT
* * * * *
834334 TTTTTAAGGACTGGGAACCTAAAACA-ATTTCCTTTCATTAGGATACGCGAAATTGATGCTTTGG
64 TTTTTAA-GAATGGGAACCAAAAACACATTTCCTTTCATTAGGATACGTGACATTGATGCTTTAG
* * * * * *
834398 TGTCGCAAGAAAAGCTTTTTTTTTC-GCCATTTTCATAGAATTAAAGTTTGTCTCTTATATAAGA
128 TGTCACAAGAAAAGCTTTTCTGTCCAGCCATTTTCATAGAATCAAAGTTTGTCTCTTAAATAAGA
* * * * * * * * * *
834462 CAAACATGAATACTCACAGTAAT-CCCATTTTTTTTAGGATTAGGCACTATGAAGATATTTTTCC
193 CAAACATGAATACTCAAACTAATCCCCATTCTTTTCAGGATTAGGCACAATAAACATAGTCTTCT
* * * * * ** *
834526 CTTTAGGATACATGATATTGGTGCTTTGGTATCACAAGAAAAGCTTTTTTACCCACCAATTTTAC
258 CATTAGGATACACGATACTGGTGCTTTGATTTTGCAAG-AAAG-TTTTTT-CCCACCAATTTTAG
* * ** *
834591 TAAGGTCTAAGTTCATGTCTCAAATGAGACAAACATTTATTCTAGTAATAATCTTCTTTCATTTT
320 TAAAGTCTAAGTTCAT-TCTCAAAAGAGACAAACATGGATTCTAGTAATGATCTTCTTTCATTTT
* ** * * * *
834656 ATGATTAGGTACCGTAAACACATTCTCCTCAATAGGATAATTGATATTGATGATTTTTTTTTGCA
384 ATGATTAGGCACTATAAACACATTCTCATCATTAGGATAAATGATATTGATGATTTTCTTTTGCA
* *
834721 TTGAAATCTTTTCTTTGCCCTATT
449 TAGAAATCTTTTCTTTGCCTTATT
*
834745 TTCCTTAAAATCAAAGTTCATCCCCTAAATAAGACAAGCATCGATTCTCATACAGTTTCCATTAT
1 TTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCATACAGTTTCCATT-T
* * * * * *
834810 GTTCAAGATTGGGAACCAAAAACACA-TTCCCTTCATTAGGAT-GGATGACATTGATGCTTTAAT
65 TTTTAAGAATGGGAACCAAAAACACATTTCCTTTCATTAGGATACG-TGACATTGATGCTTTAGT
* * ** * *
834873 GTTACAAGAAAAGCTTTTCTGTCCATCTTTTTTGATAGAATCAAAGTTTG-CTTCTTAAATAAGG
129 GTCACAAGAAAAGCTTTTCTGTCCAGCCATTTTCATAGAATCAAAGTTTGTC-TCTTAAATAAGA
* * *
834937 CAAACATGAATACTCAAACTAATCCCCATTCTTTGCA-GAGTTAGGCACCATAAATATAGTCTTC
193 CAAACATGAATACTCAAACTAATCCCCATTCTTTTCAGGA-TTAGGCACAATAAACATAGTCTTC
* * ** * *
835001 TCAATAGGATACACGATACTGGTGATTACATTTTGCAAGAAAGGTTTCTTTTCGACCAATTTTAG
257 TCATTAGGATACACGATACTGGTGCTTTGATTTTGCAAGAAA-GTTT-TTTCCCACCAATTTTAG
* * * ** * * *
835066 TAAAGTCTATGTTCGTATCTCAAAAGAGATAAAGGTGGAATCTAGTAATGATATTCCTTCATTTT
320 TAAAGTCTAAGTTCAT-TCTCAAAAGAGACAAACATGGATTCTAGTAATGATCTTCTTTCATTTT
* *
835131 ATGATTAGGCACTATAAACACATTCTCGTCATTAGGATAAATGATATTGATGGTTTTCTTTTGCA
384 ATGATTAGGCACTATAAACACATTCTCATCATTAGGATAAATGATATTGATGATTTTCTTTTGCA
* *
835196 TAGAAATTTTTTCTTT-ACTCTATT
449 TAGAAATCTTTTCTTTGCCT-TATT
* * * *
835220 TTCCTTAAAATCAAAGTTTATCCCTTAAATAAGACAAGCATCGATTCTCATAATAGTCTCCATTG
1 TTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCAT-ACAGTTTCCATTT
* * * * *
835285 TTTTCAGAATTGGAACCAAAAACACATTCCCTCT-ATTAGGATACATGACATTGATGCTTTAGTG
65 TTTTAAGAATGGGAACCAAAAACACATTTCCTTTCATTAGGATACGTGACATTGATGCTTTAGTG
* *
835349 TCACAAGAAAAACTTTTCTTTCCA
130 TCACAAGAAAAGCTTTTCTGTCCA
835373 TCGTTTTTGT
Statistics
Matches: 901, Mismatches: 166, Indels: 59
0.80 0.15 0.05
Matches are distributed among these distances:
461 9 0.01
462 73 0.08
463 3 0.00
465 1 0.00
466 1 0.00
469 1 0.00
470 61 0.07
471 56 0.06
472 30 0.03
473 1 0.00
474 79 0.09
475 509 0.56
476 77 0.09
ACGTcount: A:0.32, C:0.18, G:0.14, T:0.36
Consensus pattern (472 bp):
TTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCATACAGTTTCCATTTT
TTTAAGAATGGGAACCAAAAACACATTTCCTTTCATTAGGATACGTGACATTGATGCTTTAGTGT
CACAAGAAAAGCTTTTCTGTCCAGCCATTTTCATAGAATCAAAGTTTGTCTCTTAAATAAGACAA
ACATGAATACTCAAACTAATCCCCATTCTTTTCAGGATTAGGCACAATAAACATAGTCTTCTCAT
TAGGATACACGATACTGGTGCTTTGATTTTGCAAGAAAGTTTTTTCCCACCAATTTTAGTAAAGT
CTAAGTTCATTCTCAAAAGAGACAAACATGGATTCTAGTAATGATCTTCTTTCATTTTATGATTA
GGCACTATAAACACATTCTCATCATTAGGATAAATGATATTGATGATTTTCTTTTGCATAGAAAT
CTTTTCTTTGCCTTATT
Found at i:835791 original size:13 final size:13
Alignment explanation
Indices: 835773--835798 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
835763 TACGCAAAGT
835773 ATGTATCGATACA
1 ATGTATCGATACA
835786 ATGTATCGATACA
1 ATGTATCGATACA
835799 CCAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:838043 original size:22 final size:21
Alignment explanation
Indices: 838016--838067 Score: 61
Period size: 21 Copynumber: 2.4 Consensus size: 21
838006 TTGCAAGTTG
838016 AAATAAAAAATTTAGCTAATG-A
1 AAATAAAAAA-TTAGCTAA-GAA
**
838038 AAATAATGAATTAGCTAAGAA
1 AAATAAAAAATTAGCTAAGAA
838059 AAATAAAAA
1 AAATAAAAA
838068 CTTGCATGAT
Statistics
Matches: 25, Mismatches: 4, Indels: 3
0.78 0.12 0.09
Matches are distributed among these distances:
20 1 0.04
21 16 0.64
22 8 0.32
ACGTcount: A:0.63, C:0.04, G:0.10, T:0.23
Consensus pattern (21 bp):
AAATAAAAAATTAGCTAAGAA
Found at i:841987 original size:13 final size:13
Alignment explanation
Indices: 841966--842002 Score: 56
Period size: 13 Copynumber: 2.8 Consensus size: 13
841956 ATTTTTCTTG
*
841966 GTATCGATACATT
1 GTATCGATACACT
*
841979 GTATTGATACACT
1 GTATCGATACACT
841992 GTATCGATACA
1 GTATCGATACA
842003 GGGGGATTAT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
13 21 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.35
Consensus pattern (13 bp):
GTATCGATACACT
Found at i:843666 original size:22 final size:20
Alignment explanation
Indices: 843624--843666 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 20
843614 GTGTTTAATG
*
843624 TATTTGCTTGACTTTGTTTT
1 TATTTGCTTGACTTTGATTT
843644 TATTTGCATTGTACTTTGATTT
1 TATTTGC-TTG-ACTTTGATTT
843666 T
1 T
843667 TTAATCTATA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
20 7 0.35
21 3 0.15
22 10 0.50
ACGTcount: A:0.14, C:0.09, G:0.14, T:0.63
Consensus pattern (20 bp):
TATTTGCTTGACTTTGATTT
Found at i:843879 original size:25 final size:26
Alignment explanation
Indices: 843840--843891 Score: 97
Period size: 25 Copynumber: 2.0 Consensus size: 26
843830 TTAAGGGGGA
843840 GATTTTTTTTAATAAAAGGGGAGAAT
1 GATTTTTTTTAATAAAAGGGGAGAAT
843866 GATTTTTTTT-ATAAAAGGGGAGAAT
1 GATTTTTTTTAATAAAAGGGGAGAAT
843891 G
1 G
843892 CGTGAATTTG
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 16 0.62
26 10 0.38
ACGTcount: A:0.37, C:0.00, G:0.25, T:0.38
Consensus pattern (26 bp):
GATTTTTTTTAATAAAAGGGGAGAAT
Found at i:844528 original size:20 final size:22
Alignment explanation
Indices: 844505--844559 Score: 71
Period size: 21 Copynumber: 2.6 Consensus size: 22
844495 ACAATTCAAA
**
844505 GTATCGATACATGTT-GCA-AT
1 GTATCGATACATGTTAAAAGAT
844525 GTATCGATACAT-TTAAAAGAT
1 GTATCGATACATGTTAAAAGAT
844546 GTATCGATACATGT
1 GTATCGATACATGT
844560 CATTGGGATT
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
19 2 0.07
20 13 0.43
21 14 0.47
22 1 0.03
ACGTcount: A:0.35, C:0.13, G:0.18, T:0.35
Consensus pattern (22 bp):
GTATCGATACATGTTAAAAGAT
Found at i:844625 original size:13 final size:13
Alignment explanation
Indices: 844607--844632 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
844597 TACACAAAGT
844607 ATGTATCGATACA
1 ATGTATCGATACA
844620 ATGTATCGATACA
1 ATGTATCGATACA
844633 CCAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:844630 original size:32 final size:33
Alignment explanation
Indices: 844589--844652 Score: 96
Period size: 33 Copynumber: 2.0 Consensus size: 33
844579 TAGCCAAACT
*
844589 TGTATCGATACA-C-AAAGTATGTATCGATACAA
1 TGTATCGATACACCAAAAAT-TGTATCGATACAA
844621 TGTATCGATACACCAAAAATTGTATCGATACA
1 TGTATCGATACACCAAAAATTGTATCGATACA
844653 TTGGCTTGTA
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
32 12 0.41
33 13 0.45
34 4 0.14
ACGTcount: A:0.41, C:0.17, G:0.14, T:0.28
Consensus pattern (33 bp):
TGTATCGATACACCAAAAATTGTATCGATACAA
Found at i:845754 original size:158 final size:155
Alignment explanation
Indices: 845468--848229 Score: 606
Period size: 158 Copynumber: 17.6 Consensus size: 155
845458 ACTAATCCCT
* * * * * * *
845468 ATTC-TTTTCACGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGATATTGGTGCTT
1 ATTCATTTT-ACGATTAGGCACTATAAACACATTCTCCTCATTAGGATACATGATATTGATGATT
** * * * * * * ** **
845532 TGATTTTGCAAGAAAGGTTTTTTTCCTACCAATTTTTTTAAATTCTAAGTTCGTATCTCCAATAA
65 TTCTTTCGCAAGAAAAGCTTTTTTCC--CCTATTTTTTTAAAATCAAAGTT-GTCCCTTAAATAA
*
845597 GACAAACATGCATTCTAGTAATGATCTTC
127 GACAAACATGCATTCTAGTAATGATCTCC
* * *
845626 TTTCATTTTACGATTAGGTACTATAAACACATTCTCCTCAATAGGATA-ATTGATATTGATGATT
1 ATTCATTTTACGATTAGGCACTATAAACACATTCTCCTCATTAGGATACA-TGATATTGATGATT
* * * *
845690 TTCTTTTGCATGAAAATCTTTTCTTGCCCTATTTTCTTTAAAATCAAAGTTGATCCCTTAAATAA
65 TTCTTTCGCAAGAAAAGCTTTT-TTCCCCTATTTT-TTTAAAATCAAAGTTG-TCCCTTAAATAA
** * * *
845755 GATGAGCAT-CGAATCTTGTAACT-ATCTCC
127 GACAAACATGC-ATTCTAGTAA-TGATCTCC
* * * * *
845784 ATTC-TTTTCAAGATTGAGG-ACTAGAAACACATTC-CCTTCATTAGGATGCATGACATTGATGC
1 ATTCATTTT-ACGATT-AGGCACTATAAACACATTCTCC-TCATTAGGATACATGATATTGATGA
** * * * * * * ***
845846 TTTGGTGTCACAAGAAAAGCTTTTTTTTCCATAGTTTTTGATAGAATTGTAGTT-TGCCTCTTAA
63 TTTTCTTTCGCAAGAAAAGC-TTTTTTCCCCTA-TTTTT-TTAAAATCAAAGTTGT-CC-CTTAA
* ** * *
845910 ATAAGACAAACATGAAAACTCA--AACTAATCCCC
123 ATAAGACAAACATGCATTCT-AGTAA-TGATCTCC
* * * * * * * * * * *
845943 ATTC-TTTTCAGGGTTAGGCACCATACACATAGTCTTCTCATTGGGTTACATGATATTGGTGCTT
1 ATTCATTTT-ACGATTAGGCACTATAAACACATTCTCCTCATTAGGATACATGATATTGATGATT
** * * ** * * * * * *
846007 TGATTTCGCAAGAAAGGCTTTTTTCCTACCAATTTTAGTAAAGTCTAAGTCCGTACCTCAAAAAA
65 TTCTTTCGCAAGAAAAGCTTTTTTCC--CCTATTTTTTTAAAATCAAAGT-TGTCCCTTAAATAA
* * *
846072 GATAAACGTGGATTCTAGTAATGATCTTCC
127 GACAAACATGCATTCTAGTAATGATC-TCC
* * * * *
846102 -TTCATTTTATGACTAGGCACTATAAACACATTCTCGTCATTAGGATAAATGATATTGATGGTTT
1 ATTCATTTTACGATTAGGCACTATAAACACATTCTCCTCATTAGGATACATGATATTGATGATTT
** * * * * *
846166 TCTTTTACATAG-AAATCTTTTCTTTACTCTTTTTTTCTTAAAATCAAAGTTCATCCCTTAAATA
66 TCTTTCGCA-AGAAAAGC-TTT-TTTCCCCTATTTTT-TTAAAATCAAAGTT-GTCCCTTAAATA
** *
846230 AGACAAGGAT-CGATTCTCA-TAA-CAGTCTCC
126 AGACAAACATGC-ATTCT-AGTAATGA-TCTCC
* ** * * *
846260 ATT-GTTTT-CAGAATT-GAAACCAAAAACACATTC-CCTCCATTAGGATACATGACATTGATG-
1 ATTCATTTTAC-G-ATTAGGCACTATAAACACATTCTCCT-CATTAGGATACATGATATTGATGA
* * * * * * * * *
846320 TTTTAGTGTCACAAAAAAAGCTTTTCTTTCCATCATTTTTGATT-GAATTAAAGTTCGTCTCTTA
63 TTTT-CTTTCGCAAGAAAAGCTTTT-TTCCCCT-ATTTTT--TTAAAATCAAAGTT-GTCCCTTA
* ** * * * * *
846384 AATAAGACAAATATTAATACTCGTACTAATCCCC
122 AATAAGACAAACATGCATTCTAGTAATGATCTCC
* *** * * * *
846418 ATTC-TTTTCACGATTAGGCACCATAAACATGGTCTTCTCATTAGGATACACGATATTGGTGCTT
1 ATTCATTTT-ACGATTAGGCACTATAAACACATTCTCCTCATTAGGATACATGATATTGATGATT
** * * * * * ** *
846482 TGATTTCGCAAGAAAGGCTTTTTTCCCACCAATTTTTTTAAAGTCTAAGTTCATATCTCAAATAA
65 TTCTTTCGCAAGAAAAGCTTTTTT-CC-CCTATTTTTTTAAAATCAAAGTT-GTCCCTTAAATAA
* *
846547 GACAAACATGTATTCTAGTAATGATCTTC
127 GACAAACATGCATTCTAGTAATGATCTCC
* * * * * *
846576 TTTTATTTTATGATTAGGTACTATAAACACATTTTCCTCAATAGGATA-ATTGATATTGATGATT
1 ATTCATTTTACGATTAGGCACTATAAACACATTCTCCTCATTAGGATACA-TGATATTGATGATT
* * * * * * * * *
846640 TTTTTTTGCATGAAAATCTTTTCATGCCTTATTTTCCTTAAAATCAAAGTTGATCCCCTAAATAA
65 TTCTTTCGCAAGAAAAGCTTTT-TTCCCCTATTTT-TTTAAAATCAAAGTTG-TCCCTTAAATAA
** * * *
846705 GATGAGCAT-CGAATCTCGTAACT-ATCTCC
127 GACAAACATGC-ATTCTAGTAA-TGATCTCC
* * * * *
846734 ATTCTTTTTAAC-ATTAAGAACCAAAAACACATTC-CCTTCATTAGGATACATGATATTGATGCA
1 ATTCATTTT-ACGATTAGGCACTATAAACACATTCTCC-TCATTAGGATACATGATATTGATG-A
* * ** * *
846797 --TTCGTATCGTAAGAAAAGCTTTTTTTTCC-ATTGTTTTTGATAGAATTAAAGTCTGTCTCTTA
63 TTTTC-TTTCGCAAGAAAAGCTTTTTTCCCCTATT-TTTTT-A-A-AATCAAAGT-TGTCCCTTA
* ** * *
846859 AATAAGACAAACATGAAAACTCA-TACTAATCTCTC
122 AATAAGACAAACATGCATTCT-AGTAATGATCTC-C
* * * * * * * * * * *
846894 -TTCTTTTTAGGGTTAGGCA-TGATACACATAGTCTTCGCATTAGGATACATGACATTGGTGCTT
1 ATTCATTTTACGATTAGGCACT-ATAAACACATTCTCCTCATTAGGATACATGATATTGATGATT
** * * * * ** * * * *
846957 TGGTTTTGCAA-TAAAGGTATTTTTCCCACCAATTTTAGTAAAGT-ATAAGTTTGTGCCTCAAAG
65 TTCTTTCGCAAGAAAAGCT-TTTTT-CC-CCTATTTTTTTAAAATCA-AAG-TTGTCCCTTAAAT
* * * * * *
847020 GAGATAGAC-TGGATTCTAGTAATGATATTC
125 AAGACAAACATGCATTCTAGTAATGATCTCC
* * * * * * *
847050 TTTCATTTTATGATTAGGTACTGTAAACACATTCTTCTCAATAGGATA-ATTGATATTGACGATT
1 ATTCATTTTACGATTAGGCACTATAAACACATTCTCCTCATTAGGATACA-TGATATTGATGATT
* * * * * *
847114 TTCTTTTGCATGAAAATCTATTTTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATA
65 TTCTTTCGCAAGAAAAGC--TTTTTTCCCCTATTTT-TTTAAAATCAAAGTT-GTCCCTTAAATA
*
847179 AGACAAGCAT-CGATTCTCA-TAAT-AGTC-CC
126 AGACAAACATGC-ATTCT-AGTAATGA-TCTCC
* * * * * *
847208 TATTC-TTTTCAAGAATAGGTC-C-AAAAACACATTC-CCTTCATTAAGAT-GATGCT-TT--TG
1 -ATTCATTTT-ACGATTAGG-CACTATAAACACATTCTCC-TCATTAGGATACATGATATTGATG
* * * * ** * *
847265 A--GTC-AT---ACGAAAAGCTTTGCTTTCCATCGT-TTTTCATAGAATCAAAGTTTGTCTCTTA
62 ATTTTCTTTCGCAAGAAAAGCTTT--TTTCC--CCTATTTTTTTAAAATCAAAG-TTGTCCCTTA
* * * * * *
847323 AATAAAACAAACATGAATACCCA-TACT-AGTCCCC
122 AATAAGACAAACATGCAT-TCTAGTAATGA-TCTCC
* ** * * * ** * * *
847357 ATTC-TTTTCAGGATTAGGCAAAATAAACATAGTCTTCTCATTAGGATACACAATACTGGTGCTT
1 ATTCATTTT-ACGATTAGGCACTATAAACACATTCTCCTCATTAGGATACATGATATTGATGATT
** * * * * * * * *
847421 TGATTTTGCAAG-AAAG--GTTTCCCGCCAATTTTTGTAAAGTCTAAGTTCGTCCCTCAAA-AGA
65 TTCTTTCGCAAGAAAAGCTTTTTTCC-CCTATTTTTTTAAAATCAAAGTT-GTCCCTTAAATA-A
* * *
847482 GACAAACATGGATTCTAGTAATGACCTTC
127 GACAAACATGCATTCTAGTAATGATCTCC
* * * * * * * *
847511 -TTCCATTTTATGATTAGGCACTATAAAAACATTATCATCAATGGGATAAACGATATTGATGATT
1 ATT-CATTTTACGATTAGGCACTATAAACACATTCTCCTCATTAGGATACATGATATTGATGATT
* * * * * *
847575 TTCTTTTGCATGGAAATCTTTTCCTTGCCCTATTTTTCTTAAAAT-AGAAGTTCATCCCTTAAAT
65 TTCTTTCGCAAGAAAAGCTTTT--TTCCCCTATTTTT-TTAAAATCA-AAGTT-GTCCCTTAAAT
** *
847639 AAGACAAACAT-CGATTCTCA-TAACAATTTCC
125 AAGACAAACATGC-ATTCT-AGTAATGATCTCC
* * * * * *
847670 ATT-TTTTTCAGGACTGGGAACCTA-AAACA-ATT-TCCTTTCATTAGGATACATGAAATTGATG
1 ATTCATTTT-ACGATTAGGCA-CTATAAACACATTCTCC--TCATTAGGATACATGATATTGATG
* ** * ** * * *
847731 CTTTGGTGTCGCAAGAAAAGCTTTTTTTCCACC-ATTTTCATAGAATTAAAGTT-TCTCTCTTAT
62 ATTTTCTTTCGCAAGAAAAGC-TTTTTTCC-CCTATTTTTTTAAAATCAAAGTTGTC-C-CTTAA
* * * * *
847794 ATAAGACAAACATGAATACTCA-CACTAATC-CC
123 ATAAGACAAACATGCATTCT-AGTAATGATCTCC
** * * * * * * * * *
847826 ATTTTTTTTAGGATTAGGCACTATGAAGATATTTTTCC-CTTTTGGATACATGATATTGGTGCTT
1 ATTCATTTTACGATTAGGCACTATAAACACA-TTCTCCTCATTAGGATACATGATATTGATGATT
** * * * * ** * * ** * *
847890 TAGTATCACAAGAAAAGCGTTTTTACCCACCAATTTTACTAAAGTCTAAGTTCGTGGCTCAAATG
65 TTCTTTCGCAAGAAAAGC-TTTTT-TCC-CCTATTTTTTTAAAATCAAAGTT-GTCCCTTAAATA
* * *
847955 AGACAAACATTG-ATTCTAGTAATAAACTTC
126 AGACAAACA-TGCATTCTAGTAATGATCTCC
* * ** *
847985 TTTCATTTTATGATTAGGTC-CCGTAAACACATTCTCCTCAATAGGATA-ATTGATATTGATGAT
1 ATTCATTTTACGATTAGG-CACTATAAACACATTCTCCTCATTAGGATACA-TGATATTGATGAT
* * * * * * * *
848048 TTGT-TTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCCTAAA
64 TT-TCTTTCGCAAGAAAAGC-TTT-TTTCCCCTATTTT-TTTAAAATCAAAGTT-GTCCCTTAAA
*
848112 TAAGACAAGCAT-CGATTCTCA-TACCA-G-TCTCC
124 TAAGACAAACATGC-ATTCT-AGTA--ATGATCTCC
* * * * * * * *
848144 ATTC-TGTTTAAGATT-GGGAGCCAAAAACACATTCGCTTCATTAGGATGCATGATATTGATGCT
1 ATTCAT-TTTACGATTAGGCA-CTATAAACACATTCTCCTCATTAGGATACATGATATTGATGAT
**
848207 TTAATGTT-GCAAGAAAAGCTTTT
64 TTTCT-TTCGCAAGAAAAGCTTTT
848230 CTTTCCATCG
Statistics
Matches: 1853, Mismatches: 564, Indels: 375
0.66 0.20 0.13
Matches are distributed among these distances:
146 3 0.00
147 1 0.00
148 66 0.04
149 27 0.01
150 5 0.00
151 2 0.00
152 2 0.00
153 10 0.01
154 92 0.05
155 13 0.01
156 72 0.04
157 182 0.10
158 734 0.40
159 592 0.32
160 43 0.02
161 6 0.00
162 3 0.00
ACGTcount: A:0.31, C:0.18, G:0.13, T:0.37
Consensus pattern (155 bp):
ATTCATTTTACGATTAGGCACTATAAACACATTCTCCTCATTAGGATACATGATATTGATGATTT
TCTTTCGCAAGAAAAGCTTTTTTCCCCTATTTTTTTAAAATCAAAGTTGTCCCTTAAATAAGACA
AACATGCATTCTAGTAATGATCTCC
Found at i:846293 original size:475 final size:475
Alignment explanation
Indices: 845403--848352 Score: 3442
Period size: 475 Copynumber: 6.2 Consensus size: 475
845393 TAAAGCTTAC
* * * * *
845403 AGTTTTTGATTGAATTAAAGTTTGTCTCATAAATAAGACAGATATGAATACTCATACTAATCCCT
1 AGTTTTTGATAGAATTAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCC
*
845468 ATTCTTTTCACGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGATATTGGTGCTTT
66 ATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGATATTGGTGCTTT
* * * ** * * *
845533 GATTTTGCAAGAAAGGTTTTTTTCCTACCAATTTTTTTAAATTCTAAGTTCGTATCTCCAATAAG
131 GATTTCGCAAGAAAGGCTTTTTTCCCACCAATTTTAGTAAAGTCTAAGTTCGTACCTCAAATAAG
* * *
845598 ACAAACATGCATTCTAGTAATGATCTTCTTTCATTTTACGATTAGGTACTATAAACACATTCTCC
196 ACAAACATGGATTCTAGTAATGATCTTCTTTCATTTTATGATTAGGCACTATAAACACATTCTCC
*
845663 TCAATAGGATAATTGATATTGATGATTTTCTTTTGCATGAAAATCTTTTC-TTGCCCTATTTTCT
261 TCAATAGGATAATTGATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCC
* ** * **
845727 TTAAAATCAAAGTTGATCCCTTAAATAAGATGAGCATCGAATCTTGTAACTA-TCTCCATTCTTT
326 TTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCATAAC-AGTCTCCATTCTTT
* * * * *
845791 TCA-AGATTGAGGACTAGAAACACATTCCCTTCATTAGGATGCATGACATTGATGCTTTGGTGTC
390 TCAGA-ATTGA-AACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTAGTGTC
*
845855 ACAAGAAAAGCTTTTTTTTCCAT
453 ACAAGAAAAGCTTTTCTTTCCAT
** * * *
845878 AGTTTTTGATAGAATTGTAGTTTGCCTCTTAAATAAGACAAACATGAAAACTCAAACTAATCCCC
1 AGTTTTTGATAGAATTAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCC
* * * * *
845943 ATTCTTTTCAGGGTTAGGCACCATACACATAGTCTTCTCATTGGGTTACATGATATTGGTGCTTT
66 ATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGATATTGGTGCTTT
* * *
846008 GATTTCGCAAGAAAGGCTTTTTTCCTACCAATTTTAGTAAAGTCTAAGTCCGTACCTCAAAAAAG
131 GATTTCGCAAGAAAGGCTTTTTTCCCACCAATTTTAGTAAAGTCTAAGTTCGTACCTCAAATAAG
* * * * *
846073 ATAAACGTGGATTCTAGTAATGATCTTCCTTCATTTTATGACTAGGCACTATAAACACATTCTCG
196 ACAAACATGGATTCTAGTAATGATCTTCTTTCATTTTATGATTAGGCACTATAAACACATTCTCC
* * * * * * * *
846138 TCATTAGGATAAATGATATTGATGGTTTTCTTTTACAT-AGAAATCTTTTCTTTACTCTTTTTTT
261 TCAATAGGATAATTGATATTGATGATTTTCTTTTGCATGA-AAATCTTTTCTTTGCCCTATTTTC
* *
846202 CTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGGATCGATTCTCATAACAGTCTCCATTGTTT
325 CTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCATAACAGTCTCCATTCTTT
* *
846267 TCAGAATTGAAACCAAAAACACATTCCCTCCATTAGGATACATGACATTGATGTTTTAGTGTCAC
390 TCAGAATTGAAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTAGTGTCAC
*
846332 AAAAAAAGCTTTTCTTTCCAT
455 AAGAAAAGCTTTTCTTTCCAT
* * * * *
846353 CA-TTTTTGATTGAATTAAAGTTCGTCTCTTAAATAAGACAAATATTAATACTCGTACTAATCCC
1 -AGTTTTTGATAGAATTAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCC
* *
846417 CATTCTTTTCACGATTAGGCACCATAAACATGGTCTTCTCATTAGGATACACGATATTGGTGCTT
65 CATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGATATTGGTGCTT
** * *
846482 TGATTTCGCAAGAAAGGCTTTTTTCCCACCAATTTTTTTAAAGTCTAAGTTCATATCTCAAATAA
130 TGATTTCGCAAGAAAGGCTTTTTTCCCACCAATTTTAGTAAAGTCTAAGTTCGTACCTCAAATAA
* * * *
846547 GACAAACATGTATTCTAGTAATGATCTTCTTTTATTTTATGATTAGGTACTATAAACACATTTTC
195 GACAAACATGGATTCTAGTAATGATCTTCTTTCATTTTATGATTAGGCACTATAAACACATTCTC
* * *
846612 CTCAATAGGATAATTGATATTGATGATTTTTTTTTGCATGAAAATCTTTTC-ATGCCTTATTTTC
260 CTCAATAGGATAATTGATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTC
* * ** * *
846676 CTTAAAATCAAAGTTGATCCCCTAAATAAGATGAGCATCGAATCTCGTAACTA-TCTCCATTCTT
325 CTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCATAAC-AGTCTCCATTCTT
* * * * * *
846740 TTTA-ACATTAAGAACCAAAAACACATTCCCTTCATTAGGATACATGATATTGATGCATTCGTAT
389 TTCAGA-ATTGA-AACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTAGTGT
** *
846804 CGTAAGAAAAGCTTTTTTTTCCAT
452 CACAAGAAAAGCTTTTCTTTCCAT
* * * *
846828 TGTTTTTGATAGAATTAAAGTCTGTCTCTTAAATAAGACAAACATGAAAACTCATACTAATCTCT
1 AGTTTTTGATAGAATTAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATC-CC
* * ** * * * *
846893 C-TTCTTTTTAGGGTTAGGCATGATACACATAGTCTTCGCATTAGGATACATGACATTGGTGCTT
65 CATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGATATTGGTGCTT
* * * * * * **
846957 TGGTTTTGCAATAAAGG-TATTTTTCCCACCAATTTTAGTAAAGTATAAGTTTGTGCCTCAAAGG
130 TGATTTCGCAAGAAAGGCT-TTTTTCCCACCAATTTTAGTAAAGTCTAAGTTCGTACCTCAAATA
* * * * *
847021 AGATAGAC-TGGATTCTAGTAATGATATTCTTTCATTTTATGATTAGGTACTGTAAACACATTCT
194 AGACAAACATGGATTCTAGTAATGATCTTCTTTCATTTTATGATTAGGCACTATAAACACATTCT
* *
847085 TCTCAATAGGATAATTGATATTGACGATTTTCTTTTGCATGAAAATCTATTT-TTTGCCCTATTT
259 CCTCAATAGGATAATTGATATTGATGATTTTCTTTTGCATGAAAATCT-TTTCTTTGCCCTATTT
*
847149 TCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCATAATAGTC-CCTATTC
323 TCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCATAACAGTCTCC-ATTC
* ** * *
847213 TTTTCAAGAATAG-GTCCAAAAACACATTCCCTTCA-T----TA-A-G--A-TGATGCTTTTGAG
387 TTTTC-AGAATTGAAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTAGTG
* * *
847267 TCATACGAAAAGCTTTGCTTTCCAT
451 TCACAAGAAAAGCTTTTCTTTCCAT
* * * * * *
847292 CGTTTTTCATAGAATCAAAGTTTGTCTCTTAAATAAAACAAACATGAATACCCATACTAGTCCCC
1 AGTTTTTGATAGAATTAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCC
** * *
847357 ATTCTTTTCAGGATTAGGCAAAATAAACATAGTCTTCTCATTAGGATACACAATACTGGTGCTTT
66 ATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGATATTGGTGCTTT
* * * *
847422 GATTTTGCAAGAAAGG----TTTCCCGCCAATTTTTGTAAAGTCTAAGTTCGTCCCTCAAA-AGA
131 GATTTCGCAAGAAAGGCTTTTTTCCCACCAATTTTAGTAAAGTCTAAGTTCGTACCTCAAATA-A
* * * *
847482 GACAAACATGGATTCTAGTAATGACCTTCTTCCATTTTATGATTAGGCACTATAAAAACATTATC
195 GACAAACATGGATTCTAGTAATGATCTTCTTTCATTTTATGATTAGGCACTATAAACACATTCTC
* * ** * * *
847547 ATCAATGGGATAAACGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCCTTGCCCTATTTTT
260 CTCAATAGGATAATTGATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTC
* * * *
847612 CTTAAAAT-AGAAGTTCATCCCTTAAATAAGACAAACATCGATTCTCATAACAATTTCCATTTTT
325 CTTAAAATCA-AAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCATAACAGTCTCCATTCTT
* * * * * * *
847676 TTCAGGACTGGGAACCTAAAACA-ATTTCCTTTCATTAGGATACATGAAATTGATGCTTTGGTGT
389 TTCA-GAATTGAAACCAAAAACACA-TTCCCTTCATTAGGATACATGACATTGATGCTTTAGTGT
* *
847740 CGCAAGAAAAGCTTTT-TTTCCACC
452 CACAAGAAAAGCTTTTCTTTCCA-T
* * * *
847764 A--TTTTCATAGAATTAAAGTTTCTCTCTTATATAAGACAAACATGAATACTCACACTAAT-CCC
1 AGTTTTTGATAGAATTAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCC
* * * * * * * * * * *
847826 ATTTTTTTTAGGATTAGGCACTATGAAGATATTTTTCCCTTTTGGATACATGATATTGGTGCTTT
66 ATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGATATTGGTGCTTT
* * * * * ** *
847891 -AGTATCACAAGAAAAGCGTTTTTACCCACCAATTTTACTAAAGTCTAAGTTCGTGGCTCAAATG
131 GA-TTTCGCAAGAAAGGC-TTTTTTCCCACCAATTTTAGTAAAGTCTAAGTTCGTACCTCAAATA
* * * **
847955 AGACAAACATTGATTCTAGTAATAAACTTCTTTCATTTTATGATTAGGTC-CCGTAAACACATTC
194 AGACAAACATGGATTCTAGTAATGATCTTCTTTCATTTTATGATTAGG-CACTATAAACACATTC
*
848019 TCCTCAATAGGATAATTGATATTGATGATTTGT-TTTTGCATGGAAATCTTTTCTTTGCCCTATT
258 TCCTCAATAGGATAATTGATATTGATGATTT-TCTTTTGCATGAAAATCTTTTCTTTGCCCTATT
* *
848083 TTCCTTAAAATCAAAGTTCATCCCCTAAATAAGACAAGCATCGATTCTCATACCAGTCTCCATTC
322 TTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCATAACAGTCTCCATTC
* * * * * * *
848148 TGTTTAAG-ATTGGGAGCCAAAAACACATTCGCTTCATTAGGATGCATGATATTGATGCTTTAAT
387 T-TTTCAGAATT-GAAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTAGT
**
848212 GTTGCAAGAAAAGCTTTTCTTTCCAT
450 GTCACAAGAAAAGCTTTTCTTTCCAT
* * ** * *
848238 CGTTTTTGATAGAATCAAAGTTTCCCTCTTATATAAGGCAAACATGAATACTCATACTAATCCCC
1 AGTTTTTGATAGAATTAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCC
* * *
848303 ATTCTTTTTA-GAGTTAGGCACCATAAACATAGCCTTCTCAATAGGATACA
66 ATTCTTTTCAGGA-TTAGGCACCATAAACATAGTCTTCTCATTAGGATACA
848353 TGAAGCTGGT
Statistics
Matches: 2087, Mismatches: 332, Indels: 110
0.83 0.13 0.04
Matches are distributed among these distances:
460 47 0.02
461 164 0.08
462 18 0.01
463 3 0.00
464 152 0.07
465 1 0.00
467 3 0.00
468 3 0.00
469 67 0.03
470 51 0.02
471 7 0.00
472 24 0.01
473 3 0.00
474 452 0.22
475 918 0.44
476 133 0.06
477 41 0.02
ACGTcount: A:0.32, C:0.18, G:0.13, T:0.37
Consensus pattern (475 bp):
AGTTTTTGATAGAATTAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCC
ATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGATATTGGTGCTTT
GATTTCGCAAGAAAGGCTTTTTTCCCACCAATTTTAGTAAAGTCTAAGTTCGTACCTCAAATAAG
ACAAACATGGATTCTAGTAATGATCTTCTTTCATTTTATGATTAGGCACTATAAACACATTCTCC
TCAATAGGATAATTGATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCC
TTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCATAACAGTCTCCATTCTTTT
CAGAATTGAAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTAGTGTCACA
AGAAAAGCTTTTCTTTCCAT
Found at i:849459 original size:475 final size:476
Alignment explanation
Indices: 848430--853953 Score: 6061
Period size: 475 Copynumber: 11.6 Consensus size: 476
848420 TAATGATCTG
* * *
848430 TGAGTAGGCACTATAAAGACATTCTCTTCGTTAGGATAAATGATATTGATGATTTTCTTTTGCAT
1 TGAGTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCAT
* * * ** *
848495 GAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTCAAAGAACTCAAGCATT
66 GGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATC
* * * ** * * *
848560 GATTCTCGTAACAGTCTCAATTTTTTTCAAGAATAGGAACCAAAAACATATTCCCTTCATTAGGA
131 GATTCTCGTAATAGTCTCCATTCTTTTCAAGGTTGGGAACCAAAAACACATTCCCTTTATTAGGA
* * *** *
848625 TACATGACATTGATCCTTTAGTGTCTCAAGAAAAGCTTTTCTTTCCATCACTTTTGATAGAATCA
196 TACATGACATTGATGCTTTAGTGTCGCAAGAAAAGCTTTTCTTTCCATTGTTTTTGATAGAATTA
* * * * * *
848690 AAGTTTGTCTCTTAAATAAGAC--ACATGAATAATCGTGCGAATCCCCATTATTTTCATGATTAG
261 AAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTCAGGATTAG
* * * * * * * * * *
848753 GCACTATAAGCATAGCCTTTTCATTAGGATGCATGACACTAGTGCTCTGATTTCGAAAGAAAGGC
326 GCACCATAAACATAGTCTTCTCATTAGGATACACGATACTGGTGCTTTGATTTCGCAAGAAAGGC
* * *
848818 TTTTTTCCCACCAATTTTAGTAAAGTCTAAGTTTGTGCCTCAAAAGAGACAAACAAGGATTCTAG
391 TTTTTTCCTACCAATTTTAGTAAAGTCTAAGTTCGTGCCTCAAAAGAGACAAACATGGATTCTAG
* *
848883 TAATGATCTTTTTTTCATTTTT
456 TAATGATC-TTCTTTCATTTTA
* ** * * * *
848905 TGATTAGATACTATAAACATATTCTCCTCAGTAGGATAATTGACATTGATGATTTTCTTTTGCAT
1 TGAGTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCAT
* * * * * * *
848970 GGTAATCTTTTTTTTGCCCTATTTTTCTTAAAATCATAGTTTAACCCTTAAATAAGACAAGCATT
66 GGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATC
* * * *
849035 AATTCTCGTTATAGTCTCCATTATTTTCAATGTTGGGAACCAAAAACACATTCCCTTTATTAGGA
131 GATTCTCGTAATAGTCTCCATTCTTTTCAAGGTTGGGAACCAAAAACACATTCCCTTTATTAGGA
* ** * * * *
849100 TACATGACATTAATGCTTCGGTGTTGGAAGAAAAGC-TTTCTTTTCCACTGTTTTTCATAGAATT
196 TACATGACATTGATGCTTTAGTGTCGCAAGAAAAGCTTTTC-TTTCCATTGTTTTTGATAGAATT
* * * * * *
849164 AAAATTTGTTTCTAAAATAAGGCAAACAAGAATACTCATACTAATCCCCACTCTTTTCAGGATTA
260 AAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTCAGGATTA
* * * * * *
849229 GGCACCATAAACATAGTCTTCTGATTAGGATACACAATATTGGAGCTTT-AGTTTCACAACAAAG
325 GGCACCATAAACATAGTCTTCTCATTAGGATACACGATACTGGTGCTTTGA-TTTCGCAAGAAAG
* * * *
849293 GCTTTTTTCCTACTAATTTTACTAAAGTCTAAGTTCGTGCCTCAAAAGAGGCAAATATGGATTCT
389 GCTTTTTTCCTACCAATTTTAGTAAAGTCTAAGTTCGTGCCTCAAAAGAGACAAACATGGATTCT
* * *
849358 ACTAAAGATCTGT-TTTGATTTTA
454 AGTAATGATCT-TCTTTCATTTTA
* * * ** * * *
849381 TGAGTAGGCGCTATAAACACGTTCTCTTTTTTAGGAGAAATGATATAGATGATTTTCCTTT-CAA
1 TGAGTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGC-A
* * * *
849445 TGGAAATATTTT-TTTGCCCTATTTTCCTTAAAATCAAAATTCATCCCCTAAAAAAGACAAGCAT
65 TGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCAT
* * ** * *
849509 CGATTCCCGTAACAGTCTTTATTCTTTTCAAGGTTGGGAACCAAAAACACATTCCCTTAACTAGG
130 CGATTCTCGTAATAGTCTCCATTCTTTTCAAGGTTGGGAACCAAAAACACATTCCCTTTATTAGG
* * * *
849574 ATACATGACATTGATGCTTTTTGTTTCGCAAGAAAAGCTTTTCTTTCCATTGCTTGTGATAGAAT
195 ATACATGACATTGATGC-TTTAGTGTCGCAAGAAAAGCTTTTCTTTCCATTGTTTTTGATAGAAT
* ** * * * *
849639 TAAAATTTGTCTCTTAAATAAGACAAACATGAATAGGCAT--TCATCCCTATACTTTTCAGGATG
259 TAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTCAGGATT
* * * * * * **
849702 AGGCACCATAAAAATAGTCTTCCCATTAGAATACATGATACTAGTGGTTTGATTTTACAAGAAAG
324 AGGCACCATAAACATAGTCTTCTCATTAGGATACACGATACTGGTGCTTTGATTTCGCAAGAAAG
* * * **
849767 GCTTTTTTCCTGCCAATTTTAGTAAAGACTATGTTCGTATCTCAAAAGAGACAAACATGGATTCT
389 GCTTTTTTCCTACCAATTTTAGTAAAGTCTAAGTTCGTGCCTCAAAAGAGACAAACATGGATTCT
849832 AGTAATGATCTTCTTTCATTTTA
454 AGTAATGATCTTCTTTCATTTTA
* * * **
849855 TGATTAGGCACTATAAACATATGCTAATCATTAGGATAAATGATATTGATGATTTTCTTTTGCAT
1 TGAGTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCAT
* * * * * * * * * *
849920 GGAAATCCTTTCTTTGCCTTGTTTTCCTTCAAATAAAAGTTCATCACTTAGATAAGATAAACATA
66 GGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATC
* * * * * * *
849985 AATTCTCGTAATAGTCTCCATTCTTTT-TAGGATTGGGAATCTAAAACAAATTCCATTCATTAGG
131 GATTCTCGTAATAGTCTCCATTCTTTTCAAGG-TTGGGAACCAAAAACACATTCCCTTTATTAGG
* * * * * *** *
850049 ATACATGACACT-ATGCTTTGGTATCGCATGAAAAGCTTTTTTTTCCACCATTTTTCATAGAATT
195 ATACATGACATTGATGCTTTAGTGTCGCAAGAAAAGCTTTTCTTTCCATTGTTTTTGATAGAATT
* * * *
850113 AAAGTTTGTCTCTTAAAAAAGACAAACATGAATACTCAGACTAATCCCCATTTTTTTCAAGATTA
260 AAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTCAGGATTA
** * * * * * ***
850178 GGCACTTTAAACATAGCCTTCTCATTAGGATACATGATATTGGTGCGTTGGTTTCGTGCGAAAGG
325 GGCACCATAAACATAGTCTTCTCATTAGGATACACGATACTGGTGCTTTGATTTCGCAAGAAAGG
* * * *
850243 TTTTTTTTCCCACCAATTTTAGTAAAGTCTACA-TTCGTGCCCCAAAAGAGACAAACATCGATTC
390 -CTTTTTTCCTACCAATTTTAGTAAAGTCTA-AGTTCGTGCCTCAAAAGAGACAAACATGGATTC
* * *
850307 AACTAATGATCTTTTTTCATTTTA
453 TAGTAATGATCTTCTTTCATTTTA
* * * *
850331 CGATTAGGTACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTACAT
1 TGAGTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCAT
* * * ** * *
850396 GAAAATATTTTCTTTGCCCTATTTTCCCTAAAAAAAAAGTTCATCCCTTAAATGAGACAAACATC
66 GGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATC
* * * * * * *
850461 GATTCTCGTAA-AGCCTTCATTCTTTT-TAGGATTGGGAACCTAAAACATAATCCCTTCATTAGG
131 GATTCTCGTAATAGTCTCCATTCTTTTCAAGG-TTGGGAACCAAAAACACATTCCCTTTATTAGG
* * * * * * *
850524 ATATATGACATTGAGGCTTTGGTGTCGCAAGAAAAG-TTTT-TTTCTATCGTTTTTGACATAATT
195 ATACATGACATTGATGCTTTAGTGTCGCAAGAAAAGCTTTTCTTTCCATTGTTTTTGATAGAATT
* **** *
850587 AAAGTTTGTCTCTTAAATAAGATAAACATGAATACTCATACTAAT--CC--TCAAAACATGA--A
260 AAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTCAGGATTA
* * * * **
850646 --TACCATAAACATAGTCATT-TCATTAGTAGGATACACGATATTGGAGCTTTGGTTTCATAAGA
325 GGCACCATAAACATAGTC-TTCTCA-T--TAGGATACACGATACTGGTGCTTTGATTTCGCAAGA
* * * * * * *
850708 AAGGCTTTTTTCCCATCAATTTTATTAAAGTTTAAGTTCGAGCCTCAAAAGAGAAAAAC-TGGTT
386 AAGGCTTTTTTCCTACCAATTTTAGTAAAGTCTAAGTTCGTGCCTCAAAAGAGACAAACATGGAT
*
850772 TCTAGTAATGATCTTCTCTCATTTTA
451 TCTAGTAATGATCTTCTTTCATTTTA
* * ** * * *
850798 TGTGTAGGGACTATAAACACATTCTCCTTGTTAGGGTAAATGATATTGACGATTTTCTTTTGTAT
1 TGAGTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCAT
* * * *
850863 GAAAATCTTTTCTTTGTCCTATTTTCCTTAAAATCAAAGTTTATCCCTTAAATAAGACAAGTATC
66 GGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATC
* * * * **
850928 GACTCTCGTAACAGTCTCCATTCTTTTCATGGTTGGGAACCAAAAGCACATTCCCTTTATTAATA
131 GATTCTCGTAATAGTCTCCATTCTTTTCAAGGTTGGGAACCAAAAACACATTCCCTTTATTAGGA
* * * * * *
850993 TACATGACATTAAAGCTTTTGTGTCGCAAGAAAAACTTTTCTTTCCATTGTTTTTGATAAAATCA
196 TACATGACATTGATGCTTTAGTGTCGCAAGAAAAGCTTTTCTTTCCATTGTTTTTGATAGAATTA
* * * *
851058 AAGTTTGTCTCTTAAATAAGACAAACATGAATACTCTTGCTAATCCCAATTCTTTTAAGGATTAG
261 AAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTCAGGATTAG
* * * * * *
851123 GAACCATAAACTTAGTCATCTCGTCAGGATACACGATACTGGTGCTTTGATTTCGCAAAAAAGGC
326 GCACCATAAACATAGTCTTCTCATTAGGATACACGATACTGGTGCTTTGATTTCGCAAGAAAGGC
* * * *
851188 TTTTTT-CTGCCAATTTTAGTAAAGTCTAAGTTCGAGCCTTAAAAGAGACAAATATGGATTCTAG
391 TTTTTTCCTACCAATTTTAGTAAAGTCTAAGTTCGTGCCTCAAAAGAGACAAACATGGATTCTAG
* *
851252 GAATAATCTTCTTTCATTTTA
456 TAATGATCTTCTTTCATTTTA
* * * *
851273 TGAGTAGGTACTATAAACACATTCCCCTCATTAGGATAAATGATATTAATGATTTTCTTTTGCTT
1 TGAGTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCAT
851338 GGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCC-TAAATAAGACAAGCATC
66 GGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATC
* * * * * * ** *
851402 GATTTTCATAATTGTCTTCATTCTGTTCAAGGTTGGTAACTGAAAACACATTCCCTTCATTAGGA
131 GATTCTCGTAATAGTCTCCATTCTTTTCAAGGTTGGGAACCAAAAACACATTCCCTTTATTAGGA
* * *
851467 TACATGACATTGATGCTTTAGTGTCGCAAGAAAAGCTTTT-TTTCCATTGCTTATGATAGAATGA
196 TACATGACATTGATGCTTTAGTGTCGCAAGAAAAGCTTTTCTTTCCATTGTTTTTGATAGAATTA
* * * * * *
851531 AAGCTTGTCTCTTAAATAAGAAAAAGAAGAATAGTCATACTAATCCCCATACTTTTCAGGATGT-
261 AAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTCAGGAT-TA
** * * *
851595 GGTGCCACAACCATAGTCTTCTCATTAGGATACACGATACTGGTGCTTTGATTTCGTAAGAAAGG
325 GGCACCATAAACATAGTCTTCTCATTAGGATACACGATACTGGTGCTTTGATTTCGCAAGAAAGG
* *
851660 CTTTTTTCCCGA-CAATTTTAGTAAAGTCTATA-TTCGTGCCTCAAAAGAGATAAACATGGATTC
390 CTTTTTT-CCTACCAATTTTAGTAAAGTCTA-AGTTCGTGCCTCAAAAGAGACAAACATGGATTC
* *
851723 TACTAAAGATCTTCTTTCATTTTA
453 TAGTAATGATCTTCTTTCATTTTA
** * * **
851747 TGAGTAGGCGTTATAAACACATTCTCCTTATTAGGATAAATGATAATGATGATTTTCTTTTGTGT
1 TGAGTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCAT
** * * * *
851812 CAAAATCTTTTCTTTG-CCTTTTTTTCTTAAAATCAATGTTCATCCCTTAAATAAGACAAGCTTC
66 GGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATC
* * * * **
851876 AATTCTCATAATAGTGC-CCACTCTTTTCAAGGTTAGGAACTGAAAACACATTCCCTTTATTAGG
131 GATTCTCGTAATAGT-CTCCATTCTTTTCAAGGTTGGGAACCAAAAACACATTCCCTTTATTAGG
* * * * * * * *
851940 GTACATGACATTAATGTTTTAGTGCCGCAAGAAAAGCTTTTCTTTCCATTGCTTATGATAAAATG
195 ATACATGACATTGATGCTTTAGTGTCGCAAGAAAAGCTTTTCTTTCCATTGTTTTTGATAGAATT
** * * * * * *
852005 AAAGTTTACCTCTTAAAAAAGACAAACACGAATACACATACTAATGCCC-TTACTTTTCTGGATG
260 AAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCCATT-CTTTTCAGGATT
* * ** *
852069 AGGTACCATAAACATAGTCTTTTTTTTAGGATACACGATACTAGTGCTTTGATTTCGCAAGAAAG
324 AGGCACCATAAACATAGTCTTCTCATTAGGATACACGATACTGGTGCTTTGATTTCGCAAGAAAG
* * * * * * *
852134 GCTTTTTCCCTAACAATTTTAGTAAAATCTATGTTCGTGCCTCAAAAAAGACAAATAAGGATTCT
389 GCTTTTTTCCTACCAATTTTAGTAAAGTCTAAGTTCGTGCCTCAAAAGAGACAAACATGGATTCT
*
852199 AGTAATGATCTTTTTTCATTTTA
454 AGTAATGATCTTCTTTCATTTTA
* * * * *
852222 TGAGTAGACACTATAAACACATTCTCTTCTTTAGGATAAATGATATTGACGATTTTCTTTTGCGT
1 TGAGTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCAT
* * * * * *
852287 GGAAATCTTTTCTTTGCCTTATTTTCCTTAAAATGAAAGTTTATCCCTTGAATAAGATAAGCATT
66 GGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATC
* * * * *
852352 GATTCTTGTAATAGTCTCCATTATTTTCAAGGTTGGCAACCAAAAACACATTCCCTTTTTTAGGG
131 GATTCTCGTAATAGTCTCCATTCTTTTCAAGGTTGGGAACCAAAAACACATTCCCTTTATTAGGA
* * *
852417 TACATGACATTAATGCTTTCGTGTCGCAAGAAAAGCTTTTCTTTCCATTGTTTTTGATAGAATGA
196 TACATGACATTGATGCTTTAGTGTCGCAAGAAAAGCTTTTCTTTCCATTGTTTTTGATAGAATTA
* * ** * * *
852482 AAGTTTGTCTTTTAAATAAGACAAACATGAATACTCGTGTTAATCTCCACTCTTTTTTA-GATTA
261 AAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCCATTC-TTTTCAGGATTA
* * * * **
852546 GGCACCATAAACATAGTCTTTTCATTAGGATACACGATATTGGAGCTTTGGTTTCTTAAGAAAGG
325 GGCACCATAAACATAGTCTTCTCATTAGGATACACGATACTGGTGCTTTGATTTCGCAAGAAAGG
* * * * *
852611 CTTTTTTCCCCATCAATTTTATTAAAGTTTAAGTTCGAGCCTCAAAAGAGACAAAC-TGGATTCT
390 CTTTTTT-CCTACCAATTTTAGTAAAGTCTAAGTTCGTGCCTCAAAAGAGACAAACATGGATTCT
*
852675 AGTAATGATCTTCTTTCATTTTT
454 AGTAATGATCTTCTTTCATTTTA
* * * * * * *
852698 TGTGTAGGCCCTATAAACACATTCTGCTTATTAGGGTAAATGATTTTGATGATTTTCTTTTACAT
1 TGAGTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCAT
* * *
852763 GAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTTATCCCTTAAATAAGACAAGTATC
66 GGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATC
** * * * * *
852828 GCCTCTCGTAACAGTCTCCATTCTTGTCATGGTTGGGAACCAAAAGCACATTCCCTTTATTATGA
131 GATTCTCGTAATAGTCTCCATTCTTTTCAAGGTTGGGAACCAAAAACACATTCCCTTTATTAGGA
* * * ** *
852893 TACGTGACATTAAAGCTTTAGTGTCGCAAGAAAAAATTTTCTTTCCATTGTTTTTGATAAAATTA
196 TACATGACATTGATGCTTTAGTGTCGCAAGAAAAGCTTTTCTTTCCATTGTTTTTGATAGAATTA
* * * * * *
852958 AATTTTGTCTATTAAATAAGACAAACATGAATACTCGTGCTAATCCCCATTCTTTTAAAGATTAG
261 AAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTCAGGATTAG
* * * * * *
853023 GAACCATTAACTTAGTCTTCTCATTAGGATACACGATACTAGTACTTTGATTTCGCAACAAAGG-
326 GCACCATAAACATAGTCTTCTCATTAGGATACACGATACTGGTGCTTTGATTTCGCAAGAAAGGC
** * * *
853087 TTTTTTTTTCGCCAATTTTAGTAAAGTCTAAGTTCGTGCCTTAAAAGAGACAAATATGGATTCTA
391 TTTTTTCCT-ACCAATTTTAGTAAAGTCTAAGTTCGTGCCTCAAAAGAGACAAACATGGATTCTA
*
853152 GTAATAATCTTCTTTCATTTTA
455 GTAATGATCTTCTTTCATTTTA
* * * *
853174 TAAGTAGGCACTATAAACACATTCCCCTCATTAGGATAAATGATATTGATGAATTGCTTTTGCAT
1 TGAGTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCAT
853239 GGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATC
66 GGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATC
* * * ** * * *
853304 GATTTTCATAATAGTCTTCATTCTTTTCAAGGTTGGGAACTGAAAACACATTCTCTTCAATAGGA
131 GATTCTCGTAATAGTCTCCATTCTTTTCAAGGTTGGGAACCAAAAACACATTCCCTTTATTAGGA
* * * * *
853369 TACATGACATTGATGCTTTAATGTCGCAAGAAAAGCTTTT-TTTCCATTGCTTATGACAGAATAA
196 TACATGACATTGATGCTTTAGTGTCGCAAGAAAAGCTTTTCTTTCCATTGTTTTTGATAGAATTA
* * * * * *
853433 AAGCTTGTCTCTTAAATAAGATAAACATGAATACACTTACTAATCCCCATACTTTTTCAGGATGA
261 AAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCCATTC-TTTTCAGGATTA
* * * ** * *
853498 GGCACCTTAAAGATAGTTTTCTCATTAGGATACTTGATACTGGGGCTTTGATTTTGCAAGAAAGG
325 GGCACCATAAACATAGTCTTCTCATTAGGATACACGATACTGGTGCTTTGATTTCGCAAGAAAGG
* * * * * *
853563 CTGTTTTCCTGCCAATTTTAGTAAAATCTATGTTCGTGCCTTAAAAGAGACAAACATAGATTCTA
390 CTTTTTTCCTACCAATTTTAGTAAAGTCTAAGTTCGTGCCTCAAAAGAGACAAACATGGATTCTA
*
853628 GT-ATAATCTTCTTTCATTTTA
455 GTAATGATCTTCTTTCATTTTA
* ** * * * * * * * **
853649 TGATTAAACGCTATAAACATATGCTCATTATTAGGGTAAATGATATTGATAATTTTCTTTTGTTT
1 TGAGTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCAT
* * * * *
853714 GGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATAAAAGGTCATCACTTAAAAAAGACAAACATC
66 GGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATC
* * * * * * *
853779 GATTCTCGTAGTAGTCTCCGTTCTTTTCAAGATTGGGAACCTAAAACACATTCCATTTGTTAGCA
131 GATTCTCGTAATAGTCTCCATTCTTTTCAAGGTTGGGAACCAAAAACACATTCCCTTTATTAGGA
* * * * * * * * ** *
853844 TACATGACATTGATACTTTGGTATTGTAGGAAATGCTTTTCTTTCCCTCATTTTTCATAGAATTA
196 TACATGACATTGATGCTTTAGTGTCGCAAGAAAAGCTTTTCTTTCCATTGTTTTTGATAGAATTA
** * *
853909 AAGTTTTGTCTCAAAAATAAGGCAAACATGAATACTCGTACTAAT
261 AAG-TTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAAT
853954 TCACATTTTC
Statistics
Matches: 4194, Mismatches: 795, Indels: 118
0.82 0.16 0.02
Matches are distributed among these distances:
466 15 0.00
467 150 0.04
468 116 0.03
469 40 0.01
470 65 0.02
472 3 0.00
473 234 0.06
474 665 0.16
475 1335 0.32
476 1320 0.31
477 235 0.06
478 16 0.00
ACGTcount: A:0.32, C:0.17, G:0.14, T:0.37
Consensus pattern (476 bp):
TGAGTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCAT
GGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATC
GATTCTCGTAATAGTCTCCATTCTTTTCAAGGTTGGGAACCAAAAACACATTCCCTTTATTAGGA
TACATGACATTGATGCTTTAGTGTCGCAAGAAAAGCTTTTCTTTCCATTGTTTTTGATAGAATTA
AAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTCAGGATTAG
GCACCATAAACATAGTCTTCTCATTAGGATACACGATACTGGTGCTTTGATTTCGCAAGAAAGGC
TTTTTTCCTACCAATTTTAGTAAAGTCTAAGTTCGTGCCTCAAAAGAGACAAACATGGATTCTAG
TAATGATCTTCTTTCATTTTA
Found at i:854196 original size:282 final size:285
Alignment explanation
Indices: 853679--854234 Score: 638
Period size: 282 Copynumber: 2.0 Consensus size: 285
853669 ATGCTCATTA
**
853679 TTAGGGTAAATGATATTGATAATTTTCTTTTGTTTGGAAATCTTTTCTTTGCCCTATTTTCCTTA
1 TTAGGGTAAATGATATTGATAATTTTCTTTTGCGTGGAAATCTTTTCTTTGCCCTATTTTCCTTA
* * ** *
853744 AAATAAAAGGTCATCACTTAAAAAAGACAAACATCGATTCTCGTAGTAGTCTCCGTTCTTTTCAA
66 AAATAAAAGGTCATCACTT---AAAGACAAACATCGATTATCATAACAGTCTCCATTCTTTTCAA
* * * * *
853809 GATTGGGAACCTAAAACACATTCCATTTGTTAGCATACATGACATTGATACTTTGGTATTGTAGG
128 GATTGGGAACCGAAAACACATTCCATTCGTTAGCATACATGACATTGATACTTTGGTACTGCAAG
* * * * * * **
853874 AAATGCTTTTCTTTCCCTCATTTTTCATAGAATTAAAGTTTTGTCTCAAAAATAAGGCAAACATG
193 AAAAGCTTTTCTTTCCATCACTTATCATAGAATCAAAG-TTTGTCTCAAAAATAAGACAAACACA
*
853939 AATACTCGTACTAATTCACATTTTCTTCT
257 AATACACGTACTAATTCACATTTTCTTCT
* * *
853968 TTAGGTTAAATGATATTGATGATTTTCTTTTGCGTGGAAAT-TTTTTTTTGCCCTATTTTCCTTA
1 TTAGGGTAAATGATATTGATAATTTTCTTTTGCGTGGAAATCTTTTCTTTGCCCTATTTTCCTTA
* * * ** * * *
854032 AAATCAAAGTTCATCCCTT-AA-AC-TGCATCGATTATCATAACAGTCTCTATTTTTTTCAAGGT
66 AAATAAAAGGTCATCACTTAAAGACAAACATCGATTATCATAACAGTCTCCATTCTTTTCAAGAT
* * * *
854094 TGGGAACCGAGAACACATTCCCTTCGTTAGGATACATGACATTGATGCTTTAGCGT-CT-CAAGA
131 TGGGAACCGAAAACACATTCCATTCGTTAGCATACATGACATTGATACTTT-G-GTACTGCAAGA
** * ***
854157 AAAGCTTTTCTTTCCATTGCTTATGATAGAATCAAAGTTTGTCTCTTGAATAAGACAAACACAAA
194 AAAGCTTTTCTTTCCATCACTTATCATAGAATCAAAGTTTGTCTCAAAAATAAGACAAACACAAA
854222 TACACGTACTAAT
259 TACACGTACTAAT
854235 CCCCATACGT
Statistics
Matches: 223, Mismatches: 42, Indels: 12
0.81 0.15 0.04
Matches are distributed among these distances:
281 34 0.15
282 106 0.48
283 4 0.02
284 4 0.02
288 38 0.17
289 37 0.17
ACGTcount: A:0.30, C:0.17, G:0.14, T:0.38
Consensus pattern (285 bp):
TTAGGGTAAATGATATTGATAATTTTCTTTTGCGTGGAAATCTTTTCTTTGCCCTATTTTCCTTA
AAATAAAAGGTCATCACTTAAAGACAAACATCGATTATCATAACAGTCTCCATTCTTTTCAAGAT
TGGGAACCGAAAACACATTCCATTCGTTAGCATACATGACATTGATACTTTGGTACTGCAAGAAA
AGCTTTTCTTTCCATCACTTATCATAGAATCAAAGTTTGTCTCAAAAATAAGACAAACACAAATA
CACGTACTAATTCACATTTTCTTCT
Found at i:856059 original size:476 final size:475
Alignment explanation
Indices: 853968--862793 Score: 9706
Period size: 476 Copynumber: 18.7 Consensus size: 475
853958 ATTTTCTTCT
* * *
853968 TTAGGTTAAATGATATTGATGATTTTCTTTTGCGTGGAAAT-TTTTTTTTGCCCTATTTTCCTTA
1 TTAGGATAAATGATATTGATGATTTTCTTTTGCGTGAAAATCTTTTCTTTGCCCTATTTTCCTTA
* * * * * *
854032 AAATCAAAGTTCATCCC-T---TAA-AC-TGCATCGATTATCATAACAGTCTCTATTTTTTTCAA
66 AAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAATAGTCTCCATTCTTTTCAA
* ** * *
854091 GGTTGGGAACCGAGAACACATTCCCTTCGTTAGGATACATGACATTGATGCTTTAGCGTCTCAAG
131 GGTTGGGAACC-AAAACACATTCCCTTTATTAGGATACATGACATTGATGCTTTAGTGTCGCAAG
* * * **
854156 AAAAGCTTTTCTTTCCATTGCTTATGATAGAATCAAAGTTTGTCTCTTGAATAAGACAAACACAA
195 AAAAGCTTTTCTTTCCATTGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGA
* * * * * *
854221 ATACACGTACTAATCCCCATACGTTTT-AGGATGAGGCACCTTAAACATAGTCGTCTCACTAGGA
260 ATACTCGTACTAATCCCCATTC-TTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGA
* * ** * **
854285 TACCCGATACTAGG-GCTTTGGTTTTGCAAGAAAAGCTTTTTTCCTGCCAATTTTAGTAAAGTCT
324 TACACGATACT-GGTGCTTTGATTTCACAAGAAAGGCTTTTTTCCCACCAATTTTAGTAAAGTCT
** * * * * *
854349 ATCTTCGTGTCTCAAAAGAGACAAACATAGATTCTAGTATTGATATTCTTTCATTTTATGATTAG
388 AAGTTCGTGCCTCAAAAGAGACAAACATGGATTCTAGTAATGATCTTCTTTCATTTTATGAGTAG
* * * *
854414 GCACTATAAGCATATGCTCATCA
453 GCACTATAAACACATTCTCCTCA
* * * ** *
854437 TTAGGGTAAATGATGTTCATGATTTTCTTTTGTTTGAAAATCTTTTCTTTGCCTTATTTTCCTTA
1 TTAGGATAAATGATATTGATGATTTTCTTTTGCGTGAAAATCTTTTCTTTGCCCTATTTTCCTTA
* * * * *
854502 AAATAAAAGTTCATCACTTAAATAAGATAAACATCGATTCTCGTAATAGTCTCTATTCTTTTC-A
66 AAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAATAGTCTCCATTCTTTTCAA
* * * * * ** *
854566 GGATTGGGAACCTAAAACACATTCCATTCATTAGCATACATGACATTGATGCTTTGGTATCATAG
131 GG-TTGGGAACC-AAAACACATTCCCTTTATTAGGATACATGACATTGATGCTTTAGTGTCGCAA
* * * * * ** *
854631 GAAAAGCTTTT-TTTCCCTTGTTTTTCATGGAATTAAAGTTTTTCTCGAAAATAAGGCAAACATG
194 GAAAAGCTTTTCTTTCCATTGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATG
* * ** *
854695 AATACTTGTACTAACCCCCATTCTTTTTTGGATTAGGCACCATAAACATAGTCTTCTCATTATGA
259 AATACTCGTACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGA
* * * * * *
854760 TACATGATATTGGTGCTTT-AGTTTCACAAGAAAGGCTTTTTTCCTACTAATTTTACTAAAGTCC
324 TACACGATACTGGTGCTTTGA-TTTCACAAGAAAGGCTTTTTTCCCACCAATTTTAGTAAAGTCT
* *
854824 AAGTTCGTGCCTCGAAAGAGACAAACATGGATTCTAGTAAAGA---TCTTTCATTTTATGAGTAG
388 AAGTTCGTGCCTCAAAAGAGACAAACATGGATTCTAGTAATGATCTTCTTTCATTTTATGAGTAG
*
854886 GCACCATAAACACATTCTCCTCA
453 GCACTATAAACACATTCTCCTCA
*
854909 TTAGGATAGATGATATTGATGATTTTCTTTTGCGTGAAAATCTTTTCTTTGCCCTATTTT-CTTA
1 TTAGGATAAATGATATTGATGATTTTCTTTTGCGTGAAAATCTTTTCTTTGCCCTATTTTCCTTA
* * * *
854973 AAATCAAAGTTTATCCTTTAAATAAGACAAGCATCGATTCTCGTAGTAGTCTTCATTCTTTTCAA
66 AAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAATAGTCTCCATTCTTTTCAA
* * * *
855038 GGTTGGGAACTCAAAACACATTCTCTTCATT-GAGATACATGACATTGATGCTTTGGTCTCGCAA
131 GGTTGGGAAC-CAAAACACATTCCCTTTATTAG-GATACATGACATTGATGCTTTAGTGTCGCAA
* * * * **
855102 GAAAAGCTTTTCTTTCCATTGCTTATGATAGAATGAAAGTTTGTCTCTTAAACAATTCAAACATG
194 GAAAAGCTTTTCTTTCCATTGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATG
* * * * ** ** * *
855167 AATACACGTCCTAATCCCCATACTTTTCAAGACGAGGTGCCATAAACATACTCTTCTGATTAGGA
259 AATACTCGTACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGA
* * **** *
855232 TACACGATACTGGTGTTTTGATTTCGCAAGAAAGG--TTTTTCCTGGAAATTCTAGTAAAGTCTA
324 TACACGATACTGGTGCTTTGATTTCACAAGAAAGGCTTTTTTCCCACCAATTTTAGTAAAGTCTA
* * *
855295 TGTTCGTGCCTCAAAAGAGACAAACATGGATTCTAGTAATTATCTTCTTTCATTTTTTGAGTAGG
389 AGTTCGTGCCTCAAAAGAGACAAACATGGATTCTAGTAATGATCTTCTTTCATTTTATGAGTAGG
*
855360 CACTATAAACACATTCTCCTTA
454 CACTATAAACACATTCTCCTCA
* * * *
855382 TTAGGATAAATGATATTGATGATTTTCTTTTGTGTGGAAATCTTTTCTTTGCCTTATTTTTCTTA
1 TTAGGATAAATGATATTGATGATTTTCTTTTGCGTGAAAATCTTTTCTTTGCCCTATTTTCCTTA
* * *
855447 AATTCAAAGTTCATCTCC-TAAATAAG-CAAGCATCGATTTTCGTAATAGTCTCTATTCTTTTCA
66 AAATCAAAGTTCATC-CCTTAAATAAGACAAGCATCGATTCTCGTAATAGTCTCCATTCTTTTCA
* * * *
855510 AGGTTGGGAACCGAAAAGACATTCCCTTCATTAGGATGCTTGAC-TCTGATGCTTTAGTGTCGCA
130 AGGTTGGGAACC-AAAACACATTCCCTTTATTAGGATACATGACAT-TGATGCTTTAGTGTCGCA
* * * * * * * **
855574 AGAAAAGCTTTTCTGTCCATTGCTTGTGATTGAATTAAAGTTTGTCTGTTAAAGAAGACAAACGC
193 AGAAAAGCTTTTCTTTCCATTGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAT
* * * * *
855639 GAATACACGTACTAATCCCCATACTTTTCAGGATGAGGTACCATAAACATAGTCTTCTAATTAGG
258 GAATACTCGTACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGG
* * ** * *
855704 ATACACGGTAATGGTGCTTTGATTTCACAAGAAAGGCTTTTTTCTTAGCAATTTTAGCAAAGTCT
323 ATACACGATACTGGTGCTTTGATTTCACAAGAAAGGCTTTTTTCCCACCAATTTTAGTAAAGTCT
* * * * * * * *
855769 AAGTTTGTTCCTCAAAAGAGACAAACATTGATTCTAGCAATGACCTTCATTCATGTTTTTTAGTA
388 AAGTTCGTGCCTCAAAAGAGACAAACATGGATTCTAGTAATGATCTTCTTTCAT-TTTATGAGTA
*
855834 GGCACTATAAACACATTCTCCTTA
452 GGCACTATAAACACATTCTCCTCA
* * *
855858 TTAGGATAAATGATATTGATGATTTTCTTTTTCGTGAAAAACTTTTCTTTGCCCTATTTTACTTA
1 TTAGGATAAATGATATTGATGATTTTCTTTTGCGTGAAAATCTTTTCTTTGCCCTATTTTCCTTA
* *
855923 AAATCAAAGTGT-ATCTCTTAAATAAGACAAGCATTGATTCTCGTAATAGTCTCCATTCTTTTCA
66 AAATCAAAGT-TCATCCCTTAAATAAGACAAGCATCGATTCTCGTAATAGTCTCCATTCTTTTCA
* * * * * *
855987 TGGTTAGGAACCAAAACTACATTCCCTTTACTAGTATACAT-ACATTAATGCTTTAGTGTCACAA
130 AGGTTGGGAACCAAAAC-ACATTCCCTTTATTAGGATACATGACATTGATGCTTTAGTGTCGCAA
* * *
856051 GAAAAGCTTTTCTTTCCATTGTTTTTGATCGAATCAAAGTTTGTCTCTTAAATAAAACGAACATG
194 GAAAAGCTTTTCTTTCCATTGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATG
* * *
856116 AACACTCGTGCTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAG-CTTTTTCATTAGG
259 AATACTCGTACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTC-TTCTCATTAGG
* ** * *
856180 ATGCGTGATACAT-ATGCTCTGATTTCGA-AAGAAAGGCTTTTTTCCCACCAATTTTAGTAAAGT
323 ATACACGATAC-TGGTGCTTTGATTTC-ACAAGAAAGGCTTTTTTCCCACCAATTTTAGTAAAGT
* * * * * * *
856243 CTAAGTTCATGCCTCAAAAGAGATAAACAAGGATTCTAGTAATGATTTTTTTTTCATTTTTTGAT
386 CTAAGTTCGTGCCTCAAAAGAGACAAACATGGATTCTAGTAATGA-TCTTCTTTCATTTTATGAG
* *
856308 TAGGTACTATAAGCACATTCTCCTCA
450 TAGGCACTATAAACACATTCTCCTCA
* * * * * * ** *
856334 ATAAGATTATTGACATTGATGATTTTCTCTTGC-ACAGTAATCTTTTCTTTGCCCTATTTTCCTT
1 TTAGGATAAATGATATTGATGATTTTCTTTTGCGTGA-AAATCTTTTCTTTGCCCTATTTTCCTT
* * * *
856398 AAAATCAAAGTTTATCCCTTAAATAAGGCAAGCATTGATTCTCGTAATAGT-TCCTTTCTTTTCA
65 AAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAATAGTCTCCATTCTTTTCA
** * * * ** * *
856462 TTGTTAGGAACCAAAATCACATTCTCTTTATTAGGATACATGATATTGACACTTTATTTTCGCCA
130 AGGTTGGGAACCAAAA-CACATTCCCTTTATTAGGATACATGACATTGATGCTTTAGTGTCG-CA
* * * * *
856527 A-AAAAGCTTTTCTTTCAATTATTTTTGATAGAATGAAAGATTTCGT-T-GTAAATAAGGCAAAC
193 AGAAAAGCTTTTCTTTCCATTGTTTTTGATAGAATCAAAG-TTT-GTCTCTTAAATAAGACAAAC
* * *
856589 ATGAATACTCGTACTAATCCCCATTGTTTTCAAGATGAGGCACCATAAACATAGTCTTCTCATTA
256 ATGAATACTCGTACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTA
* * * * * * * * *
856654 GGATACATGATATTGGAGCTTAG-GTTCACAACAAATGCTTTTTTCCCACTAATTTTACTAAAGT
321 GGATACACGATACTGGTGCTTTGATTTCACAAGAAAGGCTTTTTTCCCACCAATTTTAGTAAAGT
*
856718 CTAAGTTTGTGCCTCAAAAGAGACAAACATGGATTCTAGTAATGATCTGT-TTTCATTTTATGAG
386 CTAAGTTCGTGCCTCAAAAGAGACAAACATGGATTCTAGTAATGATCT-TCTTTCATTTTATGAG
** * *
856782 TAGGCACTATAAACATGTTCTCTTTA
450 TAGGCACTATAAACACATTCTCCTCA
* * * * *
856808 TTACGATAAATGATATTGAAGATTTT-TCTTTGCATGGAAATCCTTT-TTTGCCCTATTTTCCTT
1 TTAGGATAAATGATATTGATGATTTTCT-TTTGCGTGAAAATCTTTTCTTTGCCCTATTTTCCTT
** * * *
856871 AAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTTTTTACAGTTTCCATTCTTTTCA
65 AAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAATAGTCTCCATTCTTTTCA
* *
856936 AGGTTGGGAACCAAAAACACATTCCCTTTATTAAGATACATGACATTGATGCTTTAGTGTTGCAA
130 AGGTTGGGAACC-AAAACACATTCCCTTTATTAGGATACATGACATTGATGCTTTAGTGTCGCAA
* * * *
857001 GAAAAGCTTTTCTTTCCATTATTTTTGGTCGAATCAAAGTTTGTCTCTTAAATAAAACAAACATG
194 GAAAAGCTTTTCTTTCCATTGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATG
** * * * *
857066 AATACTAATGCTAATCCCCATTTTTTTCAGGATTAGGCACCATAAACATAGCCTTTTCATTAGGA
259 AATACTCGTACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGA
* * * *
857131 TGCATGATACTGGTGCTCTGATTTCGA-AAGAAAGGTTGTTTTTCCC-CCAATTTTAGTAAAGTC
324 TACACGATACTGGTGCTTTGATTTC-ACAAGAAAGGCT-TTTTTCCCACCAATTTTAGTAAAGTC
* * *
857194 TATA-TTCGTGCCTCAAAAGTGACAATCATGGATTCAAGTAATGATCTTCTTTCATTTTATGAGT
387 TA-AGTTCGTGCCTCAAAAGAGACAAACATGGATTCTAGTAATGATCTTCTTTCATTTTATGAGT
* *
857258 GGGCACTATAAACACATTCTCCTTA
451 AGGCACTATAAACACATTCTCCTCA
* * * * *
857283 TTAGGATAAATCATATTCATGATTTTCTTTTGCGTGGAAATCTTTTCTTTACCCTATTTTCCTTC
1 TTAGGATAAATGATATTGATGATTTTCTTTTGCGTGAAAATCTTTTCTTTGCCCTATTTTCCTTA
* * * * *
857348 AAATCAAAGTTCATCCCTCAAAAAAGACAAGAATTGGTTCTCGTAATAGTCTCCATTCTTTTCAA
66 AAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAATAGTCTCCATTCTTTTCAA
* * ** * * *
857413 GGTTGGGAACTAAAAACACATTCTCTACATTAAGATACATGACGTTGATGCTTTAGTGTCGCAAA
131 GGTTGGGAAC-CAAAACACATTCCCTTTATTAGGATACATGACATTGATGCTTTAGTGTCGCAAG
* *
857478 AAAAGCTTTTCTTTTCATTGTTTTTAATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGA
195 AAAAGCTTTTCTTTCCATTGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGA
* ** * * *
857543 ATACTC-TGCCTAATCCTAATTCTTTTCAGGATTAGGCGCCAAAAACATAGTCTTCTCATTGGGA
260 ATACTCGT-ACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGA
* * * * * * ** *
857607 TACAAGATACTTGTGCTTTTATTTCATAAGAATGGTTTTTTTCCTGCCAATTTTAGTAAAGT-TT
324 TACACGATACTGGTGCTTTGATTTCACAAGAAAGGCTTTTTTCCCACCAATTTTAGTAAAGTCTA
* * *
857671 ATTTCGTGCCTCAAAA-ATGACAAACATGGATTCTAGTAATGATCTTCTTTCATTTTATGATTCG
389 AGTTCGTGCCTCAAAAGA-GACAAACATGGATTCTAGTAATGATCTTCTTTCATTTTATGAGTAG
* *
857735 GCACTATAAACATC-CTCTCCCCA
453 GCACTATAAACA-CATTCTCCTCA
* * *** *
857758 TTCA-GATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGTTTTATTTTTCTT
1 TT-AGGATAAATGATATTGATGATTTTCTTTTGCGTGAAAATCTTTTCTTTGCCCTATTTTCCTT
* * * * * *
857822 AAAATAAAAGTACATCACTTAAATAAGATAAACATTGATTCTCGTAATAGTCTCCATTCGTTTT-
65 AAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAATAGTCTCCATTC-TTTTC
* *** * * * * *
857886 -AGGATTGGGAACCTAAAAGACATTTTGTTCATTAGGATGCATGACATAGATGCTTTCGTATCGC
129 AAGG-TTGGGAACC-AAAACACATTCCCTTTATTAGGATACATGACATTGATGCTTTAGTGTCGC
* * * * * * *
857950 AAGAAAAGCTTTT-TTTTCACTATTTTTCATAGAATTAAAGTTTGTCTCTAAAATAAGGCAAACA
192 AAGAAAAGCTTTTCTTTCCATTGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACA
* *
858014 TGAATACTCGTACTAAT-CCCATT-TGTTTCAGGAATAGGCACCATAAACATAGTCTTCTCTTTA
257 TGAATACTCGTACTAATCCCCATTCT-TTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTA
* * * * * *
858077 GGATACACGATATTGGTGCTTT-AGTTTCGCAAGAAAGGTTTTTTTCCTACTAATTTTACTAAAG
321 GGATACACGATACTGGTGCTTTGA-TTTCACAAGAAAGGCTTTTTTCCCACCAATTTTAGTAAAG
* *
858141 TGTATGTTCGTGCCTCAAAAGAGACAAACATGGATTCTAGTAATGATCTTCTTTCATTTTATGAG
385 TCTAAGTTCGTGCCTCAAAAGAGACAAACATGGATTCTAGTAATGATCTTCTTTCATTTTATGAG
858206 TAGGCACTATAAACACATTCTCC-CTA
450 TAGGCACTATAAACACATTCTCCTC-A
*** * * * *
858232 TTAGGATAAATGATATTGATGATTTTCTTTTATATGGAAATCTTGTCTTTGCCTTATTTTCTTTA
1 TTAGGATAAATGATATTGATGATTTTCTTTTGCGTGAAAATCTTTTCTTTGCCCTATTTTCCTTA
* * * * * *
858297 AAATCAAAGTTCGA-CCCTCAAAAAAAGACAAGAATCGATTCTCGTAACAGTATCTATTCCTTTT
66 AAATCAAAGTTC-ATCCCT-TAAATAAGACAAGCATCGATTCTCGTAATAGTCTCCATT-CTTTT
* * * *
858361 -AAGGTTGGGAACCAAAAACACATTCCTTTTATTAAGATACACGACATTGAAGCTTTAGTG-CTG
128 CAAGGTTGGGAACC-AAAACACATTCCCTTTATTAGGATACATGACATTGATGCTTTAGTGTC-G
* *
858424 CAAGAAAAGCTTTTCTTTTCATT-TTTTTGATAGAATCAAAGTTTGTCTTTTAAATAAGACAAAC
191 CAAGAAAAGCTTTTCTTTCCATTGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAAC
* ** *
858488 ATGAATACTCAG-CCTAATCCTAATTCTTTTCAGGATTAGGCACCATAAACATAATCTTCTCATT
256 ATGAATACTC-GTACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATT
* * * * * * *
858552 GGGATACAAGATACTTGTTCTTTTATTTCGA-GAGAAAGG--TTTTTCCCCCCAATTTTAGTAAA
320 AGGATACACGATACTGGTGCTTTGATTTC-ACAAGAAAGGCTTTTTTCCCACCAATTTTAGTAAA
* * *
858614 GTTTAAGTTTGTGCCTCAAAAGAGACAAACAAGGATTCTAGTAATGATCTTCTTTCATTTTATGA
384 GTCTAAGTTCGTGCCTCAAAAGAGACAAACATGGATTCTAGTAATGATCTTCTTTCATTTTATGA
* *
858679 TTAGGCACTATAAACACATTCTCCTTA
449 GTAGGCACTATAAACACATTCTCCTCA
* * *
858706 TTTGGATAAGTGATATTGATGATTTTCTTTTGCGTGAAAATCTTTTCTTTACCCTATTTTCCTTA
1 TTAGGATAAATGATATTGATGATTTTCTTTTGCGTGAAAATCTTTTCTTTGCCCTATTTTCCTTA
** * ** * * *
858771 AAATCAAAGTTTGTTCCTTAAATAAGACAAGCATTAATTCTCATAATAGTCTCTATTCCTTTCAA
66 AAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAATAGTCTCCATTCTTTTCAA
* * * * * * *
858836 GGTTGGGAACCAAAACCCGTTTCCC-TTATTAGGATACATCACATTAAAGCCTTAGTGTTGCAAG
131 GGTTGGGAACCAAAACAC-ATTCCCTTTATTAGGATACATGACATTGATGCTTTAGTGTCGCAAG
858900 AAAAGCTTTTCTTTCCATTGTTTTTGATCA-AATCAAAGTTTGTCTCTTAAATAAGACAAACATG
195 AAAAGCTTTTCTTTCCATTGTTTTTGAT-AGAATCAAAGTTTGTCTCTTAAATAAGACAAACATG
* ** *
858964 AATACACGTGGTAATCCCCATTCTTTTCTGGATTAGGCACCATAAACATAGTCTTCTCATTAGGA
259 AATACTCGTACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGA
* * * * * * *
859029 TGCACAATACTGGTGCTCTGATATTGA-AAGAAAGGCTTGTTTCTCACCACTTTTAGTAAAGTCT
324 TACACGATACTGGTGCTTTGAT-TTCACAAGAAAGGCTTTTTTCCCACCAATTTTAGTAAAGTCT
* * * *
859093 AAGTTCATGCCTCAAAAGAGACAAACAAGGATTCTAGTAATGATCTTCTTTCATTTTTTGATTAG
388 AAGTTCGTGCCTCAAAAGAGACAAACATGGATTCTAGTAATGATCTTCTTTCATTTTATGAGTAG
* **
859158 GTACTATAAATGCATTCTCCTCA
453 GCACTATAAACACATTCTCCTCA
* * *
859181 ATAGG----AT-A-A-T--TGA----C-ATTG-ATG---A--TTTTCTTTGCCCTATTTTCCTTA
1 TTAGGATAAATGATATTGATGATTTTCTTTTGCGTGAAAATCTTTTCTTTGCCCTATTTTCCTTA
* * * *
859226 AAATCAAAGTTTATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCTATTCTTTTCAA
66 AAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAATAGTCTCCATTCTTTTCAA
* * * *
859291 TGTTGGGAACCAAAAACACATTCTCTTTATTAGGAAACATGACATTGATGCTTTAGTGTTGCAAG
131 GGTTGGGAACC-AAAACACATTCCCTTTATTAGGATACATGACATTGATGCTTTAGTGTCGCAAG
* *
859356 AAAAGCTTTTCTTTCAATTGTTTGTT-ATAGAATCAAA-TATTGTCTCTTAAATAAGGCAAACAT
195 AAAAGCTTTTCTTTCCATTGTTT-TTGATAGAATCAAAGT-TTGTCTCTTAAATAAGACAAACAT
* * * * ** * *
859419 GAATAC-CCTACTAATTCCCATTCTTTTTAGGATGAGGCATGAAAAACATGGTCTTCTCATTAGG
258 GAATACTCGTACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGG
* * * * * * *
859483 ATGCACAATACTAGTGCTTTGATTTCCCAGGAAAGGCTTTTTTCCCGCCAAGTTTAGTAAAGT-T
323 ATACACGATACTGGTGCTTTGATTTCACAAGAAAGGCTTTTTTCCCACCAATTTTAGTAAAGTCT
* * * * * * * *
859547 TATTTCGTGCCTCAAAATAGGCAAAGATAGATTCTAGTAATGATCTTCTTTCATTTTATGATTCG
388 AAGTTCGTGCCTCAAAAGAGACAAACATGGATTCTAGTAATGATCTTCTTTCATTTTATGAGTAG
859612 GCACTATAAACATC-TTCTCAC-CA
453 GCACTATAAACA-CATTCTC-CTCA
* * * * *
859635 TTTGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCATACTTTCCTTA
1 TTAGGATAAATGATATTGATGATTTTCTTTTGCGTGAAAATCTTTTCTTTGCCCTATTTTCCTTA
* * * * *
859700 AAATCAAAGATT-ATCCCTTAAATAAGACAAGCATCGATTCTCATTACAATTTCCATTCTTTTCA
66 AAATCAAAG-TTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAATAGTCTCCATTCTTTTCA
* * *** *
859764 ATGTTGGGAACAAATAACACATTCCCTTTATTAGGATACATGACATTGGCCCTTTAGTGTTGCAA
130 AGGTTGGGAACCAA-AACACATTCCCTTTATTAGGATACATGACATTGATGCTTTAGTGTCGCAA
* * *
859829 GAAAAGCTTTTCTTTCAATTGTTTTTGATAGAATCAAAGATTATCTCTTAAATAAGACAAACATG
194 GAAAAGCTTTTCTTTCCATTGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATG
* * * * * *
859894 AATACACGTACTAATCCCCATACTTTTTAGGATGAGGCACCTTAAACATTGTCTTCTCATTAGGA
259 AATACTCGTACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGA
* * * ** * * ** *
859959 TACCCGATATTGGGGCTTTGATTTTGCATGAAAGTCTTTTTTCCTGCCAATTTTAGTAAAGTTTA
324 TACACGATACTGGTGCTTTGATTTCACAAGAAAGGCTTTTTTCCCACCAATTTTAGTAAAGTCTA
* * * * * * * **
860024 TGTTCATGCCTCAAAAAAAACAAACATAGATTCTACTATTGATCTTCTTTCATTTTATGTTTAGG
389 AGTTCGTGCCTCAAAAGAGACAAACATGGATTCTAGTAATGATCTTCTTTCATTTTATGAGTAGG
* * * *
860089 CACTATAAACATATGCTCATTA
454 CACTATAAACACATTCTCCTCA
* * * * *
860111 TTA-GAGTAAATGATATTGATAATTTTCTTTTGCGTGGAAATATTTTCTTTGCCTTAATTTCCTT
1 TTAGGA-TAAATGATATTGATGATTTTCTTTTGCGTGAAAATCTTTTCTTTGCCCTATTTTCCTT
* * * * * * * *
860175 AAAATCAAAGTTCATCCTTTAAAAAAGATAAGCGTTGATTCTCCTAATAGTCTCTATTCCTTTCA
65 AAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAATAGTCTCCATTCTTTTCA
* * * *
860240 AGGTTGGGAACAAAAAAACTCATTCCCTTT-TTCAGGATACATGACATTAATGCTTTAGTGTCGA
130 AGGTTGGGAAC--CAAAACACATTCCCTTTATT-AGGATACATGACATTGATGCTTTAGTGTCGC
*
860304 AAGAAAAGCTTTTCTTTCCATTATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACA
192 AAGAAAAGCTTTTCTTTCCATTGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACA
* ** * *
860369 TGAATACTCATGTTAATCCCTATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTGTCATTAG
257 TGAATACTCGTACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAG
* * * * ** * *** *
860434 GATACACGATATTAGAGCTTTGGTTTTGCAAGAAAGGCTTTTTTTCTCGTGAATTTTATTAAAGT
322 GATACACGATACTGGTGCTTTGATTTCACAAGAAAGGC-TTTTTTCCCACCAATTTTAGTAAAGT
*
860499 CTAAGTTC-TAGCCTCAAAAGAGACAAACATGGATTCTAGTAATGATCTTCTTTCATTTTATGTG
386 CTAAGTTCGT-GCCTCAAAAGAGACAAACATGGATTCTAGTAATGATCTTCTTTCATTTTATGAG
*
860563 TAAGCACTATAAACACATTCTCCTCA
450 TAGGCACTATAAACACATTCTCCTCA
* * * *
860589 TTAGGATAAATGATATTGATGATTTTCTTTTACATGAAAATCTTTTCTTTGCCTTTTTTTCCTTA
1 TTAGGATAAATGATATTGATGATTTTCTTTTGCGTGAAAATCTTTTCTTTGCCCTATTTTCCTTA
* * * * * ** *
860654 AAATAAAAGTTCATCGCTTAAATAAGACAAACATCGATTCTCATAACAACCTCCATTCTTTT-TA
66 AAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAATAGTCTCCATTCTTTTCAA
* * * * *
860718 GGATT-GGAACCTAAAACACAATCCCTTCATTAGGATACATGACATTGAGGCTTTGGTGTCACAA
131 GG-TTGGGAACC-AAAACACATTCCCTTTATTAGGATACATGACATTGATGCTTTAGTGTCGCAA
* * *** * * *
860782 GAAAAG-TTTTTTTTCTACCATTTTAGATAGAATTAAAGCTTGTCTCTTAAATAAGACAAACATG
194 GAAAAGCTTTTCTTTCCATTGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATG
* * * * * *
860846 AATTCTCATACTAATCCCCAATCTTTTCATGATTAGGAACCATAAACGTAGTCTTCTCA-T----
259 AATACTCGTACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGA
*
860906 T--A-G-T--T--T-C---G------CAAGAAAGGCTTTTTTCCCACCAATTTTAGTAAAGACTA
324 TACACGATACTGGTGCTTTGATTTCACAAGAAAGGCTTTTTTCCCACCAATTTTAGTAAAGTCTA
* * * * *
860953 TGTTCGTGCCTCAAAAGAGACAATCGTGGATTCAAGTAACGATCTTCTTTCATTTTATGAGTAGG
389 AGTTCGTGCCTCAAAAGAGACAAACATGGATTCTAGTAATGATCTTCTTTCATTTTATGAGTAGG
* * *
861018 CATTACAAACACATTCTCCTTA
454 CACTATAAACACATTCTCCTCA
* ** * * *
861040 TTAGGGTAAATGATATCAATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCATTA
1 TTAGGATAAATGATATTGATGATTTTCTTTTGCGTGAAAATCTTTTCTTTGCCCTATTTTCCTTA
* *
861105 AAATCAAAGCTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAATAGTCTCCATTCTTTTCAT
66 AAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAATAGTCTCCATTCTTTTCAA
* * * *
861170 GGTTGGGAACCAAAATCACATTCTCTTTATTACGATACATGACATTGAAGCTTTAGTGTTGCAAG
131 GGTTGGGAACCAAAA-CACATTCCCTTTATTAGGATACATGACATTGATGCTTTAGTGTCGCAAG
* * * * *
861235 AAAAACTTTTCTTTCCATTATTTTTGATA-AAGTCAAAGTTCGTCTCTTAAATAGGACAAACAAG
195 AAAAGCTTTTCTTTCCATTGTTTTTGATAGAA-TCAAAGTTTGTCTCTTAAATAAGACAAACATG
* ** * * * * * *
861299 AATGCTTATGCTAATCCCCATTCTTTACAGGATTAAGAACCATAAACTTAGTCTTCTCGTTAGGA
259 AATACTCGTACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGA
* **
861364 TACACGATACTAGCACTTTGATTTCACAAGAAAGGCTTTTTTCCCACCAATTTTAGTAAAGTCTA
324 TACACGATACTGGTGCTTTGATTTCACAAGAAAGGCTTTTTTCCCACCAATTTTAGTAAAGTCTA
* * *
861429 AGTTCGTGCCTTAAAAGAGAC--ATATGGATTCTAGTAATAATCTTCTTTCATTTTATGAGTAGG
389 AGTTCGTGCCTCAAAAGAGACAAACATGGATTCTAGTAATGATCTTCTTTCATTTTATGAGTAGG
*
861492 CACTATAAACACATTC-CTTTCA
454 CACTATAAACACATTCTC-CTCA
* * * *
861514 TTAGCATAAATGATATTGATGATTTTCTTTTGCATTG-AAATCTTTTCTTTACCATATTTTCCTT
1 TTAGGATAAATGATATTGATGATTTTCTTTTGC-GTGAAAATCTTTTCTTTGCCCTATTTTCCTT
*
861578 AAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTC-CTGTAACAG-CTTCCATTCTTTT
65 AAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTC-GTAATAGTC-TCCATTCTTTT
* *
861641 CAAAGTTAGGAACCAAAACCACATTCCCTTTATTAGGATACATGACATTGATGCTTTAGTGTCGC
128 CAAGGTTGGGAACCAAAA-CACATTCCCTTTATTAGGATACATGACATTGATGCTTTAGTGTCGC
** * * * *
861706 AAGAAAAGCTTTTCTTTCCATCATTTTTAATAGAATCAAAGATTATCTCTTAAATATA-ACAAAT
192 AAGAAAAGCTTTTCTTTCCATTGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATA-AGACAAAC
* * * *
861770 ATGAATACTCGTACTAATCCCCATTCTTTTCAAGATGAGGCACTAGAAACATAGTCTTCTCATTA
256 ATGAATACTCGTACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTA
* ** * *
861835 GGATACACGATACTAGTGCTTTGATTTTGCAAGAAAGGCTTTTTTTCCACCATTTTTAGTAAAGT
321 GGATACACGATACTGGTGCTTTGATTTCACAAGAAAGGCTTTTTTCCCACCAATTTTAGTAAAGT
* * *
861900 CTATGTTCGTGCCTCAAAAGTA-ACAAACATTGATTCTAGTAATGATCTTCTTTCATTTTATGAT
386 CTAAGTTCGTGCCTCAAAAG-AGACAAACATGGATTCTAGTAATGATCTTCTTTCATTTTATGAG
* * * ** *
861964 TCGGCACAATAAACATATTCTTATCG
450 TAGGCACTATAAACACATTCTCCTCA
* * * ** *
861990 TTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCATTGTTCTATTTTTCTTA
1 TTAGGATAAATGATATTGATGATTTTCTTTTGCGTGAAAATCTTTTCTTTGCCCTATTTTCCTTA
* * * * *
862055 AAATAAAAGTTCATCCCTTAAATAACACAAACATCGATTCTCGTAACAATCTCCATTC--TT--A
66 AAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAATAGTCTCCATTCTTTTCAA
* * *
862116 GGATTGGGAACCAAAACCACATTCCCTTTATTAGGATACACGACATTGATGCTTTCGTGTCGTAA
131 GG-TTGGGAACCAAAA-CACATTCCCTTTATTAGGATACATGACATTGATGCTTTAGTGTCGCAA
* * * * * ** * *
862181 GAAAAGATTTT-TTTCCCTTGTTTTTCATAAAATTAAAGTTTGTCTCGAAAATAAGGCAAACATT
194 GAAAAGCTTTTCTTTCCATTGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATG
*
862245 AATACTCGTGCTAATCCCCATTCTTTGT-AGGATTAGGCACCATAAACATAGTCTTCTCATTAGG
259 AATACTCGTACTAATCCCCATTCTTT-TCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGG
* * * * * *
862309 ATAAATGATATTGGTGCTTT-AGTTTCACAAGAAA-GCTTTTTTCCTACTAATTTTACTAAAGTC
323 ATACACGATACTGGTGCTTTGA-TTTCACAAGAAAGGCTTTTTTCCCACCAATTTTAGTAAAGTC
* * * * *
862372 CAAGTTCGTGCCTTAAAAGAGACAAACATGGGTTCTAGTAAAGA---TCTTTCATTTTATAAGTA
387 TAAGTTCGTGCCTCAAAAGAGACAAACATGGATTCTAGTAATGATCTTCTTTCATTTTATGAGTA
* *
862434 GACACTATAAACACGTTCTCCTCA
452 GGCACTATAAACACATTCTCCTCA
* *
862458 TTAGAATAAATGATATTGATGATTTTCTTTTGCGTGAAAATCTTTTATTT-CGCCTATTTTCCTT
1 TTAGGATAAATGATATTGATGATTTTCTTTTGCGTGAAAATCTTTTCTTTGC-CCTATTTTCCTT
* * *
862522 AAAATCAACGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAATCGTCTCTATTCTTTTCA
65 AAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAATAGTCTCCATTCTTTTCA
* * *
862587 TGGTTGGGAACCAAAATCACCTTCCCTTTATTACGG-TACATGACATTGAAGCTTTAGTGTCGCA
130 AGGTTGGGAACCAAAA-CACATTCCCTTTATTA-GGATACATGACATTGATGCTTTAGTGTCGCA
* * *
862651 GGAAAAACTTTTCTTTCCATTGTTTTTGATAAAATCAAAGTTTGTCTCTTAAATAAGACAAACAT
193 AGAAAAGCTTTTCTTTCCATTGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAT
* * * * * *
862716 GAATACTAGTGCTAATCCCTATTCTTTTTAGGATTAGGAACCATAAACTTAGTCTTCTCATTAGG
258 GAATACTCGTACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGG
*
862781 ATACAGGATACTG
323 ATACACGATACTG
862794 TTGCAACGTG
Statistics
Matches: 7061, Mismatches: 1092, Indels: 405
0.83 0.13 0.05
Matches are distributed among these distances:
451 215 0.03
452 66 0.01
453 95 0.01
454 78 0.01
455 194 0.03
456 100 0.01
457 3 0.00
458 4 0.00
459 1 0.00
460 4 0.00
461 6 0.00
462 2 0.00
463 3 0.00
464 2 0.00
466 4 0.00
467 3 0.00
468 143 0.02
469 39 0.01
470 103 0.01
471 246 0.03
472 522 0.07
473 733 0.10
474 1268 0.18
475 1234 0.17
476 1504 0.21
477 281 0.04
478 206 0.03
479 2 0.00
ACGTcount: A:0.31, C:0.18, G:0.14, T:0.37
Consensus pattern (475 bp):
TTAGGATAAATGATATTGATGATTTTCTTTTGCGTGAAAATCTTTTCTTTGCCCTATTTTCCTTA
AAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAATAGTCTCCATTCTTTTCAA
GGTTGGGAACCAAAACACATTCCCTTTATTAGGATACATGACATTGATGCTTTAGTGTCGCAAGA
AAAGCTTTTCTTTCCATTGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAA
TACTCGTACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATA
CACGATACTGGTGCTTTGATTTCACAAGAAAGGCTTTTTTCCCACCAATTTTAGTAAAGTCTAAG
TTCGTGCCTCAAAAGAGACAAACATGGATTCTAGTAATGATCTTCTTTCATTTTATGAGTAGGCA
CTATAAACACATTCTCCTCA
Done.