Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold176
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 960511
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 25 characters in sequence are not A, C, G, or T
File 6 of 6
Found at i:865956 original size:13 final size:13
Alignment explanation
Indices: 865938--865964 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
865928 ACAAAGATCA
865938 AATGTATCGATAC
1 AATGTATCGATAC
865951 AATGTATCGATAC
1 AATGTATCGATAC
865964 A
1 A
865965 TTGAGTAATG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.41, C:0.15, G:0.15, T:0.30
Consensus pattern (13 bp):
AATGTATCGATAC
Found at i:866040 original size:19 final size:18
Alignment explanation
Indices: 866016--866078 Score: 64
Period size: 19 Copynumber: 3.7 Consensus size: 18
866006 AGTGATACAT
866016 TGTATCGATACAAAACTTA
1 TGTATCGATAC-AAACTTA
866035 TGTATCGATAC--A-TTA
1 TGTATCGATACAAACTTA
866050 --TATCGATACAACACTTA
1 TGTATCGATACAA-ACTTA
*
866067 TGCATCGATACA
1 TGTATCGATACA
866079 TTGTATCGAT
Statistics
Matches: 37, Mismatches: 1, Indels: 12
0.74 0.02 0.24
Matches are distributed among these distances:
13 9 0.24
15 3 0.08
16 2 0.05
17 3 0.08
19 20 0.54
ACGTcount: A:0.38, C:0.19, G:0.11, T:0.32
Consensus pattern (18 bp):
TGTATCGATACAAACTTA
Found at i:866054 original size:32 final size:32
Alignment explanation
Indices: 866009--866089 Score: 135
Period size: 32 Copynumber: 2.5 Consensus size: 32
865999 GCTTTGGAGT
*
866009 GATACATTGTATCGATACAAAACTTATGTATC
1 GATACATTGTATCGATACAAAACTTATGCATC
* *
866041 GATACATTATATCGATACAACACTTATGCATC
1 GATACATTGTATCGATACAAAACTTATGCATC
866073 GATACATTGTATCGATA
1 GATACATTGTATCGATA
866090 TAAATTGTTG
Statistics
Matches: 45, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
32 45 1.00
ACGTcount: A:0.37, C:0.17, G:0.12, T:0.33
Consensus pattern (32 bp):
GATACATTGTATCGATACAAAACTTATGCATC
Found at i:867391 original size:19 final size:19
Alignment explanation
Indices: 867367--867416 Score: 64
Period size: 20 Copynumber: 2.6 Consensus size: 19
867357 TGATACATTA
*
867367 TATCGAGACATTCTAAATG
1 TATCGATACATTCTAAATG
* *
867386 TATCGATACATTTTTCAATG
1 TATCGATACA-TTCTAAATG
867406 TATCGATACAT
1 TATCGATACAT
867417 CCAAGCATTT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
19 10 0.37
20 17 0.63
ACGTcount: A:0.34, C:0.16, G:0.12, T:0.38
Consensus pattern (19 bp):
TATCGATACATTCTAAATG
Found at i:882627 original size:37 final size:37
Alignment explanation
Indices: 882586--882666 Score: 153
Period size: 37 Copynumber: 2.2 Consensus size: 37
882576 TGCCACAATC
*
882586 ATGCATTTGTGACATTCATAACATTTCATTTTGCATG
1 ATGCATTTGTAACATTCATAACATTTCATTTTGCATG
882623 ATGCATTTGTAACATTCATAACATTTCATTTTGCATG
1 ATGCATTTGTAACATTCATAACATTTCATTTTGCATG
882660 ATGCATT
1 ATGCATT
882667 GGTGCTTCGT
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
37 43 1.00
ACGTcount: A:0.28, C:0.16, G:0.12, T:0.43
Consensus pattern (37 bp):
ATGCATTTGTAACATTCATAACATTTCATTTTGCATG
Found at i:883135 original size:28 final size:28
Alignment explanation
Indices: 883035--883477 Score: 526
Period size: 28 Copynumber: 15.7 Consensus size: 28
883025 CCTCACCTTC
*
883035 CAAAGCCCACAAGTCAGTGGCATCTTTT
1 CAAAGCCCACAAGTCAGTGGCACCTTTT
*
883063 GAAAAGCCCACAAGTCAGTGGCACCCTTTT
1 -CAAAGCCCACAAGTCAGTGGCA-CCTTTT
883093 CAAAAGCCCACAAGTCAGTGGCACCTTTT
1 C-AAAGCCCACAAGTCAGTGGCACCTTTT
*
883122 CAAAGCCCACAAGTCAGTGCCAACC-TTT
1 CAAAGCCCACAAGTCAGTGGC-ACCTTTT
*
883150 -AGAAGCCCACAAGTC-GATGGCACCCCTTT
1 CA-AAGCCCACAAGTCAG-TGGCA-CCTTTT
*
883179 CAAAGCCCACAAGTTAGTGGCACCTTTT
1 CAAAGCCCACAAGTCAGTGGCACCTTTT
* * *
883207 CAAAGCCCACAAGTTAGTGACATCTTTT
1 CAAAGCCCACAAGTCAGTGGCACCTTTT
*
883235 CAAAAGCCCACAAGTTAGTGGCACCTTTT
1 C-AAAGCCCACAAGTCAGTGGCACCTTTT
* *
883264 CAAAGTCCACAAGTTAGTGGCAACC-TTT
1 CAAAGCCCACAAGTCAGTGGC-ACCTTTT
*
883292 -AAAGCCCACAAGTTAGTGGCACCTTTT
1 CAAAGCCCACAAGTCAGTGGCACCTTTT
*
883319 CAAAGCCCACAAGTCAGTGGCATCTTTTT
1 CAAAGCCCACAAGTCAGTGGCA-CCTTTT
* *
883348 AAAAGCCCACAAGTTAGTGGCACCTTTT
1 CAAAGCCCACAAGTCAGTGGCACCTTTT
*
883376 CAAAGCTCACAAGTCAGTGGCAACC--TT
1 CAAAGCCCACAAGTCAGTGGC-ACCTTTT
*
883403 CAAAAGCCCACAAGTTAGTGGCACCTTTT
1 C-AAAGCCCACAAGTCAGTGGCACCTTTT
* *
883432 CAAAGTCCACAAGTCAATGGCAACC--TT
1 CAAAGCCCACAAGTCAGTGGC-ACCTTTT
*
883459 CAAAGCCCACAAGGCAGTG
1 CAAAGCCCACAAGTCAGTG
883478 TCAACCTTCA
Statistics
Matches: 366, Mismatches: 29, Indels: 40
0.84 0.07 0.09
Matches are distributed among these distances:
26 3 0.01
27 49 0.13
28 172 0.47
29 114 0.31
30 28 0.08
ACGTcount: A:0.31, C:0.29, G:0.18, T:0.22
Consensus pattern (28 bp):
CAAAGCCCACAAGTCAGTGGCACCTTTT
Found at i:883213 original size:57 final size:56
Alignment explanation
Indices: 883035--883471 Score: 555
Period size: 57 Copynumber: 7.7 Consensus size: 56
883025 CCTCACCTTC
* * * *
883035 CAAAGCCCACAAGTCAGTGGCATCTTTTGAAAAGCCCACAAGTCAGTGGCACCCTTTT
1 CAAAGCCCACAAGTCAGTGGCAACCTTT-CAAAGCCCACAAGTTAGTGGCA-CCTTTT
* *
883093 CAAAAGCCCACAAGTCAGTGGC-ACCTTTTCAAAGCCCACAAGTCAGTGCCAACC-TTT
1 C-AAAGCCCACAAGTCAGTGGCAACC-TTTCAAAGCCCACAAGTTAGTGGC-ACCTTTT
*
883150 -AGAAGCCCACAAGTC-GATGGCACCCCTTTCAAAGCCCACAAGTTAGTGGCACCTTTT
1 CA-AAGCCCACAAGTCAG-TGGCA-ACCTTTCAAAGCCCACAAGTTAGTGGCACCTTTT
* * * *
883207 CAAAGCCCACAAGTTAGTGACATCTTTTCAAAAGCCCACAAGTTAGTGGCACCTTTT
1 CAAAGCCCACAAGTCAGTGGCAACCTTTC-AAAGCCCACAAGTTAGTGGCACCTTTT
* *
883264 CAAAGTCCACAAGTTAGTGGCAACCTTT-AAAGCCCACAAGTTAGTGGCACCTTTT
1 CAAAGCCCACAAGTCAGTGGCAACCTTTCAAAGCCCACAAGTTAGTGGCACCTTTT
* * *
883319 CAAAGCCCACAAGTCAGTGGCATCTTTTTAAAAGCCCACAAGTTAGTGGCACCTTTT
1 CAAAGCCCACAAGTCAGTGGCAAC-CTTTCAAAGCCCACAAGTTAGTGGCACCTTTT
*
883376 CAAAGCTCACAAGTCAGTGGCAACC-TTCAAAAGCCCACAAGTTAGTGGCACCTTTT
1 CAAAGCCCACAAGTCAGTGGCAACCTTTC-AAAGCCCACAAGTTAGTGGCACCTTTT
* *
883432 CAAAGTCCACAAGTCAATGGCAACC-TTCAAAGCCCACAAG
1 CAAAGCCCACAAGTCAGTGGCAACCTTTCAAAGCCCACAAG
883472 GCAGTGTCAA
Statistics
Matches: 339, Mismatches: 26, Indels: 31
0.86 0.07 0.08
Matches are distributed among these distances:
55 64 0.19
56 80 0.24
57 144 0.42
58 27 0.08
59 24 0.07
ACGTcount: A:0.31, C:0.29, G:0.17, T:0.22
Consensus pattern (56 bp):
CAAAGCCCACAAGTCAGTGGCAACCTTTCAAAGCCCACAAGTTAGTGGCACCTTTT
Found at i:883645 original size:49 final size:49
Alignment explanation
Indices: 883543--883865 Score: 343
Period size: 49 Copynumber: 6.6 Consensus size: 49
883533 GGTGGCATCT
* * * *
883543 TCTTCTAAGTCCAATATCGCTGGCCTTGAATTAGCATATTGGCA----C-
1 TCTT-TAAGTCCAATGTTGCTGGCCTTGAATCAGCACATTGGCACCTTCA
* *
883588 -CTTTAAGTCTAATGTTGCTGGCCTTGAATCAGCACATTGGCACCTACA
1 TCTTTAAGTCCAATGTTGCTGGCCTTGAATCAGCACATTGGCACCTTCA
* * * * *
883636 TCTTTAAGTCCAATATTGTTGGCCTTAAATCAACATATTGGCACCTTTGTCA
1 TCTTTAAGTCCAATGTTGCTGGCCTTGAATCAGCACATTGGCACC--T-TCA
* ** *
883688 TCTTTAAATTTAATGTTGCTGGCCTTGAATCAGCACATTGGCATCTTCA
1 TCTTTAAGTCCAATGTTGCTGGCCTTGAATCAGCACATTGGCACCTTCA
* * *
883737 TCTTTAAGTCCAATGTCGCTGGCCTTCAATCAGCACATTAGCACCTTCA
1 TCTTTAAGTCCAATGTTGCTGGCCTTGAATCAGCACATTGGCACCTTCA
* * *
883786 CCTTTAAGTCCAATGTTGCTGGCCTTGAATCATCACATTAGCACCTTCA
1 TCTTTAAGTCCAATGTTGCTGGCCTTGAATCAGCACATTGGCACCTTCA
* * **
883835 CCTTTAAGTCCAGTGTTGCAAGCCTTGAATC
1 TCTTTAAGTCCAATGTTGCTGGCCTTGAATC
883866 TACACACTGG
Statistics
Matches: 234, Mismatches: 35, Indels: 14
0.83 0.12 0.05
Matches are distributed among these distances:
43 34 0.15
44 3 0.01
47 1 0.00
49 156 0.67
50 1 0.00
51 1 0.00
52 38 0.16
ACGTcount: A:0.25, C:0.25, G:0.16, T:0.34
Consensus pattern (49 bp):
TCTTTAAGTCCAATGTTGCTGGCCTTGAATCAGCACATTGGCACCTTCA
Found at i:883768 original size:101 final size:98
Alignment explanation
Indices: 883585--883846 Score: 353
Period size: 101 Copynumber: 2.6 Consensus size: 98
883575 AGCATATTGG
*
883585 CACCTTTAAGTCTAATGTTGCTGGCCTTGAATCAGCACATTGGCACCTACATCTTTAAGTCCAAT
1 CACCTTTAAGTCTAATGTTGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCCAAT
* * * *
883650 ATTGTTGGCCTTAAATCAACATATTGGCACCTTTGT
66 ATCGCTGGCCTTAAATCAACACATTAGCACC--T-T
* * * *
883686 CATCTTTAAATTTAATGTTGCTGGCCTTGAATCAGCACATTGGCATCTTCATCTTTAAGTCCAAT
1 CACCTTTAAGTCTAATGTTGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCCAAT
* * *
883751 GTCGCTGGCCTTCAATCAGCACATTAGCACCTT
66 ATCGCTGGCCTTAAATCAACACATTAGCACCTT
* * * *
883784 CACCTTTAAGTCCAATGTTGCTGGCCTTGAATCATCACATTAGCACCTTCACCTTTAAGTCCA
1 CACCTTTAAGTCTAATGTTGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCCA
883847 GTGTTGCAAG
Statistics
Matches: 141, Mismatches: 20, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
98 56 0.40
99 1 0.01
101 84 0.60
ACGTcount: A:0.25, C:0.26, G:0.15, T:0.34
Consensus pattern (98 bp):
CACCTTTAAGTCTAATGTTGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCCAAT
ATCGCTGGCCTTAAATCAACACATTAGCACCTT
Found at i:889102 original size:79 final size:79
Alignment explanation
Indices: 889019--889693 Score: 682
Period size: 79 Copynumber: 8.5 Consensus size: 79
889009 ATTCATGTTC
* * * *
889019 TTATTTCCGAGGGGATACTCCAACCTCGGTTTTATTTCCAAAACATCAATTTTTCATAATCTAGG
1 TTATTTTCGAGGGGATACTCCAACCCCAGTTTTATTTCCAAAACATCAATTTTTCATAATCGAGG
* *
889084 ATACTCCAAGCCCG
66 ATACTCCAACCCCA
* * * *
889098 TTATTTCCGAGGGGATGCTCCAACCCCAGTTTTATTTCCAAAACACCAATTTTTCATAATCGACG
1 TTATTTTCGAGGGGATACTCCAACCCCAGTTTTATTTCCAAAACATCAATTTTTCATAATCGAGG
* *
889163 ATACTCCAAGCCTA
66 ATACTCCAACCCCA
* * *
889177 TTATTTTCGAGGGGATACTTCAACCCCAATTTTATTTCCAAAACA-CTAATTTTTCATAAT-TAG
1 TTATTTTCGAGGGGATACTCCAACCCCAGTTTTATTTCCAAAACATC-AATTTTTCATAATCGA-
* * *
889240 GGATACTTCAACCTCG
64 GGATACTCCAACCCCA
** * * * * * *
889256 TTATTTTTTAAGGGATACTCTAACCCCGGTTTTATTTCCAACACA-CTAATTTTTCACAATCGGG
1 TTATTTTCGAGGGGATACTCCAACCCCAGTTTTATTTCCAAAACATC-AATTTTTCATAATCGAG
889320 GATACTCCAACCCCA
65 GATACTCCAACCCCA
* *
889335 TTATTTTCGAGGGGATACTCTAACCCCAGTTTTATTTCCAAAACATCAATTTTTCACAATCG-GG
1 TTATTTTCGAGGGGATACTCCAACCCCAGTTTTATTTCCAAAACATCAATTTTTCATAATCGAGG
889399 AATACTCCAACCCCA
66 -ATACTCCAACCCCA
* * * *
889414 TTATTTTCGAGAGGATACTCCAATCCTAGTTTTATTTCCAAAACATCAATTTTTCACAATCG-GG
1 TTATTTTCGAGGGGATACTCCAACCCCAGTTTTATTTCCAAAACATCAATTTTTCATAATCGAGG
889478 AATACTCCAACCCCA
66 -ATACTCCAACCCCA
* * * * * * * * *
889493 TTATTTTCGAGGGGATACTCTAATCCTAATTTTATTTCTAAAATACCGATTTTCCATAATCGAGG
1 TTATTTTCGAGGGGATACTCCAACCCCAGTTTTATTTCCAAAACATCAATTTTTCATAATCGAGG
* *
889558 ATACTCCAACTCTA
66 ATACTCCAACCCCA
* * * * * ** * *
889572 TTATTTTTGAAGGGATACTCCAACCTC-GATTTTATTTCCAGAACA-CTGATTTCCCACAATTGA
1 TTATTTTCGAGGGGATACTCCAACCCCAG-TTTTATTTCCAAAACATC-AATTTTTCATAATCGA
* * *
889635 GGATACTCTAGCCCTA
64 GGATACTCCAACCCCA
* ** * *
889651 TTATTTTTGAAAGAATACTCCAACCCC-GTCTTTATCTCCAAAA
1 TTATTTTCGAGGGGATACTCCAACCCCAGT-TTTATTTCCAAAA
889694 TATTAAAATT
Statistics
Matches: 513, Mismatches: 74, Indels: 18
0.85 0.12 0.03
Matches are distributed among these distances:
78 6 0.01
79 504 0.98
80 3 0.01
ACGTcount: A:0.30, C:0.25, G:0.12, T:0.34
Consensus pattern (79 bp):
TTATTTTCGAGGGGATACTCCAACCCCAGTTTTATTTCCAAAACATCAATTTTTCATAATCGAGG
ATACTCCAACCCCA
Found at i:901924 original size:50 final size:50
Alignment explanation
Indices: 901849--901951 Score: 197
Period size: 50 Copynumber: 2.1 Consensus size: 50
901839 TCCCAATCCA
*
901849 TAAGGATGCTCAAGGAAAATGGACTCTAAATTGGGAAGGGCCATATGTAG
1 TAAGGATGCTCAAGGAAAATGGACTCTAAATTGGGAAAGGCCATATGTAG
901899 TAAGGATGCTCAAGGAAAATGGACTCTAAATTGGGAAAGGCCATATGTAG
1 TAAGGATGCTCAAGGAAAATGGACTCTAAATTGGGAAAGGCCATATGTAG
901949 TAA
1 TAA
901952 AGCGTGTTTT
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
50 52 1.00
ACGTcount: A:0.38, C:0.12, G:0.28, T:0.22
Consensus pattern (50 bp):
TAAGGATGCTCAAGGAAAATGGACTCTAAATTGGGAAAGGCCATATGTAG
Found at i:902150 original size:17 final size:16
Alignment explanation
Indices: 902104--902152 Score: 53
Period size: 17 Copynumber: 2.9 Consensus size: 16
902094 CCTTTTTCTA
*
902104 AACAAAAAAAAAAAAC
1 AACAAAAAACAAAAAC
**
902120 AACAGAAACCCAAAAAC
1 AACA-AAAAACAAAAAC
902137 AACAAAAAAGCAAAAA
1 AACAAAAAA-CAAAAA
902153 AAAAAACAAA
Statistics
Matches: 26, Mismatches: 5, Indels: 3
0.76 0.15 0.09
Matches are distributed among these distances:
16 7 0.27
17 19 0.73
ACGTcount: A:0.78, C:0.18, G:0.04, T:0.00
Consensus pattern (16 bp):
AACAAAAAACAAAAAC
Found at i:902180 original size:16 final size:16
Alignment explanation
Indices: 902140--902189 Score: 61
Period size: 16 Copynumber: 3.2 Consensus size: 16
902130 CAAAAACAAC
902140 AAAAAAGCAAAAAA-A-
1 AAAAAAG-AAAAAAGAG
*
902155 AAAACA-AAAAAAGAG
1 AAAAAAGAAAAAAGAG
902170 AAAAAAGAAAAAAGAG
1 AAAAAAGAAAAAAGAG
902186 AAAA
1 AAAA
902190 GAAAAGAACC
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
13 6 0.20
14 1 0.03
15 10 0.33
16 13 0.43
ACGTcount: A:0.84, C:0.04, G:0.12, T:0.00
Consensus pattern (16 bp):
AAAAAAGAAAAAAGAG
Found at i:902183 original size:7 final size:7
Alignment explanation
Indices: 902140--902194 Score: 58
Period size: 7 Copynumber: 7.6 Consensus size: 7
902130 CAAAAACAAC
902140 AAAAAAG
1 AAAAAAG
902147 CAAAAAA-
1 -AAAAAAG
*
902154 AAAAACAA
1 AAAAA-AG
902162 AAAAAGAG
1 AAAAA-AG
902170 AAAAAAG
1 AAAAAAG
902177 AAAAAAG
1 AAAAAAG
*
902184 AGAAAAG
1 AAAAAAG
902191 AAAA
1 AAAA
902195 GAACCTTCTT
Statistics
Matches: 41, Mismatches: 4, Indels: 5
0.82 0.08 0.10
Matches are distributed among these distances:
6 5 0.12
7 19 0.46
8 17 0.41
ACGTcount: A:0.84, C:0.04, G:0.13, T:0.00
Consensus pattern (7 bp):
AAAAAAG
Found at i:903438 original size:59 final size:59
Alignment explanation
Indices: 903165--903691 Score: 600
Period size: 59 Copynumber: 9.0 Consensus size: 59
903155 CAAGATGCCC
*
903165 TTTCCATTTCAAAGCCCACACAAGTTGGTGGCACCTT-TCAGTCCTCAAAGAGCAGGACGCCT
1 TTTCC-TTTCAAAGCCCACACAAGTTGGTGGCACCTTCT-AGTCCTCAAAGAGCAGGA--CAT
* * *
903227 TCTCCTTTTAAAGCCCACACAAGTTGGTGGCACCTT-TCAGTCCTTCAAAAAG-AGGACACCT
1 TTTCCTTTCAAAGCCCACACAAGTTGGTGGCACCTTCT-AGTCC-TCAAAGAGCAGGACA--T
* * *
903288 TTT-CTTATTAAAGCCCACACAAGTTGGTGGCACCTATC-AGTCTTTAAAGAGCAGGACACCT
1 TTTCCTT-TCAAAGCCCACACAAGTTGGTGGCACCT-TCTAGTCCTCAAAGAGCAGGACA--T
* *
903349 TTTCCTTTCAAAGCCTACACAAGTTGGTGGCACCTTCTAGTCCTCAAAGAGGAGGACAT
1 TTTCCTTTCAAAGCCCACACAAGTTGGTGGCACCTTCTAGTCCTCAAAGAGCAGGACAT
* *
903408 TTTCCTTTCAAAGCCCACACAAGTTGGTGGCACCTTCTAGTCCTTAAAGAGCAGGACGT
1 TTTCCTTTCAAAGCCCACACAAGTTGGTGGCACCTTCTAGTCCTCAAAGAGCAGGACAT
* * * * *
903467 TTTCCTTTCAAAGCCCACACTAGTTGGTGGCACCTCCTTGTCCTCAAAGAGAAGGATAT
1 TTTCCTTTCAAAGCCCACACAAGTTGGTGGCACCTTCTAGTCCTCAAAGAGCAGGACAT
* * * ***
903526 TTTCCTTTCAAAGCCCATACAAGTTGGTGGCACCTTCCAGTCCTCAAAGAGTAGGATGC
1 TTTCCTTTCAAAGCCCACACAAGTTGGTGGCACCTTCTAGTCCTCAAAGAGCAGGACAT
*
903585 TTTCCTTTCAAAGCCTACACAAGTTGGTGGCACCTT-TCAGTCCTC-AA-AG-A-G----
1 TTTCCTTTCAAAGCCCACACAAGTTGGTGGCACCTTCT-AGTCCTCAAAGAGCAGGACAT
*
903636 -TTCCTTTCAAAGCCCACACAAGTTGGTGGCACCTTCTAGT-CTCCAAGGAGCAGGAC
1 TTTCCTTTCAAAGCCCACACAAGTTGGTGGCACCTTCTAGTCCT-CAAAGAGCAGGAC
903692 GTGCTTTAAT
Statistics
Matches: 410, Mismatches: 37, Indels: 42
0.84 0.08 0.09
Matches are distributed among these distances:
49 2 0.00
50 38 0.09
51 2 0.00
52 2 0.00
53 1 0.00
54 1 0.00
55 1 0.00
56 1 0.00
57 2 0.00
58 2 0.00
59 201 0.49
60 11 0.03
61 131 0.32
62 15 0.04
ACGTcount: A:0.26, C:0.28, G:0.19, T:0.27
Consensus pattern (59 bp):
TTTCCTTTCAAAGCCCACACAAGTTGGTGGCACCTTCTAGTCCTCAAAGAGCAGGACAT
Found at i:903801 original size:77 final size:75
Alignment explanation
Indices: 903708--903888 Score: 195
Period size: 75 Copynumber: 2.4 Consensus size: 75
903698 TAATTGCCTT
* **
903708 CTTTTCCTTTGTCCTCAAAGAGCAGGACGC-ATTTTATTTCCTTTTTTCCTTTATCCTCAAAGAG
1 CTTTTCCTTTGTCCTCAAAGAGCAGGACGCAATTTCA-TT-CTCGTTTCCTTTATCCTCAAAGAG
* * *
903772 TAGGATGTACTC
64 CAAGACGTACTC
* * * * *
903784 CTTCTTCCTTTGTCCTCAAGGAGCAAGAC-CAATTTCATTCTCGTTTCTTTTGTCCTCGAAGAGC
1 CTT-TTCCTTTGTCCTCAAAGAGCAGGACGCAATTTCATTCTCGTTTCCTTTATCCTCAAAGAGC
*
903848 AAGACGTGCTC
65 AAGACGTACTC
* *
903859 CTTTTCATTTGTCCTTAAAGAGCAGGACGC
1 CTTTTCCTTTGTCCTCAAAGAGCAGGACGC
903889 CCCTTCCTTT
Statistics
Matches: 86, Mismatches: 16, Indels: 7
0.79 0.15 0.06
Matches are distributed among these distances:
74 21 0.24
75 31 0.36
76 6 0.07
77 28 0.33
ACGTcount: A:0.21, C:0.25, G:0.17, T:0.37
Consensus pattern (75 bp):
CTTTTCCTTTGTCCTCAAAGAGCAGGACGCAATTTCATTCTCGTTTCCTTTATCCTCAAAGAGCA
AGACGTACTC
Found at i:904469 original size:20 final size:20
Alignment explanation
Indices: 904444--904526 Score: 89
Period size: 20 Copynumber: 4.2 Consensus size: 20
904434 TCATAATTTA
904444 TATCGATACATTATTAATTG
1 TATCGATACATTATTAATTG
* *
904464 TATCGATACATCATTCATTG
1 TATCGATACATTATTAATTG
* *
904484 TATTGATACATT-CTAGA-TG
1 TATCGATACATTATTA-ATTG
* *
904503 TATCGATACATTTTTAAATG
1 TATCGATACATTATTAATTG
904523 TATC
1 TATC
904527 AACATATCCA
Statistics
Matches: 52, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
19 15 0.29
20 37 0.71
ACGTcount: A:0.33, C:0.13, G:0.11, T:0.43
Consensus pattern (20 bp):
TATCGATACATTATTAATTG
Found at i:906953 original size:79 final size:77
Alignment explanation
Indices: 906822--907057 Score: 332
Period size: 79 Copynumber: 3.0 Consensus size: 77
906812 ATTCAAGTTT
*
906822 TTATTTCCGAA-GGGATACTCCAACCCCAGTTTTATTTCCAAAACACCAATTTTTCACAATCGGG
1 TTATTTCC-AACGGGATACTCCAA-CCCAGTTTTATTTCCAAAACACCAATTTTTCATAATCGGG
906886 GATACTCCAATCCCG
64 GATACTCCAA-CCCG
** * * *
906901 TTATTTTTAAGGGGATACTCCAACCTCAGTTTTATTTCCAAAACACTC-ATTTTTCATAATCAGA
1 TTATTTCCAACGGGATACTCCAACC-CAGTTTTATTTCCAAAACAC-CAATTTTTCATAATCGGG
906965 GATACTCCAACCTCG
64 GATACTCCAACC-CG
*
906980 TTATTTCCAACGGGATACTCCGACCCTAGTTTTATTTCCAAAACACCAATTTTTCATAATCGGGG
1 TTATTTCCAACGGGATACTCCAACCC-AGTTTTATTTCCAAAACACCAATTTTTCATAATCGGGG
907045 ATACTCCAACCCG
65 ATACTCCAACCCG
907058 GTTTTATTTC
Statistics
Matches: 140, Mismatches: 11, Indels: 13
0.85 0.07 0.08
Matches are distributed among these distances:
78 10 0.07
79 129 0.92
80 1 0.01
ACGTcount: A:0.29, C:0.27, G:0.12, T:0.32
Consensus pattern (77 bp):
TTATTTCCAACGGGATACTCCAACCCAGTTTTATTTCCAAAACACCAATTTTTCATAATCGGGGA
TACTCCAACCCG
Found at i:907067 original size:50 final size:51
Alignment explanation
Indices: 906991--907108 Score: 157
Period size: 50 Copynumber: 2.3 Consensus size: 51
906981 TATTTCCAAC
* *
906991 GGGATACTCCGACCCTAGTTTTATTTCCAAAACACCAATTTTTCATAATCG
1 GGGATACTCCAACCCTAGTTTTATTTCCAAAACACCAATTTTTCACAATCG
* * *
907042 GGGATACTCCAACCC-GGTTTTATTTCCAAAACATCAATTTTTCACAATCA
1 GGGATACTCCAACCCTAGTTTTATTTCCAAAACACCAATTTTTCACAATCG
* * *
907092 AGGATGCTCCAATCCTA
1 GGGATACTCCAACCCTA
907109 TTATTTTCAA
Statistics
Matches: 57, Mismatches: 9, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
50 43 0.75
51 14 0.25
ACGTcount: A:0.31, C:0.26, G:0.12, T:0.31
Consensus pattern (51 bp):
GGGATACTCCAACCCTAGTTTTATTTCCAAAACACCAATTTTTCACAATCG
Found at i:907091 original size:129 final size:130
Alignment explanation
Indices: 906911--907182 Score: 392
Period size: 129 Copynumber: 2.1 Consensus size: 130
906901 TTATTTTTAA
*
906911 GGGGATACTCCAACCTCAGTTTTATTTCCAAAACACTCATTTTTCATAATC-AGAGATACTCCAA
1 GGGGATACTCCAACCTCAGTTTTATTTCCAAAACACTCATTTTTCACAATCAAG-GATACTCCAA
* *
906975 -CCTCGTTATTTCCAACGGGATACTCCGACCCTAGTTTTATTTCCAAAACACCAATTTTTCA-TA
65 TCCT-ATTATTTCCAACGGGATACTCCAACCCTAGTTTTATTTCCAAAACACCAATTTTTCACT-
907038 ATC
128 ATC
* *
907041 GGGGATACTCCAACC-CGGTTTTATTTCCAAAACA-TCAATTTTTCACAATCAAGGATGCTCCAA
1 GGGGATACTCCAACCTCAGTTTTATTTCCAAAACACTC-ATTTTTCACAATCAAGGATACTCCAA
* * *
907104 TCCTATTATTTTCAAGGGGATACTCCAACCCTAGTTTTATTTCCAAAACATCAATTTTTCACTAT
65 TCCTATTATTTCCAACGGGATACTCCAACCCTAGTTTTATTTCCAAAACACCAATTTTTCACTAT
907169 C
130 C
*
907170 GAGGATACTCCAA
1 GGGGATACTCCAA
907183 TCCTGTTATT
Statistics
Matches: 129, Mismatches: 9, Indels: 9
0.88 0.06 0.06
Matches are distributed among these distances:
128 2 0.02
129 106 0.82
130 21 0.16
ACGTcount: A:0.31, C:0.26, G:0.11, T:0.33
Consensus pattern (130 bp):
GGGGATACTCCAACCTCAGTTTTATTTCCAAAACACTCATTTTTCACAATCAAGGATACTCCAAT
CCTATTATTTCCAACGGGATACTCCAACCCTAGTTTTATTTCCAAAACACCAATTTTTCACTATC
Found at i:907223 original size:208 final size:209
Alignment explanation
Indices: 906833--907257 Score: 578
Period size: 208 Copynumber: 2.0 Consensus size: 209
906823 TATTTCCGAA
**
906833 GGGATACTCCAACCCCAGTTTTATTTCCAAAACACCAATTTTTCACAATCGGGGATACTCCAATC
1 GGGATACTCCAACCCCAGTTTTATTTCCAAAACACCAATTTTTCACAATCAAGGATACTCCAATC
* *
906898 CCGTTATTTTTAAGGGGATACTCCAACCTCAGTTTTATTTCCAAAACACTCATTTTTCATAATCA
66 CCATTATTTTCAAGGGGATACTCCAACCTCAGTTTTATTTCCAAAACACTCATTTTTCATAATCA
* *
906963 GAGATACTCCAACCTCGTTATTTCCAACGGGATACTCCGACCCTAGTTTTATTTCCAAAACACCA
131 GAGATACTCCAACCTCGTTATTTCCAACGGGATACTCCAACCCTAGTTTTATTTCAAAAACACCA
*
907028 ATTTTTCATAATCG
196 ATTTTCCATAATCG
* * *
907042 GGGATACTCCAA-CCCGGTTTTATTTCCAAAACATCAATTTTTCACAATCAAGGATGCTCCAATC
1 GGGATACTCCAACCCCAGTTTTATTTCCAAAACACCAATTTTTCACAATCAAGGATACTCCAATC
*
907106 CTATTATTTTCAAGGGGATACTCCAACC-CTAGTTTTATTTCCAAAACA-TCAATTTTTCACT-A
66 CCATTATTTTCAAGGGGATACTCCAACCTC-AGTTTTATTTCCAAAACACTC-ATTTTTCA-TAA
** *
907168 TC-GAGGATACTCCAATCCT-GTTATTTTTGAA-GGGATACTCTAACCCT-GATTTTATTTCAAA
128 TCAGA-GATACTCCAA-CCTCGTTA-TTTCCAACGGGATACTCCAACCCTAG-TTTTATTTCAAA
* * *
907229 AATATCGATTTTCCATAATCG
189 AACACCAATTTTCCATAATCG
907250 GGGATACT
1 GGGATACT
907258 TCGACCCTAT
Statistics
Matches: 192, Mismatches: 17, Indels: 15
0.86 0.08 0.07
Matches are distributed among these distances:
207 6 0.03
208 165 0.86
209 21 0.11
ACGTcount: A:0.30, C:0.24, G:0.12, T:0.34
Consensus pattern (209 bp):
GGGATACTCCAACCCCAGTTTTATTTCCAAAACACCAATTTTTCACAATCAAGGATACTCCAATC
CCATTATTTTCAAGGGGATACTCCAACCTCAGTTTTATTTCCAAAACACTCATTTTTCATAATCA
GAGATACTCCAACCTCGTTATTTCCAACGGGATACTCCAACCCTAGTTTTATTTCAAAAACACCA
ATTTTCCATAATCG
Found at i:907287 original size:158 final size:157
Alignment explanation
Indices: 907042--907373 Score: 405
Period size: 158 Copynumber: 2.1 Consensus size: 157
907032 TTCATAATCG
* * * * * *
907042 GGGATACTCCAACCCGGTTTTATTTCCAAAACATCAATTTTTCACAATCAAGGATGCTCCAATCC
1 GGGATACTCTAACCCGATTTTATTTCAAAAACATCAATTTTCCACAATCAAGGATACTCCAACCC
* * *
907107 TATTATTTTCAAGGGGATACTCCAACCCTAGTTTTATTTCCAAAACATCAATTTTTCACTATCGA
66 TATTATTTTCAAGGGGATACTCCAACCCCAATTTTATTTCCAAAACATCAATTTTTCACAATCGA
* *
907172 GGATACTCCAATCCTGTTATTTTTGAA
131 GGATACTCCAACCCCGTTATTTTTGAA
* * * ** * *
907199 GGGATACTCTAACCCTGATTTTATTTCAAAAATATCGATTTTCCATAATCGGGGATACTTCGACC
1 GGGATACTCTAACCC-GATTTTATTTCAAAAACATCAATTTTCCACAATCAAGGATACTCCAACC
** * * *
907264 CTATTATTTTCGAA-GGGATACTCCAACCCCAATTTTATTTTTAGAACATCGATTTTTCACAATT
65 CTATTATTTTC-AAGGGGATACTCCAACCCCAATTTTATTTCCAAAACATCAATTTTTCACAATC
*
907328 GGGGATACTCCAACCCCGTTATTTTTGAA
129 GAGGATACTCCAACCCCGTTATTTTTGAA
*
907357 AGGATACTCTAAGCCCG
1 GGGATACTCTAA-CCCG
907374 TCTTTATCTC
Statistics
Matches: 147, Mismatches: 25, Indels: 5
0.83 0.14 0.03
Matches are distributed among these distances:
157 14 0.10
158 128 0.87
159 5 0.03
ACGTcount: A:0.29, C:0.23, G:0.13, T:0.35
Consensus pattern (157 bp):
GGGATACTCTAACCCGATTTTATTTCAAAAACATCAATTTTCCACAATCAAGGATACTCCAACCC
TATTATTTTCAAGGGGATACTCCAACCCCAATTTTATTTCCAAAACATCAATTTTTCACAATCGA
GGATACTCCAACCCCGTTATTTTTGAA
Found at i:907350 original size:79 final size:79
Alignment explanation
Indices: 907042--907422 Score: 338
Period size: 79 Copynumber: 4.8 Consensus size: 79
907032 TTCATAATCG
** * * *
907042 GGGATACTCCAA-CCCGGTTTTATTTCCAAAACATCAATTTTTCACAATCAAGGATGCTCCAATC
1 GGGATACTCCAACCCCAATTTTATTTCCAAAACATCAATTTTTCACAATCGAGGATACTCCAACC
907106 CTATTATTTTC-AA
66 CTATTATTTTCGAA
* * * *
907119 GGGGATACTCCAACCCTAGTTTTATTTCCAAAACATCAATTTTTCACTATCGAGGATACTCCAAT
1 -GGGATACTCCAACCCCAATTTTATTTCCAAAACATCAATTTTTCACAATCGAGGATACTCCAAC
* *
907184 CCTGTTATTTTTGAA
65 CCTATTATTTTCGAA
* ** * * * * * * * *
907199 GGGATACTCTAACCCTGATTTTATTTCAAAAATATCGATTTTCCATAATCGGGGATACTTCGACC
1 GGGATACTCCAACCCCAATTTTATTTCCAAAACATCAATTTTTCACAATCGAGGATACTCCAACC
907264 CTATTATTTTCGAA
66 CTATTATTTTCGAA
** * * * *
907278 GGGATACTCCAACCCCAATTTTATTTTTAGAACATCGATTTTTCACAATTGGGGATACTCCAACC
1 GGGATACTCCAACCCCAATTTTATTTCCAAAACATCAATTTTTCACAATCGAGGATACTCCAACC
** *
907343 CCGTTATTTTTGAA
66 CTATTATTTTCGAA
* * * * * * * * *
907357 AGGATACTCTAAGCCC-GTCTTTATCTCCAAAATATTAAAATTTTCATCAA-CGAGTATACTCCA
1 GGGATACTCCAACCCCAAT-TTTATTTCCAAAACA-TCAATTTTTCA-CAATCGAGGATACTCCA
907420 ACC
63 ACC
907423 GCGTACCCCG
Statistics
Matches: 246, Mismatches: 52, Indels: 8
0.80 0.17 0.03
Matches are distributed among these distances:
78 13 0.05
79 207 0.84
80 23 0.09
81 3 0.01
ACGTcount: A:0.30, C:0.23, G:0.12, T:0.35
Consensus pattern (79 bp):
GGGATACTCCAACCCCAATTTTATTTCCAAAACATCAATTTTTCACAATCGAGGATACTCCAACC
CTATTATTTTCGAA
Found at i:909253 original size:218 final size:218
Alignment explanation
Indices: 908875--909305 Score: 646
Period size: 218 Copynumber: 2.0 Consensus size: 218
908865 ACACGAATAT
**
908875 TAGTAATAATCTTCTTTCATTTCATGAGTAGGCATTATAAACACATTATCCTTATTAAGGTAAAT
1 TAGTAATAATCTTCTTTCATTTCATGAGTAGGCACGATAAACACATTATCCTTATTAAGGTAAAT
* *
908940 GATATTGATGATTTTCTTTTGCAAGGAAATCTTTTCTTTGCCCTATTTTCATTAAAATCAAAGTT
66 GATATTGATCATTTTCTTTTGCAAGGAAATCTTTTCTTTACCCTATTTTCATTAAAATCAAAGTT
* * * **
909005 CATCCCTTAGAGAAGACAAGCATCGATTCTCGTAATAGTCTCCATTCTTTTCATGGTTGGGAACC
131 CATCCCTTAAAGAAGACAAGCATCGATTCTCATAACAGTCTCCATTCTTTTCAAAGTTGGGAACC
*
909070 AAAAGCACATTCCCTTTACTTTC
196 AAAAACACATTCCCTTTACTTTC
* * * * * * **
909093 TAGTAATGATCTTTTTTCATTTTATGTGTAGGCACGATAAACACATTCTCCTTTTTCGGGTAAAT
1 TAGTAATAATCTTCTTTCATTTCATGAGTAGGCACGATAAACACATTATCCTTATTAAGGTAAAT
* * *
909158 GATATTGATCATTTTTTTTTGCATGGAAATCTTTTCTTTACCCTATTTTCCTTAAAATCAAAGTT
66 GATATTGATCATTTTCTTTTGCAAGGAAATCTTTTCTTTACCCTATTTTCATTAAAATCAAAGTT
* *
909223 CATCCCTTAAATAAGAGAAGCATCGATTCTCATAACAGTCTCCATTCTTTTCAAAGTTGGGAACC
131 CATCCCTTAAAGAAGACAAGCATCGATTCTCATAACAGTCTCCATTCTTTTCAAAGTTGGGAACC
*
909288 AAAAACACATTCCTTTTA
196 AAAAACACATTCCCTTTA
909306 TAGGATACAT
Statistics
Matches: 189, Mismatches: 24, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
218 189 1.00
ACGTcount: A:0.30, C:0.19, G:0.12, T:0.39
Consensus pattern (218 bp):
TAGTAATAATCTTCTTTCATTTCATGAGTAGGCACGATAAACACATTATCCTTATTAAGGTAAAT
GATATTGATCATTTTCTTTTGCAAGGAAATCTTTTCTTTACCCTATTTTCATTAAAATCAAAGTT
CATCCCTTAAAGAAGACAAGCATCGATTCTCATAACAGTCTCCATTCTTTTCAAAGTTGGGAACC
AAAAACACATTCCCTTTACTTTC
Found at i:910110 original size:476 final size:475
Alignment explanation
Indices: 909090--912854 Score: 4393
Period size: 476 Copynumber: 7.9 Consensus size: 475
909080 TCCCTTTACT
* * * * * *
909090 TTCTAGTAATGATCTTTTTTCATTTTATGTGTAGGCACGATAAACACATTCTCCTTTTTCGGGTA
1 TTCTAGTAATGATCTTCTTTCATTTTATGAGTAGGCA-TATAAACACATTCTCCTCTTTAGGATA
* *
909155 AATGATATTGATCATTTTTTTTTGCATGGAAATCTTTTCTTT-ACCCTATTTTCCTTAAAATCAA
65 AATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGA-CCTATTTTCCTTAAAATCAA
*
909219 AGTTCATCCCTTAAATAAGAGAAGCATCGATTCTCATAACAGTCTCCATTCTTTTCAAAGTTGGG
129 AGTTCATCCCTTAAATAAGACAAGCATCGATTCTCATAACAGTCTCCATTCTTTTCAAAGTTGGG
* * *
909284 AACCAAAAACACATTCCTTTTA-TAGGATACATGACATTGATGCTTTAGGGTCGCCAA-AAAAGC
194 AACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTAGTGTCG-CAAGAAAAGC
* * * * * * * * *
909347 TTTT-TTTTCTCTCGTTTTTCATAGAATTAAAGTTTGTC-CATAAAATAAGACAAACTTTAACAC
258 TTTTCTTTCCACTTGTTTTTGATAGAATCAAAGTTTGTCTC-TTAAATAAGACAAACATGAATAC
* * *
909410 TCGTACTAATCCCTATTCTTTTTAGGATTAGGCACCATAAACATAGTCTTCTCATTAGAATAGAC
322 TCGTACTAATCCCCATTC-TTTTAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACAC
* * * * * * * * *
909475 GATATTGGAGCTTTGGTTTTGCAAGAAATGCTTTTTTCCCATCAATTTTATTAAAGTCAAAGTTT
386 GATACTGGTGCTTTGATTTCGCAAGAAAGGCTTTTTTCCCACCAATTTTAGTAAAGTCTAAGTTC
* * *
909540 GAGTCTCAAAAGAGACAAATATGGA
451 GTGCCTCAAAAGAGACAAACATGGA
* * * * * * *
909565 TTCTAGTAATGATCTTTTTTCATTTTATGTGTAGGCACGATAAACACATTCTTCTTTTTCGGGTA
1 TTCTAGTAATGATCTTCTTTCATTTTATGAGTAGGCA-TATAAACACATTCTCCTCTTTAGGATA
*
909630 AATGATATTGATCATTTTCTTTTGCATGGAAATCTTTTCTTTGACCTATTTTCCTTAAAATCAAA
65 AATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGACCTATTTTCCTTAAAATCAAA
*
909695 GTTCATCCCTTAAATAAGAGAAGCATCGATTCTCATAACAGTCTCCATTCTTTTCAAAGTTGGGA
130 GTTCATCCCTTAAATAAGACAAGCATCGATTCTCATAACAGTCTCCATTCTTTTCAAAGTTGGGA
* *
909760 ACCAAAAACGCATTCCCTTTATTAGGATACATGACATTGATGCTTTAGTGTCGCAAGAAAAGCTT
195 ACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTAGTGTCGCAAGAAAAGCTT
* * * * * * *
909825 TTCCTTCCACTT-TTTCTGATAGAATCAGAGATTATCTTTTAAATAAGACAAACATGAATACTCA
260 TTCTTTCCACTTGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCG
** * *
909889 TACTAATCCCCATTCTGTTTAGGATGGGGCACTATAAACATAGTCTTCTCATTAGGATACATGAT
325 TACTAATCCCCATTCT-TTTAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGAT
* * *
909954 ACTGGTGCTTTGATTTTGCAAGAAAGGCTTTTTTCTCACCAATTTTAGTAAAGTCTATGTTCGTG
389 ACTGGTGCTTTGATTTCGCAAGAAAGGCTTTTTTCCCACCAATTTTAGTAAAGTCTAAGTTCGTG
* *
910019 CCTCAAAAGTGATAAACATGGA
454 CCTCAAAAGAGACAAACATGGA
* * * * * *
910041 TTCTAGTAATGATCTTCTTTCATTTAATGATTAGGCATAATAAACATATTCACATCATTAGGATA
1 TTCTAGTAATGATCTTCTTTCATTTTATGAGTAGGCAT-ATAAACACATTCTCCTCTTTAGGATA
* ** * *
910106 AATGATATTGATGATTTTCTTTTGCATAGAAATCTTTTCTTTGTTCTATTTTTCTTAAAATAAAA
65 AATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGACCTATTTTCCTTAAAATCAAA
* * * * * * * *
910171 GTTCA-CCCTTAAATGACACAAACATCAATTCTCGTAACAATCTCCTTTCTTTTTAGAA-TTGGG
130 GTTCATCCCTTAAATAAGACAAGCATCGATTCTCATAACAGTCTCCATTCTTTTCA-AAGTTGGG
* * *
910234 AACCAAAAACGCATTCCCTTTATTA-GATACACGACATTGATGCTTT-GTTGTCGCAAGAAAAGC
194 AACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTAG-TGTCGCAAGAAAAGC
* * * ** **
910297 TTTT-TTTCCCCTTGTTTTTCATAGAATTAAAGTTTGTCTCGAAAATAAGGGAAACATGAATACT
258 TTTTCTTTCCACTTGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACT
* * * *
910361 CGTACTAATCCCCAATTTTTTTAGGATTAGGCACTATAAACATAGTCTTCTTATTAGGATACATG
323 CGTACTAATCCCC-ATTCTTTTAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACACG
* * * * * *
910426 ATATTGGTGCTTT-AGTTTCACGAGAAAGGC-TTTTTCCCTACTAATTTTACTAAAGTCCAAGTT
387 ATACTGGTGCTTTGA-TTTCGCAAGAAAGGCTTTTTTCCC-ACCAATTTTAGTAAAGTCTAAGTT
*
910489 CGTGCCTCAAAAGAGACAAACTTGGA
450 CGTGCCTCAAAAGAGACAAACATGGA
* * * *
910515 TTCTAGTAAAGA---TCTTTCATTTTATAAGTAGCCACTATAAACACATTCTCCTCATTAGGATA
1 TTCTAGTAATGATCTTCTTTCATTTTATGAGTAGGCA-TATAAACACATTCTCCTCTTTAGGATA
* * *
910577 AATGATATTGATGATTTTCTTTTG--TGTGAAATTCGTTTCTTTGCCCTATTTTCCCTAAAATCA
65 AATGATATTGATGATTTTCTTTTGCATG-GAAA-TCTTTTCTTTGACCTATTTTCCTTAAAATCA
* * * * * * *
910640 AAGTTCATCCTTTAAAAAAGATAAGCCTCAATTCTCATAAAAGTCTCCATTCTTTTCAAGGTT-G
128 AAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCATAACAGTCTCCATTCTTTTCAAAGTTGG
* * * * *
910704 GAACTAAAAACACATTCTCTTCATTAGGATACTTGACTTTGATGCTTTTGTGTCGCAAGAAAAGC
193 GAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTAGTGTCGCAAGAAAAGC
* * * * * * *
910769 TTTTCTTTCCA-GTGCTTATGATAGAATGAAAGTTTGTCCCTTAAATAAGACAAACACGAATACA
258 TTTTCTTTCCACTTGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACT
* ** ** * *
910833 CGTACTAATCCCCATACTTTTCAGGACGAGGTGCCATAAACATAGTCTTCTCTTTAGGATGCACG
323 CGTACTAATCCCCATTCTTTT-AGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACACG
* * *
910898 ATACTGGTGCTTTGATTTCGCAAGAAAGGCTTTTTTCCCAGCAATTTTAGTCAAGTCT-ATTTCG
387 ATACTGGTGCTTTGATTTCGCAAGAAAGGCTTTTTTCCCACCAATTTTAGTAAAGTCTAAGTTCG
910962 TGCCTCAAAAGAGACAAACATGGA
452 TGCCTCAAAAGAGACAAACATGGA
* * * *
910986 TTCTAGTAATGATCTTTTTTCATTTTATGAGTAAGCAATATAAACATATTCTCTTCTTTAGGATA
1 TTCTAGTAATGATCTTCTTTCATTTTATGAGTAGGC-ATATAAACACATTCTCCTCTTTAGGATA
*
911051 AATGATATTGATGATTATCTTTTGCATGGAAATCTTTTCTTT-ACCCTATTTTCCTTAAAATCAA
65 AATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGA-CCTATTTTCCTTAAAATCAA
* * * * **
911115 AGTTCATCCCTTAAATAAGATAAGCATTGATTCTCGTAATAGTCTCCATTCTTTTCAGGGTT-GG
129 AGTTCATCCCTTAAATAAGACAAGCATCGATTCTCATAACAGTCTCCATTCTTTTCAAAGTTGGG
* * * * * *
911179 AACTAAAAACATATTCTCTTCATTAGGATACATGGCATTGATGCTTTAGTGTCGTAACAAAAGCT
194 AACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTAGTGTCGCAAGAAAAGCT
* *
911244 TTTCTATCCA-TTGTTTTTGATAGAATCAAAGTTTGTCTCCTAAATAAGACAAACATGAATACTC
259 TTTCTTTCCACTTGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTC
** * * * * * *
911308 GTGTTAACCCCCATTCCTTTCAAGG-TTAGGCACCATAAACATAATTTTCTTATTAGGATAGACG
324 GTACTAATCCCCATT-CTTT-TAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACACG
* * * * * * *
911372 ATATTGGAGCTTT-AGTATCGCAAGAAATGCTTTTTTCCCATCAATTTTATTAAAGTCTAAGTTT
387 ATACTGGTGCTTTGA-TTTCGCAAGAAAGGCTTTTTTCCCACCAATTTTAGTAAAGTCTAAGTTC
* *
911436 GAGTCTCAAAAGAGACAAACATGGA
451 GTGCCTCAAAAGAGACAAACATGGA
* * * * *
911461 TTCTAGTAATGATCTTCTTTCATTTTATGTGTAGGCACTATAAACACATTTTCCTTTTTCGGCTA
1 TTCTAGTAATGATCTTCTTTCATTTTATGAGTAGGCA-TATAAACACATTCTCCTCTTTAGGATA
* *
911526 AATGATATTAATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAA
65 AATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGACCTATTTTCCTTAAAATCAAA
* * * * * * * ** *
911591 GTTTATTCTTTAAATAAGACAAGCATCGATTCTCGTAATATTCTCCATTATTTTCATGGCTGGGA
130 GTTCATCCCTTAAATAAGACAAGCATCGATTCTCATAACAGTCTCCATTCTTTTCAAAGTTGGGA
* * * * * * * * * * * *
911656 ACCAAAAACACGTTCCCTTTATTATGATATAGGATATTAAAGCTGTAGTGCCACAAGAAAATCTT
195 ACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTAGTGTCGCAAGAAAAGCTT
* * * * *
911721 TTCTTTCCA-TTGTTTTTGACAAAATTAAAATTTGTCTCTTAAATAAGATAAACATGAATACTCG
260 TTCTTTCCACTTGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCG
* ** * *
911785 TGCTAATCCCCATTCTTTTCAGGATTAGGCACGGTAAACTTAGTCTTCTTATTAGGATACACGAT
325 TACTAATCCCCATTCTTTT-AGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGAT
* * *
911850 ACTGGTGCTTTGATTTCGCAGGAAAGGCTTTTTTCCCGCCAATTTTAGTAAAGTCTAAGTTCATG
389 ACTGGTGCTTTGATTTCGCAAGAAAGGCTTTTTTCCCACCAATTTTAGTAAAGTCTAAGTTCGTG
* *
911915 CCTTAAAAGAGACAAATATGGA
454 CCTCAAAAGAGACAAACATGGA
* * * * *
911937 TTCTAGTAATAATCTTCCTTCATTTTATGAGTAGGCACTATAAACATATTCCCCTCATTAGGATA
1 TTCTAGTAATGATCTTCTTTCATTTTATGAGTAGGCA-TATAAACACATTCTCCTCTTTAGGATA
* * * * *
912002 AATGATATTGATGATTTTCTTTTGCTTGGAAATCTTTTCTTTGCCCTATTATACTAAAAATCAAA
65 AATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGACCTATTTTCCTTAAAATCAAA
* * * * *
912067 GTTTATCCCTTAAATAAGATAAGCATCGTTTCTCATAACAGGCTCCATTCTTTTCAAAGTTGAGA
130 GTTCATCCCTTAAATAAGACAAGCATCGATTCTCATAACAGTCTCCATTCTTTTCAAAGTTGGGA
* *
912132 ACCAAAAACACATTCCCTTCATTAGGATACATGACAATGATGCTTTAGTGTCACAAGAAAAGCTT
195 ACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTAGTGTCGCAAGAAAAGCTT
* *
912197 TTCTTTCCA-TCT-TTTTTGATAAAAATCAAAGTTT-TCTCCTAAATAAGACAAACATGAATACT
260 TTCTTTCCACT-TGTTTTTGAT-AGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACT
* * * *
912259 CATACTAATCCCCATTCTTTTTAGAATGAGGCACTATAAACATAGTCTTCTCATTAGGATACACG
323 CGTACTAATCCCCATTC-TTTTAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACACG
* * *
912324 ATACTGGT-CGTTTGATTTTGCAAGAAAGGCTTTTTTCTCACCAATTTTAGTAAAGTCTATGTTC
387 ATACTGGTGC-TTTGATTTCGCAAGAAAGGCTTTTTTCCCACCAATTTTAGTAAAGTCTAAGTTC
*
912388 GTGCCTCAAAAGAGACAAACGTGGA
451 GTGCCTCAAAAGAGACAAACATGGA
* *
912413 TTCTAGTAATGATCTTCTTTCATTTTATGAGTAAGCATTATAAACACATTCTCTTCTTTAGGATA
1 TTCTAGTAATGATCTTCTTTCATTTTATGAGTAGGCA-TATAAACACATTCTCCTCTTTAGGATA
* *
912478 AATGATATTGATGATTTTCTTTTGCGTGGAAAT-TTTTCTTTG-CCGTATTTTCTTTAAAATCAA
65 AATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGACC-TATTTTCCTTAAAATCAA
* * * * ** *
912541 AGTTCATCCTTTAAATAAGACAAGCATTGATTCTCGTAATAGTCTTTATTCTTTTCAAGGTT-GG
129 AGTTCATCCCTTAAATAAGACAAGCATCGATTCTCATAACAGTCTCCATTCTTTTCAAAGTTGGG
*** * * * * * *
912605 AATTGAAAACATATTCTCTTCGTTAGGATACATGGCATTGATGCTTTTGTGTCGC-AGCAAAAGA
194 AACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTAGTGTCGCAAG-AAAAGC
* * * *
912669 TTTTCTTTCC-TTTGTTTTTGAT-GAATCAAAATTTATCTCCTAAATAAGACAAACATGAATACT
258 TTTTCTTTCCACTTGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACT
** * * * * * * *
912732 CGTGTTAACCCCCATTCTTTTCGGGTTTAGGCACCATAAATATAGCCTTCTCATTAGGATAGATG
323 CGTACTAATCCCCATTCTTTT-AGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACACG
* * * * * *
912797 ATATTAGAGCTTT-AGTTTCGCAAGAAATGCTTTTTTCCCATCAATTTTATTAAAGTCT
387 ATACTGGTGCTTTGA-TTTCGCAAGAAAGGCTTTTTTCCCACCAATTTTAGTAAAGTCT
912855 GTTAGGATCT
Statistics
Matches: 2814, Mismatches: 423, Indels: 108
0.84 0.13 0.03
Matches are distributed among these distances:
469 1 0.00
470 4 0.00
471 166 0.06
472 220 0.08
473 156 0.06
474 635 0.23
475 576 0.20
476 1034 0.37
477 22 0.01
ACGTcount: A:0.31, C:0.18, G:0.14, T:0.37
Consensus pattern (475 bp):
TTCTAGTAATGATCTTCTTTCATTTTATGAGTAGGCATATAAACACATTCTCCTCTTTAGGATAA
ATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGACCTATTTTCCTTAAAATCAAAG
TTCATCCCTTAAATAAGACAAGCATCGATTCTCATAACAGTCTCCATTCTTTTCAAAGTTGGGAA
CCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTAGTGTCGCAAGAAAAGCTTT
TCTTTCCACTTGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCGT
ACTAATCCCCATTCTTTTAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGATAC
TGGTGCTTTGATTTCGCAAGAAAGGCTTTTTTCCCACCAATTTTAGTAAAGTCTAAGTTCGTGCC
TCAAAAGAGACAAACATGGA
Found at i:913146 original size:20 final size:20
Alignment explanation
Indices: 913121--913174 Score: 81
Period size: 20 Copynumber: 2.7 Consensus size: 20
913111 CAAAATCCTT
*
913121 AAATGTATCGATACACCTCC
1 AAATGTATCGATACACCACC
**
913141 AAATGTATCGATACATGACC
1 AAATGTATCGATACACCACC
913161 AAATGTATCGATAC
1 AAATGTATCGATAC
913175 TTACAAAGAA
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.39, C:0.22, G:0.13, T:0.26
Consensus pattern (20 bp):
AAATGTATCGATACACCACC
Found at i:921355 original size:20 final size:19
Alignment explanation
Indices: 921326--921364 Score: 69
Period size: 20 Copynumber: 2.0 Consensus size: 19
921316 AGGTCAAAAC
921326 CCTTAAATGTATCGATACA
1 CCTTAAATGTATCGATACA
921345 CCTTCAAATGTATCGATACA
1 CCTT-AAATGTATCGATACA
921365 TAATGCACAA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 4 0.21
20 15 0.79
ACGTcount: A:0.36, C:0.23, G:0.10, T:0.31
Consensus pattern (19 bp):
CCTTAAATGTATCGATACA
Found at i:921411 original size:20 final size:22
Alignment explanation
Indices: 921386--921438 Score: 67
Period size: 21 Copynumber: 2.5 Consensus size: 22
921376 ATTGATACAT
*
921386 TGTATCGATACATGAC-CA-AA
1 TGTATCGATACATGACAAAGAA
*
921406 TGTATCGATAC-TTACAAAGAA
1 TGTATCGATACATGACAAAGAA
921427 TGTATCGATACA
1 TGTATCGATACA
921439 GGTGATTGGC
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
19 3 0.11
20 12 0.43
21 13 0.46
ACGTcount: A:0.40, C:0.17, G:0.15, T:0.28
Consensus pattern (22 bp):
TGTATCGATACATGACAAAGAA
Found at i:921464 original size:11 final size:11
Alignment explanation
Indices: 921444--921474 Score: 53
Period size: 11 Copynumber: 2.8 Consensus size: 11
921434 ATACAGGTGA
*
921444 TTGGCTGTAAC
1 TTGGCAGTAAC
921455 TTGGCAGTAAC
1 TTGGCAGTAAC
921466 TTGGCAGTA
1 TTGGCAGTA
921475 GCCACCCTTA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.23, C:0.16, G:0.29, T:0.32
Consensus pattern (11 bp):
TTGGCAGTAAC
Found at i:922467 original size:475 final size:473
Alignment explanation
Indices: 921524--922770 Score: 1544
Period size: 475 Copynumber: 2.6 Consensus size: 473
921514 TCAAAGTTCA
* ** * ** * * *
921524 CAAGAAAGGCTTTTTTCCTACTAATTTTACCAAAATCCAAGTTCGTGCCTCAAAAGAGACAAACT
1 CAAGAAAGGCATTTTTCCCGCCAATTTTAGTAAAGTCTAAGTTCGTGCCTCAAAAGAGACAAACA
* * * *
921589 TGGATTCTAGTAA-A--ATCTTTCCTTTTATGAGT-AGTCACTATAAACACATTTTCCTCAATAG
66 TGGATTCTAGTAATATCTTCTTTCATTTTATGAGTAAG-CACTATAAACACATTCTCCTCATTAG
** * *
921650 GATAAATGATATTGATGATTTTCTTTTGTGTGAAAATCTTTTCTTTGCTCTATTTTCCTTAAAAT
130 GATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAAT
* * * *
921715 CAAAGTTCATGCCTTAACA-AAGACAAGCCTCAATTCTCATAAAAGTCTCCATTTTTTTCAATGT
195 CAAAGTTCATCCCTTAA-ATAAGACAAGCATCGATTCTCATAAAAGTCTCCATTCTTTTC-ATGT
* * * * *** * * * *
921779 TGGAACTAAAAACACATTCTCTTTGTTAGGATACATGTTGTTGATGCTTTAATGTCGCAAGAAAA
258 TGGAACCAAAAACACATTCCCTTTATTAGGATACAAGACATTAAAGCTGTAATGCCGCAAGAAAA
* * * *
921844 GCTTTTCTTTCCATTGCTTATGATAGAATGAAAGTTTGTCTCTTAAATAAGACAAACACGAATAC
323 ACTTTTCTTTCAATTGCTTATGATAAAATGAAAGTTTATCTCTTAAATAAGACAAACACGAATAC
* ** * *
921909 ACGTGCTAATCCCCATACTTTTCAGGATGAGGTGCCATAAACATTGTCTTCTCTTTAGGATGCAC
388 ACATGCTAATCCCCATACTTTTCAGGATGAGGCACCATAAACATTGTCTTCTCATTAGGATACAC
*
921974 GATACTAGTGCTTTGATTTCG
453 GATACTAATGCTTTGATTTCG
* * *
921995 CAAGAAAGGCTTTTTTCCCAG-CAATTTTAGTCAAGTCT-ATTTCGTGCCTCAAAAGAGACAAAC
1 CAAGAAAGGCATTTTTCCC-GCCAATTTTAGTAAAGTCTAAGTTCGTGCCTCAAAAGAGACAAAC
* * *
922058 ATGGATTCTAGTAATGATCTTCTTTCATTTTATGAGTAAGCATTATAAACACATTCTCTTCTTTA
65 ATGGATTCTAGTAAT-ATCTTCTTTCATTTTATGAGTAAGCACTATAAACACATTCTCCTCATTA
922123 GGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAA
129 GGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAA
* * * * * * *
922188 TCAAAGTTTATTCTTTAAATAAGACAAGCATCGATTCTCGTAATATTCTCCCTTCTTTTCATGGT
194 TCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCATAAAAGTCTCCATTCTTTTCAT-GT
* * * *
922253 TGGGAACCAAAAGCACGTTCCCTTTATTATGATA-AAGCACATTAAAGCTGTAGTGCCGCAAGAA
258 T-GGAACCAAAAACACATTCCCTTTATTAGGATACAAG-ACATTAAAGCTGTAATGCCGCAAGAA
* * * * *
922317 AAACTTTTCTTTCAATTGTTTTTGATAAAATTAAAGTTTATCTCTTAAATAAGATAAACATGAAT
321 AAACTTTTCTTTCAATTGCTTATGATAAAATGAAAGTTTATCTCTTAAATAAGACAAACACGAAT
* * * **
922382 ACTCATGCTAATCCCCATTCTTTTCAGGATTAGGCACTGTAAAC-TTAGTCTTCTCATTAGGATA
386 ACACATGCTAATCCCCATACTTTTCAGGATGAGGCACCATAAACATT-GTCTTCTCATTAGGATA
922446 CACGATACTAATGCTTTGATTTCG
450 CACGATACTAATGCTTTGATTTCG
* * *
922470 CAAGAAAGGCATTTTTCCCGCCAATTTTAGTAAAGTCTAAGTTCATGCCTTAAAAGAGACAAATA
1 CAAGAAAGGCATTTTTCCCGCCAATTTTAGTAAAGTCTAAGTTCGTGCCTCAAAAGAGACAAACA
* * * *
922535 TGGATTCTAGGAATAATCTTCCTTCATTTTATGAGTAGGCACTATAAACACATTCCCCTCATTAG
66 TGGATTCTAGTAAT-ATCTTCTTTCATTTTATGAGTAAGCACTATAAACACATTCTCCTCATTAG
* * *
922600 GATAAATGATATTGATAATTTTCTTTTGCTTGGAAATCTTTTCTTT-CCCTATTATCCTTAAAAT
130 GATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAAT
* * *
922664 CAAAGTTCATCCCTTAAATAAGATAAGCATTGATTCTCATAACAGTCTCCATTCTTTTCAAAT-T
195 CAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCATAAAAGTCTCCATTCTTTTC--ATGT
* *
922728 TAGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATT
258 T-GGAACCAAAAACACATTCCCTTTATTAGGATACAAGACATT
922771 GATGCTTAAA
Statistics
Matches: 662, Mismatches: 98, Indels: 28
0.84 0.12 0.04
Matches are distributed among these distances:
470 37 0.06
471 29 0.04
472 1 0.00
473 3 0.00
474 153 0.23
475 312 0.47
476 125 0.19
477 2 0.00
ACGTcount: A:0.32, C:0.19, G:0.13, T:0.37
Consensus pattern (473 bp):
CAAGAAAGGCATTTTTCCCGCCAATTTTAGTAAAGTCTAAGTTCGTGCCTCAAAAGAGACAAACA
TGGATTCTAGTAATATCTTCTTTCATTTTATGAGTAAGCACTATAAACACATTCTCCTCATTAGG
ATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATC
AAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCATAAAAGTCTCCATTCTTTTCATGTTGG
AACCAAAAACACATTCCCTTTATTAGGATACAAGACATTAAAGCTGTAATGCCGCAAGAAAAACT
TTTCTTTCAATTGCTTATGATAAAATGAAAGTTTATCTCTTAAATAAGACAAACACGAATACACA
TGCTAATCCCCATACTTTTCAGGATGAGGCACCATAAACATTGTCTTCTCATTAGGATACACGAT
ACTAATGCTTTGATTTCG
Found at i:923216 original size:13 final size:13
Alignment explanation
Indices: 923198--923224 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
923188 TACACAAAGT
923198 ATGTATCGATACA
1 ATGTATCGATACA
923211 ATGTATCGATACA
1 ATGTATCGATACA
923224 A
1 A
923225 AAAAAATTGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.41, C:0.15, G:0.15, T:0.30
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:923221 original size:32 final size:33
Alignment explanation
Indices: 923180--923243 Score: 94
Period size: 32 Copynumber: 2.0 Consensus size: 33
923170 TAGCCAAACT
* **
923180 TGTATCGATACACAAAGTA-TGTATCGATACAA
1 TGTATCGATACAAAAAAAATTGTATCGATACAA
923212 TGTATCGATACAAAAAAAATTGTATCGATACA
1 TGTATCGATACAAAAAAAATTGTATCGATACA
923244 TTGGCTTGTA
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
32 16 0.57
33 12 0.43
ACGTcount: A:0.44, C:0.14, G:0.14, T:0.28
Consensus pattern (33 bp):
TGTATCGATACAAAAAAAATTGTATCGATACAA
Found at i:929502 original size:20 final size:20
Alignment explanation
Indices: 929459--929504 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 20
929449 AAAACTTTTG
929459 CAAAATACTTGTTTTTCACTT
1 CAAAATACTTGTTTTTCAC-T
*
929480 CAAATTACTTCGTTTTTCA-T
1 CAAAATACTT-GTTTTTCACT
929500 CAAAA
1 CAAAA
929505 CCAGCATAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
20 5 0.23
21 9 0.41
22 8 0.36
ACGTcount: A:0.33, C:0.20, G:0.04, T:0.43
Consensus pattern (20 bp):
CAAAATACTTGTTTTTCACT
Found at i:931228 original size:39 final size:40
Alignment explanation
Indices: 931174--931264 Score: 96
Period size: 39 Copynumber: 2.3 Consensus size: 40
931164 GGGGAGACTT
* * *
931174 TTTAATAAAAGGGGAGAATGCATAAATTTGCTAAAATTA-
1 TTTAATTAAGGGGGAGAATGCACAAATTTGCTAAAATTAC
* * * *
931213 TCTT-ATTAAGGGGGAGATTGTACGAATTTGTTAAAATTAC
1 T-TTAATTAAGGGGGAGAATGCACAAATTTGCTAAAATTAC
931253 TTTAATTAAGGG
1 TTTAATTAAGGG
931265 AGAAAGAAAA
Statistics
Matches: 42, Mismatches: 7, Indels: 5
0.78 0.13 0.09
Matches are distributed among these distances:
39 31 0.74
40 11 0.26
ACGTcount: A:0.38, C:0.05, G:0.21, T:0.35
Consensus pattern (40 bp):
TTTAATTAAGGGGGAGAATGCACAAATTTGCTAAAATTAC
Found at i:931713 original size:19 final size:18
Alignment explanation
Indices: 931689--931752 Score: 66
Period size: 20 Copynumber: 3.7 Consensus size: 18
931679 TAGCCAAACT
931689 TGTATCGATACACAAAATA
1 TGTATCGATACACAAAA-A
931708 TGTATCGAT--AC---AA
1 TGTATCGATACACAAAAA
931721 TGTATCGATACACAAAAAA
1 TGTATCGATACAC-AAAAA
931740 TTGTATCGATACA
1 -TGTATCGATACA
931753 TTGGCTTGTA
Statistics
Matches: 38, Mismatches: 0, Indels: 13
0.75 0.00 0.25
Matches are distributed among these distances:
13 10 0.26
14 1 0.03
15 2 0.05
17 2 0.05
19 11 0.29
20 12 0.32
ACGTcount: A:0.44, C:0.16, G:0.12, T:0.28
Consensus pattern (18 bp):
TGTATCGATACACAAAAA
Found at i:931725 original size:13 final size:13
Alignment explanation
Indices: 931707--931732 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
931697 TACACAAAAT
931707 ATGTATCGATACA
1 ATGTATCGATACA
931720 ATGTATCGATACA
1 ATGTATCGATACA
931733 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:931730 original size:32 final size:33
Alignment explanation
Indices: 931689--931752 Score: 112
Period size: 32 Copynumber: 2.0 Consensus size: 33
931679 TAGCCAAACT
*
931689 TGTATCGATACACAAAATA-TGTATCGATACAA
1 TGTATCGATACACAAAAAATTGTATCGATACAA
931721 TGTATCGATACACAAAAAATTGTATCGATACA
1 TGTATCGATACACAAAAAATTGTATCGATACA
931753 TTGGCTTGTA
Statistics
Matches: 30, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
32 18 0.60
33 12 0.40
ACGTcount: A:0.44, C:0.16, G:0.12, T:0.28
Consensus pattern (33 bp):
TGTATCGATACACAAAAAATTGTATCGATACAA
Found at i:933824 original size:474 final size:472
Alignment explanation
Indices: 932503--934978 Score: 2767
Period size: 474 Copynumber: 5.2 Consensus size: 472
932493 TTCACATACC
* * * * *
932503 AATCCCTATTCTTTTTAGGATGAGGCACTATAAACATAGTCTTCTCA-TAGGATACACGATACTG
1 AATCCCCATTCTTTTCAGGATGAGGCACCATAAACATAGTCTTCTCATTAGGATACACGATAATT
* * *
932567 GTGCTTTGATTTTGCAAGAAAGGCTTTTTTCTCACCAATTTTAGTAAAGTCTATGTTCGTGCCTC
66 GTGCTTTGATTTCGCAAGAAAGGCTTTTTTCCCA-CAATTTTAATAAAGTCTAT-TTCGTGCCTC
* * * *
932632 AAAAGTGGCAAACATGGATTCTAGTAATGATCTTCTTTCATTTAATGATTAGGCA-TAATAAACA
129 AAAAGAGACAAACATGGATTCTAGTAATGATCTTCTTTCATTTTATGAGTAGGCACT-ATAAACA
* * * **
932696 TATTTACATCATTAGGATAAATGATATTGATGATTTTCTTTTGCAAGGAAATCTTTTCTTTGTTC
193 CATTT-CTTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCC
* * * * * * *
932761 TATTTTTCTTTAAATAAAAGTTCATCCCTTAAACAACACAAACATTAATTCTCATAACAGTCTCC
257 TATTTTCCTTAAAATCAAAGTTCATCCCTTAAAAAAGACAAGCATTGATTCTCATAACAGTCTCC
932826 ATTCTTTTC-AGGATTGGAAGCCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTT
322 ATTCTTTTCAAGG-TTGGAA-CCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTT
* * ** * * **
932890 T-GTTGTTGCAAGAAAATCTTTT-TTTCCCCT-CATTTTTCATAGAATTAAAGTTTGTCTCAAAA
385 TAG-TGTCGCAAGAAAAGCTTTTCTTTCCATTGC--TTTTGATAGAATCAAAGTTTGTCTCTTAA
932952 ATAAG-GCAAACATGAATACTCGTACT
447 ATAAGAG-AAACATGAATACTCGTACT
* * * * * *
932978 AATCCCCATTCTTTTTAGAATTAGGCACTATAAACATAGTCTTCTCATTAGGATACATGATATTT
1 AATCCCCATTCTTTTCAGGATGAGGCACCATAAACATAGTCTTCTCATTAGGATACACGATAATT
* * ** * *
933043 GTGCTTT-AGTTTCACAAGAAAGGCTTTTTTCCTACTAATTTTACCAAAATCCAAGTTT-GTGCC
66 GTGCTTTGA-TTTCGCAAGAAAGGCTTTTTTCCCAC-AATTTTAATAAAGT-CTA-TTTCGTGCC
* ** ** *
933106 TCAAAAGAGACAAACTTGGATTCCCGTAA--A-AATCTTTCATTTTATGAGTAGGAACTATAAAC
127 TCAAAAGAGACAAACATGGATTCTAGTAATGATCTTCTTTCATTTTATGAGTAGGCACTATAAAC
** * * *
933168 ACA-TTC-TCATTAGGATAAATGATATTGATGATTTTCTTTTGTGTGAAAATTTTTTCTTTTCCC
192 ACATTTCTTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCC
* * * * *
933231 TATTTTCCTTAAAATCAAAGTTCATCCCTTAAAAAAGATAAGCCTCGATTCTCGTAAAAGTCTCC
257 TATTTTCCTTAAAATCAAAGTTCATCCCTTAAAAAAGACAAGCATTGATTCTCATAACAGTCTCC
* ** * * *
933296 ATTCTTATCAAGGTTGGAACTGAAAATACATTCTCTTCATCAGGATACATGACATTGATGCTTTA
322 ATTCTTTTCAAGGTTGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTA
* * * * *
933361 GTGTTGCAAGAAAAGCTTTTCTTTCCATTGCTTATGATAGAATGAAAGTTTATCTCTTGAATAAG
387 GTGTCGCAAGAAAAGCTTTTCTTTCCATTGCTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAG
*
933426 AGAAACACGAATACAT-GTACT
452 AGAAACATGAATAC-TCGTACT
* ** * * * *
933447 AATCCCCATACTTTTCAGGATGAGGTGCCATAAACATAGTTTTCTCTTTAGGATGCACAATAATT
1 AATCCCCATTCTTTTCAGGATGAGGCACCATAAACATAGTCTTCTCATTAGGATACACGATAATT
* * *
933512 GTGCTTTGATTTCGCAAGAAAGGCTTTTTTCCCAGCAATTTTAATCAAGTCTATTTCATGCCTTA
66 GTGCTTTGATTTCGCAAGAAAGGCTTTTTTCCCA-CAATTTTAATAAAGTCTATTTCGTGCCTCA
* * *
933577 AAAGAGACAAACATGGATTCTAGTATTGATCTTCTTTCATTTTATGAGTAAGCATTATAAACACA
130 AAAGAGACAAACATGGATTCTAGTAATGATCTTCTTTCATTTTATGAGTAGGCACTATAAACACA
* *
933642 TTCTCTTCTTTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCTTA
195 TT-TCTTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTA
* * * *
933707 TTTTCCTTAATATCAAAGTTCATCCCTTAAAAAAGACAAGCATTGATCCTCTTAATAGTCTCCAT
259 TTTTCCTTAAAATCAAAGTTCATCCCTTAAAAAAGACAAGCATTGATTCTCATAACAGTCTCCAT
* *** * *
933772 TCTTTTCAAGGTTAGAACTGTAAACATATTCTCTTCATTAGGATACATGACATTGATGCTTTAGT
324 TCTTTTCAAGGTTGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTAGT
*
933837 GTCGCAACAAAAGCTTTTCTTTCCATTG-TTTTCGATAGAATCAAAGTTTGTCTCTTAAATAAGA
389 GTCGCAAGAAAAGCTTTTCTTTCCATTGCTTTT-GATAGAATCAAAGTTTGTCTCTTAAATAAGA
* * **
933901 TAAACATAAATACTCGTGTT
453 GAAACATGAATACTCGTACT
* * * * * *
933921 AACCCCCATTCTTTTCGGGATTAGGCACCATAAACATCGTCTTCTCATTAGGATAGACGATAATG
1 AATCCCCATTCTTTTCAGGATGAGGCACCATAAACATAGTCTTCTCATTAGGATACACGATAATT
* * * * *
933986 GAGCTTT-AGTTTCGCAAGAAACGCTTTTTTCCCATCAATTTTATTAAAGTCTAAGTTCGAGCCT
66 GTGCTTTGA-TTTCGCAAGAAAGGCTTTTTTCCCA-CAATTTTAATAAAGTCT-ATTTCGTGCCT
* *
934050 CAAAAGAGACAAACATGGATTCTAG-AATGTTCTTCTTTCATTTTATGTGTAGGCACTATAAACA
128 CAAAAGAGACAAACATGGATTCTAGTAATGATCTTCTTTCATTTTATGAGTAGGCACTATAAACA
**
934114 CATTTTCCTT--TTTCGAGTAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGC
193 CA-TTT-CTTCATTAGGA-TAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGC
* * * * * * * *
934177 CCTATTTTCTTTAAAATCAAAGTTTATCCTTTAAATAAGACAAGCATTAATTCTCGTAATATTCT
255 CCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAAAAAGACAAGCATTGATTCTCATAACAGTCT
* * * * * * *
934242 TCATTCTTTTCATGGTTGGGAACCAAAAGCACATTCCCTTTATTATGATACAGGACATTGAAGCT
320 CCATTCTTTTCAAGGTT-GGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCT
* * * * *
934307 GTAG-GCCGC-AGAAAAAGCTTTTCTTTCCATTGTTTTTGATAAAATCAAAGTTTGTCTCTTTAA
384 TTAGTGTCGCAAG-AAAAGCTTTTCTTTCCATTGCTTTTGATAGAATCAAAGTTTGTCTCTTAAA
* * * * *
934370 TAAGACAAAGATAAATACTCATGCT
448 TAAGAGAAACATGAATACTCGTACT
** * * * *
934395 AATCCCCATTCTTTTCAATATTAGGCACCACAAACTTAGTCTTCTTATTAGGATACACGAT-ATT
1 AATCCCCATTCTTTTCAGGATGAGGCACCATAAACATAGTCTTCTCATTAGGATACACGATAATT
* * * *
934459 GGTGCTTTGATTTCGCAAGAAAGGCTTTTTTCACACCAATTTTAGTAAAGTCTAAGTTCGTACCT
66 -GTGCTTTGATTTCGCAAGAAAGGCTTTTTTCCCA-CAATTTTAATAAAGTCT-ATTTCGTGCCT
* * * * *
934524 TAAAAGAGAAAAATATGGATTCTAGTAATAATCCTCTTTCATTTTATGAGTAGGCACTATAAACA
128 CAAAAGAGACAAACATGGATTCTAGTAATGATCTTCTTTCATTTTATGAGTAGGCACTATAAACA
* * * *
934589 CATTCCCCTCATTAGGATAAATGATATTGATGATTTTCTTTT-AATTGAAAATCTTTTCTTTGCC
193 CATT-TCTTCATTAGGATAAATGATATTGATGATTTTCTTTTGCA-TGGAAATCTTTTCTTTGCC
* * * * * *
934653 CTATTTTCCTTAAAATCAAAATTAATCTCTTAAATAAGATAAGCATTGTTTCTCATAACAGTCTC
256 CTATTTTCCTTAAAATCAAAGTTCATCCCTTAAAAAAGACAAGCATTGATTCTCATAACAGTCTC
* * *
934718 CATTCTTTTCAAAGTTGCGAACCAAAAACATATTCCCTTCATTAGGATACATGACACTGATGCTT
321 CATTCTTTTCAAGGTTG-GAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTT
* * *
934783 TAGTGTCGCACA-AAAAGCTTTTCTTTCCATCT-TTTTTGATAGAATCAAAGATTATCTCTTAAA
385 TAGTGTCGCA-AGAAAAGCTTTTCTTTCCAT-TGCTTTTGATAGAATCAAAGTTTGTCTCTTAAA
* *
934846 TAAG-GCAAACATGAAAACTCATACT
448 TAAGAG-AAACATGAATACTCGTACT
* * * *
934871 AATCCTCATTCCTTTT-AGGATGAGGCACTATAAACATAGTCTTCTCATTACGATACACGATACT
1 AATCCCCATT-CTTTTCAGGATGAGGCACCATAAACATAGTCTTCTCATTAGGATACACGATAAT
* * * * *
934935 AGTGTTTTGATTTTGCAAGAAATGTTTTTTTCCCACTAATTTTA
65 TGTGCTTTGATTTCGCAAGAAAGGCTTTTTTCCCAC-AATTTTA
934979 GCAAAAGCTT
Statistics
Matches: 1691, Mismatches: 263, Indels: 93
0.83 0.13 0.05
Matches are distributed among these distances:
467 3 0.00
468 30 0.02
469 193 0.11
470 128 0.08
471 35 0.02
472 3 0.00
473 41 0.02
474 692 0.41
475 317 0.19
476 236 0.14
477 11 0.01
478 2 0.00
ACGTcount: A:0.32, C:0.18, G:0.13, T:0.37
Consensus pattern (472 bp):
AATCCCCATTCTTTTCAGGATGAGGCACCATAAACATAGTCTTCTCATTAGGATACACGATAATT
GTGCTTTGATTTCGCAAGAAAGGCTTTTTTCCCACAATTTTAATAAAGTCTATTTCGTGCCTCAA
AAGAGACAAACATGGATTCTAGTAATGATCTTCTTTCATTTTATGAGTAGGCACTATAAACACAT
TTCTTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATT
TTCCTTAAAATCAAAGTTCATCCCTTAAAAAAGACAAGCATTGATTCTCATAACAGTCTCCATTC
TTTTCAAGGTTGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTAGTGT
CGCAAGAAAAGCTTTTCTTTCCATTGCTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAGAA
ACATGAATACTCGTACT
Found at i:935137 original size:186 final size:186
Alignment explanation
Indices: 934795--935165 Score: 566
Period size: 186 Copynumber: 2.0 Consensus size: 186
934785 GTGTCGCACA
* * *
934795 AAAAGCTTTTCTTTCCATCTTTTTTGATAGAATCAAAGATTATCTCTTAAATAAGGCAAACATGA
1 AAAAGCTTTTCTTTCCATCGTTTTTGATAGAATCAAAGATTATCTCTTAAATAAGACAAACAAGA
*
934860 AAACTCATACTAATCCTCATTCCTTTTAGGATGAGGCACTATAAACATAGTCTTCTCATTACGAT
66 AAACTCATACTAATCCTCATTCCTTTTAGGATGAGGCACTATAAACATAGTCTTCTCATTACGAC
* * * *
934925 ACACGATACTAGTGTTTTGATTTTGCAAGAAATGTTTTTTTCCCACTAATTTTAGC
131 ACACGACACTAGTGTTTTGATTTTGCAAGAAAGGCTTTTTTCCCACCAATTTTAGC
*
934981 AAAAGCTTTTTTTTCCATCGTTTTTGATAGAATCAAAGATTATCTCTTAAATAAGACAAACAAGA
1 AAAAGCTTTTCTTTCCATCGTTTTTGATAGAATCAAAGATTATCTCTTAAATAAGACAAACAAGA
* * * * * *
935046 ATACTCATATTAATCCTCATT-CTTTTAAGGATTAGGTACTATGAACATAGTCTTCTCATTAGGA
66 AAACTCATACTAATCCTCATTCCTTTT-AGGATGAGGCACTATAAACATAGTCTTCTCATTACGA
*
935110 CACACGACACTAGT-TCTTTGCTTTTGCAAGAAAGGCTTTTTTCCCACCAATTTTAG
130 CACACGACACTAGTGT-TTTGATTTTGCAAGAAAGGCTTTTTTCCCACCAATTTTAG
935166 TAAAGTCTGT
Statistics
Matches: 167, Mismatches: 16, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
185 6 0.04
186 161 0.96
ACGTcount: A:0.32, C:0.18, G:0.12, T:0.37
Consensus pattern (186 bp):
AAAAGCTTTTCTTTCCATCGTTTTTGATAGAATCAAAGATTATCTCTTAAATAAGACAAACAAGA
AAACTCATACTAATCCTCATTCCTTTTAGGATGAGGCACTATAAACATAGTCTTCTCATTACGAC
ACACGACACTAGTGTTTTGATTTTGCAAGAAAGGCTTTTTTCCCACCAATTTTAGC
Found at i:939847 original size:475 final size:476
Alignment explanation
Indices: 938295--941995 Score: 4725
Period size: 475 Copynumber: 7.8 Consensus size: 476
938285 TTTCATAGAA
* * * * ** * *
938295 AAACTTGAATACTCGTACTAATCCCTATTCTTTTTAGGATTAGGCACCGTAAATATAGTTTTCTC
1 AAACATGAATACTCATACTAATCCCCATTCTTTTTAGGATGAGGCACTATAAACATAGTCTTCTC
* * * * * * *
938360 ATTAGGATAGACGATATTGGAGCTTTGGTTTCGCAAGAAA--CTTTTTTTCCCTATCAATTTTAT
66 ATTAGGATACACGATACTGGTGCTTTGATTTTGCAAGAAAGGC-TTTTTT-CCTACCAATTTTAG
* * * *
938423 TAAAGTCTAAGTTCGAGCCTTAAAAGAGACTAACATGGATTCTAGTAATGATCTTCTTTCATTTT
129 TAAAGTCTATGTTCGTGCCTCAAAAGAGACAAACATGGATTCTAGTAATGATCTTCTTTCATTTT
* * ** * *
938488 ATGTGTAGGCACTATAAACACATTCTCCTTTTTAGGGTAAATGATATTTG-TGATTTTTTTTTGC
194 ATGAGTAAGCACTATAAACACATTCTCCTCATTAGGATAAATGATA-TTGATGATTTTCTTTTGC
* * * *
938552 ATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCGAAGTTTATCCCTTAAATAAGACAAGCA
258 ACGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCA
* * ** * * *
938617 TTGATTCTCATAATAGTCTCCATTCTTTTCATTGTTGGGAACCAAAAGCACATTCCCTTTATTAT
323 TCGATTCTCATAACAGTCTCCATTCTTTTCAAAGTTGGGAACCAAAAACACATTCCCTTCATTAG
** * * *
938682 GATACCGGACATTGAAGCTTTAGTG-CTGCAAGAAAAGCTTTTCTTTCCA-CTATTTTTGATAAA
388 GATACATGACATTGATGCTTTGGTGTC-GCAAGAAAAGCTTTTCTTTCCATC-ATTTTTGATAGA
938745 ATCAAAG-TTACTCTCTTAAATAAGAC
451 ATCAAAGATTA-TCTCTTAAATAAGAC
* *** * * * *
938771 AAACATGAATACTCGTGGAAATCCCCATTCTTTTCAGGATTAGGCACCATAAACGTAGTCTTCTC
1 AAACATGAATACTCATACTAATCCCCATTCTTTTTAGGATGAGGCACTATAAACATAGTCTTCTC
* * *** *
938836 ATTAGGATACACGATACTAGTGCTTTAATTTCATAAGAAAGGCTTTTTTCCTGCCAATTTTAGTA
66 ATTAGGATACACGATACTGGTGCTTTGATTTTGCAAGAAAGGCTTTTTTCCTACCAATTTTAGTA
* * * * * * * *
938901 AAGTCGAAGTTCATGCCTTTAAAA-AGACAAATACGGATTCTAGTAATAATTTTCTTTCATTTTA
131 AAGTCTATGTTCGTGCC-TCAAAAGAGACAAACATGGATTCTAGTAATGATCTTCTTTCATTTTA
* * * * * * *
938965 CGAGCAAGTACCATAAACACATTCCCCTCATTAGGATAAATGATATTGATCATTTTCTTTTGCAT
195 TGAGTAAGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCAC
* * *
939030 GGAAATCTTTTCTTTGCCTTATTTTCCTTAAAATCAAAG-T-ATCCCTTAAATAAGAGAAGCATC
260 GAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATC
* * *
939093 GATTCTCATAAAAGTCTCCATTCTTTTCAAAGTTGGGAACCAAAAGCACATTCCCTTCATTAGCA
325 GATTCTCATAACAGTCTCCATTCTTTTCAAAGTTGGGAACCAAAAACACATTCCCTTCATTAGGA
* * * *
939158 TACATGACATTGATGCTTTAGTGTCGCAACAAATGCTTTTCTTTCCATCTTTTTTGATAGAATCA
390 TACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCATCATTTTTGATAGAATCA
939223 AAGATTATCTCTTAAATAAGAC
455 AAGATTATCTCTTAAATAAGAC
* *
939245 AAACA-CAGATACTCATACTAATCCCCATTCTTTTTAGGATGAGACACTATAAACATAGTCTTCT
1 AAACATGA-ATACTCATACTAATCCCCATTCTTTTTAGGATGAGGCACTATAAACATAGTCTTCT
* *
939309 CATTAGGATACACGATACTGGCGCTTTGATTTTGCAAGAAAGGCTTTTTTTCTCACCAATTTTAG
65 CATTAGGATACACGATACTGGTGCTTTGATTTTGCAAGAAAGGCTTTTTTCCT-ACCAATTTTAG
* *
939374 TAAAGTCTATGTTCGTGCCTCAAAAAAGACAAAGATGGATTCTAGTAATGATCTTCTTTCATTTT
129 TAAAGTCTATGTTCGTGCCTCAAAAGAGACAAACATGGATTCTAGTAATGATCTTCTTTCATTTT
* * * * * * * *
939439 ATTATTAGGCACAATAAGCATATTCTCATCATTAGGACAAATGATATTGATGATTCTT-TTTTGC
194 ATGAGTAAGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATT-TTCTTTTGC
* * * * * * * *
939503 ATGGAAATATTTTCTTTGTCCTATTTTTCTTAAAATAAAAGTTCATCCCTTAAATAACACAAACA
258 ACGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCA
* * * * * * * * *
939568 TCAATTCTCATACCAGTTTCCATTCTTTT-TAGGATTGGGATCCAAAAACACAGTCTCTTTATTA
323 TCGATTCTCATAACAGTCTCCATTCTTTTCAAAG-TTGGGAACCAAAAACACATTCCCTTCATTA
* * * * *
939632 AGATACACGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTC-TTCCCTCGTTTTTCATAGAA
387 GGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCATCATTTTTGATAGAA
* ** * *
939696 TTAAAGATGGTCTCTAAAATAAGCC
452 TCAAAGATTATCTCTTAAATAAGAC
* * * * *
939721 AAACAAGAATACTCATACTAATCTCCATTCTTTTTAGGATTAGTCACCATAAACATAGTCTTCTC
1 AAACATGAATACTCATACTAATCCCCATTCTTTTTAGGATGAGGCACTATAAACATAGTCTTCTC
* * ** * * * *
939786 ATTAGGATACATGATATTGGTGCTTT-AGTTTCACAAGAAATGCTTTTCTCCTACTAATTTTACT
66 ATTAGGATACACGATACTGGTGCTTTGA-TTTTGCAAGAAAGGCTTTTTTCCTACCAATTTTAGT
* * * * * * *
939850 AAAGTCCAAGTTCGTGCCTCACAAGATATAAACATTGATTCTAGTAAAGA---TCTTTCATTTTA
130 AAAGTCTATGTTCGTGCCTCAAAAGAGACAAACATGGATTCTAGTAATGATCTTCTTTCATTTTA
* ***
939912 TGAGTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGTGT
195 TGAGTAAGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCAC
* * * *
939977 GAAAATCTTTTCATTGCCCTATTTTCTTTAAAATAAAAGTTCATCCTTTAAATAAGACAAGCATC
260 GAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATC
* *** * *
940042 GATTCTCATAACAGTCTCCATTCTTTTCAAGGTTGGGAAATGAAAACGCATTCCCTTTATTAGGA
325 GATTCTCATAACAGTCTCCATTCTTTTCAAAGTTGGGAACCAAAAACACATTCCCTTCATTAGGA
* ** * *** *
940107 TACATGACATTGATGCTTTAGTGTCTTAAGAAAAGCTTTGCTTTCCATTGCTTTTGATAAAATCA
390 TACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCATCATTTTTGATAGAATCA
* *
940172 AAGTTTGTCTCTTAAATAAGAC
455 AAGATTATCTCTTAAATAAGAC
** * * * * *
940194 AATTATGAATACACGTACTAATCCCCATTCTTTTAAGGATGAGGCACTATAAACATAGACCTCTC
1 AAACATGAATACTCATACTAATCCCCATTCTTTTTAGGATGAGGCACTATAAACATAGTCTTCTC
* * *
940259 TTTAAGATACAC-ATACTGGTGCTTTGATTTTGCAAGAAAGGCTTTTTTCCCACCAATTTTAGTA
66 ATTAGGATACACGATACTGGTGCTTTGATTTTGCAAGAAAGGCTTTTTTCCTACCAATTTTAGTA
* * * *
940323 AAGTCTATGTTCGTCCCTCAAAAGAGACAAACATAGATTCTAGTAACGATCTCCTTTCATTTTAT
131 AAGTCTATGTTCGTGCCTCAAAAGAGACAAACATGGATTCTAGTAATGATCTTCTTTCATTTTAT
* *
940388 GATTAAGCACTATAAACACATTCTCCCCATTAGGATAAATGATATTGATGATTTTCTTTTGCACG
196 GAGTAAGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCACG
* * * *
940453 AAAATCTTTTCCTTGCCCAATTTTCCTTAAAATCAAAGTTCATCCCTTAAAAAAGATAAGCATCG
261 AAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCG
* * *
940518 ATTCTCGTAATAGTCTCCATTCTTTTCAAAGTTAGGAACCAAAAACACATTCCCTTCATTAGGAT
326 ATTCTCATAACAGTCTCCATTCTTTTCAAAGTTGGGAACCAAAAACACATTCCCTTCATTAGGAT
* * *
940583 ACATGACATTGATGTTTTAGG-GTCGCAAGAAAAGATTTTCTTTCCATCATATTTT-ATACAATC
391 ACATGACATTGATGCTTT-GGTGTCGCAAGAAAAGCTTTTCTTTCCATCAT-TTTTGATAGAATC
940646 AAAGATTATCTCTTAAATAAGAC
454 AAAGATTATCTCTTAAATAAGAC
* * * * *
940669 AAACATGAATGCTCATACTAATCCCTATTCTCTTCAGGATGAGGTACTATAAACATAGTCTTCTC
1 AAACATGAATACTCATACTAATCCCCATTCTTTTTAGGATGAGGCACTATAAACATAGTCTTCTC
* * * *
940734 ATTAGGATACACGATACTAGAGCTTTGATTTTGCAAGAAAGGCTTTTTCCCAACCAATTTTAGTA
66 ATTAGGATACACGATACTGGTGCTTTGATTTTGCAAGAAAGGCTTTTTTCCTACCAATTTTAGTA
* * * *
940799 AAGTCTATGTTCGTGCCTCAAAAGAGACTAACGTGGATTTTAGTAATGATCTTCTTTCATTTAAT
131 AAGTCTATGTTCGTGCCTCAAAAGAGACAAACATGGATTCTAGTAATGATCTTCTTTCATTTTAT
* *
940864 GAATAAGCACTATAAACACATTCTCCTCATTAGGATAAATGACATTGATGATTTTCTTTTGCACG
196 GAGTAAGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCACG
* * *
940929 AAAATCTTTTCATTT-CCCTATTTTCCTTAAAATCAAAGTTCATCCTTTAAATAGGACAAGTATC
261 AAAATCTTTTC-TTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATC
* * * *
940993 GATTTTCGTAACAGTCTCTATTCTTTTCAAAGTTGGGAACCAAAAATACATTCCCTTCATTAGGA
325 GATTCTCATAACAGTCTCCATTCTTTTCAAAGTTGGGAACCAAAAACACATTCCCTTCATTAGGA
* *
941058 TACATGACATTGATGTTTTAGG-GTCACAAGAAAAGCTTTTCTTTCCATCATTTTTGATAGAATC
390 TACATGACATTGATGCTTT-GGTGTCGCAAGAAAAGCTTTTCTTTCCATCATTTTTGATAGAATC
*
941122 AAATATTATCTC-TAAATAAGAC
454 AAAGATTATCTCTTAAATAAGAC
* * * *
941144 AAACATGAATACTCATACTAATCCCAAATCTTTTTAGGATGAGGCACTATAAACATAGACCTCTC
1 AAACATGAATACTCATACTAATCCCCATTCTTTTTAGGATGAGGCACTATAAACATAGTCTTCTC
* * *
941209 TTTAGGATACACGATACTGGTGCTTTGTTTTTGCAAGAAAGGCTTTTTTCCCACCAATTTTAGTA
66 ATTAGGATACACGATACTGGTGCTTTGATTTTGCAAGAAAGGCTTTTTTCCTACCAATTTTAGTA
* * *
941274 AAGTCTATGTTCATGCCTCAAAAGAGACAAACATGGATTCTAGTAACGATCTCCTTTCATTTTAT
131 AAGTCTATGTTCGTGCCTCAAAAGAGACAAACATGGATTCTAGTAATGATCTTCTTTCATTTTAT
* *
941339 GATTAAGCACTATAAACACATTCTCCCCATTAGGATAAATGATATTGATGATTTTCTTTTGCACG
196 GAGTAAGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCACG
* *
941404 AAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAAAAAGACAAGCATTG
261 AAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCG
* * * * *
941469 ATTCTCGTAATAGTCTTCGTTCTTTTCAAAGCTGGGAACCAAAAACACATTCCCTTCATTAGGAT
326 ATTCTCATAACAGTCTCCATTCTTTTCAAAGTTGGGAACCAAAAACACATTCCCTTCATTAGGAT
* * * * * *
941534 ATATGACATTGATGTTTTAGG-GTCGCAACAAAAGATTTTCTTTCCATCATTTTTTATACAATCA
391 ACATGACATTGATGCTTT-GGTGTCGCAAGAAAAGCTTTTCTTTCCATCATTTTTGATAGAATCA
941598 AAGATTATCTCTTAAATAAGAC
455 AAGATTATCTCTTAAATAAGAC
* * *
941620 AAACATGAATGCTCATACTAATCCCCATTCTTTTTGGGATGAGGTACTATAAACATAGTCTTCTC
1 AAACATGAATACTCATACTAATCCCCATTCTTTTTAGGATGAGGCACTATAAACATAGTCTTCTC
* * * *
941685 ATTAGGATACACGATACTAGAGCTTTGATTTTGCAAGAAAGGCTTTCTTCCAACCAATTTTAGTA
66 ATTAGGATACACGATACTGGTGCTTTGATTTTGCAAGAAAGGCTTTTTTCCTACCAATTTTAGTA
* * * * *
941750 AAGTCTATGTTCGTGCCTCAAAAGAGACTAACGTGGATTTTAGTAATAATCTTCTTTCATTTAAT
131 AAGTCTATGTTCGTGCCTCAAAAGAGACAAACATGGATTCTAGTAATGATCTTCTTTCATTTTAT
* *
941815 GA-AAAGCACTATAAACACATTCTCCTCATTAGGATAAATGACATTGATGATTTTCTTTTGCACG
196 GAGTAAGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCACG
* * * *
941879 AAAATCTTTTATTTTCCTTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGTATCG
261 AAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCG
* *
941944 ATTCTCGTAACAGTCTCTATTCTTTTCAAAGTTGGGAACCAAAAACACATTC
326 ATTCTCATAACAGTCTCCATTCTTTTCAAAGTTGGGAACCAAAAACACATTC
941996 TGATGACAAC
Statistics
Matches: 2808, Mismatches: 387, Indels: 61
0.86 0.12 0.02
Matches are distributed among these distances:
471 2 0.00
472 289 0.10
473 102 0.04
474 258 0.09
475 1119 0.40
476 916 0.33
477 121 0.04
478 1 0.00
ACGTcount: A:0.32, C:0.19, G:0.13, T:0.36
Consensus pattern (476 bp):
AAACATGAATACTCATACTAATCCCCATTCTTTTTAGGATGAGGCACTATAAACATAGTCTTCTC
ATTAGGATACACGATACTGGTGCTTTGATTTTGCAAGAAAGGCTTTTTTCCTACCAATTTTAGTA
AAGTCTATGTTCGTGCCTCAAAAGAGACAAACATGGATTCTAGTAATGATCTTCTTTCATTTTAT
GAGTAAGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCACG
AAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCG
ATTCTCATAACAGTCTCCATTCTTTTCAAAGTTGGGAACCAAAAACACATTCCCTTCATTAGGAT
ACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCATCATTTTTGATAGAATCAA
AGATTATCTCTTAAATAAGAC
Found at i:940578 original size:159 final size:157
Alignment explanation
Indices: 938493--941995 Score: 632
Period size: 159 Copynumber: 22.1 Consensus size: 157
938483 ATTTTATGTG
* * * * * * * *
938493 TAGGCACTATAAACACATTCTCCTT-TTTAGGGTAAATGATATTTG-TGATTTTTTTTTGCATGG
1 TAGGAACTATAAACACATTC-CCTTCATTAGGATACATGACA-TTGATG-TTTTCTTTTGCACGA
* * * * * * *
938556 AAATCTTTTCTTTGCCCTATTTTCCTTAAAATCGAAGTTTATCCCTTAAATAAGACAAGCATTGA
63 AAAGCTTTTCCTTGCCCAATTTT-CTTAAAATCAAAGTTCATCCCTTAAAAAAGACAAACA-TGA
* **
938621 TTCTCATAATAGTCTCCATTCTTTTCATTG-T
126 TTCTCGTAATAGTCTCCATTCTTTTCAAAGAT
* * * * ** * ** ** *
938652 TGGGAACCA-AAAGCACATTCCCTTTATTATGATACCGGACATTGAAGCTTTAGTGCTGCAAGAA
1 TAGGAACTATAAA-CACATTCCCTTCATTAGGATACATGACATTGATG-TTTTCTTTTGCACGAA
* * * *
938716 AAGCTTTT-CTTTCCACTATTTT-TGATAAAATCAAAGTT-ACTCTCTTAAATAAGACAAACATG
64 AAGCTTTTCCTTGCC-CAATTTTCT--TAAAATCAAAGTTCA-TCCCTTAAAAAAGACAAACATG
* * *
938778 AATACTCGTGGAA-A-TCCCCATTCTTTTC-AGGAT
125 -ATTCTCGT--AATAGTCTCCATTCTTTTCAAAGAT
* * ** * * * * * * ** *
938811 TAGGCACCATAAACGTAGT-CTTCTCATTAGGATACACGATACT-AGTGCTTTAATTT-CATAAG
1 TAGGAACTATAAACACATTCCCT-TCATTAGGATACATGACATTGA-TGTTTTCTTTTGC--ACG
* ** * * * * * *
938873 AAAGGCTTTTTTCC-TG-CCAATTTTAGTAAAGTCGAAGTTCATGCCTTTAAAAAGACAAATACG
62 AAAAGC--TTTTCCTTGCCCAATTTTCTTAAAATCAAAGTTCATCCCTTAAAAAAGACAAACA-T
* * * * * * *
938936 GATTCTAGTAATAATTTTCTTTCATTTT--ACGAG
124 GATTCTCGTAATAGTCTCCATTC-TTTTCAAAGAT
* * * * * * * * * *
938969 CAAGTACCATAAACACATTCCCCTCATTAGGATAAATGATATTGATCATTTTCTTTTGCATGGAA
1 TAGGAACTATAAACACATTCCCTTCATTAGGATACATGACATTGAT-GTTTTCTTTTGCACGAAA
* * ** * * *
939034 ATCTTTTCTTTGCCTTATTTTCCTTAAAATCAAAG-T-ATCCCTTAAATAAGAGAAGCATCGATT
65 AGCTTTTCCTTGCCCAATTTT-CTTAAAATCAAAGTTCATCCCTTAAAAAAGACAAACAT-GATT
* *
939097 CTCATAAAAGTCTCCATTCTTTTCAAAG-T
128 CTCGTAATAGTCTCCATTCTTTTCAAAGAT
* * * ** * *
939126 TGGGAACCA-AAAGCACATTCCCTTCATTAGCATACATGACATTGATGCTTTAGTGTCGCAAC-A
1 TAGGAACTATAAA-CACATTCCCTTCATTAGGATACATGACATTGATG-TTTTCTTTTGC-ACGA
* * * * *
939189 AATGCTTTT-CTT-TCC-ATCTTTTTTGATAGAATCAAAGATT-ATCTCTTAAATAAGACAAACA
63 AAAGCTTTTCCTTGCCCAAT-TTTCTT-A-A-AATCAAAG-TTCATCCCTTAAAAAAGACAAACA
* * * * * * * *
939250 CAGATACTCATACTAATCCCCATTCTTTT-TAGGAT
123 -TGATTCTCGTAATAGTCTCCATTCTTTTCAAAGAT
* * * * * * * ** ** *
939285 GA-GACACTATAAACATAGT-CTTCTCATTAGGATACACGATACTGGCGCTTTGATTTTGCAAGA
1 TAGGA-ACTATAAACACATTCCCT-TCATTAGGATACATGACATTGATG-TTTTCTTTTGCACGA
* * * ** * * * * * * *
939348 AAGGCTTTT-TTTCTCACCAATTTTAGTAAAGTCTATGTTCGTGCCTCAAAAAAGACAAAGATGG
63 AAAGCTTTTCCTT-GC-CCAATTTTCTTAAAATCAAAGTTCATCCCTTAAAAAAGACAAACAT-G
* * * **
939412 ATTCTAGTAAT-GATCTTCTTTCATTTT--ATTAT
125 ATTCTCGTAATAG-TCTCCATTC-TTTTCAAAGAT
* * * * * * * * * * *
939444 TAGGCACAATAAGCATATTCTCATCATTAGGACAAATGATATTGATGATTCTT-TTTTGCATGGA
1 TAGGAACTATAAACACATTCCCTTCATTAGGATACATGACATTGATG-TT-TTCTTTTGCACGAA
** * * * * * * *
939508 AATATTTTCTTTGTCCTATTTTTCTTAAAATAAAAGTTCATCCCTTAAATAACACAAACATCAAT
64 AAGCTTTTCCTTG-CCCAATTTTCTTAAAATCAAAGTTCATCCCTTAAAAAAGACAAACAT-GAT
* ** * * *
939573 TCTCATACCAGTTTCCATTCTTTT-TAGGAT
127 TCTCGTAATAGTCTCCATTCTTTTCAAAGAT
* * * * * * * * * ** * * *
939603 TGGGATCCAAAAACACAGTCTCTTTATTAAGATACACGACATTGATGCTTTGGTGTCGCAAGAAA
1 TAGGAACTATAAACACATTCCCTTCATTAGGATACATGACATTGATG-TTTTCTTTTGCACGAAA
* ** * * * * ** * * *
939668 AGCTTTT-CTTCCCTCGTTTTTCATAGAATTAAAGATGGTCTC-TAAAATAAGCCAAACAAGAAT
65 AGCTTTTCCTTGCC-CAATTTTCTTAAAATCAAAGTTCATCCCTTAAAA-AAGACAAACATG-AT
* * * * * *
939731 ACTCATACTAATCTCCATTCTTTT-TAGGAT
127 TCTCGTAATAGTCTCCATTCTTTTCAAAGAT
** * * * * * * * **
939761 TAGTCACCATAAACATAGT-CTTCTCATTAGGATACATGATATTGGTGCTTTAGTTT-CACAAGA
1 TAGGAACTATAAACACATTCCCT-TCATTAGGATACATGACATTGATGTTTTCTTTTGCAC--GA
* * * * * * * * * * * * *
939824 AATGCTTTTCTCCT-ACTAATTTTAC-TAAAGTCCAAGTTCGTGCCTCACAAGATATAAACATTG
63 AAAGCTTTTC-CTTGCCCAATTTT-CTTAAAATCAAAGTTCATCCCTTAAAAAAGACAAACA-TG
* * *
939887 ATTCTAGTAA-AGATCT---TTCATTTT--ATGAG
125 ATTCTCGTAATAG-TCTCCATTC-TTTTCAAAGAT
* * * ***
939916 TAGGCACTATAAACACATTCTCC-TCATTAGGATAAATGATATTGATGATTTTCTTTTGTGTGAA
1 TAGGAACTATAAACACATTC-CCTTCATTAGGATACATGACATTGATG-TTTTCTTTTGCACGAA
* * * * * * *
939980 AATCTTTTCATTGCCCTATTTTCTTTAAAATAAAAGTTCATCCTTTAAATAAGACAAGCATCGAT
64 AAGCTTTTCCTTGCCCAATTTTC-TTAAAATCAAAGTTCATCCCTTAAAAAAGACAAACAT-GAT
* * *
940045 TCTCATAACAGTCTCCATTCTTTTC-AAGGT
127 TCTCGTAATAGTCTCCATTCTTTTCAAAGAT
* * * * * * *
940075 TGGGAAATGA-AAACGCATTCCCTTTATTAGGATACATGACATTGATGCTTTAGTGTCTT--AAG
1 TAGGAACT-ATAAACACATTCCCTTCATTAGGATACATGACATTGATG-TTT--TCTTTTGCACG
* * * ** * * **
940137 AAAAGC-TTTGCTT-TCC-ATTGCTTTTGATAAAATCAAAGTTTGTCTCTTAAATAAGACAATTA
62 AAAAGCTTTTCCTTGCCCAATT--TTCT--TAAAATCAAAGTTCATCCCTTAAAAAAGACAAACA
* * * * * *
940199 TGAATACACGTACTAATCCCCATTCTTTT-AAGGAT
123 TG-ATTCTCGTAATAGTCTCCATTCTTTTCAAAGAT
* * * ** * * * * * * ** *
940234 GAGGCACTATAAACATA-GACCTCTCTTTAAGATACA-CATACTGGTGCTTTGATTTTGCAAGAA
1 TAGGAACTATAAACACATTCCCT-TCATTAGGATACATGACATTGATG-TTTTCTTTTGCACGAA
* * ** * * * * * *
940297 AGGCTTTT--TTCCCACCAATTTTAGTAAAGTCTATGTTCGTCCCTCAAAAGAGACAAACATAGA
64 AAGCTTTTCCTT-GC-CCAATTTTCTTAAAATCAAAGTTCATCCCTTAAAAAAGACAAACAT-GA
* * * *
940360 TTCTAGTAA-CGATCTCCTTTCATTTT--ATGAT
126 TTCTCGTAATAG-TCTCCATTC-TTTTCAAAGAT
* * * * *
940391 TAAGCACTATAAACACATTCTCC-CCATTAGGATAAATGATATTGATGATTTTCTTTTGCACGAA
1 TAGGAACTATAAACACATTC-CCTTCATTAGGATACATGACATTGATG-TTTTCTTTTGCACGAA
* * *
940455 AATCTTTTCCTTGCCCAATTTTCCTTAAAATCAAAGTTCATCCCTTAAAAAAGATAAGCATCGAT
64 AAGCTTTTCCTTGCCCAATTTT-CTTAAAATCAAAGTTCATCCCTTAAAAAAGACAAACAT-GAT
940520 TCTCGTAATAGTCTCCATTCTTTTCAAAG-T
127 TCTCGTAATAGTCTCCATTCTTTTCAAAGAT
* * *** * *
940550 TAGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGTTTTAGGGTCGCAAGAAA
1 TAGGAACTATAAACACATTCCCTTCATTAGGATACATGACATTGATGTTTT-CTTTTGCACGAAA
* * * * * *
940615 AGATTTT-CTTTCCATCATATTTT-ATACAATCAAAGATT-ATCTCTTAAATAAGACAAACATGA
65 AGCTTTTCCTTGCC--CA-ATTTTCTTAAAATCAAAG-TTCATCCCTTAAAAAAGACAAACATG-
* * * * * *
940677 ATGCTCATACTAATC-CCTATTCTCTTC-AGGAT
125 ATTCTCGTAATAGTCTCC-ATTCTTTTCAAAGAT
* * * * * * * * ** *
940709 GAGGTACTATAAACATAGT-CTTCTCATTAGGATACACGATACTAGA-GCTTTGATTTTGCAAGA
1 TAGGAACTATAAACACATTCCCT-TCATTAGGATACATGACA-TTGATG-TTTTCTTTTGCACGA
* *** ** * * * * * * * * *
940772 AAGGCTTTTTCC-CAACCAATTTTAGTAAAGTCTATGTTCGTGCCTCAAAAGAGACTAACGTGGA
63 AAAGC-TTTTCCTTGCCCAATTTTCTTAAAATCAAAGTTCATCCCTTAAAAAAGACAAACAT-GA
* * * * * * *
940836 TTTTAGTAAT-GATCTTCTTTCATTT-AATGAA
126 TTCTCGTAATAG-TCTCCATTCTTTTCAAAGAT
* * *
940867 TAAGCACTATAAACACATTCTCC-TCATTAGGATAAATGACATTGATGATTTTCTTTTGCACGAA
1 TAGGAACTATAAACACATTC-CCTTCATTAGGATACATGACATTGATG-TTTTCTTTTGCACGAA
* * * * * * * **
940931 AATCTTTTCATTTCCCTATTTTCCTTAAAATCAAAGTTCATCCTTTAAATAGGACAAGTATCGAT
64 AAGCTTTTCCTTGCCCAATTTT-CTTAAAATCAAAGTTCATCCCTTAAAAAAGACAAACAT-GAT
* * *
940996 TTTCGTAACAGTCTCTATTCTTTTCAAAG-T
127 TCTCGTAATAGTCTCCATTCTTTTCAAAGAT
* * * * ****
941026 TGGGAACCAAAAATACATTCCCTTCATTAGGATACATGACATTGATGTTTTAGGGT-CACAAGAA
1 TAGGAACTATAAACACATTCCCTTCATTAGGATACATGACATTGATGTTTTCTTTTGCAC--GAA
* * ** * * * *
941090 AAGCTTTT-CTTTCCATCATTTTTGATAGAATCAAA-TATTATCTC-TAAATAAGACAAACATGA
64 AAGCTTTTCCTTGCC--CAATTTTCTTAAAATCAAAGT-TCATCCCTTAAAAAAGACAAACATG-
* * * * * * *
941152 ATACTCATACTAATC-CCAAATCTTTT-TAGGAT
125 ATTCTCGTAATAGTCTCC-ATTCTTTTCAAAGAT
* * * ** * * * * * *
941184 GAGGCACTATAAACATA-GACCTCTCTTTAGGATACACGATACTGGTGCTTTGT-TTTTGCAAGA
1 TAGGAACTATAAACACATTCCCT-TCATTAGGATACATGACATTGATG-TTT-TCTTTTGCACGA
* * ** * * * * * *
941247 AAGGCTTTT--TTCCCACCAATTTTAGTAAAGTCTATGTTCATGCCTCAAAAGAGACAAACATGG
63 AAAGCTTTTCCTT-GC-CCAATTTTCTTAAAATCAAAGTTCATCCCTTAAAAAAGACAAACAT-G
* * * *
941310 ATTCTAGTAA-CGATCTCCTTTCATTTT--ATGAT
125 ATTCTCGTAATAG-TCTCCATTC-TTTTCAAAGAT
* * * * *
941342 TAAGCACTATAAACACATTCTCC-CCATTAGGATAAATGATATTGATGATTTTCTTTTGCACGAA
1 TAGGAACTATAAACACATTC-CCTTCATTAGGATACATGACATTGATG-TTTTCTTTTGCACGAA
* * * *
941406 AATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAAAAAGACAAGCATTGAT
64 AAGCTTTTCCTTGCCCAATTTT-CTTAAAATCAAAGTTCATCCCTTAAAAAAGACAAACA-TGAT
* * *
941471 TCTCGTAATAGTCTTCGTTCTTTTCAAAG-C
127 TCTCGTAATAGTCTCCATTCTTTTCAAAGAT
* * * * *** *
941501 TGGGAACCAAAAACACATTCCCTTCATTAGGATATATGACATTGATGTTTTAGGGTCGCAAC-AA
1 TAGGAACTATAAACACATTCCCTTCATTAGGATACATGACATTGATGTTTT-CTTTTGC-ACGAA
* * * *
941565 AAGATTTT-CTT-TCCATCATTTT-TTATACAATCAAAGATT-ATCTCTTAAATAAGACAAACAT
64 AAGCTTTTCCTTGCCCA--ATTTTCTTA-A-AATCAAAG-TTCATCCCTTAAAAAAGACAAACAT
* * * * * ***
941626 GAATGCTCATACTAATCCCCATTCTTTT-TGGGAT
124 G-ATTCTCGTAATAGTCTCCATTCTTTTCAAAGAT
* * * * * * * * ** *
941660 GAGGTACTATAAACATAGT-CTTCTCATTAGGATACACGATACTAGA-GCTTTGATTTTGCAAGA
1 TAGGAACTATAAACACATTCCCT-TCATTAGGATACATGACA-TTGATG-TTTTCTTTTGCACGA
* * ** * * * * * * * * *
941723 AAGGC-TTT-CTTCCAACCAATTTTAGTAAAGTCTATGTTCGTGCCTCAAAAGAGACTAACGTGG
63 AAAGCTTTTCCTTGC--CCAATTTTCTTAAAATCAAAGTTCATCCCTTAAAAAAGACAAACAT-G
* * * * * * *
941786 ATTTTAGTAATAATCTTCTTTCATTT-AATGA-
125 ATTCTCGTAATAGTCTCCATTCTTTTCAAAGAT
* * * *
941817 AAAGCACTATAAACACATTCTCC-TCATTAGGATAAATGACATTGATGATTTTCTTTTGCACGAA
1 TAGGAACTATAAACACATTC-CCTTCATTAGGATACATGACATTGATG-TTTTCTTTTGCACGAA
* ** * ** * **
941881 AATCTTTTATTTTCCTTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGTATCGAT
64 AAGCTTTTCCTTGCCCAATTTT-CTTAAAATCAAAGTTCATCCCTTAAAAAAGACAAACAT-GAT
* *
941946 TCTCGTAACAGTCTCTATTCTTTTCAAAG-T
127 TCTCGTAATAGTCTCCATTCTTTTCAAAGAT
* * *
941976 TGGGAACCAAAAACACATTC
1 TAGGAACTATAAACACATTC
941996 TGATGACAAC
Statistics
Matches: 2315, Mismatches: 820, Indels: 418
0.65 0.23 0.12
Matches are distributed among these distances:
154 6 0.00
155 65 0.03
156 72 0.03
157 279 0.12
158 719 0.31
159 1062 0.46
160 79 0.03
161 24 0.01
162 7 0.00
163 2 0.00
ACGTcount: A:0.32, C:0.19, G:0.13, T:0.36
Consensus pattern (157 bp):
TAGGAACTATAAACACATTCCCTTCATTAGGATACATGACATTGATGTTTTCTTTTGCACGAAAA
GCTTTTCCTTGCCCAATTTTCTTAAAATCAAAGTTCATCCCTTAAAAAAGACAAACATGATTCTC
GTAATAGTCTCCATTCTTTTCAAAGAT
Found at i:941072 original size:951 final size:953
Alignment explanation
Indices: 938295--941995 Score: 4819
Period size: 951 Copynumber: 3.9 Consensus size: 953
938285 TTTCATAGAA
* * * * ** * ***
938295 AAACTTGAATACTCGTACTAATCCCTATTCTTTTTAGGATTAGGCACCGTAAATATAGTTTTCTC
1 AAACATGAATACTCATACTAATCCCCATTCTTTTTAGGATGAGGCACTATAAACATAGACCTCTC
* * * * * * *
938360 ATTAGGATAGACGATATTGGAGCTTTGGTTTCGCAAGAAA--CTTTTTTTCCCTATCAATTTTAT
66 ATTAGGATACACGATACTGGTGCTTTGATTTTGCAAGAAAGGCTTTTTTTCCC-ACCAATTTTAG
* * * * * *
938423 TAAAGTCTAAGTTCGAGCCTTAAAAGAGACTAACATGGATTCTAGTAATGATCTTCTTTCATTTT
130 TAAAGTCTATGTTCGTGCCTCAAAAGAGACAAACATGGATTCTAGTAACGATCTCCTTTCATTTT
* *** * *
938488 ATG-TGTAGGCACTATAAACACATTCTCCTTTTTAGGGTAAATGATATTTG-TGATTTTTTTTTG
195 ATGAT-TAAGCACTATAAACACATTCTCCCCATTAGGATAAATGATA-TTGATGATTTTCTTTTG
* * * * *
938551 CATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCGAAGTTTATCCCTTAAATAAGACAAGC
258 CACGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAAAAAGACAAGC
* ** * *
938616 ATTGATTCTCATAATAGTCTCCATTCTTTTCATTGTTGGGAACCAAAAGCACATTCCCTTTATTA
323 ATCGATTCTCATAATAGTCTCCATTCTTTTCAAAGTTGGGAACCAAAAACACATTCCCTTCATTA
* ** * * * *
938681 TGATACCGGACATTGAAGCTTTAGTG-CTGCAAGAAAAGCTTTTCTTTCCA-C-TATTTTTGATA
388 GGATACATGACATTGATGCTTTAGGGTC-GCAAGAAAAGATTTTCTTTCCATCATA-TTTTCATA
* * ***
938743 AAATCAAAG-TTACTCTCTTAAATAAGACAAACATGAATACTCGTGGAAATCCCCATTCTTTTCA
451 CAATCAAAGATTA-TCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTCA
* * * * * *
938807 GGATTAGGCACCATAAACGTAGTCTTCTCATTAGGATACACGATACTAGTGCTTTAATTTCATAA
515 GGATGAGGTACCATAAACATAGTCTTCTCATTAGGATACACGATACTAGAGCTTTGATTTCACAA
* ** * * * * * *
938872 GAAAGGCTTTTTTCCTGCCAATTTTAGTAAAGTCGAAGTTCATGCCTTTAAAA-AGACAAATACG
580 GAAAGGCTTTTTCCCAACCAATTTTAGTAAAGTCTAAGTTCGTGCC-TCAAAAGAGACTAACATG
* * * ** * * *
938936 GATTCTAGTAATAATTTTCTTTCATTTTACGAGCAAGTACCATAAACACATTCCCCTCATTAGGA
644 GATTCTAGTAATAATCTTCTTTCATTTAATGAATAAGCACTATAAACACATTCTCCTCATTAGGA
* * * * *
939001 TAAATGATATTGATCATTTTCTTTTGCATGGAAATCTTTTC-TTTGCCTTATTTTCCTTAAAATC
709 TAAATGACATTGATGATTTTCTTTTGCACGAAAATCTTTTCATTT-CCCTATTTTCCTTAAAATC
* *
939065 AAAG-T-ATCCCTTAAATAAGAGAAGCATCGATTCTCATAAAAGTCTCCATTCTTTTCAAAGTTG
773 AAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCATAACAGTCTCCATTCTTTTCAAAGTTG
* * * * *
939128 GGAACCAAAAGCACATTCCCTTCATTAGCATACATGACATTGATGCTTTAGTGTCGCAACAAATG
838 GGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTAGTGTCACAAGAAAAG
*
939193 CTTTTCTTTCCATCTTTTTTGATAGAATCAAAGATTATCTCTTAAATAAGAC
903 CTTTTCTTTCCAT-TTTTTTGATAGAATCAAAGTTTATCTCTTAAATAAGAC
* * * *
939245 AAACA-CAGATACTCATACTAATCCCCATTCTTTTTAGGATGAGACACTATAAACATAGTCTTCT
1 AAACATGA-ATACTCATACTAATCCCCATTCTTTTTAGGATGAGGCACTATAAACATAGACCTCT
* *
939309 CATTAGGATACACGATACTGGCGCTTTGATTTTGCAAGAAAGGCTTTTTTTCTCACCAATTTTAG
65 CATTAGGATACACGATACTGGTGCTTTGATTTTGCAAGAAAGGCTTTTTTTCCCACCAATTTTAG
* * * *
939374 TAAAGTCTATGTTCGTGCCTCAAAAAAGACAAAGATGGATTCTAGTAATGATCTTCTTTCATTTT
130 TAAAGTCTATGTTCGTGCCTCAAAAGAGACAAACATGGATTCTAGTAACGATCTCCTTTCATTTT
* * * * * ** *
939439 ATTATTAGGCACAATAAGCATATTCTCATCATTAGGACAAATGATATTGATGATTCTT-TTTTGC
195 ATGATTAAGCACTATAAACACATTCTCCCCATTAGGATAAATGATATTGATGATT-TTCTTTTGC
* * * * * * * * *
939503 ATGGAAATATTTTCTTTGTCCTATTTTTCTTAAAATAAAAGTTCATCCCTTAAATAACACAAACA
259 ACGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAAAAAGACAAGCA
* ** * * * * * * *
939568 TCAATTCTCATACCAGTTTCCATTCTTTT-TAGGATTGGGATCCAAAAACACAGTCTCTTTATTA
324 TCGATTCTCATAATAGTCTCCATTCTTTTCAAAG-TTGGGAACCAAAAACACATTCCCTTCATTA
* * * * * *
939632 AGATACACGACATTGATGCTTT-GGTGTCGCAAGAAAAGCTTTTC-TTCCCTCGT-TTTTCATAG
388 GGATACATGACATTGATGCTTTAGG-GTCGCAAGAAAAGATTTTCTTTCCATCATATTTTCATAC
* ** * * * * *
939694 AATTAAAGATGGTCTCTAAAATAAGCCAAACAAGAATACTCATACTAATCTCCATTCTTTTTAGG
452 AATCAAAGATTATCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTCAGG
* * * * *
939759 ATTA-GTCACCATAAACATAGTCTTCTCATTAGGATACATGATATTGGTGCTTT-AGTTTCACAA
517 ATGAGGT-ACCATAAACATAGTCTTCTCATTAGGATACACGATACTAGAGCTTTGA-TTTCACAA
* * * * * * *
939822 GAAATGC-TTTTCTCCTACTAATTTTACTAAAGTCCAAGTTCGTGCCTCACAAGATA-TAAACAT
580 GAAAGGCTTTTTC-CCAACCAATTTTAGTAAAGTCTAAGTTCGTGCCTCAAAAGAGACT-AACAT
* * * *
939885 TGATTCTAGTAA-AGA---TCTTTCATTTTATGAGTAGGCACTATAAACACATTCTCCTCATTAG
643 GGATTCTAGTAATA-ATCTTCTTTCATTTAATGAATAAGCACTATAAACACATTCTCCTCATTAG
* *** * *
939946 GATAAATGATATTGATGATTTTCTTTTGTGTGAAAATCTTTTCATTGCCCTATTTTCTTTAAAAT
707 GATAAATGACATTGATGATTTTCTTTTGCACGAAAATCTTTTCATTTCCCTATTTTCCTTAAAAT
* * *
940011 AAAAGTTCATCCTTTAAATAAGACAAGCATCGATTCTCATAACAGTCTCCATTCTTTTCAAGGTT
772 CAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCATAACAGTCTCCATTCTTTTCAAAGTT
*** * * **
940076 GGGAAATGAAAACGCATTCCCTTTATTAGGATACATGACATTGATGCTTTAGTGTCTTAAGAAAA
837 GGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTAGTGTCACAAGAAAA
* * * *
940141 GCTTTGCTTTCCATTGCTTTTGATAAAATCAAAGTTTGTCTCTTAAATAAGAC
902 GCTTTTCTTTCCATT-TTTTTGATAGAATCAAAGTTTATCTCTTAAATAAGAC
** * * *
940194 AATTATGAATACACGTACTAATCCCCATTCTTTTAAGGATGAGGCACTATAAACATAGACCTCTC
1 AAACATGAATACTCATACTAATCCCCATTCTTTTTAGGATGAGGCACTATAAACATAGACCTCTC
* *
940259 TTTAAGATACAC-ATACTGGTGCTTTGATTTTGCAAGAAAGGC-TTTTTTCCCACCAATTTTAGT
66 ATTAGGATACACGATACTGGTGCTTTGATTTTGCAAGAAAGGCTTTTTTTCCCACCAATTTTAGT
* *
940322 AAAGTCTATGTTCGTCCCTCAAAAGAGACAAACATAGATTCTAGTAACGATCTCCTTTCATTTTA
131 AAAGTCTATGTTCGTGCCTCAAAAGAGACAAACATGGATTCTAGTAACGATCTCCTTTCATTTTA
940387 TGATTAAGCACTATAAACACATTCTCCCCATTAGGATAAATGATATTGATGATTTTCTTTTGCAC
196 TGATTAAGCACTATAAACACATTCTCCCCATTAGGATAAATGATATTGATGATTTTCTTTTGCAC
* * *
940452 GAAAATCTTTTCCTTGCCCAATTTTCCTTAAAATCAAAGTTCATCCCTTAAAAAAGATAAGCATC
261 GAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAAAAAGACAAGCATC
* *
940517 GATTCTCGTAATAGTCTCCATTCTTTTCAAAGTTAGGAACCAAAAACACATTCCCTTCATTAGGA
326 GATTCTCATAATAGTCTCCATTCTTTTCAAAGTTGGGAACCAAAAACACATTCCCTTCATTAGGA
*
940582 TACATGACATTGATGTTTTAGGGTCGCAAGAAAAGATTTTCTTTCCATCATATTTT-ATACAATC
391 TACATGACATTGATGCTTTAGGGTCGCAAGAAAAGATTTTCTTTCCATCATATTTTCATACAATC
* * *
940646 AAAGATTATCTCTTAAATAAGACAAACATGAATGCTCATACTAATCCCTATTCTCTTCAGGATGA
456 AAAGATTATCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTCAGGATGA
* **
940711 GGTACTATAAACATAGTCTTCTCATTAGGATACACGATACTAGAGCTTTGATTTTGCAAGAAAGG
521 GGTACCATAAACATAGTCTTCTCATTAGGATACACGATACTAGAGCTTTGATTTCACAAGAAAGG
* * *
940776 CTTTTTCCCAACCAATTTTAGTAAAGTCTATGTTCGTGCCTCAAAAGAGACTAACGTGGATTTTA
586 CTTTTTCCCAACCAATTTTAGTAAAGTCTAAGTTCGTGCCTCAAAAGAGACTAACATGGATTCTA
*
940841 GTAATGATCTTCTTTCATTTAATGAATAAGCACTATAAACACATTCTCCTCATTAGGATAAATGA
651 GTAATAATCTTCTTTCATTTAATGAATAAGCACTATAAACACATTCTCCTCATTAGGATAAATGA
940906 CATTGATGATTTTCTTTTGCACGAAAATCTTTTCATTTCCCTATTTTCCTTAAAATCAAAGTTCA
716 CATTGATGATTTTCTTTTGCACGAAAATCTTTTCATTTCCCTATTTTCCTTAAAATCAAAGTTCA
* * * * * *
940971 TCCTTTAAATAGGACAAGTATCGATTTTCGTAACAGTCTCTATTCTTTTCAAAGTTGGGAACCAA
781 TCCCTTAAATAAGACAAGCATCGATTCTCATAACAGTCTCCATTCTTTTCAAAGTTGGGAACCAA
* * *
941036 AAATACATTCCCTTCATTAGGATACATGACATTGATGTTTTAGGGTCACAAGAAAAGCTTTTCTT
846 AAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTAGTGTCACAAGAAAAGCTTTTCTT
*
941101 TCCATCATTTTTGATAGAATCAAA-TATTATCTC-TAAATAAGAC
911 TCCAT-TTTTTTGATAGAATCAAAGT-TTATCTCTTAAATAAGAC
* *
941144 AAACATGAATACTCATACTAATCCCAAATCTTTTTAGGATGAGGCACTATAAACATAGACCTCTC
1 AAACATGAATACTCATACTAATCCCCATTCTTTTTAGGATGAGGCACTATAAACATAGACCTCTC
* *
941209 TTTAGGATACACGATACTGGTGCTTTGTTTTTGCAAGAAAGGC-TTTTTTCCCACCAATTTTAGT
66 ATTAGGATACACGATACTGGTGCTTTGATTTTGCAAGAAAGGCTTTTTTTCCCACCAATTTTAGT
*
941273 AAAGTCTATGTTCATGCCTCAAAAGAGACAAACATGGATTCTAGTAACGATCTCCTTTCATTTTA
131 AAAGTCTATGTTCGTGCCTCAAAAGAGACAAACATGGATTCTAGTAACGATCTCCTTTCATTTTA
941338 TGATTAAGCACTATAAACACATTCTCCCCATTAGGATAAATGATATTGATGATTTTCTTTTGCAC
196 TGATTAAGCACTATAAACACATTCTCCCCATTAGGATAAATGATATTGATGATTTTCTTTTGCAC
*
941403 GAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAAAAAGACAAGCATT
261 GAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAAAAAGACAAGCATC
* * * *
941468 GATTCTCGTAATAGTCTTCGTTCTTTTCAAAGCTGGGAACCAAAAACACATTCCCTTCATTAGGA
326 GATTCTCATAATAGTCTCCATTCTTTTCAAAGTTGGGAACCAAAAACACATTCCCTTCATTAGGA
* * * *
941533 TATATGACATTGATGTTTTAGGGTCGCAACAAAAGATTTTCTTTCCATCAT-TTTTTATACAATC
391 TACATGACATTGATGCTTTAGGGTCGCAAGAAAAGATTTTCTTTCCATCATATTTTCATACAATC
* **
941597 AAAGATTATCTCTTAAATAAGACAAACATGAATGCTCATACTAATCCCCATTCTTTTTGGGATGA
456 AAAGATTATCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTCAGGATGA
* **
941662 GGTACTATAAACATAGTCTTCTCATTAGGATACACGATACTAGAGCTTTGATTTTGCAAGAAAGG
521 GGTACCATAAACATAGTCTTCTCATTAGGATACACGATACTAGAGCTTTGATTTCACAAGAAAGG
* * *
941727 CTTTCTT-CCAACCAATTTTAGTAAAGTCTATGTTCGTGCCTCAAAAGAGACTAACGTGGATTTT
586 CTTT-TTCCCAACCAATTTTAGTAAAGTCTAAGTTCGTGCCTCAAAAGAGACTAACATGGATTCT
941791 AGTAATAATCTTCTTTCATTTAATGAA-AAGCACTATAAACACATTCTCCTCATTAGGATAAATG
650 AGTAATAATCTTCTTTCATTTAATGAATAAGCACTATAAACACATTCTCCTCATTAGGATAAATG
*
941855 ACATTGATGATTTTCTTTTGCACGAAAATCTTTT-ATTTTCCTTATTTTCCTTAAAATCAAAGTT
715 ACATTGATGATTTTCTTTTGCACGAAAATCTTTTCA-TTTCCCTATTTTCCTTAAAATCAAAGTT
* * *
941919 CATCCCTTAAATAAGACAAGTATCGATTCTCGTAACAGTCTCTATTCTTTTCAAAGTTGGGAACC
779 CATCCCTTAAATAAGACAAGCATCGATTCTCATAACAGTCTCCATTCTTTTCAAAGTTGGGAACC
941984 AAAAACACATTC
844 AAAAACACATTC
941996 TGATGACAAC
Statistics
Matches: 2430, Mismatches: 279, Indels: 84
0.87 0.10 0.03
Matches are distributed among these distances:
946 2 0.00
947 369 0.15
948 208 0.09
949 243 0.10
950 515 0.21
951 1076 0.44
952 17 0.01
ACGTcount: A:0.32, C:0.19, G:0.13, T:0.36
Consensus pattern (953 bp):
AAACATGAATACTCATACTAATCCCCATTCTTTTTAGGATGAGGCACTATAAACATAGACCTCTC
ATTAGGATACACGATACTGGTGCTTTGATTTTGCAAGAAAGGCTTTTTTTCCCACCAATTTTAGT
AAAGTCTATGTTCGTGCCTCAAAAGAGACAAACATGGATTCTAGTAACGATCTCCTTTCATTTTA
TGATTAAGCACTATAAACACATTCTCCCCATTAGGATAAATGATATTGATGATTTTCTTTTGCAC
GAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAAAAAGACAAGCATC
GATTCTCATAATAGTCTCCATTCTTTTCAAAGTTGGGAACCAAAAACACATTCCCTTCATTAGGA
TACATGACATTGATGCTTTAGGGTCGCAAGAAAAGATTTTCTTTCCATCATATTTTCATACAATC
AAAGATTATCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTCAGGATGA
GGTACCATAAACATAGTCTTCTCATTAGGATACACGATACTAGAGCTTTGATTTCACAAGAAAGG
CTTTTTCCCAACCAATTTTAGTAAAGTCTAAGTTCGTGCCTCAAAAGAGACTAACATGGATTCTA
GTAATAATCTTCTTTCATTTAATGAATAAGCACTATAAACACATTCTCCTCATTAGGATAAATGA
CATTGATGATTTTCTTTTGCACGAAAATCTTTTCATTTCCCTATTTTCCTTAAAATCAAAGTTCA
TCCCTTAAATAAGACAAGCATCGATTCTCATAACAGTCTCCATTCTTTTCAAAGTTGGGAACCAA
AAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTAGTGTCACAAGAAAAGCTTTTCTT
TCCATTTTTTTGATAGAATCAAAGTTTATCTCTTAAATAAGAC
Found at i:948053 original size:471 final size:473
Alignment explanation
Indices: 947072--951503 Score: 4959
Period size: 471 Copynumber: 9.4 Consensus size: 473
947062 TGGTTTTCAT
* * * *
947072 CACATTCCCTTCATTAGGATACATGACATTGATGTTTTAGG-GTCACAAGAAAAGCTTTTCTTTC
1 CACATTCCTTTTATTAGGATACATGACATTGATGCTTT-GGTGTCGCAAGAAAAGCTTTTCTTTC
* *
947136 CATCATTTTTGATAGAATCAAA-TATTATCTC-TAAATAAGACAAACATGAATACTCATACTAAT
65 CATCGTTTTTCATAGAATCAAAGT-TTATCTCTTAAATAAGACAAACATGAATACTCATACTAAT
* * * *
947199 CCCAATTCTTTTCAAGATGACGCACTATAAACATAGTCTTCTCATTAGGATACACGATACCGGTG
129 CCCCATTCTTTTCAGGATGAGGCACTATAAACATAGTCTTCTCATTAGGATACATGATACCGGTG
** * *
947264 CTTT-GATTTTGCAAGAAAGGCTTTTTTCCCACCAATTTTAGTAAAGTCTATGTCCGTGCTTCAA
194 CTTTAG-TTTCACAAGAAAGGCTTTTTTCCCACCAATTTTAGTAAAGTCTATGTTCGTGCCTCAA
* * *
947328 AAGAGGCAAACATGGATTCTAGTAAAGATCTTCTTTCATTTTATG-GTTAAGCAATATAAACACA
258 AAGAGACAAACATGGATTCTAGTAATGA---TCTTTCATTTTATGAG-TAAGCACTATAAACACA
* * * * *
947392 TTCTCCTCATTAAGATAAATGATATTGAAGATTTTCTTTGGCATGGAAATCTTTTCTTTGTCCTA
319 TTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTA
* * * * * * * *
947457 TTTTTCTTAAAATAAAAGTTCAACCCTTGAATAACACAAACATCGATTCTCGTAACAGACTGCAT
384 TTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCAT
*
947522 TCTTTT-TAGGATTGGGAACCAAAAA
449 TCTTTTCAAGG-TTGGGAACCAAAAA
* * * * *
947547 CACATTTCTTTTATTCGGATACACGACATTGATGCTTTGGTGTCACGAA-AAGAGC-TTT-TTTC
1 CACATTCCTTTTATTAGGATACATGACATTGATGCTTTGGTGTCGC-AAGAAAAGCTTTTCTTTC
* * * * * *
947609 CCTCGTTTTTCATAGAATTAAAGTTTGTCTCTAAAATAAGGCAAACACGAATACTCATACTAATC
65 CATCGTTTTTCATAGAATCAAAGTTTATCTCTTAAATAAGACAAACATGAATACTCATACTAATC
* * * * * * **
947674 CCCATTTTTTTTAGGATTAGGCACCATAAACATAGTCTTCCCGTTAGGATACATGATATTGGTGC
130 CCCATTCTTTTCAGGATGAGGCACTATAAACATAGTCTTCTCATTAGGATACATGATACCGGTGC
* * * * * * *
947739 TTTAGTTTCACAAGAAAGGCTTTTTTCCTACTAATTTTACTAAAGTCCAAGTTCGTGCCTCATAG
195 TTTAGTTTCACAAGAAAGGCTTTTTTCCCACCAATTTTAGTAAAGTCTATGTTCGTGCCTCAAAA
* * * *
947804 GAGATAAACATGGATTTTAG-CATAGATCTTTCATTTTATGAGTAGGCACTATAAACACATTCTC
260 GAGACAAACATGGATTCTAGTAAT-GATCTTTCATTTTATGAGTAAGCACTATAAACACATTCTC
* **
947868 TTCATTAGGATAAATGATATTGATGATTTTCTTTTGTGTGAAAATCTTTTCTTTGCCCTATTTTC
324 CTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTC
* *
947933 CTCAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCATAACAGTCTCCATTCTTT
389 CTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCTTT
* ***
947998 TCAAGGCTGGGAAATGAAAA
454 TCAAGGTTGGGAACCAAAAA
** * * * *
948018 TGCATTCCTTTTGTTGGGATACATGACATTGATGCTTTAGTGTCTCAAGAAAAGCTTTTCTTTCC
1 CACATTCCTTTTATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCC
* * * * * * * * *
948083 ATTGCTTTTAATAAAATCAAAGTTTGTTTCTTAAATAAGACAAAAATGAATACACGTACTAATCC
66 ATCGTTTTTCATAGAATCAAAGTTTATCTCTTAAATAAGACAAACATGAATACTCATACTAATCC
* * * *
948148 CCATTCTTTTCAAGATGAGGCACTATAAACATAGACCTCTCATTAGGATACATGATACTGGTGCT
131 CCATTCTTTTCAGGATGAGGCACTATAAACATAGTCTTCTCATTAGGATACATGATACCGGTGCT
** * *
948213 TT-GATTTTGCAAGAAAGGCTTTTTTCCCACCAA-TTTAGTAAAGTCTATGTTCATACCTCAAAA
196 TTAG-TTTCACAAGAAAGGCTTTTTTCCCACCAATTTTAGTAAAGTCTATGTTCGTGCCTCAAAA
948276 GAGACAAACATGGATTCTAGTAATGATTTTCTTTCATTTTATG-GTTAAGCACTATAAACACATT
260 GAGACAAACATGGATTCTAGTAATGA---TCTTTCATTTTATGAG-TAAGCACTATAAACACATT
* ** *
948340 CTCCACATTAGGATAAATGATATTGATGATTTTCTTTTGCACAAAAATCTTTTCTTTGCCATATT
321 CTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATT
* *
948405 TTCCTTAAAATCAAACTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAATAGTCTCCATTC
386 TTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTC
* *
948470 TTTCCAAAGTTGGGAACCAAAAA
451 TTTTCAAGGTTGGGAACCAAAAA
* *
948493 CACATTCCCTTCT-TTAGGATACATGACATTGATGTTTTAGG-GTCGCAAGAAAAGCTTTT-TTT
1 CACATT-CCTTTTATTAGGATACATGACATTGATGCTTT-GGTGTCGCAAGAAAAGCTTTTCTTT
* * * *
948555 CCCATCATTTTTGATAGAATCAAAGATTATCTCTTAAATAAGATAAACATGAATACTCATACTAA
64 -CCATCGTTTTTCATAGAATCAAAGTTTATCTCTTAAATAAGACAAACATGAATACTCATACTAA
* * *
948620 TCCCCATTCTTTTTAGGATGAGGCACTATAAACATAGTCTTCTCATTAGGATACATGAAATCGGT
128 TCCCCATTCTTTTCAGGATGAGGCACTATAAACATAGTCTTCTCATTAGGATACATGATACCGGT
** * * * * *
948685 GCTTT-GATTTTGCAGGAAAGGCTTTTTTCCCACCAATTTTGGTGAAGTCTACGTTCATGCCTCA
193 GCTTTAG-TTTCACAAGAAAGGCTTTTTTCCCACCAATTTTAGTAAAGTCTATGTTCGTGCCTCA
* *
948749 AAA-AGACAAACATAGATTCTAGTAATGATCTTATTTCATTTTATGATTAAGCACTATAAACACA
257 AAAGAGACAAACATGGATTCTAGTAATGATC---TTTCATTTTATGAGTAAGCACTATAAACACA
* * *
948813 TTCTCCTCATTAGCG-TAAATGATATTAATGATTTTCTTTTGCATGGAAATCTTTTCTTTGTCCT
319 TTCTCCTCATTAG-GATAAATGATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCT
* * * * * *
948877 ATTTTTCTT-AAATAAAAGTTCATCCCTTGAATAACACAAACATCGATTCTCGTAATAGTCTCCA
383 ATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCA
* *
948941 TTCTTTTTAAGATTGGGAACCAAAAA
448 TTCTTTTCAAGGTTGGGAACCAAAAA
* **
948967 CACATTTCC-TTTATTAGGATACAGGACATTGATGCTTTGGTGTCGCGTGAAAAGCTTTT-TTTC
1 CACA-TTCCTTTTATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTC
* * * * * * * *
949030 CCTCGTTTGTCATAGAATTAAAGTTTGTCTCTAAAATAAGGCAAACACGAATACTCGTACTAATC
65 CATCGTTTTTCATAGAATCAAAGTTTATCTCTTAAATAAGACAAACATGAATACTCATACTAATC
* * ** **
949095 CCCATTCTTTTTATGATTTGGCACTATAAACATAGTCTTCTCATTAGGATACATGATATTGGTGC
130 CCCATTCTTTTCAGGATGAGGCACTATAAACATAGTCTTCTCATTAGGATACATGATACCGGTGC
* * * * * * * *
949160 TTTAGTTTCACAGGAAAGGCGTTTTTCCTACTAATTTTACTAAAGTCCAAGTTCGTGCCTCACAA
195 TTTAGTTTCACAAGAAAGGCTTTTTTCCCACCAATTTTAGTAAAGTCTATGTTCGTGCCTCAAAA
* * * *
949225 GAGATAAACATGGATTCTAGTAAAGATCTTTCATTTTGTGAGTAGGCACTATAAACACATTCTCC
260 GAGACAAACATGGATTCTAGTAATGATCTTTCATTTTATGAGTAAGCACTATAAACACATTCTCC
** * * * ** * * *
949290 TTGTTAAGATAAATGATATTGATGGTTCTCTTTTGTGTGAAAAGCTTTTCCTTACCCTATTTTCC
325 TCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCC
* * *
949355 TTAAAATCAAAGTTCATCCCTTAAAGAAGACAAGCATCGATTCTCATAACAATCTCCATTCTTTT
390 TTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCTTTT
949420 CAAGGTTGGGAACCAAAAA
455 CAAGGTTGGGAACCAAAAA
* * * * * *
949439 CACGTTCCCTTCATTAGGATACATGATATTGATGCTTTAGTATCGCAAGAAAAGCTTTTCTTTCC
1 CACATTCCTTTTATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCC
* * * *
949504 AT-TTTTTTCGATAAAATCAAAGATTATCTCTTAAAT-AGACAAACATGAATACTCGTACTAATC
66 ATCGTTTTTC-ATAGAATCAAAGTTTATCTCTTAAATAAGACAAACATGAATACTCATACTAATC
* * * * ***
949567 CCCATTCTTTTCAAGATGAGGCACTATAAACATAGTC-TGTCACTAGGATACACGATAATAGTGC
130 CCCATTCTTTTCAGGATGAGGCACTATAAACATAGTCTTCTCATTAGGATACATGATACCGGTGC
* * * *
949631 TTCGATTTTGCA-AA-AAAGGCTTTTTTCCCACCAATTTTAGTCAAGTCTATGTTCATGCCTCAA
195 TT-TAGTTT-CACAAGAAAGGCTTTTTTCCCACCAATTTTAGTAAAGTCTATGTTCGTGCCTCAA
* * * *
949694 AAGAGACAAACATGGATTCT-GCTAATGATCTTCTTTCATTTTATGATTAGGCACTATAAGCATA
258 AAGAGACAAACATGGATTCTAG-TAATGA---TCTTTCATTTTATGAGTAAGCACTATAAACACA
* * * *
949758 TTCTCATCATTAGCATAAATGATATTGATGATTTTCTTTT-CATTGCAAATCTTTTCTTTGTCCT
319 TTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCA-TGAAAATCTTTTCTTTGCCCT
* * * * * * *
949822 ATTTTTCTCAAAATAAAAGTTTATCCCTT-AATAACACAAACATCGATTCTCGTAACAATCTCCA
383 ATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCA
*
949886 TTC-TTTCAAGATTGGGAACCAAAAA
448 TTCTTTTCAAGGTTGGGAACCAAAAA
* *** *
949911 CACATTCC-CTTATTAGGATACCCAACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTTTTTCC
1 CACATTCCTTTTATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCC
* * * * * * *
949975 CTCGTTTTTCATGGAATTAAAGTTTGTCTCTAAAATATGGC-AACATGAATACTCATACTAATCC
66 ATCGTTTTTCATAGAATCAAAGTTTATCTCTTAAATAAGACAAACATGAATACTCATACTAATCC
* * * * *
950039 CCATTCTTTT-AGGACT-AGGCAAC-ATAAACATAGTTTTCGCTTTAGGACACATGATATCGGTG
131 CCATTCTTTTCAGGA-TGAGGC-ACTATAAACATAGTCTTCTCATTAGGATACATGATACCGGTG
* * * * * *
950101 CTTTAGTTTCACAAGAAAGGCTTTTCTCCCACTAATTTACACTAAA-TCCAAG-TCGTGCCTCAC
194 CTTTAGTTTCACAAGAAAGGCTTTTTTCCCACCAATTT-TAGTAAAGTCTATGTTCGTGCCTCA-
* * * * *
950164 AAA-AGATAAGCATGGATTCTAGTAAAGATCTTTCA-TTTATGAGTAGGCACTATAAACACATTT
257 AAAGAGACAAACATGGATTCTAGTAATGATCTTTCATTTTATGAGTAAGCACTATAAACACATTC
* * * *** * *
950227 TTCTCATTAAGATAAATGATATTGGTGAAAGTCTTTTGCGTGAAAATCTCTTCTTTGCCCTATTT
322 TCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTT
* * * *
950292 TCCTAAAAATCAAAGTTCTTCCCTTAAATAAGATAAGCATCGATTCTCATAACAGTCTCCATTCT
387 TCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCT
* ***
950357 TTTCAAGGTTTGGAAATGAAAA
452 TTTCAAGGTTGGGAACCAAAAA
* * * * *
950379 CACATTCCCTTTATT---ATACATGACATTGATGCTTTAGTGTCTCAAGAAAA-CCTTTCATTCC
1 CACATTCCTTTTATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCC
* * * * * * * * *
950440 ATTGCTTTTGATAAAATCAAAGTTCACCTCTTAAATAAGACAAA-ATGAATACACGTACCAATCC
66 ATCGTTTTTCATAGAATCAAAGTTTATCTCTTAAATAAGACAAACATGAATACTCATACTAATCC
* * * *
950504 CCATTCTTTTCAGGATGAGACACTATAAACATTGTCCTCTCATTAGGATACACGATACCGGTGCT
131 CCATTCTTTTCAGGATGAGGCACTATAAACATAGTCTTCTCATTAGGATACATGATACCGGTGCT
* * **
950569 TTGATTTTC-CAAGATATTCTTTTTTCCCACCAATTTTAGTAAAGTCTATGTTCGTGCCTCAAAA
196 TT-AGTTTCACAAGAAAGGCTTTTTTCCCACCAATTTTAGTAAAGTCTATGTTCGTGCCTCAAAA
* * * * * *
950633 GAGGCAAACATGGATTCTAATAATGATCTTCTTTCATTTTATGATTAAGCACTGTAAATATATTC
260 GAGACAAACATGGATTCTAGTAATGA---TCTTTCATTTTATGAGTAAGCACTATAAACACATTC
*
950698 TCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCA-CAGAAATCTTTTCTTTGCCCTATT
322 TCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGA-AAATCTTTTCTTTGCCCTATT
* *
950762 TTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATTGATTCTCGTAACAATCTCCATTC
386 TTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTC
*
950827 TTTTCAAAGTTGGGAACCAAAAA
451 TTTTCAAGGTTGGGAACCAAAAA
* * ** *
950850 CACATTCCCTTCATTAGGATACATGACATTGATATTTTAGG-GTCGCAAGAAACGCTTTTCTTTC
1 CACATTCCTTTTATTAGGATACATGACATTGATGCTTT-GGTGTCGCAAGAAAAGCTTTTCTTTC
* * * * * *
950914 CAACATTTTTAATAGAATCAAAGATTACCTCTTAAATAAGACAAACATGAATATTCATACTAATC
65 CATCGTTTTTCATAGAATCAAAGTTTATCTCTTAAATAAGACAAACATGAATACTCATACTAATC
* *
950979 CCCATTCTTTTCAGGATGAGGCACCAT-AACGATAGTCTTCTCATTAGGATACACGATACCGGTG
130 CCCATTCTTTTCAGGATGAGGCACTATAAAC-ATAGTCTTCTCATTAGGATACATGATACCGGTG
** * * *
951043 CTTT-GATTTTGCAAGAAAGGCTTTTTTCCCACCAATTTTAATGAAGTCTATGTTTGTGCCTCAA
194 CTTTAG-TTTCACAAGAAAGGCTTTTTTCCCACCAATTTTAGTAAAGTCTATGTTCGTGCCTCAA
* * * *
951107 AAGAGACGAACATAGATTCTAGTAATGTTCTTATTTCATTTTATGATTAAGCACTATAAACACAT
258 AAGAGACAAACATGGATTCTAGTAATGATC---TTTCATTTTATGAGTAAGCACTATAAACACAT
** * * * * * * *
951172 TCTATTTATTAGCATAAAAGAAATTGATGATTTTCTTTTGCTTGGAAATC--TT-TTTGTCCTAT
320 TCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTAT
* * * * * * * *
951234 TTTTCTTAAACTAAAAGTTCATCCCTTGAATAACATAAACATCGATTCTTGTAACAGTCTCCATT
385 TTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATT
951299 CTTTTC-AGGATTGGGAACCAAAAA
450 CTTTTCAAGG-TTGGGAACCAAAAA
* * * * *
951323 CATATTCCCTTTTACTAGGATACACGACA-TGATACTTTGGTGTCGCGAGAAAAGCTTTT-TTTC
1 CACATT-CCTTTTATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTC
* * * * * *
951386 CATCATTTTTCATAGAATTAAAGTTTGTCTCTAAAATAAGGCAAACATGAATACTCGTACTAA-C
65 CATCGTTTTTCATAGAATCAAAGTTTATCTCTTAAATAAGACAAACATGAATACTCATACTAATC
* * * *
951450 TCCATTCTTTTTAGGATTAGGCACCATAAACATAGTC-TCT-ATTAGGATACATGA
130 CCCATTCTTTTCAGGATGAGGCACTATAAACATAGTCTTCTCATTAGGATACATGA
951504 AAGCTCAAGG
Statistics
Matches: 3322, Mismatches: 548, Indels: 180
0.82 0.14 0.04
Matches are distributed among these distances:
465 71 0.02
466 198 0.06
467 76 0.02
468 25 0.01
469 20 0.01
470 68 0.02
471 726 0.22
472 342 0.10
473 517 0.16
474 460 0.14
475 570 0.17
476 249 0.07
ACGTcount: A:0.32, C:0.19, G:0.14, T:0.36
Consensus pattern (473 bp):
CACATTCCTTTTATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCC
ATCGTTTTTCATAGAATCAAAGTTTATCTCTTAAATAAGACAAACATGAATACTCATACTAATCC
CCATTCTTTTCAGGATGAGGCACTATAAACATAGTCTTCTCATTAGGATACATGATACCGGTGCT
TTAGTTTCACAAGAAAGGCTTTTTTCCCACCAATTTTAGTAAAGTCTATGTTCGTGCCTCAAAAG
AGACAAACATGGATTCTAGTAATGATCTTTCATTTTATGAGTAAGCACTATAAACACATTCTCCT
CATTAGGATAAATGATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCT
TAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTC
AAGGTTGGGAACCAAAAA
Found at i:952246 original size:19 final size:20
Alignment explanation
Indices: 952203--952255 Score: 72
Period size: 19 Copynumber: 2.7 Consensus size: 20
952193 GTTACAAGCA
* *
952203 ATGTATCGATACAATTCATC
1 ATGTATCGATACAAGTCACC
952223 ATGTATCGATACAAGT-ACC
1 ATGTATCGATACAAGTCACC
*
952242 ATGTATTGATACAA
1 ATGTATCGATACAA
952256 ACAGTGGCAG
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
19 15 0.50
20 15 0.50
ACGTcount: A:0.38, C:0.17, G:0.13, T:0.32
Consensus pattern (20 bp):
ATGTATCGATACAAGTCACC
Found at i:952304 original size:18 final size:19
Alignment explanation
Indices: 952281--952337 Score: 71
Period size: 19 Copynumber: 3.1 Consensus size: 19
952271 TACTGCCAGT
952281 TTCATGTATAGATACAA-G
1 TTCATGTATAGATACAATG
*
952299 TTCATGTATTGATACAATG
1 TTCATGTATAGATACAATG
** *
952318 AACATGTATCGATACAATG
1 TTCATGTATAGATACAATG
952337 T
1 T
952338 ATCGATACAA
Statistics
Matches: 33, Mismatches: 5, Indels: 1
0.85 0.13 0.03
Matches are distributed among these distances:
18 16 0.48
19 17 0.52
ACGTcount: A:0.37, C:0.12, G:0.16, T:0.35
Consensus pattern (19 bp):
TTCATGTATAGATACAATG
Found at i:952339 original size:13 final size:13
Alignment explanation
Indices: 952321--952347 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
952311 TACAATGAAC
952321 ATGTATCGATACA
1 ATGTATCGATACA
952334 ATGTATCGATACA
1 ATGTATCGATACA
952347 A
1 A
952348 AGCATAATGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.41, C:0.15, G:0.15, T:0.30
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:952981 original size:50 final size:49
Alignment explanation
Indices: 952922--953018 Score: 142
Period size: 50 Copynumber: 2.0 Consensus size: 49
952912 AATGCTTACA
* *
952922 AAAAATTTCTCCCCCTTAAGCGGTTAAAAAGAGTTTTTC-CCCTCCCCTAT
1 AAAAATTTCTCCCCCTTAAACGGTT--AAAGAGTTTTTCTCCCCCCCCTAT
*
952972 AAAAATTTCTCCCCTTTAAACGGTTAAAGAGTTTTTCTCCCCCCCCT
1 AAAAATTTCTCCCCCTTAAACGGTTAAAGAGTTTTTCTCCCCCCCCT
953019 TAATCAAAGC
Statistics
Matches: 43, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
48 12 0.28
49 8 0.19
50 23 0.53
ACGTcount: A:0.27, C:0.31, G:0.09, T:0.33
Consensus pattern (49 bp):
AAAAATTTCTCCCCCTTAAACGGTTAAAGAGTTTTTCTCCCCCCCCTAT
Done.