Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold1764
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 74514
ACGTcount: A:0.34, C:0.17, G:0.19, T:0.31
Found at i:961 original size:476 final size:473
Alignment explanation
Indices: 1--2407 Score: 2898
Period size: 476 Copynumber: 5.1 Consensus size: 473
* * ** *
1 CCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTAGGTATATGGTGCCTAAAACTAAAAGGA
1 CCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTAAAAAGA
* * *
66 ATGAGGATTAGTTTGAGTATTAATGTTTGGCTTATCTAAGAGACAAACGTTGAATCTATCAAAAA
66 ATGAGGATTAGTATGAGTATTAATGTTTGGCTTATTTAAGAGACAAACGTTGATTCTATCAAAAA
* ** * *
131 TGACACGAACAAAAGCTTTTCTTGAGACACCAAAGCATCAATATCGGGTATCCTAACAAAGGCAA
131 CGACGGGAAGAAAAGCTTTTCTTGAGACACCAAAGCATCAATGTCGGGTATCCTAACAAAGGCAA
* * * * *
196 TGTGTTTTGGCTTCCAAATCTTGAAATGAAAGAAGACTGTTAGGAGAATCCATGCCTGTCTTATT
196 TGTGTTTTGGCTTCCCAATCTTGAAAAGAAAGGAGACTGTTAGGAGAATCGATGCTTGTCTTATT
* *
261 CAAGGGATGAACTTTCATTTTAAGGAAAATAGGGCGAAGAAAAGATTTCTAGGC-AAAAGAAAAA
261 CAAGGGATGAACTTTCATTTTAAGGAAAATAGGGC-AAGAAAAGATTTCCAAGCAAAAAGAAAAA
* ** * * *
325 CTTCAATGTCTTTTGTCCTAAAAAGGAGAATGTGTTTGTAGTGCTTTTTCAGAAAAAGAATGAAG
325 CTTCAATGT-ATTTGTCCT-AATCGGAGAATGTGTTTATAGTGCTTTATCA-AAAAGGAATGAAG
* * * **
390 ATCGTTACAAGAATCCATATTTGTCTCATTTGAGGCACGAACTTAGACTTTACAATGATTGGTGG
387 ATCATTACTAGAATCCATATTTGTCTCATTTGTGGCACGAACTTAGACTTTACAAAAATTGGTGG
*
455 GAAGAAAGCCTTTGTTGTGAAA
452 GAAGAAAGCCTTTGTTGCGAAA
*
477 CCAAAGCATCAATATCGTGTATGCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTAAAAAGA
1 CCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTAAAAAGA
* * *
542 ATGAGGATTAGTTTGAGTATTAATGTTTGGCTTATTCAAGAGACAAACGTTGATTCTATAAAAAA
66 ATGAGGATTAGTATGAGTATTAATGTTTGGCTTATTTAAGAGACAAACGTTGATTCTATCAAAAA
* * * *
607 CAATGGGAAGAAAAGCTTTTCTTGAGACAACAAAGTATCAATGTCGGGTATCCTAACAAAGGCAA
131 CGACGGGAAGAAAAGCTTTTCTTGAGACACCAAAGCATCAATGTCGGGTATCCTAACAAAGGCAA
* * *
672 TGTGTTTTAGCTTCCCAATCTCGAAAAGAAAGGAGACTGTTACGAGAATCGATGCTTGTCTTATT
196 TGTGTTTTGGCTTCCCAATCTTGAAAAGAAAGGAGACTGTTAGGAGAATCGATGCTTGTCTTATT
*** * * * ** * *
737 TTGGGGATGAACTCTAATTTTAAGGATAATTTGGCAAGGCAAAGATTTCCAAGCAAAAAGAAAAT
261 CAAGGGATGAACTTTCATTTTAAGGAAAATAGGGCAA-GAAAAGATTTCCAAGCAAAAAGAAAAA
* * * *** * * *
802 CGTCAAAG-ATTTATCCTAATGCGGAGAATCCATTTATAGTTCCTTATCATAAAGGAATGAAGAT
325 CTTCAATGTATTTGTCCTAAT-CGGAGAATGTGTTTATAGTGCTTTATCAAAAAGGAATGAAGAT
* * * * ***
866 CATTACTAGAATCTATGTTTGTCTCGTTTGTGGCACGAACTTAGAATTTACAAAAAATTGGAAAG
389 CATTACTAGAATCCATATTTGTCTCATTTGTGGCACGAACTTAGACTTTAC-AAAAATTGGTGGG
*
931 AAGAAAGCCTTTGTTGTGAAA
453 AAGAAAGCCTTTGTTGCGAAA
* * * * *
952 CCAAAAGCATCAATATCGTGTATCCTAATGAGAAGACTAAGTTTATGGTGGCAAATCATGAAAAG
1 CC-AAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTAAAAAG
* * * * * * * * *
1017 ATTG-GGATTAGTAAGTGTATTCATATTTGTCTTATTTGAGAGACTAACTTTGATTCTATCAAAA
65 AATGAGGATTAGTATGAGTATTAATGTTTGGCTTATTTAAGAGACAAACGTTGATTCTATCAAAA
* * *** *
1081 ACGGCAGGAAGAAAAAGCTTTTCTTGAGACACCAAAGCATCAATGTTATGTATCCTAACGAAGGC
130 ACGACGGGAAG-AAAAGCTTTTCTTGAGACACCAAAGCATCAATGTCGGGTATCCTAACAAAGGC
* *
1146 AATGTGTTTTGGCTTCCCAATCTTGAAAATAATGGAGACTGTTAGGAGAATCGATGCTTGTCTTA
194 AATGTGTTTTGGCTTCCCAATCTTGAAAAGAAAGGAGACTGTTAGGAGAATCGATGCTTGTCTTA
*
1211 TTCAAGGGATGAACTTTCATTTTAAGGAAAATAGGGCGAAGAAAAGATTTCC-AGGAAAAAGAAA
259 TTCAAGGGATGAACTTTCATTTTAAGGAAAATAGGGC-AAGAAAAGATTTCCAAGCAAAAAG-AA
* * *
1275 AAAATTCAATGTGTTTTGTCCTAATCAAGG-GAATGTGTTTATAGTGCTTTATCAAAAAAAGAAT
322 AAACTTCAATGT-ATTTGTCCTAATC--GGAGAATGTGTTTATAGTGCTTTATC-AAAAAGGAAT
* * *
1339 GAAGATCATTACTAGAATCCATATTTGTCTCATTTCTAGCAC-AAGCTTAGACTTTACAACAATT
383 GAAGATCATTACTAGAATCCATATTTGTCTCATTTGTGGCACGAA-CTTAGACTTTACAAAAATT
* *
1403 GGTGGGAAGAAAATCCGTTGTTGCGAAA
447 GGTGGGAAG-AAAGCCTTTGTTGCGAAA
** * * *
1431 CCAAATTATC-ATATCGTCTATCCTAATGAGAAGGCTATG-TTACGGTGCCTAATCCTAAAAAGA
1 CCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTAAAAAGA
* * *
1494 ATAAGGATTAGCATGAGTATTAATGTTTGGCTTATTTAAGAGACAAATGTTGATTCTATC-AAAA
66 ATGAGGATTAGTATGAGTATTAATGTTTGGCTTATTTAAGAGACAAACGTTGATTCTATCAAAAA
* * * * **
1558 CAATGGGAAGAAAAGCTTTTCTTCAGACACCAAAGCATCAACGTTAGGTATCCTAACAAAGGCAA
131 CGACGGGAAGAAAAGCTTTTCTTGAGACACCAAAGCATCAATGTCGGGTATCCTAACAAAGGCAA
* *
1623 TGTGTTTTTGGCTTCCCAATCTCGAAAAGAAAGGAGACTGTTACGAGAATCGATGCTTGTCTTAT
196 TGTG-TTTTGGCTTCCCAATCTTGAAAAGAAAGGAGACTGTTAGGAGAATCGATGCTTGTCTTAT
* * * * ** * *
1688 TTAGGGGATGAACTTTGATTTTAAGGATAATTTGGCAAGGCAAAGATTTCCATGC-AAAAGAAAA
260 TCAAGGGATGAACTTTCATTTTAAGGAAAATAGGGCAA-GAAAAGATTTCCAAGCAAAAAGAAAA
* * ** * * * *
1752 TCGTCAATGTCATTTACCCTAATGCGGAGAATCTGTTTGTAGTGCCTTATCACAAAAGGAAGGAA
324 ACTTCAATGT-ATTTGTCCTAAT-CGGAGAATGTGTTTATAGTGCTTTATCA-AAAAGGAATGAA
* * * * **
1817 GATCATTACTAGAATCTATGTTTGTCTCGTTTGTGGCACGAACTTAGAATTTACAAAAATTGGAA
386 GATCATTACTAGAATCCATATTTGTCTCATTTGTGGCACGAACTTAGACTTTACAAAAATTGGTG
* * *
1882 AGAAGAAAACCTTTGTTGCAAAA
451 GGAAGAAAGCCTTTGTTGCGAAA
* * * * ** *
1905 TCAAAGCATCAATATCGTGTATCCTAATGAGAAGACCATGTTTATGGTGCCAAATTGC-GGAAAT
1 CCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAA-TCCTAAAAAG
* * * * * * * * * *
1969 ATTGGGGATTAGTAAGTGTATTCATATTTGTCTTATTTGAGAGACTAACTTTGATTCTATCAAAA
65 AATGAGGATTAGTATGAGTATTAATGTTTGGCTTATTTAAGAGACAAACGTTGATTCTATCAAAA
* * *
2034 ACGGCGAGAAGAAAAGCTTTTTCTTGAGACACCAAAGCATCAATGTCGTGTATCCTAACAAAGGC
130 ACGACGGGAAGAAAAGC-TTTTCTTGAGACACCAAAGCATCAATGTCGGGTATCCTAACAAAGGC
*
2099 AATGTGTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTGTTAGGAGAATCGATGCTTGTCTTA
194 AATGTGTTTTGGCTTCCCAATCTTGAAAAGAAAGGAGACTGTTAGGAGAATCGATGCTTGTCTTA
* * *
2164 TTCAAGGGATGAACTTTTATTTTAAGGAAAATAGGGTGAAGAAAAGATTTCC-AG-AAAAAAAAA
259 TTCAAGGGATGAACTTTCATTTTAAGGAAAATAGGG-CAAGAAAAGATTTCCAAGCAAAAAGAAA
* *
2227 AACTTCAATGTCTTTGTCCTAATCAGGAGAATGTGTTTATAGTGCTTTATCAGAAAAAGG-AGGA
323 AACTTCAATGTATTTGTCCTAATC-GGAGAATGTGTTTATAGTGCTTTATC--AAAAAGGAATGA
* * * *
2291 AGATCATTACTAGAATACATACTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAACAATTGG
385 AGATCATTACTAGAATCCATATTTGTCTCATTTGTGGCACGAACTTAGACTTTACAAA-AATTGG
2356 TGGGAAGAAAGCCTTTGTTGCGAAA
449 TGGGAAGAAAGCCTTTGTTGCGAAA
*
2381 CCAAAGCATCAATGTCGTGTATCCTAA
1 CCAAAGCATCAATATCGTGTATCCTAA
2408 CAAAGGCAAT
Statistics
Matches: 1624, Mismatches: 273, Indels: 68
0.83 0.14 0.03
Matches are distributed among these distances:
474 85 0.05
475 400 0.25
476 759 0.47
477 207 0.13
478 98 0.06
479 75 0.05
ACGTcount: A:0.36, C:0.14, G:0.20, T:0.30
Consensus pattern (473 bp):
CCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTAAAAAGA
ATGAGGATTAGTATGAGTATTAATGTTTGGCTTATTTAAGAGACAAACGTTGATTCTATCAAAAA
CGACGGGAAGAAAAGCTTTTCTTGAGACACCAAAGCATCAATGTCGGGTATCCTAACAAAGGCAA
TGTGTTTTGGCTTCCCAATCTTGAAAAGAAAGGAGACTGTTAGGAGAATCGATGCTTGTCTTATT
CAAGGGATGAACTTTCATTTTAAGGAAAATAGGGCAAGAAAAGATTTCCAAGCAAAAAGAAAAAC
TTCAATGTATTTGTCCTAATCGGAGAATGTGTTTATAGTGCTTTATCAAAAAGGAATGAAGATCA
TTACTAGAATCCATATTTGTCTCATTTGTGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAG
AAAGCCTTTGTTGCGAAA
Found at i:2124 original size:953 final size:950
Alignment explanation
Indices: 1--2407 Score: 3631
Period size: 952 Copynumber: 2.5 Consensus size: 950
* * *
1 CCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTAGGTATATGGTGCCTAAA-ACTAAAAGG
1 CCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTAAGTTTATGGTGCC-AAATACGAAAA-G
* * ** * * * * * * * * *
65 AATGAGGATTAGTTTGAGTATTAATGTTTGGCTTATCTAAGAGACAAACGTTGAATCTATCAAAA
64 ATTGGGGATTAGTAAGTGTATTCATATTTGTCTTATTTGAGAGACTAACTTTGATTCTATCAAAA
* * * * *
130 ATGACACGAACAAAAGCTTTTCTTGAGACACCAAAGCATCAATATCGGGTATCCTAACAAAGGCA
129 ACGGCACGAAGAAAAGCTTTTCTTGAGACACCAAAGCATCAATGTCGTGTATCCTAACAAAGGCA
* * * * *
195 ATGTGTTTTGGCTTCCAAATCTTG-AAATGAAAGAAGACTGTTAGGAGAATCCATGCCTGTCTTA
194 ATGTGTTTTGGCTTCCCAATCTTGAAAAT-AATGGAGACTGTTAGGAGAATCGATGCTTGTCTTA
* *
259 TTCAAGGGATGAACTTTCATTTTAAGGAAAATAGGGCGAAGAAAAGATTTCTAGGCAAAAG-AAA
258 TTCAAGGGATGAACTTTCATTTTAAGGAAAATAGGGCGAAGAAAAGATTTCCAGGAAAAAGAAAA
* * *
323 AACTTCAATGTCTTTTGTCCTAA-AAAGGAGAATGTGTTTGTAGTGCTTTTTCAGAAAAAGAATG
323 AACTTCAATGT-TTTTGTCCTAATCAAGGAGAATGTGTTTATAGTGCTTTATCAGAAAAAGAATG
* * **
387 AAGATCGTTACAAGAATCCATATTTGTCTCATTTGAGGCACGAACTTAGACTTTACAATGATTGG
387 AAGATCATTACTAGAATCCATATTTGTCTCATTTGAGGCAC-AACTTAGACTTTACAACAATTGG
* * *
452 TGGGAAGAAAGCCTTTGTTGTGAAACCAAAGCATCAATATCGTGTATGCTAATGAGAAGACTATG
451 TGGGAAGAAAGCCTTTGTTGCGAAACCAAAGCATCAATATCGTCTATCCTAATGAGAAGACTATG
* * **
517 TTTATGGTGCCTAATCCTAAAAAGAATGAGGATTAGTTTGAGTATTAATGTTTGGCTTATTCAAG
516 TTTACGGTGCCTAATCCTAAAAAGAATAAGGATTAGCATGAGTATTAATGTTTGGCTTATTCAAG
* *
582 AGACAAACGTTGATTCTATAAAAAACAATGGGAAGAAAAGCTTTTCTTGAGACAACAAAGTATCA
581 AGACAAACGTTGATTCTATAAAAAACAATGGGAAGAAAAGCTTTTCTTCAGACAACAAAGCATCA
* *
647 ATGTCGGGTATCCTAACAAAGGCAATGTGTTTTAGCTTCCCAATCTCGAAAAGAAAGGAGACTGT
646 ACGTCAGGTATCCTAACAAAGGCAATGTGTTTTAGCTTCCCAATCTCGAAAAGAAAGGAGACTGT
*
712 TACGAGAATCGATGCTTGTCTTATTTTGGGGATGAACTCTAATTTTAAGGATAATTTGGCAAGGC
711 TACGAGAATCGATGCTTGTCTTATTTAGGGGATGAACTCTAATTTTAAGGATAATTTGGCAAGGC
*
777 AAAGATTTCCAAGCAAAAAGAAAATCGTCAAAGATTTATCCTAATGCGGAGAATCCATTTATAGT
776 AAAGATTTCCAAGCAAAAAGAAAATCGTCAAAGATTTACCCTAATGCGGAGAATCCATTTATAGT
* * *
842 TCCTTATCATAAAGGAATGAAGATCATTACTAGAATCTATGTTTGTCTCGTTTGTGGCACGAACT
841 GCCTTATCAAAAAGGAAGGAAGATCATTACTAGAATCTATGTTTGTCTCGTTTGTGGCACGAACT
* **
907 TAGAATTTACAAAAAATTGGAAAGAAGAAAGCCTTTGTTGTGAAA
906 TAGAATTTACAAAAAATTGGAAAGAAGAAAACCTTTGTTGCAAAA
* *
952 CCAAAAGCATCAATATCGTGTATCCTAATGAGAAGACTAAGTTTATGGTGGCAAATCATGAAAAG
1 CC-AAAGCATCAATATCGTGTATCCTAATGAGAAGACTAAGTTTATGGTGCCAAAT-ACGAAAAG
1017 ATT-GGGATTAGTAAGTGTATTCATATTTGTCTTATTTGAGAGACTAACTTTGATTCTATCAAAA
64 ATTGGGGATTAGTAAGTGTATTCATATTTGTCTTATTTGAGAGACTAACTTTGATTCTATCAAAA
* ** *
1081 ACGGCAGGAAGAAAAAGCTTTTCTTGAGACACCAAAGCATCAATGTTATGTATCCTAACGAAGGC
129 ACGGCACGAAG-AAAAGCTTTTCTTGAGACACCAAAGCATCAATGTCGTGTATCCTAACAAAGGC
1146 AATGTGTTTTGGCTTCCCAATCTTGAAAATAATGGAGACTGTTAGGAGAATCGATGCTTGTCTTA
193 AATGTGTTTTGGCTTCCCAATCTTGAAAATAATGGAGACTGTTAGGAGAATCGATGCTTGTCTTA
1211 TTCAAGGGATGAACTTTCATTTTAAGGAAAATAGGGCGAAGAAAAGATTTCCAGGAAAAAGAAAA
258 TTCAAGGGATGAACTTTCATTTTAAGGAAAATAGGGCGAAGAAAAGATTTCCAGGAAAAAGAAAA
* *
1276 AAATTCAATGTGTTTTGTCCTAATCAAGG-GAATGTGTTTATAGTGCTTTATCAAAAAAAGAATG
323 AACTTCAATGT-TTTTGTCCTAATCAAGGAGAATGTGTTTATAGTGCTTTATCAGAAAAAGAATG
*
1340 AAGATCATTACTAGAATCCATATTTGTCTCATTTCTA-GCACAAGCTTAGACTTTACAACAATTG
387 AAGATCATTACTAGAATCCATATTTGTCTCATTT-GAGGCACAA-CTTAGACTTTACAACAATTG
* * ** *
1404 GTGGGAAGAAAATCCGTTGTTGCGAAACCAAATTATC-ATATCGTCTATCCTAATGAGAAGGCTA
450 GTGGGAAG-AAAGCCTTTGTTGCGAAACCAAAGCATCAATATCGTCTATCCTAATGAGAAGACTA
*
1468 TG-TTACGGTGCCTAATCCTAAAAAGAATAAGGATTAGCATGAGTATTAATGTTTGGCTTATTTA
514 TGTTTACGGTGCCTAATCCTAAAAAGAATAAGGATTAGCATGAGTATTAATGTTTGGCTTATTCA
* * *
1532 AGAGACAAATGTTGATTCTAT-CAAAACAATGGGAAGAAAAGCTTTTCTTCAGACACCAAAGCAT
579 AGAGACAAACGTTGATTCTATAAAAAACAATGGGAAGAAAAGCTTTTCTTCAGACAACAAAGCAT
* *
1596 CAACGTTAGGTATCCTAACAAAGGCAATGTGTTTTTGGCTTCCCAATCTCGAAAAGAAAGGAGAC
644 CAACGTCAGGTATCCTAACAAAGGCAATGTG-TTTTAGCTTCCCAATCTCGAAAAGAAAGGAGAC
* *
1661 TGTTACGAGAATCGATGCTTGTCTTATTTAGGGGATGAACTTTGATTTTAAGGATAATTTGGCAA
708 TGTTACGAGAATCGATGCTTGTCTTATTTAGGGGATGAACTCTAATTTTAAGGATAATTTGGCAA
* * **
1726 GGCAAAGATTTCCATGC-AAAAGAAAATCGTCAATGTCATTTACCCTAATGCGGAGAATCTGTTT
773 GGCAAAGATTTCCAAGCAAAAAGAAAATCGTCAAAG--ATTTACCCTAATGCGGAGAATCCATTT
*
1790 GTAGTGCCTTATCACAAAAGGAAGGAAGATCATTACTAGAATCTATGTTTGTCTCGTTTGTGGCA
836 ATAGTGCCTTATCA-AAAAGGAAGGAAGATCATTACTAGAATCTATGTTTGTCTCGTTTGTGGCA
1855 CGAACTTAGAATTTAC-AAAAATTGGAAAGAAGAAAACCTTTGTTGCAAAA
900 CGAACTTAGAATTTACAAAAAATTGGAAAGAAGAAAACCTTTGTTGCAAAA
* * * * * *
1905 TCAAAGCATCAATATCGTGTATCCTAATGAGAAGACCATGTTTATGGTGCCAAATTGCGGAAATA
1 CCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTAAGTTTATGGTGCCAAA-TACGAAAAGA
1970 TTGGGGATTAGTAAGTGTATTCATATTTGTCTTATTTGAGAGACTAACTTTGATTCTATCAAAAA
65 TTGGGGATTAGTAAGTGTATTCATATTTGTCTTATTTGAGAGACTAACTTTGATTCTATCAAAAA
2035 CGGCGA-GAAGAAAAGCTTTTTCTTGAGACACCAAAGCATCAATGTCGTGTATCCTAACAAAGGC
130 CGGC-ACGAAGAAAAGC-TTTTCTTGAGACACCAAAGCATCAATGTCGTGTATCCTAACAAAGGC
*
2099 AATGTGTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTGTTAGGAGAATCGATGCTTGTCTTA
193 AATGTGTTTTGGCTTCCCAATCTTGAAAATAATGGAGACTGTTAGGAGAATCGATGCTTGTCTTA
* *
2164 TTCAAGGGATGAACTTTTATTTTAAGGAAAATAGGGTGAAGAAAAGATTTCCA-GAAAAA-AAAA
258 TTCAAGGGATGAACTTTCATTTTAAGGAAAATAGGGCGAAGAAAAGATTTCCAGGAAAAAGAAAA
* * *
2227 AACTTCAATGTCTTTGTCCTAATC-AGGAGAATGTGTTTATAGTGCTTTATCAGAAAAAGGAGGA
323 AACTTCAATGTTTTTGTCCTAATCAAGGAGAATGTGTTTATAGTGCTTTATCAGAAAAAGAATGA
* * *
2291 AGATCATTACTAGAATACATACTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAACAATTGG
388 AGATCATTACTAGAATCCATATTTGTCTCATTTGAGGCA-CAACTTAGACTTTAC-AACAATTGG
* *
2356 TGGGAAGAAAGCCTTTGTTGCGAAACCAAAGCATCAATGTCGTGTATCCTAA
451 TGGGAAGAAAGCCTTTGTTGCGAAACCAAAGCATCAATATCGTCTATCCTAA
2408 CAAAGGCAAT
Statistics
Matches: 1322, Mismatches: 111, Indels: 46
0.89 0.08 0.03
Matches are distributed among these distances:
949 4 0.00
950 115 0.09
951 191 0.14
952 468 0.35
953 451 0.34
954 93 0.07
ACGTcount: A:0.36, C:0.14, G:0.20, T:0.30
Consensus pattern (950 bp):
CCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTAAGTTTATGGTGCCAAATACGAAAAGAT
TGGGGATTAGTAAGTGTATTCATATTTGTCTTATTTGAGAGACTAACTTTGATTCTATCAAAAAC
GGCACGAAGAAAAGCTTTTCTTGAGACACCAAAGCATCAATGTCGTGTATCCTAACAAAGGCAAT
GTGTTTTGGCTTCCCAATCTTGAAAATAATGGAGACTGTTAGGAGAATCGATGCTTGTCTTATTC
AAGGGATGAACTTTCATTTTAAGGAAAATAGGGCGAAGAAAAGATTTCCAGGAAAAAGAAAAAAC
TTCAATGTTTTTGTCCTAATCAAGGAGAATGTGTTTATAGTGCTTTATCAGAAAAAGAATGAAGA
TCATTACTAGAATCCATATTTGTCTCATTTGAGGCACAACTTAGACTTTACAACAATTGGTGGGA
AGAAAGCCTTTGTTGCGAAACCAAAGCATCAATATCGTCTATCCTAATGAGAAGACTATGTTTAC
GGTGCCTAATCCTAAAAAGAATAAGGATTAGCATGAGTATTAATGTTTGGCTTATTCAAGAGACA
AACGTTGATTCTATAAAAAACAATGGGAAGAAAAGCTTTTCTTCAGACAACAAAGCATCAACGTC
AGGTATCCTAACAAAGGCAATGTGTTTTAGCTTCCCAATCTCGAAAAGAAAGGAGACTGTTACGA
GAATCGATGCTTGTCTTATTTAGGGGATGAACTCTAATTTTAAGGATAATTTGGCAAGGCAAAGA
TTTCCAAGCAAAAAGAAAATCGTCAAAGATTTACCCTAATGCGGAGAATCCATTTATAGTGCCTT
ATCAAAAAGGAAGGAAGATCATTACTAGAATCTATGTTTGTCTCGTTTGTGGCACGAACTTAGAA
TTTACAAAAAATTGGAAAGAAGAAAACCTTTGTTGCAAAA
Found at i:2655 original size:793 final size:793
Alignment explanation
Indices: 1586--3173 Score: 2194
Period size: 793 Copynumber: 2.0 Consensus size: 793
1576 TTCTTCAGAC
1586 ACCAAAGCATCAACGTTAGGTATCCTAACAAAGGCAATGTGTTTTTGGCTTCCCAATCTCGAAAA
1 ACCAAAGCATCAACGTTAGGTATCCTAACAAAGGCAATGTGTTTTTGGCTTCCCAATCTCGAAAA
* * * * * *
1651 GAAAGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAGGGGATGAACTTTGATTTTAAGGAT
66 GAAAGGAGACTGTTACGAGAATCGATGCTTGCCTTATTCAAGGGATGAACTTTCATTTTAAGAAA
** * * *
1716 AATTTGGCAAGGCAAAGATTTCCATGCAAAAGAAAATCGTCAATGTCATTTACCCTAATGCGGAG
131 AATAGGGCAAGGAAAAGATTTCCATGCAAAAGAAAAACGTCAATGTCATTTACCCTAATGAGGAG
* * ** *
1781 AATCTGTTTGTAGTGCCTTATCACAAAAGGAAGGAAGATCATTACTAGAATCTATGTTTGTCTCG
196 AATCTGTTTATAGTGCCTTATCACAAAAAGAAGGAAGATCATTACTAGAATCTATACTTGTCTCA
* * * *
1846 TTTGTGGCACGAACTTAGAATTTACAAAAATTGGAAAGAAGAAAA-CCTTTGTTGCAAAATCAAA
261 ATTGAGGCACGAACTTAGAATTTACAAAAATTGGAAAGAAGAAAAGCCGTTGTTGCAAAACCAAA
* ** * ** * * **
1910 GCATCAATATCGTGTATCCTAATGAGAAGACCATGTTTATGGTGCCAAATTGC-GGAAATATTGG
326 GCATCAATATCGTGTATCCTAATAAGAAGAAAATGTTTATGGTGCCAAA-TCCTAAAAAGAATAA
* * * * * *
1974 GGATTAG-TAAGTGTATTCATATTTGTCTTATTTGAGAGACTAACT-TTGATTCTATCAAAAACG
390 GGATTAGCT-AGAGTATTAATATTTGGCTTATTTAAGAGAC-AAATGTTGATTCTATCAAAAACA
* * * *
2037 GCGAGAAGAAAAGCTTTTTCTTGAGACACCAAAGCATCAATG-TCGTGTATCCTAACAAAGGCAA
453 ACGAGAAGAAAAGC-TTTTCTTCAGACACCAAAGCATCAACGTTAG-GTATCCTAACAAAGGCAA
*
2101 TGTGTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTGTTAGGAGAATCGATGCTTGTCTTATT
516 TGTGTTTTGGCTTCCCAATCTTGAAAAGAAAGGAGACTGTTAGGAGAATCGATGCTTGTCTTATT
* *
2166 CAAGGGATGAACTTTTATTTTAAGGAAAATAGGGTGAA-GAAAAGATTTCC-AGAAAAAAAAAAA
581 CAAGGGATAAACTTTCA-TTTAAGGAAAATAGGGTGAACG-AAAGATTTCCAAGAAAAAAAAAAA
* *
2229 CTTCAATGTC-TTTGTCCTAATCAGGAGAATGTGTTTATAGTGCTTTATCAGAAAAAGGAGGAAG
644 CTTCAATGTCTTTTGTCCTAAGCA-GAGAATGTGTTTATAGTGCTTTATCAGAAAAAGAAGGAAG
* *
2293 ATCATTACTAGAATACATACTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAACAATTGGTG
708 ATCATTACTAGAATACATACTTGTCTCATTTGAGGCACGAACTTAGACCTTAC-AACAATTGGTG
*
2358 GGAAGAAAGCCTTTGTTGCGAA
772 GGAAGAAAGCCTTTGTTGCAAA
* * *
2380 ACCAAAGCATCAATG-TCGTGTATCCTAACAAAGGCAATGTG-TTTTGGCTTCCCAATCTTGAAA
1 ACCAAAGCATCAACGTTAG-GTATCCTAACAAAGGCAATGTGTTTTTGGCTTCCCAATCTCGAAA
* *
2443 AGAATGGAGACTGTTAGGAGAATCGATGCTTGCCTTATTCAAGGGATGAACTTTCATTTTAAGAA
65 AGAAAGGAGACTGTTACGAGAATCGATGCTTGCCTTATTCAAGGGATGAACTTTCATTTTAAGAA
* * *
2508 AAATAGGGCGAA-GAAAAGATTTCCATGCAAAAGAAAAACTTCAATGTCTTTTATCCTAATGAGG
130 AAATAGGGC-AAGGAAAAGATTTCCATGCAAAAGAAAAACGTCAATGTCATTTACCCTAATGAGG
* * *
2572 AGAATGTGTTTATATTGCTTTATC-CGAAAAAGAAGGAAGATCATTACTAGAATAC-ATACTTGT
194 AGAATCTGTTTATAGTGCCTTATCAC-AAAAAGAAGGAAGATCATTACTAGAAT-CTATACTTGT
* * ** *** **
2635 CTCAATTGAGGCATGAACTTAGACTTTACAACGATTGGTGGGAAGAAAAGCCGTTGTTGTGAAAC
257 CTCAATTGAGGCACGAACTTAGAATTTACAAAAATTGGAAAGAAGAAAAGCCGTTGTTGCAAAAC
* * *
2700 CAAAGTATCAATATCGTGTATCCTATTAAGAAGAAAATGTTTATGGTGCCTAATCCTAAAAAGAA
322 CAAAGCATCAATATCGTGTATCCTAATAAGAAGAAAATGTTTATGGTGCCAAATCCTAAAAAGAA
* * *
2765 TAAGGATTAGCTTGAGTATTAATGTTTGGCTTGTTTAAGAGACAAATGTTGATTCTATCAAAAAC
387 TAAGGATTAGCTAGAGTATTAATATTTGGCTTATTTAAGAGACAAATGTTGATTCTATCAAAAAC
* *
2830 AATGGGAAGAAAAGCTTTTCTTCAGACACCAAAGCATCAACGTTAGGTATCCTAACAAAGGCAAT
452 AACGAGAAGAAAAGCTTTTCTTCAGACACCAAAGCATCAACGTTAGGTATCCTAACAAAGGCAAT
*
2895 GTGTTTTGGCTTCCCAATCTTGAAAAGAAAGGAGACTGTTAGGAGAATCGATGCTTGTCTTTTTC
517 GTGTTTTGGCTTCCCAATCTTGAAAAGAAAGGAGACTGTTAGGAGAATCGATGCTTGTCTTATTC
* *
2960 AAGGGATAAACTTTCATTTAAGGAAAATAGGGTGAACGAAAGATTTCCAAGCAAAAGAAAAACTT
582 AAGGGATAAACTTTCATTTAAGGAAAATAGGGTGAACGAAAGATTTCCAAGAAAAAAAAAAACTT
* * *
3025 CAATGTCTTTTGTCCTAAGGAGAGAATGTGTTTGTAGTGCTTTATCAGAAAAAGAATGAAGATCA
647 CAATGTCTTTTGTCCTAAGCAGAGAATGTGTTTATAGTGCTTTATCAGAAAAAGAAGGAAGATCA
* * **
3090 TTACTAGAATCCATATTTGTCTCATTTGAGGCACGAACTTAGACCTTACAATGATTGGTGGGAAG
712 TTACTAGAATACATACTTGTCTCATTTGAGGCACGAACTTAGACCTTACAACAATTGGTGGGAAG
3155 AAAGCCTTTGTTGCAAA
777 AAAGCCTTTGTTGCAAA
3172 AC
1 AC
3174 TGATGACAAC
Statistics
Matches: 696, Mismatches: 86, Indels: 26
0.86 0.11 0.03
Matches are distributed among these distances:
792 63 0.09
793 458 0.66
794 174 0.25
795 1 0.00
ACGTcount: A:0.35, C:0.15, G:0.21, T:0.30
Consensus pattern (793 bp):
ACCAAAGCATCAACGTTAGGTATCCTAACAAAGGCAATGTGTTTTTGGCTTCCCAATCTCGAAAA
GAAAGGAGACTGTTACGAGAATCGATGCTTGCCTTATTCAAGGGATGAACTTTCATTTTAAGAAA
AATAGGGCAAGGAAAAGATTTCCATGCAAAAGAAAAACGTCAATGTCATTTACCCTAATGAGGAG
AATCTGTTTATAGTGCCTTATCACAAAAAGAAGGAAGATCATTACTAGAATCTATACTTGTCTCA
ATTGAGGCACGAACTTAGAATTTACAAAAATTGGAAAGAAGAAAAGCCGTTGTTGCAAAACCAAA
GCATCAATATCGTGTATCCTAATAAGAAGAAAATGTTTATGGTGCCAAATCCTAAAAAGAATAAG
GATTAGCTAGAGTATTAATATTTGGCTTATTTAAGAGACAAATGTTGATTCTATCAAAAACAACG
AGAAGAAAAGCTTTTCTTCAGACACCAAAGCATCAACGTTAGGTATCCTAACAAAGGCAATGTGT
TTTGGCTTCCCAATCTTGAAAAGAAAGGAGACTGTTAGGAGAATCGATGCTTGTCTTATTCAAGG
GATAAACTTTCATTTAAGGAAAATAGGGTGAACGAAAGATTTCCAAGAAAAAAAAAAACTTCAAT
GTCTTTTGTCCTAAGCAGAGAATGTGTTTATAGTGCTTTATCAGAAAAAGAAGGAAGATCATTAC
TAGAATACATACTTGTCTCATTTGAGGCACGAACTTAGACCTTACAACAATTGGTGGGAAGAAAG
CCTTTGTTGCAAA
Found at i:2661 original size:318 final size:316
Alignment explanation
Indices: 2064--2724 Score: 1135
Period size: 316 Copynumber: 2.1 Consensus size: 316
2054 TTCTTGAGAC
2064 ACCAAAGCATCAATGTCGTGTATCCTAACAAAGGCAATGTGTTTTGGCTTCCCAATCTTGAAAAG
1 ACCAAAGCATCAATGTCGTGTATCCTAACAAAGGCAATGTGTTTTGGCTTCCCAATCTTGAAAAG
* * *
2129 AATGGAGACTGTTAGGAGAATCGATGCTTGTCTTATTCAAGGGATGAACTTTTATTTTAAGGAAA
66 AATGGAGACTGTTAGGAGAATCGATGCTTGCCTTATTCAAGGGATGAACTTTCATTTTAAGAAAA
* *
2194 ATAGGGTGAAGAAAAGATTTCCAGAAAAAAAAAAACTTCAATGTCTTTGTCCTAATCAGGAGAAT
131 ATAGGGCGAAGAAAAGATTTCCAGAAAAAAAAAAACTTCAATGTCTTTATCCTAATCAGGAGAAT
* *
2259 GTGTTTATAGTGCTTTATCAGAAAAAGGAGGAAGATCATTACTAGAATACATACTTGTCTCATTT
196 GTGTTTATAGTGCTTTATCAGAAAAAGAAGGAAGATCATTACTAGAATACATACTTGTCTCAATT
*
2324 GAGGCATGAACTTAGACTTTACAAACAATTGGTGGGAAG-AAAGCCTTTGTTGCGAA
261 GAGGCATGAACTTAGACTTTAC-AACAATTGGTGGGAAGAAAAGCCGTTGTTGCGAA
2380 ACCAAAGCATCAATGTCGTGTATCCTAACAAAGGCAATGTGTTTTGGCTTCCCAATCTTGAAAAG
1 ACCAAAGCATCAATGTCGTGTATCCTAACAAAGGCAATGTGTTTTGGCTTCCCAATCTTGAAAAG
2445 AATGGAGACTGTTAGGAGAATCGATGCTTGCCTTATTCAAGGGATGAACTTTCATTTTAAGAAAA
66 AATGGAGACTGTTAGGAGAATCGATGCTTGCCTTATTCAAGGGATGAACTTTCATTTTAAGAAAA
* * *
2510 ATAGGGCGAAGAAAAGATTTCCATGCAAAAGAAAAACTTCAATGTCTTTTATCCTAATGAGGAGA
131 ATAGGGCGAAGAAAAGATTTCCA-GAAAAAAAAAAACTTCAATGTC-TTTATCCTAATCAGGAGA
* *
2575 ATGTGTTTATATTGCTTTATCCGAAAAAGAAGGAAGATCATTACTAGAATACATACTTGTCTCAA
194 ATGTGTTTATAGTGCTTTATCAGAAAAAGAAGGAAGATCATTACTAGAATACATACTTGTCTCAA
* *
2640 TTGAGGCATGAACTTAGACTTTACAACGATTGGTGGGAAGAAAAGCCGTTGTTGTGAA
259 TTGAGGCATGAACTTAGACTTTACAACAATTGGTGGGAAGAAAAGCCGTTGTTGCGAA
* *
2698 ACCAAAGTATCAATATCGTGTATCCTA
1 ACCAAAGCATCAATGTCGTGTATCCTA
2725 TTAAGAAGAA
Statistics
Matches: 325, Mismatches: 17, Indels: 4
0.94 0.05 0.01
Matches are distributed among these distances:
316 149 0.46
317 35 0.11
318 141 0.43
ACGTcount: A:0.35, C:0.15, G:0.21, T:0.29
Consensus pattern (316 bp):
ACCAAAGCATCAATGTCGTGTATCCTAACAAAGGCAATGTGTTTTGGCTTCCCAATCTTGAAAAG
AATGGAGACTGTTAGGAGAATCGATGCTTGCCTTATTCAAGGGATGAACTTTCATTTTAAGAAAA
ATAGGGCGAAGAAAAGATTTCCAGAAAAAAAAAAACTTCAATGTCTTTATCCTAATCAGGAGAAT
GTGTTTATAGTGCTTTATCAGAAAAAGAAGGAAGATCATTACTAGAATACATACTTGTCTCAATT
GAGGCATGAACTTAGACTTTACAACAATTGGTGGGAAGAAAAGCCGTTGTTGCGAA
Found at i:2843 original size:318 final size:315
Alignment explanation
Indices: 2064--2766 Score: 883
Period size: 318 Copynumber: 2.2 Consensus size: 315
2054 TTCTTGAGAC
* ** * * * *
2064 ACCAAAGCATCAATGTCGTGTATCCTAACAAAGGCAATGTGTTTTGGCTTCCCAATCTTGAAAAG
1 ACCAAAGCATCAATATCGTGTATCCTAACAAAGAAAATGTGTTATGGCTGCCCAATCCTAAAAAG
* * * * * * * * **
2129 AATGGAGACTGTTAGGAGAATCGATGCTTGTCTTATTCAAGGGATGAACTTTTATTTTAAGGAAA
66 AATAGAGACTGTTA-GAGAATCAATGCTTGCCTTATTCAAGAGATCAAATTTCATTCTAACAAAA
* * *
2194 ATAGGGTGAAGAAAAGATTTCCAGAAAAAAAAAAACTTCAATGTCTTTGTCCTAATCAGGAGAAT
130 AAAGGGCGAAGAAAAGATTTCCAGAAAAAAAAAAACTTCAATGTCTTTATCCTAATCAGGAGAAT
* *
2259 GTGTTTATAGTGCTTTATCAGAAAAAGGAGGAAGATCATTACTAGAATACATACTTGTCTCATTT
195 GTGTTTATAGTGCTTTATCAGAAAAAGAAGGAAGATCATTACTAGAATACATACTTGTCTCAATT
*
2324 GAGGCATGAACTTAGACTTTACAAACAATTGGTGGGAAGAAAGCCTTTGTTGCGAA
260 GAGGCATGAACTTAGACTTTACAAACAATTGGTGGGAAGAAAGCCGTTGTTGCGAA
* ** * * * *
2380 ACCAAAGCATCAATGTCGTGTATCCTAACAAAGGCAATGTGTTTTGGCTTCCCAATCTTGAAAAG
1 ACCAAAGCATCAATATCGTGTATCCTAACAAAGAAAATGTGTTATGGCTGCCCAATCCTAAAAAG
* * * * * * *
2445 AATGGAGACTGTTAGGAGAATCGATGCTTGCCTTATTCAAGGGATGAACTTTCATTTTAAGAAAA
66 AATAGAGACTGTTA-GAGAATCAATGCTTGCCTTATTCAAGAGATCAAATTTCATTCTAACAAAA
* * * *
2510 ATAGGGCGAAGAAAAGATTTCCATGCAAAAGAAAAACTTCAATGTCTTTTATCCTAATGAGGAGA
130 AAAGGGCGAAGAAAAGATTTCCA-GAAAAAAAAAAACTTCAATGTC-TTTATCCTAATCAGGAGA
* *
2575 ATGTGTTTATATTGCTTTATCCGAAAAAGAAGGAAGATCATTACTAGAATACATACTTGTCTCAA
193 ATGTGTTTATAGTGCTTTATCAGAAAAAGAAGGAAGATCATTACTAGAATACATACTTGTCTCAA
* *
2640 TTGAGGCATGAACTTAGACTTTAC-AACGATTGGTGGGAAGAAAAGCCGTTGTTGTGAA
258 TTGAGGCATGAACTTAGACTTTACAAACAATTGGTGGGAAG-AAAGCCGTTGTTGCGAA
* *
2698 ACCAAAGTATCAATATCGTGTATCCTATTA-AGAAGAAAATGT-TTATGG-TGCCTAATCCTAAA
1 ACCAAAGCATCAATATCGTGTATCCTA--ACA-AAGAAAATGTGTTATGGCTGCCCAATCCTAAA
2760 AAGAATA
63 AAGAATA
2767 AGGATTAGCT
Statistics
Matches: 356, Mismatches: 25, Indels: 10
0.91 0.06 0.03
Matches are distributed among these distances:
316 149 0.42
317 35 0.10
318 157 0.44
319 6 0.02
320 9 0.03
ACGTcount: A:0.36, C:0.14, G:0.20, T:0.29
Consensus pattern (315 bp):
ACCAAAGCATCAATATCGTGTATCCTAACAAAGAAAATGTGTTATGGCTGCCCAATCCTAAAAAG
AATAGAGACTGTTAGAGAATCAATGCTTGCCTTATTCAAGAGATCAAATTTCATTCTAACAAAAA
AAGGGCGAAGAAAAGATTTCCAGAAAAAAAAAAACTTCAATGTCTTTATCCTAATCAGGAGAATG
TGTTTATAGTGCTTTATCAGAAAAAGAAGGAAGATCATTACTAGAATACATACTTGTCTCAATTG
AGGCATGAACTTAGACTTTACAAACAATTGGTGGGAAGAAAGCCGTTGTTGCGAA
Found at i:2898 original size:318 final size:317
Alignment explanation
Indices: 2064--2900 Score: 773
Period size: 318 Copynumber: 2.6 Consensus size: 317
2054 TTCTTGAGAC
* ** * * * *
2064 ACCAAAGCATCAATGTCGTGTATCCTAACAAAGGCAATGTGTTTTGGCTTCCCAATCTTGAAAAG
1 ACCAAAGCATCAATATCGTGTATCCTAACAAAGAAAATGTGTTATGGCTGCCCAATCCTAAAAAG
* * * * * * * * **
2129 AATGGAGACTGTTAGGAGAATCGATGCTTGTCTTATTCAAGGGATGAACTTTTATTTTAAGGAAA
66 AATAGAGACTGTTA-GAGAATCAATGCTTGCCTTATTCAAGAGATCAAATTTCATTCTAACAAAA
* * * * * * * * ** *
2194 ATAGGGTGAAGAAAAGATTTCCA-GAAAAAAAAAAACTTCAATGTCT-TTGTCCTAATCAGGAGA
130 AAAGGGCGAAGAAAAGATTTCCATGCAAAACAAAAACATCAACGTCTGGTATCCTAAAAAGGACA
* *
2257 ATGTGTTTATAGTGCTTTATCAGAAAAAGGAGGAAGATCATTACTAGAATACATACTTGTCTCAT
195 ATGTGTTTATAGTGCTTTATCAGAAAAAGAAGGAAGATCATTACTAGAATACATACTTGTCTCAA
*
2322 TTGAGGCATGAACTTAGACTTTACAAACAATTGGTGGGAAGAAAGCCTTTGTTGCGAA
260 TTGAGGCATGAACTTAGACTTTACAAACAATTGGTGGGAAGAAAGCCGTTGTTGCGAA
* ** * * * *
2380 ACCAAAGCATCAATGTCGTGTATCCTAACAAAGGCAATGTGTTTTGGCTTCCCAATCTTGAAAAG
1 ACCAAAGCATCAATATCGTGTATCCTAACAAAGAAAATGTGTTATGGCTGCCCAATCCTAAAAAG
* * * * * * *
2445 AATGGAGACTGTTAGGAGAATCGATGCTTGCCTTATTCAAGGGATGAACTTTCATTTTAAGAAAA
66 AATAGAGACTGTTA-GAGAATCAATGCTTGCCTTATTCAAGAGATCAAATTTCATTCTAACAAAA
* * * * ** ** *
2510 ATAGGGCGAAGAAAAGATTTCCATGCAAAAGAAAAACTTCAATGTCTTTTATCCTAATGAGGAGA
130 AAAGGGCGAAGAAAAGATTTCCATGCAAAACAAAAACATCAACGTCTGGTATCCTAAAAAGGACA
* *
2575 ATGTGTTTATATTGCTTTATCCGAAAAAGAAGGAAGATCATTACTAGAATACATACTTGTCTCAA
195 ATGTGTTTATAGTGCTTTATCAGAAAAAGAAGGAAGATCATTACTAGAATACATACTTGTCTCAA
* *
2640 TTGAGGCATGAACTTAGACTTTAC-AACGATTGGTGGGAAGAAAAGCCGTTGTTGTGAA
260 TTGAGGCATGAACTTAGACTTTACAAACAATTGGTGGGAAG-AAAGCCGTTGTTGCGAA
* *
2698 ACCAAAGTATCAATATCGTGTATCCTATTA-AGAAGAAAATGT-TTATGG-TGCCTAATCCTAAA
1 ACCAAAGCATCAATATCGTGTATCCTA--ACA-AAGAAAATGTGTTATGGCTGCCCAATCCTAAA
* * * * * * * *
2760 AAGAATA-AGGATTAGCTT-GAGTATTAATGTTTGGCTTGTTTAAGAGA-CAAATGTTGATTCTA
63 AAGAATAGA-GACT-G-TTAGAGAATCAATGCTTGCCTTATTCAAGAGATCAAAT-TTCATTCTA
* * * * * * * *
2822 TCAAAAACAATGG-GAAGAAAAGCTTTTC-TTCAGACACCAAAGCATCAACGT-TAGGTATCCTA
124 ACAAAAA-AAGGGCGAAGAAAAGATTTCCATGCA-AAACAAAAACATCAACGTCT-GGTATCCTA
2884 ACAAAGG-CAATGTGTTT
186 A-AAAGGACAATGTGTTT
2901 TGGCTTCCCA
Statistics
Matches: 451, Mismatches: 56, Indels: 26
0.85 0.11 0.05
Matches are distributed among these distances:
316 149 0.33
317 44 0.10
318 234 0.52
319 13 0.03
320 11 0.02
ACGTcount: A:0.36, C:0.14, G:0.20, T:0.29
Consensus pattern (317 bp):
ACCAAAGCATCAATATCGTGTATCCTAACAAAGAAAATGTGTTATGGCTGCCCAATCCTAAAAAG
AATAGAGACTGTTAGAGAATCAATGCTTGCCTTATTCAAGAGATCAAATTTCATTCTAACAAAAA
AAGGGCGAAGAAAAGATTTCCATGCAAAACAAAAACATCAACGTCTGGTATCCTAAAAAGGACAA
TGTGTTTATAGTGCTTTATCAGAAAAAGAAGGAAGATCATTACTAGAATACATACTTGTCTCAAT
TGAGGCATGAACTTAGACTTTACAAACAATTGGTGGGAAGAAAGCCGTTGTTGCGAA
Found at i:10956 original size:476 final size:476
Alignment explanation
Indices: 9827--16881 Score: 8690
Period size: 476 Copynumber: 14.8 Consensus size: 476
9817 GTTTTCATCA
** *
9827 ATATTTGTCTCATTTGAGGCACGAACTTAGACTTTACAACGATTGGTGGGAAGAAAGCCTTTCTT
1 ATATTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTGTT
* * * * * *
9892 GTGAAACCAAAGCATGAATATTGTGTATCCTAATGAGAACACTATGTTTATGGTGCCTAATCGTG
66 GCGAAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTA
* * * * * * * * *
9957 AAAGGAATGGGGATTAGTGCGAGTATTCATATTTGTCTTACTTGAGAGACTATCTTTGACTCTAT
131 AAAAGAATGGGGATTAGTGTGAGTATTCATGTTTGTCTTATTTAAGAGACAAACGTTGATTCTAT
** ** * * * * *
10022 CAAAAACGGCTAGAAGATAAGCTTTTCTTGAGACACCAAAGCATCAATGTTATGCATCCTAACGA
196 CAAAAACAACGGGAAGAAAAGCTTTTCTTGAGACACCAAAGCATCAATGTCAGGTATCCTAACAA
* * * *
10087 AGGCAATGTGTTATGACTTCCCAATCTTGAAAAGAATGGAGACTGTTA-GTAGAATCGTTGCTTG
261 AGGCAATGTGTTTTGGCTTCCCAATCTTGAAAAGAAAGGAGACTGTTACG-AGAATCGATGCTTG
* * *
10151 TCTTATTCAAGGGATGAACTTTTATTTTAAGGAAAATAGGGCGAAGAAAAGATTTCCA-GGAAAA
325 TCTTATTCAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAA
* * * * * * * *
10215 -AAAAACTTCAATGTCTTTTGTCCTAATCAAGAGAATGTGTTTATAGTGCTTGATCAGAAAAAGA
390 GAAAAACATCAATGTCATTTATCCTAATGAGGAGAATGCGTTTATAGTGCTTTATCACAAAAAGA
* *
10279 AGGAAGATCTTTACTAGAATAC-
455 ATGAAGATCATTACTAGAAT-CT
* * ** *
10301 ATACTTGTCTCATTTGAGGCATGAACTTAGACTTTACAACGATTGGTGGGAAGAAACCCTTTGTT
1 ATATTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTGTT
* * *
10366 GCAAAACCAAAGCATCAATATCATGTATCCTAATGGGAAGACTATGTTTATGGTGCCTAATCCTA
66 GCGAAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTA
* * * * * * *
10431 AAAAGAATGAGGATTAGTTTGATTATTAATGTTTGGCTTATTCAAGAGACAAACGTTGATTGTAT
131 AAAAGAATGGGGATTAGTGTGAGTATTCATGTTTGTCTTATTTAAGAGACAAACGTTGATTCTAT
* * *
10496 AAAAAACAATGGGAAGAAAAGCTTTTCTTGAGACACCAAAGCATCAATGTCTGGTATCCTAACAA
196 CAAAAACAACGGGAAGAAAAGCTTTTCTTGAGACACCAAAGCATCAATGTCAGGTATCCTAACAA
* * *
10561 AGGCAATGTGTTTTGGCTTCCCAAACTCGAAAAGAAAGGAGATTGTTACGAGAATCGATGCTTGT
261 AGGCAATGTGTTTTGGCTTCCCAATCTTGAAAAGAAAGGAGACTGTTACGAGAATCGATGCTTGT
* * * ** *
10626 CTTATTTAGGGGATGAACTTTGATTTTAAGGATAATTTGGCAAAGCAAAGATTTCCATGCAAAAG
326 CTTATTCAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAG
* * * * * *
10691 AAAATCATCAATGTCATTTATCCTAATGTGGAGAATCCATTTATAGTGCCTTATCACAAAAGGAA
391 AAAAACATCAATGTCATTTATCCTAATGAGGAGAATGCGTTTATAGTGCTTTATCACAAAAAGAA
10756 TGAAGATCATTACTAGAATCT
456 TGAAGATCATTACTAGAATCT
* * * *** *
10777 ATGTTTGTCTCATTTGTGGCACGAACTTAGAATTTACAAAAATTGGAAAGAAGAAAGCCTTTATT
1 ATATTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTGTT
* * *
10842 GCGAAACCAAAGCATCAATATCATGTATCCTAACT-AGAAGACTATGTTTATGGTGCCAAATCGT
66 GCGAAACCAAAGCATCAATATCGTGTATCCTAA-TGAGAAGACTATGTTTATGGTGCCTAATCCT
* * ** ** * * *
10906 GAAAAGATTGGGGATTAGTAAGTTTATTCATATTTGTCTTATTTAAGAGACAAACTTTGATTCCA
130 AAAAAGAATGGGGATTAGTGTGAGTATTCATGTTTGTCTTATTTAAGAGACAAACGTTGATTCTA
* * ** * * * *
10971 TAAAAAACGACAAGAAGAAAAGCTTTTCTTGAGTCACCAAAGCATCAATGTCATGTATCCCAATG
195 TCAAAAACAACGGGAAGAAAAGCTTTTCTTGAGACACCAAAGCATCAATGTCAGGTATCCTAA-C
* * * **
11036 AAA-GCAATGTGTTTTGGCTTCCCAATCTTGCAAAGAATGGA-AATGTTGGGAGAATCGATGCTT
259 AAAGGCAATGTGTTTTGGCTTCCCAATCTTGAAAAGAAAGGAGACTGTTACGAGAATCGATGCTT
* * * **
11099 GTCTTATTCAAGGGATGAATTTTCATTTTAAGAAAAATAGGGTGAAGAAAAGATTTCCATGCAAA
324 GTCTTATTCAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAA
* * * * *
11164 AGAAAAACTTCAATGTCGTTTATCCTAATGAGGAGAATGTGTTTATAGTGCTTTATCAGAGAAAG
389 AGAAAAACATCAATGTCATTTATCCTAATGAGGAGAATGCGTTTATAGTGCTTTATCACAAAAAG
*
11229 AATGAAGATCAATACTAGAATAC-
454 AATGAAGATCATTACTAGAAT-CT
* * * * * *
11252 ATATTTTTCCCATTTGAGGCTCGAACTTTGACTTTACAACGAA-TGGTGGGAAGAAAGCCGTTGT
1 ATATTTGTCTCATTTGAGGCACGAACTTAGACTTTACAA-AAATTGGTGGGAAGAAAGCCTTTGT
* * * *
11316 TGTGAAACCAAAGTATCAATATCATGTATCCTAATGAGAAGACAATGTTTATGGTGCCTAATCCT
65 TGCGAAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCT
* * * * * *
11381 AAAAACAATGAGAATTAGTTTGAGTATTAATGTTTGGCTTATTTAAGAGACAAACGTTGATTCTA
130 AAAAAGAATGGGGATTAGTGTGAGTATTCATGTTTGTCTTATTTAAGAGACAAACGTTGATTCTA
* * * *
11446 TCAAAAACAATGCGAAGAAAAGCTTTTCTTGAGACACCAAAGCAACAATATCAGGTAGACTGTTA
195 TCAAAAACAACGGGAAGAAAAGCTTTTCTTGAGACACCAAAGCATCAATGTC----AG---G-T-
* * *
11511 GGAGTACTAACAAAGGCAATGTGTTTTGGCTTCCCAATCTTGAAAAGAAGGGAGACTGTTAGGAG
251 --A-TCCTAACAAAGGCAATGTGTTTTGGCTTCCCAATCTTGAAAAGAAAGGAGACTGTTACGAG
* * * *
11576 AATCGATGCCTGTCTTATTCAAGGCATGAACTTTCATTTTAAGGAAAATAGGGCGAAGAAAAGAT
313 AATCGATGCTTGTCTTATTCAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGAT
* * * * * * *
11641 TTCCAAGCAAAAGAAAAACTTCAATGTC-TTTAGCCCTAAAGAGGAGAATGTGTTTGTAGTGCCT
378 TTCCATGCAAAAGAAAAACATCAATGTCATTTA-TCCTAATGAGGAGAATGCGTTTATAGTGCTT
* * *
11705 TATAAGAAAAAGAATGAAGATCATTACTAGAATCC
442 TATCACAAAAAGAATGAAGATCATTACTAGAATCT
** *
11740 ATATTTGTCTCATTTGAGGCACGAACTTAGACTTTACAACCATTGGTGGGAAGAAATCCTTTGTT
1 ATATTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTGTT
* * *
11805 GCGAAACCAAAGTATCAATATCGTGTATCCTAATGAGAAGACAATGTTTATTGTGCCTAATCCTA
66 GCGAAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTA
*
11870 AAAAGAAGGGGGATTAGTGTGAGTATTCATGTTTGTCTTATTTAAGAGACAAAACGTTGATTCTA
131 AAAAGAATGGGGATTAGTGTGAGTATTCATGTTTGTCTTATTTAAGAGAC-AAACGTTGATTCTA
* * * * *
11935 TCAAAAACAACGCGCAGAAAAGATTTTCTTGAGACACCAAAGCATCAATGTCGGGTATACTAACA
195 TCAAAAACAACGGGAAGAAAAGCTTTTCTTGAGACACCAAAGCATCAATGTCAGGTATCCTAACA
* *
12000 AAGGCAATGTGTTTTGGCTTCCCAATCTTGAAAAGAAAGGAGACTATTACGAAAATCGATGCTTG
260 AAGGCAATGTGTTTTGGCTTCCCAATCTTGAAAAGAAAGGAGACTGTTACGAGAATCGATGCTTG
* * ** *
12065 TCTTATT-TAGGGCATGAGCTTTGATTTTAAGGAAAATTTGGCAAAGAAAAGGTTTCCATGCAAA
325 TCTTATTCAAGGG-ATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAA
* * * * *
12129 AGAAAATCTTCAATGTCATTTATCCTAATGCA-TATAATGCGTTTATAGTGCTTTATCACAAAAT
389 AGAAAAACATCAATGTCATTTATCCTAATG-AGGAGAATGCGTTTATAGTGCTTTATCACAAAAA
* * *
12193 GAATGAAGATCAATGCCAGAATCT
453 GAATGAAGATCATTACTAGAATCT
* **
12217 ATGTTTGTCTCATTTGAGGCACGAACTTAGAAGTTA-AAACAATTGGTGGGAAGAAAGCCTTTGT
1 ATATTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAA-AATTGGTGGGAAGAAAGCCTTTGT
* *
12281 TGCGAAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGAGCCTAATGCT
65 TGCGAAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCT
* * * *
12346 -AAAAGCAATGGGGATTAGTATGAGTATTCATGTTTGGCTTATTTAAGAGACAAACATTGATTCG
130 AAAAAG-AATGGGGATTAGTGTGAGTATTCATGTTTGTCTTATTTAAGAGACAAACGTTGATTCT
* * * * * * *
12410 AACAAAAACAGCAGGAAGAAAAGCTTTTCTTGAGATACCAAAGCATCAATTTCCGGTATCCTATC
194 ATCAAAAACAACGGGAAGAAAAGCTTTTCTTGAGACACCAAAGCATCAATGTCAGGTATCCTAAC
* * * * *
12475 GAAGGCAATGTGGTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTGGTAGGAGAATCGATGCTT
259 AAAGGCAATGTGTTTTGGCTTCCCAATCTTGAAAAGAAAGGAGACTGTTACGAGAATCGATGCTT
* * * * *
12540 GTCTTATTCAAGGGATGAACTTTCACTTTAAGGAAAATAGGGCGAAGAAAAGATTTCCAGGAAAA
324 GTCTTATTCAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAA
* * * * * *
12605 AGAAAAA-ATTCAAGGTCTTTTGTCCTAATCAGGAGAATGTGTTTATAGTGCTTTATCAAAAAAA
389 AGAAAAACA-TCAATGTCATTTATCCTAATGAGGAGAATGCGTTTATAGTGCTTTATCACAAAAA
*
12669 GAATGAAGATCATTACTAGAATCC
453 GAATGAAGATCATTACTAGAATCT
* * *
12693 ATATTTGTCTTATTTGAGGCACGAACTTAGACTTTACAACAATTGGTGGGAAGAAAGGCTTTGTT
1 ATATTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTGTT
* * * * *
12758 GCGAAACTAGAGCATCAATATCGTGTATCTTAATGAGAAGACAATGTTTACGGTGCCTAATCCTA
66 GCGAAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTA
* * * **
12823 AAAACAATAGGGATTAGTGTGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCGT
131 AAAAGAATGGGGATTAGTGTGAGTATTCATGTTTGTCTTATTTAAGAGACAAACGTTGATTCTAT
* ** ** * * **
12888 AAAAAATGACAAGAAGAAAAGCTTTTCTTGAGTCACCAAAGCATCAATGTCAAGTATCCTAATGA
196 CAAAAACAACGGGAAGAAAAGCTTTTCTTGAGACACCAAAGCATCAATGTCAGGTATCCTAACAA
* * * *
12953 AGGCAATGTGTTTTGGCTTCCCAATCTTGAAAAGAATGGAAACTGTTAGGAGAATTGATGCTTGT
261 AGGCAATGTGTTTTGGCTTCCCAATCTTGAAAAGAAAGGAGACTGTTACGAGAATCGATGCTTGT
* * * **
13018 CTTATTCAAGGGATGTACTTTCATTTTAA-GAAAAGTAGGGCGAAGAAAAGATTTCCCA-AAAAA
326 CTTATTCAAGGGATGAACTTTGATTTTAAGGAAAA-TAGGGCAAAGAAAAGATTT-CCATGCAAA
* * * * *
13081 AGAAAAACTTCAATGTCTTTTATCCAAATGAGGAGAATGTGTTTATAGTGCTTTATCAAAAAAAG
389 AGAAAAACATCAATGTCATTTATCCTAATGAGGAGAATGCGTTTATAGTGCTTTATCACAAAAAG
* *
13146 AATGAATATCATTACTAGAATAT
454 AATGAAGATCATTACTAGAATCT
* * **
13169 ATACTTGTCTCATTTGAGGCACGAACTTACACTTTACAACGATTGGTGGGAAGAAAGCCTTTGTT
1 ATATTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTGTT
13234 GCGAAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTA
66 GCGAAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTA
*** * * * * * * *
13299 AAAAGAATAAAGATTAGTTTGAGTATTAATATTTGGCTTATTCAAGAGACAAATGTAGATTCTAT
131 AAAAGAATGGGGATTAGTGTGAGTATTCATGTTTGTCTTATTTAAGAGACAAACGTTGATTCTAT
* * *
13364 CAAAAGCAACGGGAAGAAAAGCTTTTCTTGAGACACCAAAGTATCAATGT-AGAGTATTCTAACA
196 CAAAAACAACGGGAAGAAAAGCTTTTCTTGAGACACCAAAGCATCAATGTCAG-GTATCCTAACA
* *
13428 AAGGCAATGCGTTTTGGCTTCCCAATCTTGAAAAGGAAGGAGACTGTTACGAGAATCGATGCTTG
260 AAGGCAATGTGTTTTGGCTTCCCAATCTTGAAAAGAAAGGAGACTGTTACGAGAATCGATGCTTG
* * ** *
13493 TCTTATTCAGGGGATGAACTTTGATTTTAAGGATAATTTGGCAAAGCAAAGATTTCCATGCAAAA
325 TCTTATTCAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAA
* * * * * **
13558 GAAAAACATCAATGTCATTTATCCTAATGCGGAGCATCCATTTAAAGTGGC-TTATCACAAACGG
390 GAAAAACATCAATGTCATTTATCCTAATGAGGAGAATGCGTTTATAGT-GCTTTATCACAAAAAG
*
13622 AATGAAGATCATTAGTAGAATCT
454 AATGAAGATCATTACTAGAATCT
** * * * *** *
13645 ATGGTTGTCTCATTTGTGGCACGAACTTAGAATTTAGAAAAATTGGAAAGAAAAAAGCCTTTGTT
1 ATATTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTGTT
* * * *
13710 GCGATACCAAAGCATCAATATCGTATATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCGTG
66 GCGAAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTA
** * * * * *
13775 AAAAGAATGGGGATTAGTAAGAGTATTCATATTTGTCTTACTTGAGAAACTAAC-TTCGATTCTA
131 AAAAGAATGGGGATTAGTGTGAGTATTCATGTTTGTCTTATTTAAGAGACAAACGTT-GATTCTA
*** * * **
13839 TCAAAAATGGCAGGAAGAAAAGCTTTTCTTGAGACACCAAAGCATCAATGTCAAGTATCCTAATG
195 TCAAAAACAACGGGAAGAAAAGCTTTTCTTGAGACACCAAAGCATCAATGTCAGGTATCCTAACA
* *
13904 AAGGCAATGTGTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTGTTAGGAGAATCGATGCTTG
260 AAGGCAATGTGTTTTGGCTTCCCAATCTTGAAAAGAAAGGAGACTGTTACGAGAATCGATGCTTG
* * *
13969 TCTTATTCAAGGGATGAACTTTTATTTTAAGGAAAATAGGGCGAAGAAAAGATTTCCA-GGAAAA
325 TCTTATTCAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAA
* * * * * * *
14033 -ATAAAACTTCAATGTCTTTTGTCCTAATCAGGAGAATGTGTTTATAGTGCTTTATCAGAGAAAG
390 GA-AAAACATCAATGTCATTTATCCTAATGAGGAGAATGCGTTTATAGTGCTTTATCACAAAAAG
* *
14097 AAGGAAGATCATTACCAGAATAC-
454 AATGAAGATCATTACTAGAAT-CT
* * **
14120 ATACTTGTCTCATTTGAGGCATGAACTTAGACTTTACAATGATTGGTGGGAAGAAAGCCTTTGTT
1 ATATTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTGTT
* *
14185 GCGAAACCAAAGCATCAATATCATGTATCCTAATGGGAAGACTATGTTTATGGTGCCTAATCCTA
66 GCGAAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTA
* * * * *
14250 AAAAGAATGAGGATTAGTTTGAGTATTAATGTTTGGCTTATTCAAGAGACAAACGTTGATTCTAT
131 AAAAGAATGGGGATTAGTGTGAGTATTCATGTTTGTCTTATTTAAGAGACAAACGTTGATTCTAT
* * * *
14315 AAAAAACAATGGGAAGAAAAGCTTTTCTTGAGACACCAAAGCATCAATGTCCGGTATCCTAACGA
196 CAAAAACAACGGGAAGAAAAGCTTTTCTTGAGACACCAAAGCATCAATGTCAGGTATCCTAACAA
* * *
14380 AGGCAATGTGTTTTGGCTTCCCAATCTCGAAAAAAAAGGAGACTGTTACGAGAATCGATGCTTGG
261 AGGCAATGTGTTTTGGCTTCCCAATCTTGAAAAGAAAGGAGACTGTTACGAGAATCGATGCTTGT
* * * ** *
14445 CTTATTTAGGGGATGAACTTTGATTTTAAGGATAATTTGGCAAAGCAAAGATTTCCATGCAAAAG
326 CTTATTCAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAG
* * *
14510 AAAACCATCAATGTCATTTATCCTAATGCA-AAGATTGCGTTTATAGTGCTTTATCACAAAAAGA
391 AAAAACATCAATGTCATTTATCCTAATG-AGGAGAATGCGTTTATAGTGCTTTATCACAAAAAGA
*
14574 ATGAAGATCATTACCAGAATCT
455 ATGAAGATCATTACTAGAATCT
* * * * * ***
14596 ATGTTTGTCTCATCTGAGGCACAAACTTATAATTTACAAAAATTGGAAAGAAGAAAGCCTTTGTT
1 ATATTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTGTT
* * *
14661 GCGACACCGAAGCATCAATATCGTGTATCC-ATATGAGAAGATTATGTTTATGGTGCCTAATCCT
66 GCGAAACCAAAGCATCAATATCGTGTATCCTA-ATGAGAAGACTATGTTTATGGTGCCTAATCCT
* * * **
14725 GAAAAGAATGGGAATTAGTGTGAGTATTCATGTTTGTCTTATTTTAGAGACAAATTTTGATTCTA
130 AAAAAGAATGGGGATTAGTGTGAGTATTCATGTTTGTCTTATTTAAGAGACAAACGTTGATTCTA
* * * * * * *
14790 GCAAAAACGACGCGAAGAAAAGATTTTCTTGAGACACCAAAGCATCAACGACGGGTATCCTAACA
195 TCAAAAACAACGGGAAGAAAAGCTTTTCTTGAGACACCAAAGCATCAATGTCAGGTATCCTAACA
* * * *
14855 AAGGCAATGTGTTTTGGCCTT--CAATTCTTGAAAAGAAAGGAAACTATTACGAGAATCCATTCT
260 AAGGCAATGTGTTTTGG-CTTCCCAA-TCTTGAAAAGAAAGGAGACTGTTACGAGAATCGATGCT
* * * ** * *
14918 TGTCTTATTTAGGGGATGAACTTTGATTTTAAGGATAATTTGGCAAAGCAAAGATTTCTATGCAA
323 TGTCTTATTCAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAA
* *
14983 AAGAAAATCATCAATGTCATTTATCCTAAAGCA-GAGAATGCGTTTATAGTGCTTTATCACAAAA
388 AAGAAAAACATCAATGTCATTTATCCTAATG-AGGAGAATGCGTTTATAGTGCTTTATCACAAAA
* *
15047 AGAATGAAGATCATTACCAAAATCT
452 AGAATGAAGATCATTACTAGAATCT
** * * ***
15072 ACGTTTGTCTCATTTGAGGCACGAACGTAGAATTTACAAAAATTGGAAAGAAGAAAGCCTTTGTT
1 ATATTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTGTT
* ** *
15137 GCGACACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTACATTTACGGTGCCTAAT-CTA
66 GCGAAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTA
* * * *
15201 GAAAAGAATGAGGAATAGTATGAGTATTCATGTTTGTTTTATTTAAGAGACAAACGTTGATTCTA
131 -AAAAGAATGGGGATTAGTGTGAGTATTCATGTTTGTCTTATTTAAGAGACAAACGTTGATTCTA
* * * * *
15266 TCAAAAACGACGCGAAGAAAAGCTTTTCTTGAGATACCAAAGCATCAAAGTCGGGTATCCTAACA
195 TCAAAAACAACGGGAAGAAAAGCTTTTCTTGAGACACCAAAGCATCAATGTCAGGTATCCTAACA
* *
15331 AAGGCAATGTGTTTTGGCTTCTCAATCTTGAAAAGAAAGGAGACTGTTACGAGAATCGACGCTTG
260 AAGGCAATGTGTTTTGGCTTCCCAATCTTGAAAAGAAAGGAGACTGTTACGAGAATCGATGCTTG
* * * ** * *
15396 TCTTACTCAGGGGATGAACTTTGATTTTAAGGATAATTTGGCAAAGCAAAGATTTCCATACAAAA
325 TCTTATTCAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAA
* * * * * * * * * *
15461 GAAAATCATCAATGTCTTTTAGCCTAATGCGGAGAATCCATTTAAAGTGCCTTATCATAAAAGGA
390 GAAAAACATCAATGTCATTTATCCTAATGAGGAGAATGCGTTTATAGTGCTTTATCACAAAAAGA
*
15526 ATGGAGATCATTACTAGAATCT
455 ATGAAGATCATTACTAGAATCT
* * * ***
15548 ATGTTTGTCTCATTTGTGGCACGAACTTAGAATTTACAAAAATTGGAAAGAAGAAAGCCTTTGTT
1 ATATTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTGTT
* * *
15613 GCGACACCGAAGCATCAATATCGTGTATCC-ATATGAGAAGATTATGTTTATGGTGCCTAATCCT
66 GCGAAACCAAAGCATCAATATCGTGTATCCTA-ATGAGAAGACTATGTTTATGGTGCCTAATCCT
* * * * * ** ** *
15677 GAAAAGAATGGGGATTAGTGTGAATATTCATGTTAGTCTTATTGAAGGGATGAATTTTGATTATA
130 AAAAAGAATGGGGATTAGTGTGAGTATTCATGTTTGTCTTATTTAAGAGACAAACGTTGATTCTA
** * * *
15742 TCAAAAATGATGAGAAGAAAAGCTTTTGTTGAGACACCAAAGCATCAATGTCAGGTATCCTAACA
195 TCAAAAACAACGGGAAGAAAAGCTTTTCTTGAGACACCAAAGCATCAATGTCAGGTATCCTAACA
* * * *
15807 AAGGCAATGTGTTTTGGCTTCTCAATCTTGAAAAGAAAGGAGACTATTACAAGAATCAATGCTTG
260 AAGGCAATGTGTTTTGGCTTCCCAATCTTGAAAAGAAAGGAGACTGTTACGAGAATCGATGCTTG
* * * ** *
15872 TCTTATTCAGGGGAAGAACTTTGATTTTAAGGATAATTTGGCAAAGCAAAGATTTCCATGCAAAA
325 TCTTATTCAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAA
* * * * *
15937 GAAAATCATCAATGTCATTTATCCTAATGCA-GAGAATCCATTTATAATGCCTTATCACAAAAAG
390 GAAAAACATCAATGTCATTTATCCTAATG-AGGAGAATGCGTTTATAGTGCTTTATCACAAAAAG
16001 AATGAAGATCATTACTAGAATCT
454 AATGAAGATCATTACTAGAATCT
* * *** *
16024 ATATTCGTCTCATTT-ATGGCACGAACTTAGAATTTACAAAAATTGGAAAGAATAAAGCCTTTGT
1 ATATTTGTCTCATTTGA-GGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTGT
* * *
16088 TGCGAAACCAAAGCATCAATATCGTGTATCATAATGAGAAGACTATGTTTATGGAGCCTAATGCT
65 TGCGAAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCT
* * * *
16153 -AAAAGCAATGGGGATTAGTATGAGTATTCATGTTTGGCTTATTTAAGTGACAAACATTGATTCT
130 AAAAAG-AATGGGGATTAGTGTGAGTATTCATGTTTGTCTTATTTAAGAGACAAACGTTGATTCT
* * * * *
16217 AACAAAAACAGCAGGAAGAAAAGCTTTTCTTGAGACACCAAAGCATCAATTTCCGGTATCCTAAC
194 ATCAAAAACAACGGGAAGAAAAGCTTTTCTTGAGACACCAAAGCATCAATGTCAGGTATCCTAAC
* * * *
16282 GAAGGCAATGTGTTTTGGCTTCCCAATCTTGAAAAGAATGGAGATTGTTAGGAGAATCGATGCTT
259 AAAGGCAATGTGTTTTGGCTTCCCAATCTTGAAAAGAAAGGAGACTGTTACGAGAATCGATGCTT
* * * * * *
16347 GTCTTATTCAAGGGATGAAATTTCACTTTAAGGAAAATAGGGCGAAGAAAAGATTTCCAGGAAAA
324 GTCTTATTCAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAA
* * * * * *
16412 AGAAAAA-ATTCAATGTCTTTTGTCCAAATCAGGAGAATGTGTTTATAGTGCTTTATCAAAAAAA
389 AGAAAAACA-TCAATGTCATTTATCCTAATGAGGAGAATGCGTTTATAGTGCTTTATCACAAAAA
*
16476 GAATGAAGATCATTACTAGAATCC
453 GAATGAAGATCATTACTAGAATCT
* *
16500 ATATTTGCCTCATTTGAGGCACGAACTTAGACTTTACAACAATTGGTGGGAAGAAAGCCTTTGTT
1 ATATTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTGTT
* * *
16565 GCGAAACCAGAGCATCAATATCGTGTATCCTAATGAGAAGACAATATTTATGGTGCCTAATCCTA
66 GCGAAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTA
* **
16630 AAAAGAATGGGGATTAGTGTGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCGT
131 AAAAGAATGGGGATTAGTGTGAGTATTCATGTTTGTCTTATTTAAGAGACAAACGTTGATTCTAT
* * ** * *
16695 AAAAAACGACAAGAAGAAACGCTTTTCTTGAGACACCAAAGCGTCAATGTC-GTGTATCCTAACA
196 CAAAAACAACGGGAAGAAAAGCTTTTCTTGAGACACCAAAGCATCAATGTCAG-GTATCCTAACA
* * * * *
16759 AAGGCAATGTGTTTTGGCTTCCCAATCTTGAAAAGAAAGGAGACTATTAGGAAAATCGATGCCTA
260 AAGGCAATGTGTTTTGGCTTCCCAATCTTGAAAAGAAAGGAGACTGTTACGAGAATCGATGCTTG
** * *
16824 TCTTATTCAAGGGATGAACTTTCTTTTTAAGGAAAATAGGGCGAACAAAAGATTTCCA
325 TCTTATTCAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCA
16882 GGTGAAAGCT
Statistics
Matches: 5706, Mismatches: 802, Indels: 144
0.86 0.12 0.02
Matches are distributed among these distances:
474 328 0.06
475 781 0.14
476 3777 0.66
477 384 0.07
478 6 0.00
479 1 0.00
481 1 0.00
482 2 0.00
483 1 0.00
485 1 0.00
486 4 0.00
487 46 0.01
488 313 0.05
489 61 0.01
ACGTcount: A:0.36, C:0.15, G:0.20, T:0.30
Consensus pattern (476 bp):
ATATTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTGTT
GCGAAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTA
AAAAGAATGGGGATTAGTGTGAGTATTCATGTTTGTCTTATTTAAGAGACAAACGTTGATTCTAT
CAAAAACAACGGGAAGAAAAGCTTTTCTTGAGACACCAAAGCATCAATGTCAGGTATCCTAACAA
AGGCAATGTGTTTTGGCTTCCCAATCTTGAAAAGAAAGGAGACTGTTACGAGAATCGATGCTTGT
CTTATTCAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAG
AAAAACATCAATGTCATTTATCCTAATGAGGAGAATGCGTTTATAGTGCTTTATCACAAAAAGAA
TGAAGATCATTACTAGAATCT
Found at i:17653 original size:13 final size:13
Alignment explanation
Indices: 17635--17660 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
17625 CAATTTTTTG
17635 TGTATCGATACAT
1 TGTATCGATACAT
17648 TGTATCGATACAT
1 TGTATCGATACAT
17661 ACTTGCTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:20059 original size:21 final size:21
Alignment explanation
Indices: 20035--20081 Score: 55
Period size: 21 Copynumber: 2.3 Consensus size: 21
20025 TTTGATGCTG
20035 ATTTTG-A-TGAAAAACGAAGT
1 ATTTTGAAGTGAAAAAC-AAGT
20055 -TATTTGAAGTGAAAAACAAGT
1 AT-TTTGAAGTGAAAAACAAGT
20076 ATTTTG
1 ATTTTG
20082 CAAAAGATTT
Statistics
Matches: 23, Mismatches: 0, Indels: 7
0.77 0.00 0.23
Matches are distributed among these distances:
19 1 0.04
20 4 0.17
21 9 0.39
22 9 0.39
ACGTcount: A:0.43, C:0.04, G:0.19, T:0.34
Consensus pattern (21 bp):
ATTTTGAAGTGAAAAACAAGT
Found at i:20220 original size:13 final size:13
Alignment explanation
Indices: 20202--20240 Score: 69
Period size: 13 Copynumber: 3.0 Consensus size: 13
20192 ATAATCACCC
*
20202 TGTATCGATACAG
1 TGTATCGATACAA
20215 TGTATCGATACAA
1 TGTATCGATACAA
20228 TGTATCGATACAA
1 TGTATCGATACAA
20241 AGAAAAATGT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 25 1.00
ACGTcount: A:0.36, C:0.15, G:0.18, T:0.31
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:20251 original size:20 final size:20
Alignment explanation
Indices: 20226--20304 Score: 77
Period size: 20 Copynumber: 3.7 Consensus size: 20
20216 GTATCGATAC
20226 AATGTATCGATACAAAGAAA
1 AATGTATCGATACAAAGAAA
*
20246 AATGTATCGATACATAGAATTTCCA
1 AATGTATCGATACAAAGAA-----A
* *
20271 GATGTATCGATACACAGAAA
1 AATGTATCGATACAAAGAAA
*
20291 CATGTATCGATACA
1 AATGTATCGATACA
20305 TTTTGGACAT
Statistics
Matches: 50, Mismatches: 4, Indels: 10
0.78 0.06 0.16
Matches are distributed among these distances:
20 32 0.64
25 18 0.36
ACGTcount: A:0.44, C:0.15, G:0.15, T:0.25
Consensus pattern (20 bp):
AATGTATCGATACAAAGAAA
Found at i:22340 original size:15 final size:15
Alignment explanation
Indices: 22320--22350 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
22310 ATTTCGTTTG
*
22320 GAGCTTCTTCATTTT
1 GAGCTTCCTCATTTT
22335 GAGCTTCCTCATTTT
1 GAGCTTCCTCATTTT
22350 G
1 G
22351 GACATTTTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.13, C:0.23, G:0.16, T:0.48
Consensus pattern (15 bp):
GAGCTTCCTCATTTT
Found at i:24183 original size:21 final size:21
Alignment explanation
Indices: 24154--24198 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
24144 AAGTTTTCAT
*
24154 TTTTCTTAGCTAAC-TCATTA
1 TTTTCTTAGCCAACTTCATTA
*
24174 TTTTCATTAGCCAACTTCTTTA
1 TTTTC-TTAGCCAACTTCATTA
24196 TTT
1 TTT
24199 CAACTTGCAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 5 0.24
21 8 0.38
22 8 0.38
ACGTcount: A:0.22, C:0.20, G:0.04, T:0.53
Consensus pattern (21 bp):
TTTTCTTAGCCAACTTCATTA
Found at i:26434 original size:13 final size:13
Alignment explanation
Indices: 26416--26441 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
26406 CAATTTTTTG
26416 TGTATCGATACAT
1 TGTATCGATACAT
26429 TGTATCGATACAT
1 TGTATCGATACAT
26442 ACTTGCTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:29474 original size:475 final size:476
Alignment explanation
Indices: 26824--37701 Score: 14533
Period size: 476 Copynumber: 22.9 Consensus size: 476
26814 GATCCTAACA
* * ** * *
26824 CCAGGCAAAAGAAAAACTTCAATGTCTTTTGTCCGAAAGATGAGAATGTGTTTGTAGTGCTTTAT
1 CCAGGCAAAAGAAAAACTTCAATGTCTTTTATCCTAATCAGGAGAATGTGTTTATAGTGCTTTAT
* **
26889 CAGAAGAAGAATGAAGATCATTACTAGAATCTGTATTTGTCTCATTTGAGGCACGAACTTAGACT
66 CAGAAAAAGAATGAAGATCATTACTAGAATCCATATTTGTCTCATTTGAGGCACGAACTTAGACT
*
26954 TTACAACGATTGGTGGGAAGAAAGCCTTTGTTGCGAAACCAAAGCATGAATATCGTGTATCCTAA
131 TTACAACGATTGGTGGGAAGAAAGCCTTTGTTGCGAAACCAAAGCATCAATATCGTGTATCCTAA
* * * * * *
27019 TGAGAACACTATGTTTATGGTGCCTAA-CTGTGAAAGGAATGGGGATTAGTATGAGTATTCATAT
196 TGAGAAGACTATGTTTATGGTGCCTAATC-CTAAAAAGAATGGGGATTAGTTTGAGTATTCATGT
* * ** *
27083 TTGGCTTATTTAAGAGACATAAACGTTAATTCTATCAAAAACAAT-GCGCAGAAAAGCTTTTCTT
260 TTGGCTTATTTAAGAGAC--AAACTTTGATTCTATCAAAAACGGTAG-GAAGAAAAGCTTTTCTT
*
27147 GAGACACCAAAGCATCAATGTCAGGTATCCTAACAAAGGCAATGTGTTTTGGCTTCCCAATCTTG
322 GAGACACCAAAGCATCAATGTCGGGTATCCTAACAAAGGCAATGTGTTTTGGCTTCCCAATCTTG
* * * * * ** *
27212 AAAAGAAAGGAGACTATTACGAAAATCGATGCTTGTCTTAATCTGGGGATGAACTTTGATTTTAA
387 AAAAGAATGGAGACTGTTAGGAGAATCGATGCTTGTCTTATTCAAGGGATGAACTTTCATTTTAA
** * *
27277 GGAAAATTTGGCAAAGAAAAGGTTT
452 GGAAAATAGGGCGAAGAAAAGATTT
* * * * *
27302 CCATGCAAAAGAAAATCTTCAATGTCATTTATCCTAATGCA-GATAATGCGTTTATAGTGCTTTA
1 CCAGGCAAAAGAAAAACTTCAATGTCTTTTATCCTAAT-CAGGAGAATGTGTTTATAGTGCTTTA
* * * * * * * *
27366 TCACAAAATGAATGAAGATCAATGCCAAAATCTATGTTTGTCTCATTTGAGGCACGAACTTAGAC
65 TCAGAAAAAGAATGAAGATCATTACTAGAATCCATATTTGTCTCATTTGAGGCACGAACTTAGAC
* * **
27431 GTTAAAAAAATTGGTGGGAAGAAAGCCTTTGTTGCGAAACCAAAGCATCAATATCGTGTATCCTA
130 TTTACAACGATTGGTGGGAAGAAAGCCTTTGTTGCGAAACCAAAGCATCAATATCGTGTATCCTA
* * * *
27496 ATGAGAAGACTATGTTTATGGAGCCTAATGCT-AAAAGCAATGGCGATTAGTATGAGTATTCATG
195 ATGAGAAGACTATGTTTATGGTGCCTAATCCTAAAAAG-AATGGGGATTAGTTTGAGTATTCATG
* * * *
27560 TTTGGCTTATTTAAGAGACAAACATTGATTCTAACAAAAACAGCAGGAAGAAAAGCTTTTCTTGA
259 TTTGGCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTAGGAAGAAAAGCTTTTCTTGA
* * *
27625 GACACCAAAGCATCAATTTCCGGTATCCTAACGAAGGCAATGTGTTTTGGCTTCCCAATCTTGAA
324 GACACCAAAGCATCAATGTCGGGTATCCTAACAAAGGCAATGTGTTTTGGCTTCCCAATCTTGAA
* *
27690 AAGAATGGAGACTGTTAGGAGAATCGATGCTTGTCTTATTCAAGGGATGAAATTTCACTTTAAGG
389 AAGAATGGAGACTGTTAGGAGAATCGATGCTTGTCTTATTCAAGGGATGAACTTTCATTTTAAGG
27755 AAAATAGGGCGAAGAAAAGATTT
454 AAAATAGGGCGAAGAAAAGATTT
* * **
27778 CCAGGAAAAAGAAAAAATTCAATGTCTTTTGA-CGAAATCAGGAGAATGTGTTTATAGTGCTTTA
1 CCAGGCAAAAGAAAAACTTCAATGTCTTTT-ATCCTAATCAGGAGAATGTGTTTATAGTGCTTTA
*
27842 TCAAAAAAAGAATGAAGATCATTACTAGAATCCATATTTGTCTCATTTGAGGCACGAACTTAGAC
65 TCAGAAAAAGAATGAAGATCATTACTAGAATCCATATTTGTCTCATTTGAGGCACGAACTTAGAC
* * *
27907 TTTACAACAATTGGTGGGAAGAAAGCCATTGTTGCGAAACCAGAGCATCAATATCGTGTATCCTA
130 TTTACAACGATTGGTGGGAAGAAAGCCTTTGTTGCGAAACCAAAGCATCAATATCGTGTATCCTA
* * *
27972 ATGAGAAGACAATATTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTGTGAGTATTCATGT
195 ATGAGAAGACTATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTTTGAGTATTCATGT
* * ** * *
28037 TTGTCTTATTTAAGAGACAAACTTTGATTCCAT-AACAAACGACAAGAACAAAAGCTTTTCTTGA
260 TTGGCTTATTTAAGAGACAAACTTTGATTCTATCAA-AAACGGTAGGAAGAAAAGCTTTTCTTGA
* ** ** *
28101 GTCACCAAAGCATCAATGTCATGTATCCTAATGAAGGCAATGTGTTTTGGCTTTCCAATCTTGAA
324 GACACCAAAGCATCAATGTCGGGTATCCTAACAAAGGCAATGTGTTTTGGCTTCCCAATCTTGAA
* * * *
28166 AAGAATGGAAACTGTTAGGAGAATTGATGCCTGTCTTATTCAAGGGATGAACTTTCATTTTAAGA
389 AAGAATGGAGACTGTTAGGAGAATCGATGCTTGTCTTATTCAAGGGATGAACTTTCATTTTAAGG
*
28231 AAAAGAGGGCGAAGAAAAGATTT
454 AAAATAGGGCGAAGAAAAGATTT
* * * *
28254 CAATGCAAAAGAAAAACTACAATGTCTTTTATCCTAATGAGGAGAATGTGTTTATAGTGCTTTAT
1 CCAGGCAAAAGAAAAACTTCAATGTCTTTTATCCTAATCAGGAGAATGTGTTTATAGTGCTTTAT
* * ** *
28319 CAGAAAAAGTATGAAGATCATTACTAGAATACATATTCCTCCCATTTGAGGCACGAACTTAGACT
66 CAGAAAAAGAATGAAGATCATTACTAGAATCCATATTTGTCTCATTTGAGGCACGAACTTAGACT
* * * *
28384 CTACAACGAATGGTGGGAAGAAAGCCATTGTTGCGAAACCAAAGTATCAATATCGTGTATCCTAA
131 TTACAACGATTGGTGGGAAGAAAGCCTTTGTTGCGAAACCAAAGCATCAATATCGTGTATCCTAA
* * ** * * * *
28449 CGAGAAGACTATGTATATGGTGCCTAAAACTAAAAGGAATGAGGATTAGTTTGAGCATTAATGTT
196 TGAGAAGACTATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTTTGAGTATTCATGTT
* **
28514 TGGCTTATTTAAGAGACAAACGTTGATTCTATCAAAAAC-G-ACGCGAAGAAAAGCTTTTCCCGA
261 TGGCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTA-G-GAAGAAAAGCTTTTCTTGA
* * *
28577 GACACCAAAGCATCAATATCGGGTATCCTAACCAAGGCAATGAGTTTTGGCTTCCCAATCTTGAA
324 GACACCAAAGCATCAATGTCGGGTATCCTAACAAAGGCAATGTGTTTTGGCTTCCCAATCTTGAA
* * *
28642 AAGAAAGGAGACTGTTAGGAGAATCGATGCCTGTCTTATTCAAGGGATGAACTTTCTTTTTAAGG
389 AAGAATGGAGACTGTTAGGAGAATCGATGCTTGTCTTATTCAAGGGATGAACTTTCATTTTAAGG
28707 AAAATAGGGCGAAGAAAAGATTT
454 AAAATAGGGCGAAGAAAAGATTT
* * ** *
28730 CCAGGCAAAAGAAAAACTTCAATGTCTGTTGTCCTAAAGAGGAGAATGTGTTTGTAGTGCTTTAT
1 CCAGGCAAAAGAAAAACTTCAATGTCTTTTATCCTAATCAGGAGAATGTGTTTATAGTGCTTTAT
*
28795 CAGAAAAAGAATGAAGATCGTTACTAGAATCCATATTTGTCTCATTTGAGGCACGAACTTAGACT
66 CAGAAAAAGAATGAAGATCATTACTAGAATCCATATTTGTCTCATTTGAGGCACGAACTTAGACT
* * * *
28860 TTACAACGATTGGTGGGAA-AGTAGCCTTTGTTGCGCAACCAAAGCGTCAATAACGTGTATCCTA
131 TTACAACGATTGGTGGGAAGA-AAGCCTTTGTTGCGAAACCAAAGCATCAATATCGTGTATCCTA
* * * *
28924 ATGAGAAGACAATGTTTATGGTGCCTTATCCTAAAAGGAATCGGGATTAGTTTGAGTATTCATGT
195 ATGAGAAGACTATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTTTGAGTATTCATGT
* * *
28989 TAGGCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTAGAAAGAAATGCTTTTCTTGAG
260 TTGGCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTAGGAAGAAAAGCTTTTCTTGAG
* *
29054 ACACCAAAGCATTAAGGTCGGGTATCCTAACAAAGGCAATGTGTTTTGGCTTCCCAATCTTGAAA
325 ACACCAAAGCATCAATGTCGGGTATCCTAACAAAGGCAATGTGTTTTGGCTTCCCAATCTTGAAA
* * * * *
29119 GGAATGGAGACTGTTAGGAGAATAGATGCTTATCTTATTCAAGGGATGAACTTTCTTTTTAAAGA
390 AGAATGGAGACTGTTAGGAGAATCGATGCTTGTCTTATTCAAGGGATGAACTTTCATTTTAAGGA
29184 AAATAGGGCGAAGAAAAGATTT
455 AAATAGGGCGAAGAAAAGATTT
* * *
29206 CCAGGAAAAAG-AAAGCTTCAATGTCTTTTGTCCTAATCAGGAGAATGTGTTTATAGTGCTTTAT
1 CCAGGCAAAAGAAAAACTTCAATGTCTTTTATCCTAATCAGGAGAATGTGTTTATAGTGCTTTAT
* * * * * *
29270 AAAAAAAAGAATGGAGGTCATTACTAGAATCCATATTTGTCTCATTTGAGGAACGCACTTAGACT
66 CAGAAAAAGAATGAAGATCATTACTAGAATCCATATTTGTCTCATTTGAGGCACGAACTTAGACT
29335 TTACAACGATTGGTGGGAAGAAAGCCTTTGTTGCGAAACCAAAGCATCAATATCGTGTATCCTAA
131 TTACAACGATTGGTGGGAAGAAAGCCTTTGTTGCGAAACCAAAGCATCAATATCGTGTATCCTAA
* * * ** * ** * *
29400 TGAGAAAACTATGTTTATGGTGCCAAATCATGGAAAGATTGGGGATTAGTAAGTGTATTCATATT
196 TGAGAAGACTATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTTTGAGTATTCATGTT
* * * * *
29465 TGTCTTATTTGAGAGACTAACTTTGATTCTATCAAAAACGG-AGGGAAGAAAAACATTTCTTGAG
261 TGGCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTA-GGAAGAAAAGCTTTTCTTGAG
*** * *
29529 ACACCAAAGCATCAATGTTATGTATCCTAACGAAGGCAATGTGTTTTCGCTTCCCAATCTTGAAA
325 ACACCAAAGCATCAATGTCGGGTATCCTAACAAAGGCAATGTGTTTTGGCTTCCCAATCTTGAAA
* *
29594 AGAATGGAGACTGTTAGGAGAATCAATGCTTGTTTTATTCAAGGGATGAACTTTCATTTTAAGGA
390 AGAATGGAGACTGTTAGGAGAATCGATGCTTGTCTTATTCAAGGGATGAACTTTCATTTTAAGGA
29659 AAATAGGGCGAAGAAAAGATTT
455 AAATAGGGCGAAGAAAAGATTT
* * *
29681 CTAGGAAAAAGAAAATA-TTCAATGTCTTTTGTCCTAATCAGGAGAATGTGTTTATAGTGCTTTA
1 CCAGGCAAAAGAAAA-ACTTCAATGTCTTTTATCCTAATCAGGAGAATGTGTTTATAGTGCTTTA
*
29745 TCAAAAAAAGAATGAATGATCATTACTAGAATCCATATTTGTCTCATTTGAGGCACGAACTTAGA
65 TCAGAAAAAGAATGAA-GATCATTACTAGAATCCATATTTGTCTCATTTGAGGCACGAACTTAGA
* * *
29810 CTTTACAACAATTGGTGGGAAGAAAGGCTTTGTTGCGAAACCAGAGCATCAATATCGTGTATCCT
129 CTTTACAACGATTGGTGGGAAGAAAGCCTTTGTTGCGAAACCAAAGCATCAATATCGTGTATCCT
* * * * * *
29875 AATGAGAAGTCAATGTTTATGGTGCCTAATCTTAAAAAGAATAGGGATTAGTGTGGGTATTCATG
194 AATGAGAAGACTATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTTTGAGTATTCATG
** * * *
29940 TTTGTTTTATTTAAAAGACAAACATTGATTCTATCAAAAACGAT-GCGAAGAAAAGCTTTTCTTG
259 TTTGGCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTAG-GAAGAAAAGCTTTTCTTG
* *
30004 AGACACCAAAGCATCAATATCGGGTATCATAACAAAGGCAATGTGTTTTGGCTTCCCAATCTTGA
323 AGACACCAAAGCATCAATGTCGGGTATCCTAACAAAGGCAATGTGTTTTGGCTTCCCAATCTTGA
* *
30069 AAAGAATGGAAACCGTTAGGAGAATCGATGCTTGTCTTATTCAAGGGATGAACTTTCATTTTAAG
388 AAAGAATGGAGACTGTTAGGAGAATCGATGCTTGTCTTATTCAAGGGATGAACTTTCATTTTAAG
*
30134 AAAAATAGGGCGAAGAAAAGATTT
453 GAAAATAGGGCGAAGAAAAGATTT
* * * * *
30158 TCATGCAAAAGAAAAACTTCAATGTCGTTTATCCTAATGAGGAGAATGTGTTTATTGTGCTTTAT
1 CCAGGCAAAAGAAAAACTTCAATGTCTTTTATCCTAATCAGGAGAATGTGTTTATAGTGCTTTAT
* * * * *
30223 CAGAAAAAGAATGAAGATCATTGCTAGAATGCATATTTGCCTCATTTGAGGCACAAACTTATACT
66 CAGAAAAAGAATGAAGATCATTACTAGAATCCATATTTGTCTCATTTGAGGCACGAACTTAGACT
* * * *
30288 TTACAACGAATGGTGGGAAGAAAGCCGTTGTT-CTGAAACCAAAGTACCAATATCGTGTATCCTA
131 TTACAACGATTGGTGGGAAGAAAGCCTTTGTTGC-GAAACCAAAGCATCAATATCGTGTATCCTA
* ** * *
30352 ATGAGAAGACAATGTTTATGGCACCTAATCCTAAAAAGAATGAGGATTAGTTTGAGTATTAATGT
195 ATGAGAAGACTATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTTTGAGTATTCATGT
30417 TTGGCTTATTTAAGAGA-AAA-TGTTGATTCTATCAAAAAC-G-ACGCGAAGAAAAGCTTTTCTT
260 TTGGCTTATTTAAGAGACAAACT-TTGATTCTATCAAAAACGGTA-G-GAAGAAAAGCTTTTCTT
* * *
30478 GAGACACCAAAGCATCAATATCGGGTATCATAACAAAGGCAATGTGTTTTGGCTTCCCAGT-TTA
322 GAGACACCAAAGCATCAATGTCGGGTATCCTAACAAAGGCAATGTGTTTTGGCTTCCCAATCTT-
* *
30542 GAAAAGAAGGGAGACTGTTAGGAGAATCGATGCCTGTCTTAATT-AAGGGATGAACTTTCATTTT
386 GAAAAGAATGGAGACTGTTAGGAGAATCGATGCTTGTCTT-ATTCAAGGGATGAACTTTCATTTT
30606 AAGGAAAATAGGGCGAAGAAAAGATTT
450 AAGGAAAATAGGGCGAAGAAAAGATTT
* * * ** * * *
30633 CCGGGCAAAAGAAAAACTTCAATGTCTTTTGTCCAAAAGACGAGAAAGTGTTTGTAGTGCTTTAT
1 CCAGGCAAAAGAAAAACTTCAATGTCTTTTATCCTAATCAGGAGAATGTGTTTATAGTGCTTTAT
* * *
30698 CAGAAAAAGAATGAAGATCATTACTAGAATCCGTATTTGTCTCATTCGAGGCATGAACTTAGACT
66 CAGAAAAAGAATGAAGATCATTACTAGAATCCATATTTGTCTCATTTGAGGCACGAACTTAGACT
* * *
30763 TTACAACGATTGGTGGGAAGAAAGCCTTTGTTGTGAAACCAAAGCATGAATATAGTGTATCCTAA
131 TTACAACGATTGGTGGGAAGAAAGCCTTTGTTGCGAAACCAAAGCATCAATATCGTGTATCCTAA
* * * * * *
30828 TGAGAACACTATGTTTATGGTGCCTAA-CTGTGAAAGGAATGGGGATTAGTATGAGTATTCATTT
196 TGAGAAGACTATGTTTATGGTGCCTAATC-CTAAAAAGAATGGGGATTAGTTTGAGTATTCATGT
* * * * * * **
30892 TTGTCTTACTTGAGAGACTATCTTTGACTCTATCAAAAACGGCGGGAAG-AAAGCTTTTCTTGAG
260 TTGGCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTAGGAAGAAAAGCTTTTCTTGAG
* *
30956 ACACCAAAGCATCAA--TCGTGTATCCTAACGAAGGCAATGTGTTTTGGCTTCCCAATCTTGAAA
325 ACACCAAAGCATCAATGTCGGGTATCCTAACAAAGGCAATGTGTTTTGGCTTCCCAATCTTGAAA
* *
31019 AGAATGGAGACTGTTAGGAGAATCGATGCTTGTCTTATTCAAGGGATGAAATTTTATTTTAAGGA
390 AGAATGGAGACTGTTAGGAGAATCGATGCTTGTCTTATTCAAGGGATGAACTTTCATTTTAAGGA
*
31084 AAATAGGGAGAAGAAAAGATTT
455 AAATAGGGCGAAGAAAAGATTT
*
31106 CCAGG-AAAA-AAAAACTTCAATGTCTTTTGTCCTAATCAGGAGAATGTGTTTATAGTGCTTTAT
1 CCAGGCAAAAGAAAAACTTCAATGTCTTTTATCCTAATCAGGAGAATGTGTTTATAGTGCTTTAT
* * * *
31169 CAGAAAAAGAAGGAAGATCATTACTAGAATACATACTTGTCTCATTTGAGGCATGAACTTAGACT
66 CAGAAAAAGAATGAAGATCATTACTAGAATCCATATTTGTCTCATTTGAGGCACGAACTTAGACT
* *
31234 TTACAACGATTGGTGGGAAGAAAGCCTTTGTTGCGAAACCAAAGCATCAATATCATGTAACCTAA
131 TTACAACGATTGGTGGGAAGAAAGCCTTTGTTGCGAAACCAAAGCATCAATATCGTGTATCCTAA
* * * *
31299 TGGGAAAACTATGTTTATGGTGCCTAATCCTAAAAAGAATGAGGATTAGTTTGAGTATTAATGTT
196 TGAGAAGACTATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTTTGAGTATTCATGTT
* * ** *
31364 TGGCTTATTCAAGAGACAAA-TGTTGATTCTATAAAAAAACAATGGGAAGAAAAGCTTTTCTTGA
261 TGGCTTATTTAAGAGACAAACT-TTGATTCTAT-CAAAAACGGTAGGAAGAAAAGCTTTTCTTGA
* **
31428 GACACCAAAGCATCAATGTCTGGTATCCTAACAAAGGCAATGTGTTTTGGCTTCCCAATCTCAAA
324 GACACCAAAGCATCAATGTCGGGTATCCTAACAAAGGCAATGTGTTTTGGCTTCCCAATCTTGAA
* * * * * *
31493 AAGAAAGGAGACTGTTATGAGAATCGATGCTTGTCTTATTTAGGGGATGAAATTTAATTTTAAGG
389 AAGAATGGAGACTGTTAGGAGAATCGATGCTTGTCTTATTCAAGGGATGAACTTTCATTTTAAGG
* ** * *
31558 ATAATTTGGCAAAGCAAAGATTT
454 AAAATAGGGCGAAGAAAAGATTT
* * * * * * * *
31581 CCATGCAAAAGAAAATCGTCAATGTCATTTACCCTAATGC-GAAGAATCTGTTTATAGTGCCTTA
1 CCAGGCAAAAGAAAAACTTCAATGTCTTTTATCCTAAT-CAGGAGAATGTGTTTATAGTGCTTTA
* * * * * *
31645 TCACAAAAAGAATGAAGATCATTACTAGAATCTATGTTTGTCTCGTTTGTGGCACGAACTTAGAA
65 TCAGAAAAAGAATGAAGATCATTACTAGAATCCATATTTGTCTCATTTGAGGCACGAACTTAGAC
** ***
31710 TTTACAAAAATTGGAAAGAAGAAAGCCTTTGTTGCGAAACCAAAGCATCAATATCGTGTATCCTA
130 TTTACAACGATTGGTGGGAAGAAAGCCTTTGTTGCGAAACCAAAGCATCAATATCGTGTATCCTA
* * *
31775 ATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGAATTAGTGTGAGTATTCATGT
195 ATGAGAAGACTATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTTTGAGTATTCATGT
* * *
31840 TTGTCTTATTTAAGAGACAAATTTTTATTCTATCAAAAAC-G-ACGAGAAGAAAAGCTTTTCTTG
260 TTGGCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTA-G-GAAGAAAAGCTTTTCTTG
* ** * *
31903 AGACACCAAAGCAGCAATGTCATGTATCCTAACGAAGGCAATGCGTTTTGGCTTCCCAATCTTGA
323 AGACACCAAAGCATCAATGTCGGGTATCCTAACAAAGGCAATGTGTTTTGGCTTCCCAATCTTGA
* * *
31968 AAAGTATGGAGACTGTTAGGAGAATCGATGTTTGTCTTATTCAAGGGATGAACTTTCATTTCAAG
388 AAAGAATGGAGACTGTTAGGAGAATCGATGCTTGTCTTATTCAAGGGATGAACTTTCATTTTAAG
* * *
32033 AAAAATGGGGCGAAGAAAAAATTT
453 GAAAATAGGGCGAAGAAAAGATTT
* * *
32057 CCATGCAAAAGAAAAACTTCAATGTCTTTTATCCAAATGAGGAGAATGTGTTTATAGTGCTTTAT
1 CCAGGCAAAAGAAAAACTTCAATGTCTTTTATCCTAATCAGGAGAATGTGTTTATAGTGCTTTAT
* * * * *
32122 TAGAAAAAGAGTGAAGATCATTACTATAATACATATTTGTCTCATTTAAGGCACGAACTTAGACT
66 CAGAAAAAGAATGAAGATCATTACTAGAATCCATATTTGTCTCATTTGAGGCACGAACTTAGACT
* * * *
32187 TTACAACTATTGGTGGGAAGAAAGCCTTTGTTGCAAAACCAAAGCATCAATATCATGCATCCTAA
131 TTACAACGATTGGTGGGAAGAAAGCCTTTGTTGCGAAACCAAAGCATCAATATCGTGTATCCTAA
* * * *
32252 TGAGAAGACAATGTTTATGGTGCCTAATCCTAAAAAGAATGAGGATTAGTTTGAGCATTAATGTT
196 TGAGAAGACTATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTTTGAGTATTCATGTT
* **
32317 TGGCTTATTTAAGAGACAAACGTTGATTCTATCAAAAAC-G-ACGCGAAGAAAAGCTTTTCCCGA
261 TGGCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTA-G-GAAGAAAAGCTTTTCTTGA
* * *
32380 GACACCAAAGCATCAATATCGGGTATCCTAACCAAGGCAATGAGTTTTGGCTTCCCAATCTTGAA
324 GACACCAAAGCATCAATGTCGGGTATCCTAACAAAGGCAATGTGTTTTGGCTTCCCAATCTTGAA
* * *
32445 AAGAAAGGAGACTGTTAGGAGAATCGATGCCTGTCTTATTCAAGGGATGAACTTTCTTTTTAAGG
389 AAGAATGGAGACTGTTAGGAGAATCGATGCTTGTCTTATTCAAGGGATGAACTTTCATTTTAAGG
32510 AAAATAGGGCGAAGAAAAGATTT
454 AAAATAGGGCGAAGAAAAGATTT
* * ** *
32533 CCAGGCAAAAGAAAAACTTCAATGTCTGTTGTCCTAAAGAGGAGAATGTGTTTGTAGTGCTTTAT
1 CCAGGCAAAAGAAAAACTTCAATGTCTTTTATCCTAATCAGGAGAATGTGTTTATAGTGCTTTAT
* *
32598 CAGAAAAAGAATGAAGATCGTTACTAGAATCCATATTTGTCTCATTTGAGGCATGAACTTAGACT
66 CAGAAAAAGAATGAAGATCATTACTAGAATCCATATTTGTCTCATTTGAGGCACGAACTTAGACT
** * * *
32663 TTACAACGATTGGTGGGAAGGTAGCCTTTGTTGCGCAACCAAAGCGTCAATAACGTGTATCCTAA
131 TTACAACGATTGGTGGGAAGAAAGCCTTTGTTGCGAAACCAAAGCATCAATATCGTGTATCCTAA
* * * * *
32728 TGAGAAGACAATGTTTATGGTGCCTTATCCTAAAAGGAATCGGGATTAGTTTGAGTATTCTTGTT
196 TGAGAAGACTATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTTTGAGTATTCATGTT
* * *
32793 AGGCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTAGAAAGAAATGCTTTTCTTGAGA
261 TGGCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTAGGAAGAAAAGCTTTTCTTGAGA
* * * *
32858 CGCCAAAGCATTAAGGTCGGGTATCCTAACAAAGGCAATGTGTTTTGGCTTCCCAATCTTGAAAG
326 CACCAAAGCATCAATGTCGGGTATCCTAACAAAGGCAATGTGTTTTGGCTTCCCAATCTTGAAAA
* * * *
32923 GAATGGAGACTGTTAGGAGAATAGATGCTTATCTTATTCAAGGGATGAACTTTCTTTTTAAAGAA
391 GAATGGAGACTGTTAGGAGAATCGATGCTTGTCTTATTCAAGGGATGAACTTTCATTTTAAGGAA
32988 AATAGGGCGAAGAAAAGATTT
456 AATAGGGCGAAGAAAAGATTT
* * * *
33009 CCAGGAAAAAG-AAAGCTTCAATGTCTTCTGTCCTAATCAGGAGAATGTGTTTATAGTGCTTTAT
1 CCAGGCAAAAGAAAAACTTCAATGTCTTTTATCCTAATCAGGAGAATGTGTTTATAGTGCTTTAT
* * * * *
33073 AAAAAAAAGAATGGAGGTCATTACTAGAATCCATATTTGTCTCATTTGAGGAACGAACTTAGACT
66 CAGAAAAAGAATGAAGATCATTACTAGAATCCATATTTGTCTCATTTGAGGCACGAACTTAGACT
33138 TTACAACGATTGGTGGGAAGAAAGCCTTTGTTGCGAAACCAAAGCATCAATATCGTGTATCCTAA
131 TTACAACGATTGGTGGGAAGAAAGCCTTTGTTGCGAAACCAAAGCATCAATATCGTGTATCCTAA
* * * ** * ** * *
33203 TGAGAAAACTATGTTTATGGTGCCAAATCATGGAAAGATTGGGGATTAGTAAGTGTATTCATATT
196 TGAGAAGACTATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTTTGAGTATTCATGTT
* * * * *
33268 TGTCTTATTTGAGAGACTAACTTTGATTCTATCAAAAACGG-AGGGAAGAAAAACATTTCTTGAG
261 TGGCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTA-GGAAGAAAAGCTTTTCTTGAG
*** * *
33332 ACACCAAAGCATCAATGTTATGTATCCTAACGAAGGCAATGTGTTTTCGCTTCCCAATCTTGAAA
325 ACACCAAAGCATCAATGTCGGGTATCCTAACAAAGGCAATGTGTTTTGGCTTCCCAATCTTGAAA
* *
33397 AGAATGGAGACTGTTAGGAGAATCAATGCTTGTTTTATTCAAGGGATGAACTTTCATTTTAAGGA
390 AGAATGGAGACTGTTAGGAGAATCGATGCTTGTCTTATTCAAGGGATGAACTTTCATTTTAAGGA
33462 AAATAGGGCGAAGAAAAGATTT
455 AAATAGGGCGAAGAAAAGATTT
* * *
33484 CTAGGAAAAAGAAAATA-TTCAATGTCTTTTGTCCTAATCAGGAGAATGTGTTTATAGTGCTTTA
1 CCAGGCAAAAGAAAA-ACTTCAATGTCTTTTATCCTAATCAGGAGAATGTGTTTATAGTGCTTTA
*
33548 TCAAAAAAAGAATGAATGATCATTACTAGAATCCATATTTGTCTCATTTGAGGCACGAACTTAGA
65 TCAGAAAAAGAATGAA-GATCATTACTAGAATCCATATTTGTCTCATTTGAGGCACGAACTTAGA
* * *
33613 CTTTACAACAATTGGTGGGAAGAAAGGCTTTGTTGCGAAACCAGAGCATCAATATCGTGTATCCT
129 CTTTACAACGATTGGTGGGAAGAAAGCCTTTGTTGCGAAACCAAAGCATCAATATCGTGTATCCT
* * * * * *
33678 AATGAGAAGTCAATGTTTATGGTGCCTAATCTTAAAAAGAATAGGGATTAGTGTGGGTATTCATG
194 AATGAGAAGACTATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTTTGAGTATTCATG
** * * *
33743 TTTGTTTTATTTAAAAGACAAACATTGATTCTATCAAAAACGAT-GCGAAGAAAAGCTTTTCTTG
259 TTTGGCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTAG-GAAGAAAAGCTTTTCTTG
* *
33807 AGACACCAAAGCATCAATATCGGGTATCATAACAAAGGCAATGTGTTTTGGCTTCCCAATCTTGA
323 AGACACCAAAGCATCAATGTCGGGTATCCTAACAAAGGCAATGTGTTTTGGCTTCCCAATCTTGA
* *
33872 AAAGAATGGAAACCGTTAGGAGAATCGATGCTTGTCTTATTCAAGGGATGAACTTTCATTTTAAG
388 AAAGAATGGAGACTGTTAGGAGAATCGATGCTTGTCTTATTCAAGGGATGAACTTTCATTTTAAG
*
33937 AAAAATAGGGCGAAGAAAAGATTT
453 GAAAATAGGGCGAAGAAAAGATTT
* * * *
33961 TCATGCAAAAGAAAAACTTCAATGTCGTTTATCCTAATGAGGAGAATGTGTTTATAGTGCTTTAT
1 CCAGGCAAAAGAAAAACTTCAATGTCTTTTATCCTAATCAGGAGAATGTGTTTATAGTGCTTTAT
*
34026 CAAAAAAAGAATGAATGATCATTACTAGAATCCATATTTGTCTCATTTGAGGCACGAACTTAGAC
66 CAGAAAAAGAATGAA-GATCATTACTAGAATCCATATTTGTCTCATTTGAGGCACGAACTTAGAC
* * *
34091 TTTACAACAATTGGTGGGAAGAAAGGCTTTGTTGCGAAACCAGAGCATCAATATCGTGTATCCTA
130 TTTACAACGATTGGTGGGAAGAAAGCCTTTGTTGCGAAACCAAAGCATCAATATCGTGTATCCTA
* * * * * *
34156 ATGAGAAGTCAATGTTTATGGTGCCTAATCTTAAAAAGAATAGGGATTAGTGTGGGTATTCATGT
195 ATGAGAAGACTATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTTTGAGTATTCATGT
** * * *
34221 TTGTTTTATTTAAAAGACAAACATTGATTCTATC-AAAACGAT-GCGAAGAAAAGCTTTTCTTGA
260 TTGGCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTAG-GAAGAAAAGCTTTTCTTGA
* *
34284 GACACCAAAGCATCAATATCGGGTATCATAACAAAGGCAATGTGTTTTGGCTTCCCAATCTTGAA
324 GACACCAAAGCATCAATGTCGGGTATCCTAACAAAGGCAATGTGTTTTGGCTTCCCAATCTTGAA
* * * *
34349 AAGAATGGAAACCGTTAGGAGAATCGATGCTTGTCTTATTCAAGGGATGAAATTTTATTTTAAGG
389 AAGAATGGAGACTGTTAGGAGAATCGATGCTTGTCTTATTCAAGGGATGAACTTTCATTTTAAGG
*
34414 AAAATAGGGAGAAGAAAAGATTT
454 AAAATAGGGCGAAGAAAAGATTT
*
34437 CCAGG-AAAA-AAAAACTTCAATGTCTTTTGTCCTAATCAGGAGAATGTGTTTATAGTGCTTTAT
1 CCAGGCAAAAGAAAAACTTCAATGTCTTTTATCCTAATCAGGAGAATGTGTTTATAGTGCTTTAT
* * * *
34500 CAGAAAAAGAAGGAAGATCATTACTAGAATACATACTTGTCTCATTTGAGGCATGAACTTAGACT
66 CAGAAAAAGAATGAAGATCATTACTAGAATCCATATTTGTCTCATTTGAGGCACGAACTTAGACT
* *
34565 TTACAACGATTGGTGGGAAGAAAGCCTTTGTTGCGAAACCAAAGCATCAATATCATGTAACCTAA
131 TTACAACGATTGGTGGGAAGAAAGCCTTTGTTGCGAAACCAAAGCATCAATATCGTGTATCCTAA
* * * *
34630 TGGGAAAACTATGTTTATGGTGCCTAATCCTAAAAAGAATGAGGATTAGTTTGAGTATTAATGTT
196 TGAGAAGACTATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTTTGAGTATTCATGTT
* * ** *
34695 TGGCTTATTCAAGAGACAAA-TGTTGATTCTATAAAAAAACAATGGGAAGAAAAGCTTTTCTTGA
261 TGGCTTATTTAAGAGACAAACT-TTGATTCTAT-CAAAAACGGTAGGAAGAAAAGCTTTTCTTGA
* **
34759 GACACCAAAGCATCAATGTCTGGTATCCTAACAAAGGCAATGTGTTTTGGCTTCCCAATCTCAAA
324 GACACCAAAGCATCAATGTCGGGTATCCTAACAAAGGCAATGTGTTTTGGCTTCCCAATCTTGAA
* * * * * *
34824 AAGAAAGGAGACTGTTATGAGAATCGATGCTTGTCTTATTTAGGGGATGAAATTTGATTTTAAGG
389 AAGAATGGAGACTGTTAGGAGAATCGATGCTTGTCTTATTCAAGGGATGAACTTTCATTTTAAGG
* ** * *
34889 ATAATTTGGCAAAGCAAAGATTT
454 AAAATAGGGCGAAGAAAAGATTT
* * * * * * * *
34912 CCATGCAAAAGAAAATCGTCAATGTCATTTACCCTAATGC-GAAGAATCTGTTTATAGTGCCTTA
1 CCAGGCAAAAGAAAAACTTCAATGTCTTTTATCCTAAT-CAGGAGAATGTGTTTATAGTGCTTTA
* * * * * *
34976 TCACAAAAAGAATGAAGATCATTACTAGAATCTATGTTTGTCTCGTTTGTGGCACGAACTTAGAA
65 TCAGAAAAAGAATGAAGATCATTACTAGAATCCATATTTGTCTCATTTGAGGCACGAACTTAGAC
** ***
35041 TTTACAAAAATTGGAAAGAAGAAAGCCTTTGTTGCGAAACCAAAGCATCAATATCGTGTATCCTA
130 TTTACAACGATTGGTGGGAAGAAAGCCTTTGTTGCGAAACCAAAGCATCAATATCGTGTATCCTA
* * * *
35106 AAGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGAATTAGTGTGAGTATTCATGT
195 ATGAGAAGACTATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTTTGAGTATTCATGT
* * * * *
35171 TTGTCTTATTTAAGAGACAAATTTTTATTTTATCAAAGAC-G-ACGAGAAGAAAAGCTTTTCTTG
260 TTGGCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTA-G-GAAGAAAAGCTTTTCTTG
* ** * *
35234 AGACACCAAAGCAGCAATGTCATGTATCCTAACGAAGGCAATGCGTTTTGGCTTCCCAATCTTGA
323 AGACACCAAAGCATCAATGTCGGGTATCCTAACAAAGGCAATGTGTTTTGGCTTCCCAATCTTGA
* * *
35299 AAAGTATGGAGACTGTTAGGAGAATCGATGTTTGTCTTATTCAAGGGATGAACTTTCATTTCAAG
388 AAAGAATGGAGACTGTTAGGAGAATCGATGCTTGTCTTATTCAAGGGATGAACTTTCATTTTAAG
* * *
35364 AAAAATGGGGCGAAGAAAAAATTT
453 GAAAATAGGGCGAAGAAAAGATTT
* * *
35388 CCATGCAAAAGAAAAACTTCAATGTCTTTTATCCAAATGAGGAGAATGTGTTTATAGTGCTTTAT
1 CCAGGCAAAAGAAAAACTTCAATGTCTTTTATCCTAATCAGGAGAATGTGTTTATAGTGCTTTAT
* * * * *
35453 TAGAAAAAGAGTGAAGATCATTACTATAATACATATTTGTCTCATTTAAGGCACGAACTTAGACT
66 CAGAAAAAGAATGAAGATCATTACTAGAATCCATATTTGTCTCATTTGAGGCACGAACTTAGACT
* *
35518 TTACAACGATTGGTGGGAAGAAAGCCTTTGTTGCGAAACCAAAGCATCAATATCATGCATCCTAA
131 TTACAACGATTGGTGGGAAGAAAGCCTTTGTTGCGAAACCAAAGCATCAATATCGTGTATCCTAA
* * *
35583 TGAGAAGACAATGTTTATGGTGCCTAATCCTAAAAAGAATGAGGATTAGTTTGAGTATTAATGTT
196 TGAGAAGACTATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTTTGAGTATTCATGTT
* ** * *
35648 TGGCTTATTCAAGAGACAAA-TGTTGATTCTATCAAAAACAATGGGAAGAAAAGCTTTTCATGAG
261 TGGCTTATTTAAGAGACAAACT-TTGATTCTATCAAAAACGGTAGGAAGAAAAGCTTTTCTTGAG
*
35712 ACACCAAAGCATCAATGTCGAGTATCCTAACAAAGGCAATGTGTTTTGGCTTCCCAATCTTGAAA
325 ACACCAAAGCATCAATGTCGGGTATCCTAACAAAGGCAATGTGTTTTGGCTTCCCAATCTTGAAA
* * *
35777 AGAATGGAGGCTGTTAGGAGAATCGATGCTTGTCTTATTCAACGGATGAACTTTCATTTTAAGAA
390 AGAATGGAGACTGTTAGGAGAATCGATGCTTGTCTTATTCAAGGGATGAACTTTCATTTTAAGGA
35842 AAATAGGGCGAAGAAAAGATTT
455 AAATAGGGCGAAGAAAAGATTT
* * *
35864 CCATGCAAAAGAAAAACTTCAATGTCTTTTATCCAAATTAGGAGAATGTGTTTATAGTGCTTTAT
1 CCAGGCAAAAGAAAAACTTCAATGTCTTTTATCCTAATCAGGAGAATGTGTTTATAGTGCTTTAT
* * * * * * *
35929 CAGAAAAAGAATGAAGATTATTAGTAGAATACGTACTTGTCTCATTTGAGACACAAACTTAGACT
66 CAGAAAAAGAATGAAGATCATTACTAGAATCCATATTTGTCTCATTTGAGGCACGAACTTAGACT
* * * *
35994 TTACAACGATTGGTGGGAAGAAAGCCTTTGTTGTGAAACCAGAGCATCAATATAGTGCATCCTAA
131 TTACAACGATTGGTGGGAAGAAAGCCTTTGTTGCGAAACCAAAGCATCAATATCGTGTATCCTAA
* * * *
36059 TGAGAAGACTATGTTTATGGTGCCTAATCTTAAAAGGAATGAGGATTAGTTTGAGTATTAATGTT
196 TGAGAAGACTATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTTTGAGTATTCATGTT
* * * ** * *
36124 TGGCTTATTCAGGAGACAAACGTTGATTCTATCAAAAACAACT-GCAATAAAAGCTTTTCTTGAG
261 TGGCTTATTTAAGAGACAAACTTTGATTCTATCAAAAAC-GGTAGGAAGAAAAGCTTTTCTTGAG
** *
36188 ACACCTTAGCATCAATGTCGAGTATCCTAACAAAGGCAATGTGTTTTGGCTTCCCAATCTTGAAA
325 ACACCAAAGCATCAATGTCGGGTATCCTAACAAAGGCAATGTGTTTTGGCTTCCCAATCTTGAAA
* * *
36253 AGAAAGGAGACTGTT-GCGAGAATCGCTGCTTGTCTTATTCAAGGGATGAACTTTGATTTTAAGG
390 AGAATGGAGACTGTTAG-GAGAATCGATGCTTGTCTTATTCAAGGGATGAACTTTCATTTTAAGG
* ** * *
36317 ATAATTTGGCAAAGCAAAGATTT
454 AAAATAGGGCGAAGAAAAGATTT
* * * * * * * *
36340 CCATGCAAAAGAAAATCATCAATGTCATTTATCCTAATGAAGAGAATGCGTTTATAGTGCTTTAC
1 CCAGGCAAAAGAAAAACTTCAATGTCTTTTATCCTAATCAGGAGAATGTGTTTATAGTGCTTTAT
* * * * * * * * * *
36405 CACAAGAACAATAAAGATCATTACCAGAATCTATGTTTGTCTCATATGAGGCACGAACATAGAAT
66 CAGAAAAAGAATGAAGATCATTACTAGAATCCATATTTGTCTCATTTGAGGCACGAACTTAGACT
** * *** * *
36470 TTACAAAAATCGGAAAGAGGAAAGCCTTTGTTGCGACACCAAAGCATCAATATCGTGTATCCTAA
131 TTACAACGATTGGTGGGAAGAAAGCCTTTGTTGCGAAACCAAAGCATCAATATCGTGTATCCTAA
** * *
36535 TGAGAAGACTACATTTATGGTGGCTAAT-CTAGAAAAGAATGGGGATTAGTTTGAGTATTAATGT
196 TGAGAAGACTATGTTTATGGTGCCTAATCCTA-AAAAGAATGGGGATTAGTTTGAGTATTCATGT
* *
36599 TTGGCTTATTTAAGAGACAAA-TGTTGATTCTATAAAAAACGAT-GCGAAGAAAAGCTTTTCTTG
260 TTGGCTTATTTAAGAGACAAACT-TTGATTCTATCAAAAACGGTAG-GAAGAAAAGCTTTTCTTG
36662 AG-CACCAAAGCATCAATGTCGGGTATCCTAACAAAGGCAATGTGTTTTGGCTTCCCAATCTTGA
323 AGACACCAAAGCATCAATGTCGGGTATCCTAACAAAGGCAATGTGTTTTGGCTTCCCAATCTTGA
* * * * * *
36726 AAAGAAAGCAGACTGTTACGAGAATCGATGCTTGTCTTATTCATGGGATGACCTTTGATTTTAAG
388 AAAGAATGGAGACTGTTAGGAGAATCGATGCTTGTCTTATTCAAGGGATGAACTTTCATTTTAAG
* ** *
36791 GATAATTTGGC-AAGGCAAAGATTT
453 GAAAATAGGGCGAA-GAAAAGATTT
* * * ***
36815 CCATGCAACAA-AAAATCATT-AATGTCATTTATCCTAATGC-GGAGAATCCATTTATAGTGCTT
1 CCAGGCAA-AAGAAAAAC-TTCAATGTCTTTTATCCTAAT-CAGGAGAATGTGTTTATAGTGCTT
* * * * * *
36877 TATCACAAAAAGAATGAAGATCTTTACTAGAGTCTATGTTTGTCTCATTTGTGGCACGAACTTAG
63 TATCAGAAAAAGAATGAAGATCATTACTAGAATCCATATTTGTCTCATTTGAGGCACGAACTTAG
* ** *** * * * *
36942 AATTTACAAAAATTGGAAAGAAGACAGCCTTTGCTACGAAACCAAATCATCAATATCGTGTATCC
128 ACTTTACAACGATTGGTGGGAAGAAAGCCTTTGTTGCGAAACCAAAGCATCAATATCGTGTATCC
* *
37007 TAATGAGAAGACTATGTTTATGGTGCCTAAAT-CTAAAAAGAATGAGGATTAGTTTGAGTATTAA
193 TAATGAGAAGACTATGTTTATGGTGCCT-AATCCTAAAAAGAATGGGGATTAGTTTGAGTATTCA
* *
37071 TGTTTGGCTTATTTAAGAGACAAACATTGATTCTATCAAAAACGAT-GCGAA-AAAAGCTTTTCT
257 TGTTTGGCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTAG-GAAGAAAAGCTTTTCT
* * *
37134 TGAGACACCGATGCATCAATGTCGGGTATCCTAACAAAGGCAATGTGTTTGGGCTTCCCAATCTT
321 TGAGACACCAAAGCATCAATGTCGGGTATCCTAACAAAGGCAATGTGTTTTGGCTTCCCAATCTT
* * * * * * *
37199 GAAAAGAACGGAGACTATTACGAGAATTGATGCTTGTCTTACTCAGGGGATGAACTTTGATTTTA
386 GAAAAGAATGGAGACTGTTAGGAGAATCGATGCTTGTCTTATTCAAGGGATGAACTTTCATTTTA
* *
37264 AGGATAATTA-GGCGAAGCAAAGATTT
451 AGGA-AAATAGGGCGAAGAAAAGATTT
* * * * * *
37290 CCATGCAAAAGAAAATCATCAATGTCATTTATCCTAAGGCA-GAGAATGCGTTTATAGTGCTTTA
1 CCAGGCAAAAGAAAAACTTCAATGTCTTTTATCCTAA-TCAGGAGAATGTGTTTATAGTGCTTTA
* * *
37354 TCACAAAAAGAATGAAGATCATTACTAGAATCTATGTTTGTCTCATTTGTA-GCACGAACTTAGA
65 TCAGAAAAAGAATGAAGATCATTACTAGAATCCATATTTGTCTCATTTG-AGGCACGAACTTAGA
* ** *** * **
37418 ATTTACAAAAATTGGAAAGAAGAAAACCTTTGTTGCGGCACCAAAGCATCAATATCGTGTATCCT
129 CTTTACAACGATTGGTGGGAAGAAAGCCTTTGTTGCGAAACCAAAGCATCAATATCGTGTATCCT
** * *
37483 AATGAGAAGACTACATTTATGGTGCCTAATCCAAAAAAGAATGGGGATTAGTGTGAGTATTCATG
194 AATGAGAAGACTATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTTTGAGTATTCATG
* * * *
37548 TTTGTCTTATTTAAGAGACAAACGTTGATTCTAACAAAAAC--AACGCGAAGAAAAGCTTTTCTT
259 TTTGGCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTA-G-GAAGAAAAGCTTTTCTT
* *
37611 GAGACA-CAAA-CTATCAATGTCGGGCATCCTAACAAAGGCAATGTGTTTTGGCATCCCAATCTT
322 GAGACACCAAAGC-ATCAATGTCGGGTATCCTAACAAAGGCAATGTGTTTTGGCTTCCCAATCTT
* * *
37674 GAAATGAAAGGAGACTGTTATGAGAATC
386 GAAAAGAATGGAGACTGTTAGGAGAATC
37702 CATTTATAGT
Statistics
Matches: 9238, Mismatches: 1063, Indels: 201
0.88 0.10 0.02
Matches are distributed among these distances:
470 1 0.00
471 245 0.03
472 20 0.00
473 341 0.04
474 97 0.01
475 2463 0.27
476 4258 0.46
477 1568 0.17
478 244 0.03
479 1 0.00
ACGTcount: A:0.35, C:0.15, G:0.20, T:0.30
Consensus pattern (476 bp):
CCAGGCAAAAGAAAAACTTCAATGTCTTTTATCCTAATCAGGAGAATGTGTTTATAGTGCTTTAT
CAGAAAAAGAATGAAGATCATTACTAGAATCCATATTTGTCTCATTTGAGGCACGAACTTAGACT
TTACAACGATTGGTGGGAAGAAAGCCTTTGTTGCGAAACCAAAGCATCAATATCGTGTATCCTAA
TGAGAAGACTATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTTTGAGTATTCATGTT
TGGCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTAGGAAGAAAAGCTTTTCTTGAGA
CACCAAAGCATCAATGTCGGGTATCCTAACAAAGGCAATGTGTTTTGGCTTCCCAATCTTGAAAA
GAATGGAGACTGTTAGGAGAATCGATGCTTGTCTTATTCAAGGGATGAACTTTCATTTTAAGGAA
AATAGGGCGAAGAAAAGATTT
Found at i:33950 original size:159 final size:159
Alignment explanation
Indices: 33787--34432 Score: 420
Period size: 159 Copynumber: 4.1 Consensus size: 159
33777 CAAAAACGAT
*
33787 GCGAAGAAAAGCTTTTCTTGAGACACCAAAGCATCAATATCGGGTATCATAACAAAGGCAATGTG
1 GCGAAGAAAAGCTTTTCTTGAGAAACCAAAGCATCAATATCGGGTATCATAACAAAGGCAATGTG
*
33852 TTTTGGCTTCCCAATCTTGAAAAGAATGGAAACCGTTAGGAGAATCGATGCTTGTCTTATTCAAG
66 TTTTGGCTTCCCAATCTTAAAAAGAATGGAAACCGTTAGGAGAATCGATGCTTGTCTTATTCAAG
* * *
33917 GGATGAACTTTCATTTTAAGAAAAATAGG
131 GGACGAACTTTGATTTTAACAAAAATAGG
* * ** * * * ** * ** *
33946 GCGAAGAAAAGATTTTCATGCA-AAAGAAAAACTTCAATGTCGTTTATCCTAA-TGAGGAGAATG
1 GCGAAGAAAAGCTTTTCTTG-AGAAACCAAAGCATCAATATCGGGTATCATAACAAAGG-CAATG
* ** * * ** * ** *
34009 TGTTTATAGTGCTT---TATCAAAAAAAGAAT-GAATGATCATTACTAGAATCCATATTTGTCTC
64 TGTTT-T-G-GCTTCCCAATCTTAAAAAGAATGGAA--ACCGTTAGGAGAATCGATGCTTGTCTT
** * * * * *
34070 ATTTGAGGCACGAACTTAGACTTT-ACAACAATTGG
124 ATTCAAGGGACGAACTTTGATTTTAACAAAAATAGG
* * * * * * * * *
34105 TGGGAAGAAAGGC-TTTGTTGCGAAACCAGAGCATCAATATCGTGTATCCTAATGAGAAGTCAAT
1 -GCGAAGAAAAGCTTTTCTTGAGAAACCAAAGCATCAATATCGGGTATCATAA-CA-AAGGCAAT
* * * * *** * * *
34169 GT-TTATGG-TGCCTAATCTTAAAAAGAATAGGGATTAGTGT-GG-GTATTC-ATGTTTGTTTTA
63 GTGTTTTGGCTTCCCAATCTTAAAAAGAAT-GGAAACCGT-TAGGAG-AATCGATGCTTGTCTTA
* ** * * * * ** *
34229 TTTAAAAGACAAACATTGATTCTATCAAAACGA-T
125 TTCAAGGGACGAACTTTGATTTTAACAAAAATAGG
*
34263 GCGAAGAAAAGCTTTTCTTGAGACACCAAAGCATCAATATCGGGTATCATAACAAAGGCAATGTG
1 GCGAAGAAAAGCTTTTCTTGAGAAACCAAAGCATCAATATCGGGTATCATAACAAAGGCAATGTG
*
34328 TTTTGGCTTCCCAATCTTGAAAAGAATGGAAACCGTTAGGAGAATCGATGCTTGTCTTATTCAAG
66 TTTTGGCTTCCCAATCTTAAAAAGAATGGAAACCGTTAGGAGAATCGATGCTTGTCTTATTCAAG
* * * **
34393 GGATGAAATTTTATTTTAAGGAAAATAGG
131 GGACGAACTTTGATTTTAACAAAAATAGG
*
34422 GAGAAGAAAAG
1 GCGAAGAAAAG
34433 ATTTCCAGGA
Statistics
Matches: 340, Mismatches: 120, Indels: 54
0.66 0.23 0.11
Matches are distributed among these distances:
156 11 0.03
157 27 0.08
158 111 0.33
159 127 0.37
160 50 0.15
161 8 0.02
162 6 0.02
ACGTcount: A:0.36, C:0.14, G:0.21, T:0.29
Consensus pattern (159 bp):
GCGAAGAAAAGCTTTTCTTGAGAAACCAAAGCATCAATATCGGGTATCATAACAAAGGCAATGTG
TTTTGGCTTCCCAATCTTAAAAAGAATGGAAACCGTTAGGAGAATCGATGCTTGTCTTATTCAAG
GGACGAACTTTGATTTTAACAAAAATAGG
Found at i:38033 original size:363 final size:364
Alignment explanation
Indices: 37331--38056 Score: 1037
Period size: 363 Copynumber: 2.0 Consensus size: 364
37321 TCCTAAGGCA
* * * * *
37331 GAGAATGCGTTTATAGTGCTTTATCACAAAAAGAATGAAGATCATTACTAGAATCTATGTTTGTC
1 GAGAATCCATTTATAGTGCCTTATCACAAAAAGAATGAAGATCATTACTAGAAGCTATATTTGTC
* * **
37396 TCATTTGTAGCACGAACTTAGAATTTACAAAAATTGGAAAGAAGAAAACCTTTGTTGCGGCACCA
66 TCATTTGTAGCACAAACTTAGAATTTACAAAAATTGGAAAGAAGAAAACCCTTGTTGCGAAACCA
* *
37461 AAGCATCAATATCGTGTATCCTAATGAGAAGACTACATTTATGGTGCCTAATCCAAAAAAGAATG
131 AAGCATCAATATCGTGTATCCTAATAAGAAGACTACATTTATGGTGCCTAATCCAAAAAAAAATG
** * ** * *
37526 GGGATTAGTGTGAGTATTCATGTTTGTCTTATTTAAGAGACAAACGTTGATTCTAACAAAAACAA
196 GGGATTAGTAAGAGTATTCATATTTGTCTTACGTAAGAGACAAACGTTGACTCCAACAAAAACAA
37591 CGCGAAGAAAAGCTTTTCTTGAGACACAAACTATCAATGTCGGGCATCCTAACAAAGGCAATGTG
261 CGCGAAGAAAAGCTTTTCTTGAGACACAAACTATCAATGTCGGGCATCCTAACAAAGGCAATGTG
*
37656 TTTTGGCATCCCAATCTTGAAATGAAAGGAGACTGTTAT
326 TTTTGGCATCCCAATCTTGAAAAGAAAGGAGACTGTTAT
37695 GAGAATCCATTTATAGTGCCTTATCACAAAAA-AATGAAGATCATTACTAGAAGCTATATTTGTC
1 GAGAATCCATTTATAGTGCCTTATCACAAAAAGAATGAAGATCATTACTAGAAGCTATATTTGTC
* * *
37759 TCATTTGTGGCACAAACTTAGAATTTACAAAAATTGGAAAGAAGACAGCCCTTGTT-CGAAACCA
66 TCATTTGTAGCACAAACTTAGAATTTACAAAAATTGGAAAGAAGAAAACCCTTGTTGCGAAACCA
**
37823 AAGCATCAATATCGTGTATCCTAATAAGAAGACTATGTTTATGGTGCCTAAT-CAAGAAAAAAAT
131 AAGCATCAATATCGTGTATCCTAATAAGAAGACTACATTTATGGTGCCTAATCCAA-AAAAAAAT
* * * * * **
37887 GGGGATTAGTAAGAGTATTCATATTTGTCTTACGTGAGAGACTATCTTTGACTCCATCAAAAATG
195 GGGGATTAGTAAGAGTATTCATATTTGTCTTACGTAAGAGACAAACGTTGACTCCAACAAAAACA
* * * * * *
37952 GCGCGAATAAAAGCTTTTCTTGAGACACCAAAGC-ATCAATGTTGTGTATCCTAACGAAGGCAAT
260 ACGCGAAGAAAAGCTTTTCTTGAGACA-CAAA-CTATCAATGTCGGGCATCCTAACAAAGGCAAT
* * *
38016 GTGTTTTGGCTTCCCAATCTTGAAAAGAATGGAGATTGTTA
323 GTGTTTTGGCATCCCAATCTTGAAAAGAAAGGAGACTGTTA
38057 GGATAATCGA
Statistics
Matches: 319, Mismatches: 40, Indels: 7
0.87 0.11 0.02
Matches are distributed among these distances:
361 3 0.01
362 138 0.43
363 148 0.46
364 30 0.09
ACGTcount: A:0.36, C:0.16, G:0.19, T:0.29
Consensus pattern (364 bp):
GAGAATCCATTTATAGTGCCTTATCACAAAAAGAATGAAGATCATTACTAGAAGCTATATTTGTC
TCATTTGTAGCACAAACTTAGAATTTACAAAAATTGGAAAGAAGAAAACCCTTGTTGCGAAACCA
AAGCATCAATATCGTGTATCCTAATAAGAAGACTACATTTATGGTGCCTAATCCAAAAAAAAATG
GGGATTAGTAAGAGTATTCATATTTGTCTTACGTAAGAGACAAACGTTGACTCCAACAAAAACAA
CGCGAAGAAAAGCTTTTCTTGAGACACAAACTATCAATGTCGGGCATCCTAACAAAGGCAATGTG
TTTTGGCATCCCAATCTTGAAAAGAAAGGAGACTGTTAT
Found at i:38708 original size:476 final size:477
Alignment explanation
Indices: 37704--40795 Score: 4145
Period size: 476 Copynumber: 6.5 Consensus size: 477
37694 TGAGAATCCA
* * * * * *
37704 TTTATAGTGCCTTATCACAAAAA-AATGAAGATCATTACTAGAAGCTATATTTGTCTCATTTGTG
1 TTTATAGTGCTTTATCAAAAAAAGAATGGAGATCATTACTAGAATCCATATTTGTCTCATTTGAG
* * *** *** * *
37768 GCACAAACTTAGAATTTACAAAAATTGGAAAGAAGACAGCCCTTGTT-CGAAACCAAAGCATCAA
66 GCACGAACTTAGACTTTACAATGGTTGGTGGGAAGAAAGCCTTTGTTGCGAAACCAAAGCATCAA
* * **
37832 TATCGTGTATCCTAATAAGAAGACTATGTTTATGGTGCCTAAT-CAAGAAAAAAATGGGGATTAG
131 TATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTA-AAAGGAATGGGGATTAG
* * * ** * * * * * *
37896 TAAGAGTATTCATATTTGTCTTACGTGAGAGACTATC-TTTGACTCCATCAAAAATGGC-GCGAA
195 TATGAGTATTCATGTTTGGCTTATTTAAGAGACAAACGTTTGATTCTATCAAAAACGGCAG-GAA
* **
37959 TAAAAGCTTTTCTTGAGACACCAAAGCATCAATGTTGTGTATCCTAACGAAGGCAATGTGTTTTG
259 GAAAAGCTTTTCTTGAGACACCAAAGCATCAATGTCATGTATCCTAACGAAGGCAATGTGTTTTG
* * *
38024 GCTTCCCAATCTTGAAAAGAATGGAGATTGTTAGGATAATCGATGCTTATCTTATACAAGGGATG
324 GCTTCCCAATCTTGAAAAGAATGGAGACTGTTAGGAGAATCGATGCTTATCTTATTCAAGGGATG
* *
38089 AACTTT-AGTTTTAAGAAAAATAGGGCGAAGAAAAGATTTCCAAGAAAAAGAAAAACTTTAATGT
389 AACTTTCA-TTTTAAGAAAAATAGGGCGAAGAAAAGATTTCCAGGAAAAAGAAAAACTTCAATGT
*
38153 CTTTTGTCCTAATCATGAGAATGTG
453 CTTTTGTCCTAATCAGGAGAATGTG
*
38178 TTTATAGTGCTTTATCAAAAAAAGAATGGAGATCATTGCTAGAATCCATATTTGTCTCATTTGAG
1 TTTATAGTGCTTTATCAAAAAAAGAATGGAGATCATTACTAGAATCCATATTTGTCTCATTTGAG
* *
38243 GCACGAACTTAGACTTTACCATGGTTGGTGGGAAGAAAGCCTTTGTTGTGAAACCAAAGCATCAA
66 GCACGAACTTAGACTTTACAATGGTTGGTGGGAAGAAAGCCTTTGTTGCGAAACCAAAGCATCAA
**
38308 TA-CTGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTAAAAGGAATGATGATTAG
131 TATC-GTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTAAAAGGAATGGGGATTAG
* * * *
38372 TACGAGTATTCATGTTTGGCTTATTTAAGAGACAAACGCTT-ATTCTATCAAAAACAGCAAGAAG
195 TATGAGTATTCATGTTTGGCTTATTTAAGAGACAAACGTTTGATTCTATCAAAAACGGCAGGAAG
* * * * *
38436 AAAAGCTTTTCTTGAGATACCAAAGCATAAATGTCATGCATCCCAACGACGGCAATGTGTTTTGG
260 AAAAGCTTTTCTTGAGACACCAAAGCATCAATGTCATGTATCCTAACGAAGGCAATGTGTTTTGG
*
38501 CTTCCCAATCTTGAAAAGAATTGAGACTGTTAGGAGAATCGATGCTTATCTTATTCAAGGGATGA
325 CTTCCCAATCTTGAAAAGAATGGAGACTGTTAGGAGAATCGATGCTTATCTTATTCAAGGGATGA
* * * *
38566 ACTTTCATTTTATGGAAAATAGGGCGAAGAAACGATTTCCAGGAAAAAGAAAAACTTCATTGTCT
390 ACTTTCATTTTAAGAAAAATAGGGCGAAGAAAAGATTTCCAGGAAAAAGAAAAACTTCAATGTCT
38631 TTTGTCCTAATCAGGAGAATGTG
455 TTTGTCCTAATCAGGAGAATGTG
*
38654 TTTATAGTGCTTTATCAAAAAAAGAATGGAGATAATTACTAGAATCCATATTTGTCTCATTTGAG
1 TTTATAGTGCTTTATCAAAAAAAGAATGGAGATCATTACTAGAATCCATATTTGTCTCATTTGAG
** * * *
38719 GCACGAACTTAGACTTTTA-AACCGTTGGTGGGAAGAAAACCTTTATTGCGAAACCAAATCATCA
66 GCACGAACTTAGAC-TTTACAATGGTTGGTGGGAAGAAAGCCTTTGTTGCGAAACCAAAGCATCA
* *
38783 ATATCGTGTATCCTAAAGAGAAGACTATGTTTATTGTGCCTAATCCTGAAAA-GAATGGGGATTA
130 ATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCT-AAAAGGAATGGGGATTA
* * * *
38847 GTGTGAGTATTCATGTTTGTCTTATTTAAGAGACAAA-TTTTGATTCTATCAAAAACGAC-GAGA
194 GTATGAGTATTCATGTTTGGCTTATTTAAGAGACAAACGTTTGATTCTATCAAAAACGGCAG-GA
**
38910 AGAAAAGCTTTTCTTGAGACACCAAAGCATCAATGTTGTGTATCCTAACGAAGGCAATGTGTTTT
258 AGAAAAGCTTTTCTTGAGACACCAAAGCATCAATGTCATGTATCCTAACGAAGGCAATGTGTTTT
* *
38975 GGCTTCCCAATCTTGAAAAGAATGGAGACTGTTAGGATAATCGATGCTTGTCTTATTCAAGGGAT
323 GGCTTCCCAATCTTGAAAAGAATGGAGACTGTTAGGAGAATCGATGCTTATCTTATTCAAGGGAT
* *
39040 GAACTTTCATTTTAAGAAAAATAGGGCGAAGAAAAGATTTCCAAGAAAAAGAAAAACTTTAATGT
388 GAACTTTCATTTTAAGAAAAATAGGGCGAAGAAAAGATTTCCAGGAAAAAGAAAAACTTCAATGT
*
39105 CTTTTGTCCTAATCATGAGAATGTG
453 CTTTTGTCCTAATCAGGAGAATGTG
* *
39130 TTTATAGTGCTTTATCAAGAAAAGAATGGAGATCATTGCTAGAATCCATATTTGTCTCATTTGAG
1 TTTATAGTGCTTTATCAAAAAAAGAATGGAGATCATTACTAGAATCCATATTTGTCTCATTTGAG
*
39195 GCACGAACTTAGACTTTATC-ATGGTTGGTGGGAAGAAAGCCTTTGTTGTGAAACCAAAGCATCA
66 GCACGAACTTAGACTTTA-CAATGGTTGGTGGGAAGAAAGCCTTTGTTGCGAAACCAAAGCATCA
**
39259 ATA-CTGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTAAAAGGAATGATGATTA
130 ATATC-GTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTAAAAGGAATGGGGATTA
*
39323 GTACGAGTATTCATGTTTGGCTTATTTAAGAGACAAACGTTT-ATTCTATCAAAAACGGCAGGAA
194 GTATGAGTATTCATGTTTGGCTTATTTAAGAGACAAACGTTTGATTCTATCAAAAACGGCAGGAA
* * * * *
39387 GAAAAGCTTTTCTTGAGATACCAAAGCATAAATGTCATGCATCCCAACGACGGCAATGTGTTTTG
259 GAAAAGCTTTTCTTGAGACACCAAAGCATCAATGTCATGTATCCTAACGAAGGCAATGTGTTTTG
* *
39452 GCTTCCCAATCTTGAAAAGAATTGAGACTGTTAGGAGAATCGATGCTTATCTTATTGAAGGGATG
324 GCTTCCCAATCTTGAAAAGAATGGAGACTGTTAGGAGAATCGATGCTTATCTTATTCAAGGGATG
* * * * * *
39517 AATTTTCATTTTATGGAAAATAGGGCGAAGAAACGATTTTCAGGAAAAAGAAAAACTTCATTGTC
389 AACTTTCATTTTAAGAAAAATAGGGCGAAGAAAAGATTTCCAGGAAAAAGAAAAACTTCAATGTC
39582 TTTTGTCCTAATCAGGAGAATGTG
454 TTTTGTCCTAATCAGGAGAATGTG
* * * * *
39606 TTTATGGTGCTTTATCAAAAAAAGAATGGAGATAACTA-TGAGTATTCATATTTGTCTCATTTGA
1 TTTATAGTGCTTTATCAAAAAAAGAATGGAGATCATTACT-AGAATCCATATTTGTCTCATTTGA
* * * *
39670 GGCACGAACTTAGACTTTTCAATCGTTGGTGGGAAGAAAACCTTTATTGCGAAACCAAAGCATCA
65 GGCACGAACTTAGACTTTACAATGGTTGGTGGGAAGAAAGCCTTTGTTGCGAAACCAAAGCATCA
* *
39735 ATATCGTGTATCCTAAAGAGAAGACTATGTTTATGGTGCCTAATCCTAAAAGGAATGGGGTTTAG
130 ATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTAAAAGGAATGGGGATTAG
39800 TATGAGTATTCATGTTTGGCTTATTTAAGAGACAAACG-TTGATTCTATCAAAAACGGCAGGAAG
195 TATGAGTATTCATGTTTGGCTTATTTAAGAGACAAACGTTTGATTCTATCAAAAACGGCAGGAAG
** *
39864 AAAAGCTTTTCTTGAGACACCAAAGCATCAATGTCGGGTATCCTAACAAAGGCAATGTGTTTTGG
260 AAAAGCTTTTCTTGAGACACCAAAGCATCAATGTCATGTATCCTAACGAAGGCAATGTGTTTTGG
* *
39929 CTTCCCAATCTTGAAAAGTATGGAGACTGTTAGGAGAATCGATGCTTCTCTTATTCAAGGGATGA
325 CTTCCCAATCTTGAAAAGAATGGAGACTGTTAGGAGAATCGATGCTTATCTTATTCAAGGGATGA
* * * *
39994 ACTTTCATTTTAAGAAAAATATGGCGAAGAAAAGATTTCTATGCAAAAGAAAAACTTCAATGTCT
390 ACTTTCATTTTAAGAAAAATAGGGCGAAGAAAAGATTTCCAGGAAAAAGAAAAACTTCAATGTCT
* *
40059 TTTATCCTAATGAGGAGAATGTG
455 TTTGTCCTAATCAGGAGAATGTG
* * * *
40082 TTTATAGTGCTTTATCAAAAAAAGAATGAAGATCATTACTAGATTACATACTTGTCTCATTTGAG
1 TTTATAGTGCTTTATCAAAAAAAGAATGGAGATCATTACTAGAATCCATATTTGTCTCATTTGAG
* **
40147 GCACGAACTTAGACTTTACAATGATTGGACGGAAGAAAGCCTTTGTTGCGAAACCAAAGCATCAA
66 GCACGAACTTAGACTTTACAATGGTTGGTGGGAAGAAAGCCTTTGTTGCGAAACCAAAGCATCAA
* * *
40212 TATCATGTATCCTGATGAGAAGACTATGTTTATGGTGCCTAATCCTAAAAGGAATGAGGATTAGT
131 TATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTAAAAGGAATGGGGATTAGT
* * * * ** *
40277 TTGAGTATTAATGTTCGGCTTATTCAAGAGACAAACG-TTGATTCTATCAAAAACAACGGGAAGA
196 ATGAGTATTCATGTTTGGCTTATTTAAGAGACAAACGTTTGATTCTATCAAAAACGGCAGGAAGA
* *
40341 AAAGCTTTTCTTGAGACACCTAAGCATCGATGTCGA-GTATCCTAAC-AAGGGCAATGTGTTTTG
261 AAAGCTTTTCTTGAGACACCAAAGCATCAATGTC-ATGTATCCTAACGAA-GGCAATGTGTTTTG
* * * * * *
40404 GCATCCCAATCTTGAAAAGAAAGGAGACTGTT-GCGAGAATCGTTGCTTGTCTTATTTAGGGGAT
324 GCTTCCCAATCTTGAAAAGAATGGAGACTGTTAG-GAGAATCGATGCTTATCTTATTCAAGGGAT
* * * * ** * * ** * * *
40468 GAACATTGATTTTAAGGAGAATTTGGCAAAGCAAAGATTTCCATGCCAAAA-AAAATCATCGATG
388 GAACTTTCATTTTAAGAAAAATAGGGCGAAGAAAAGATTTCCA-GGAAAAAGAAAAACTTCAATG
* * * *
40532 TCATTTATCCTAATGTA-GAGAATGCG
452 TCTTTTGTCCTAAT-CAGGAGAATGTG
* * * * * * * * *
40558 TTTATAGTGCTTTACCACAAGAACAATGAAGATCATTACCAGAATCTATGTTTGTCTCATTTGAA
1 TTTATAGTGCTTTATCAAAAAAAGAATGGAGATCATTACTAGAATCCATATTTGTCTCATTTGAG
* * *** *** *
40623 GCACGAACATAGAATTTACAAAAATTGGAAAGAACAAAGCCTTTGTTGC-AACACCAAAGCATCA
66 GCACGAACTTAGACTTTACAATGGTTGGTGGGAAGAAAGCCTTTGTTGCGAA-ACCAAAGCATCA
* * ** *
40687 ATACCGTGTATCCTCATGAGAAGACTACATTTATGGTGCCTAAT-CTAGAAAAGAATGGGGATTA
130 ATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTA-AAAGGAATGGGGATTA
* * *
40751 GTTTGAGTATTAATGTTTGGC---TTTAAGAGACAAATG-TTGATTCTA
194 GTATGAGTATTCATGTTTGGCTTATTTAAGAGACAAACGTTTGATTCTA
40796 ATGAAGATTT
Statistics
Matches: 2332, Mismatches: 256, Indels: 61
0.88 0.10 0.02
Matches are distributed among these distances:
473 22 0.01
474 21 0.01
475 96 0.04
476 2167 0.93
477 26 0.01
ACGTcount: A:0.35, C:0.15, G:0.20, T:0.30
Consensus pattern (477 bp):
TTTATAGTGCTTTATCAAAAAAAGAATGGAGATCATTACTAGAATCCATATTTGTCTCATTTGAG
GCACGAACTTAGACTTTACAATGGTTGGTGGGAAGAAAGCCTTTGTTGCGAAACCAAAGCATCAA
TATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTAAAAGGAATGGGGATTAGT
ATGAGTATTCATGTTTGGCTTATTTAAGAGACAAACGTTTGATTCTATCAAAAACGGCAGGAAGA
AAAGCTTTTCTTGAGACACCAAAGCATCAATGTCATGTATCCTAACGAAGGCAATGTGTTTTGGC
TTCCCAATCTTGAAAAGAATGGAGACTGTTAGGAGAATCGATGCTTATCTTATTCAAGGGATGAA
CTTTCATTTTAAGAAAAATAGGGCGAAGAAAAGATTTCCAGGAAAAAGAAAAACTTCAATGTCTT
TTGTCCTAATCAGGAGAATGTG
Found at i:39071 original size:159 final size:160
Alignment explanation
Indices: 37944--40027 Score: 499
Period size: 159 Copynumber: 13.1 Consensus size: 160
37934 TTGACTCCAT
* *
37944 CAAAAAT-GGCGCGAATAAAAGCTTTTCTTGAGACACCAAAGCATCAATGTTGTGTATCCTAA-C
1 CAAAAATAGG-GCGAAGAAAAGCTTTTCTTGAGAAACCAAAGCATCAATGTTGTGTATCCTAATC
* *
38007 GAAGGCAATGTGTTTTGGCTTCCCAATCTTGAAAAGAATGGAGATTGTTAGGATAATCGATGCTT
65 GAAGGCAATGTGTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTGTTAGGATAATCGATGTTT
* ** *
38072 ATCTTATACAAGGGATGAACTTT-AGTTTTAA
130 GTCTTATTTAAGGGACGAACTTTGA-TTTTAA
* * * ** * ** * * * * *
38103 GAAAAATAGGGCGAAGAAAAGATTTCCAAGAAAAAGAAAAACTTTAATGTCT-TTTGTCCTAATC
1 CAAAAATAGGGCGAAGAAAAGCTTTTCTTGAGAAACCAAAGCATCAATGT-TGTGTATCCTAATC
* * *** *
38167 -ATGAG-AATGTGTTTATAGTGCTT---TATCAAAAAAAGAATGGAGATCATTGCTA-G--AATC
65 GAAG-GCAATGTGTTT-T-G-GCTTCCCAATCTTGAAAAGAATGGAGA-C--TGTTAGGATAATC
* * * * * * *
38224 CATATTTGTCTCATTTGAGGCACGAACTTAGACTTT-A
123 GATGTTTGTCTTATTTAAGGGACGAACTTTGATTTTAA
* *** * * * * * **
38261 CCATGGTTGGTGGGAAG-AAAGCCTTTGTTGTGAAACCAAAGCATCAATACTGTGTATCCTAATG
1 CAAAAATAGG-GCGAAGAAAAGCTTTTCTTGAGAAACCAAAGCATCAATGTTGTGTATCCTAAT-
* * * * * * * * * *
38325 AGAAGACTATGT-TTATGG-TGCCTAATCCT-AAAAGGAAT-GATGATTAG-TACGAGTATTC-A
64 CGAAGGCAATGTGTTTTGGCTTCCCAATCTTGAAAA-GAATGGA-GACT-GTTAGGA-TAATCGA
* * * * * *
38384 TGTTTGGCTTATTTAAGAGACAAACGCTT-ATTCTAT
125 TGTTTGTCTTATTTAAGGGACGAAC-TTTGATTTTAA
* *** * * ** * *
38420 CAAAAACAGCAAGAAGAAAAGCTTTTCTTGAGATACCAAAGCATAAATGTCATGCATCCCAA-CG
1 CAAAAATAGGGCGAAGAAAAGCTTTTCTTGAGAAACCAAAGCATCAATGTTGTGTATCCTAATCG
* * * * *
38484 ACGGCAATGTGTTTTGGCTTCCCAATCTTGAAAAGAATTGAGACTGTTAGGAGAATCGATGCTTA
66 AAGGCAATGTGTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTGTTAGGATAATCGATGTTTG
* * * *
38549 TCTTATTCAAGGGATGAACTTTCATTTTAT
131 TCTTATTTAAGGGACGAACTTTGATTTTAA
** * * * ** * ** * * * * *
38579 GGAAAATAGGGCGAAGAAACGATTTCCAGGAAAAAGAAAAACTTCATTGTCT-TTTGTCCTAATC
1 CAAAAATAGGGCGAAGAAAAGCTTTTCTTGAGAAACCAAAGCATCAATGT-TGTGTATCCTAATC
* * *** * ** * *
38643 --AGGAGAATGTGTTTATAGTGCTT---TATCAAAAAAAGAATGGAGA-TAATTACTAGAATCCA
65 GAAGG-CAATGTGTTT-T-G-GCTTCCCAATCTTGAAAAGAATGGAGACT-GTTAGGATAATCGA
* * * * *
38702 TATTTGTCTCATTTGAGGCACGAACTTAGACTTTT-A
125 TGTTTGTCTTATTTAAGGGACGAACTTTGA-TTTTAA
*** * * * * * * * * *
38738 -AACCGTTGGTGGGAAGAAAA-CCTTTATTGCGAAACCAAATCATCAATATCGTGTATCCTAAAG
1 CAAAAATAGG-GCGAAGAAAAGCTTTTCTTGAGAAACCAAAGCATCAATGTTGTGTATCCT-AAT
* * * * * * * * *
38801 AGAAGACTATGT-TTATT-G-TGCCTAATCCTGAAAAGAATGGGGATTAG-T-GTGAGTATTC-A
64 CGAAGGCAATGTGTT-TTGGCTTCCCAATCTTGAAAAGAATGGAGACT-GTTAG-GA-TAATCGA
* * * * *
38860 TGTTTGTCTTATTTAAGAGACAAATTTTGATTCTAT
125 TGTTTGTCTTATTTAAGGGACGAACTTTGATTTTAA
* * * *
38896 CAAAAA-CGACGAGAAGAAAAGCTTTTCTTGAGACACCAAAGCATCAATGTTGTGTATCCTAA-C
1 CAAAAATAG-GGCGAAGAAAAGCTTTTCTTGAGAAACCAAAGCATCAATGTTGTGTATCCTAATC
*
38959 GAAGGCAATGTGTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTGTTAGGATAATCGATGCTT
65 GAAGGCAATGTGTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTGTTAGGATAATCGATGTTT
* * *
39024 GTCTTATTCAAGGGATGAACTTTCATTTTAA
130 GTCTTATTTAAGGGACGAACTTTGATTTTAA
* * * ** * ** * * * * *
39055 GAAAAATAGGGCGAAGAAAAGATTTCCAAGAAAAAGAAAAACTTTAATGTCT-TTTGTCCTAATC
1 CAAAAATAGGGCGAAGAAAAGCTTTTCTTGAGAAACCAAAGCATCAATGT-TGTGTATCCTAATC
* * ** *
39119 -ATGAG-AATGTGTTTATAGTGCTT---TATCAAGAAAAGAATGGAGATCATTGCTA-G--AATC
65 GAAG-GCAATGTGTTT-T-G-GCTTCCCAATCTTGAAAAGAATGGAGA-C--TGTTAGGATAATC
* * * * * * * *
39176 CATATTTGTCTCATTTGAGGCACGAACTTAGACTTTAT
123 GATGTTTGTCTTATTTAAGGGACGAACTTTGATTTTAA
*** * * * * * **
39214 C-ATGGTTGGTGGGAAG-AAAGCCTTTGTTGTGAAACCAAAGCATCAATACTGTGTATCCTAATG
1 CAAAAATAGG-GCGAAGAAAAGCTTTTCTTGAGAAACCAAAGCATCAATGTTGTGTATCCTAAT-
* * * * * * * * * *
39277 AGAAGACTATGT-TTATGG-TGCCTAATCCT-AAAAGGAAT-GATGATTAG-TACGAGTATTC-A
64 CGAAGGCAATGTGTTTTGGCTTCCCAATCTTGAAAA-GAATGGA-GACT-GTTAGGA-TAATCGA
* * * * *
39336 TGTTTGGCTTATTTAAGAGACAAACGTTT-ATTCTAT
125 TGTTTGTCTTATTTAAGGGACGAAC-TTTGATTTTAA
* * * ** * *
39372 C-AAAA-ACGGCAGGAAGAAAAGCTTTTCTTGAGATACCAAAGCATAAATGTCATGCATCCCAA-
1 CAAAAATAGGGC--GAAGAAAAGCTTTTCTTGAGAAACCAAAGCATCAATGTTGTGTATCCTAAT
* * * *
39434 CGACGGCAATGTGTTTTGGCTTCCCAATCTTGAAAAGAATTGAGACTGTTAGGAGAATCGATGCT
64 CGAAGGCAATGTGTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTGTTAGGATAATCGATGTT
* * * * * *
39499 TATCTTATTGAAGGGATGAATTTTCATTTTAT
129 TGTCTTATTTAAGGGACGAACTTTGATTTTAA
** * * ** * ** * * * * *
39531 GGAAAATAGGGCGAAGAAACGATTTTCAGGAAAAAGAAAAACTTCATTGTCT-TTTGTCCTAATC
1 CAAAAATAGGGCGAAGAAAAGCTTTTCTTGAGAAACCAAAGCATCAATGT-TGTGTATCCTAATC
* * *** *** ** * *
39595 --AGGAGAATGTGTTTATGG-TGCTTTATCAAAAAAAGAATGGAGA-TAACTATGAGTATTC-AT
65 GAAGG-CAATGTGTTT-TGGCTTCCCAATCTTGAAAAGAATGGAGACT-GTTAGGA-TAATCGAT
* * * * *
39655 ATTTGTCTCATTTGAGGCACGAACTTAGACTTTT--
126 GTTTGTCTTATTTAAGGGACGAACTTTGA-TTTTAA
*** * * * * * * * *
39689 CAATCGTTGGTGGGAAGAAAA-CCTTTATTGCGAAACCAAAGCATCAATATCGTGTATCCTAAAG
1 CAAAAATAGG-GCGAAGAAAAGCTTTTCTTGAGAAACCAAAGCATCAATGTTGTGTATCCT-AAT
* * * * * * * * ** * *
39753 AGAAGACTATGT-TTATGG-TGCCTAATCCT-AAAAGGAATGGGGTTTAG-TATGAGTATTC-AT
64 CGAAGGCAATGTGTTTTGGCTTCCCAATCTTGAAAA-GAATGGAGACT-GTTAGGA-TAATCGAT
* * * * * *
39813 GTTTGGCTTATTTAAGAGACAAACGTTGATTCTAT
126 GTTTGTCTTATTTAAGGGACGAACTTTGATTTTAA
* * * *
39848 C-AAAA-ACGGCAGGAAGAAAAGCTTTTCTTGAGACACCAAAGCATCAATGTCGGGTATCCTAA-
1 CAAAAATAGGGC--GAAGAAAAGCTTTTCTTGAGAAACCAAAGCATCAATGTTGTGTATCCTAAT
* * * *
39910 CAAAGGCAATGTGTTTTGGCTTCCCAATCTTGAAAAGTATGGAGACTGTTAGGAGAATCGATGCT
64 CGAAGGCAATGTGTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTGTTAGGATAATCGATGTT
* * * *
39975 TCTCTTATTCAAGGGATGAACTTTCATTTTAA
129 TGTCTTATTTAAGGGACGAACTTTGATTTTAA
* *
40007 GAAAAATATGGCGAAGAAAAG
1 CAAAAATAGGGCGAAGAAAAG
40028 ATTTCTATGC
Statistics
Matches: 1298, Mismatches: 497, Indels: 260
0.63 0.24 0.13
Matches are distributed among these distances:
155 9 0.01
156 9 0.01
157 63 0.05
158 349 0.27
159 755 0.58
160 76 0.06
161 17 0.01
162 20 0.02
ACGTcount: A:0.34, C:0.14, G:0.21, T:0.31
Consensus pattern (160 bp):
CAAAAATAGGGCGAAGAAAAGCTTTTCTTGAGAAACCAAAGCATCAATGTTGTGTATCCTAATCG
AAGGCAATGTGTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTGTTAGGATAATCGATGTTTG
TCTTATTTAAGGGACGAACTTTGATTTTAA
Found at i:40825 original size:13 final size:13
Alignment explanation
Indices: 40807--40832 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
40797 TGAAGATTTG
40807 GAATTTACAAAAA
1 GAATTTACAAAAA
40820 GAATTTACAAAAA
1 GAATTTACAAAAA
40833 AAATGAACTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.62, C:0.08, G:0.08, T:0.23
Consensus pattern (13 bp):
GAATTTACAAAAA
Found at i:40964 original size:321 final size:322
Alignment explanation
Indices: 40537--41119 Score: 866
Period size: 321 Copynumber: 1.8 Consensus size: 322
40527 CGATGTCATT
* * * * * * *
40537 TATCCTAATGTAGAGAATGCGTTTATAGTGCTTTACCACAAGAACAATGAAGATCATTACCAGAA
1 TATCCTAATGCAGAGAATCCATTTATAGTGCCTAACCACAAAAACAATAAAGATCATTACCAGAA
*
40602 TCTATGTTTGTCTCATTTGAAGCACGAACATAGAATTTACAAAAATTGGAAAGAACAAAGCCTTT
66 TCTATGTTTGTCTCAATTGAAGCACGAACATAGAATTTACAAAAATTGGAAAGAACAAAGCCTTT
*
40667 GTTGC-AACACCAAAGCATCAATACCGTGTATCCTCATGAGAAGACTACATTTATGGTGCCT-AA
131 GTTGCGAA-ACCAAAGCATCAATACCGTGTATCCTAATGAGAAGACTACATTTATGGTGCCTAAA
* **
40730 TCTAGAAAAGAATGGGGATTAGTTTGAGTATTAATGTTTGGC-TTTAAGAGACAAATGTTGATTC
195 TCTA-AAAAGAATGAGGATTAGTTTGAGTATTAATGTTTGGCTTTTAAGAGACAAACATTGATTC
40794 TAATGAAGATTTGGAATTTACAAAAAGAATTTACAAAAAAAATGAACTTATCGTCAATATCGTG
259 TAATGAAGATTTGGAATTTACAAAAAGAATTTACAAAAAAAATGAACTTATCGTCAATATCGTG
* * * * *
40858 TATCCTAATGCGGAGAATCCATTTATAGTGCCTAATCACAAAAAGAATAAAGATTATTACTAGAA
1 TATCCTAATGCAGAGAATCCATTTATAGTGCCTAACCACAAAAACAATAAAGATCATTACCAGAA
** * * *
40923 TCTATGTTTGTCTCAATTGTGGCACGAACTTAGAATTTACAAAAATTGGAAAGAAGACAGCCTTT
66 TCTATGTTTGTCTCAATTGAAGCACGAACATAGAATTTACAAAAATTGGAAAGAACAAAGCCTTT
* * **
40988 GTTGCGAAACCAAATCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAAAT
131 GTTGCGAAACCAAAGCATCAATACCGTGTATCCTAATGAGAAGACTACATTTATGGTGCCTAAAT
*
41053 CTAAAAAGAATGAGGATTAGTTTGGGTATTAATGTTTGGCTTATTTAAGAGACAAACATTGATTC
196 CTAAAAAGAATGAGGATTAGTTTGAGTATTAATGTTTGGC-T-TTTAAGAGACAAACATTGATTC
41118 TA
259 TA
41120 TCAAAAACGA
Statistics
Matches: 230, Mismatches: 27, Indels: 7
0.87 0.10 0.03
Matches are distributed among these distances:
321 200 0.87
322 8 0.03
324 22 0.10
ACGTcount: A:0.37, C:0.14, G:0.18, T:0.31
Consensus pattern (322 bp):
TATCCTAATGCAGAGAATCCATTTATAGTGCCTAACCACAAAAACAATAAAGATCATTACCAGAA
TCTATGTTTGTCTCAATTGAAGCACGAACATAGAATTTACAAAAATTGGAAAGAACAAAGCCTTT
GTTGCGAAACCAAAGCATCAATACCGTGTATCCTAATGAGAAGACTACATTTATGGTGCCTAAAT
CTAAAAAGAATGAGGATTAGTTTGAGTATTAATGTTTGGCTTTTAAGAGACAAACATTGATTCTA
ATGAAGATTTGGAATTTACAAAAAGAATTTACAAAAAAAATGAACTTATCGTCAATATCGTG
Found at i:42739 original size:476 final size:476
Alignment explanation
Indices: 41811--42914 Score: 1604
Period size: 476 Copynumber: 2.3 Consensus size: 476
41801 ATAGTGCCTA
* * * ** * * *
41811 ATCACAAAAAGAATGAAGATCTTTACTA-AATATATGTTTGTCTCATTTGTGGCGCGAACTTAGA
1 ATCAAAAAAAGAATGGAGATCATTACTAGAATCCATATTTGTCTCATTTGAGGCACGAACTTAGA
* *** * *
41875 ATTTACAAA-AATTGGAAAGAAGACAGCCTTTGTTGCGAAACCAAAGCATCAATATCATGTATCC
66 ATTTA-AAATGATTGGTGGGAAGAAAGCCTTTGTTGCGAAACCAAAGCATCAATATCGTGTATCC
* * * * *
41939 TAATAAGAAGACTATGTTTATGGTGCCTAATCGTGAAAAGAATGGGGATTAGTAAGAGTATTCGT
130 TAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGAGGATTACTAAGAGTATTCAT
* * * * * ** *
42004 ATTTGTCTTACTTGAGAGAATATCTTTGACTCTATCAAAAATGGCGTGAATAAAAGCTTTTCTTG
195 ATTTGGCTTACTTAAGAGAATAACGTTGACTCTATCAAAAACGGCAAGAAGAAAAGCTTTTCTTG
* * * * *
42069 AGACAACAAAGCATCAATGTCATGTATCGTAACGAAGGCAATGTGTTTTGGCTTCCCCATTTTGA
260 AGACAACAAAGCATCAATGTCATATATCCTAACGAAGGCAATGTGTTTGGGCTTCCCAATCTTGA
* * *
42134 AAAGAATGGAGACTGTTAGGAGAATCGATGCTTGTCTTATTCAAGGGATGAACTTTCATTTTAAG
325 AAAGAATGGAGACGGTTAGGAGAATCGATGCTTGTCGTATTCAAGGGATGAACTTTCATTTCAAG
* * * *
42199 GAAAATAGGGCGAAGAAAACATTTCCAGGAAAAAGCAAAACTTCAATGTCTTTTGTCCTAATCAG
390 AAAAATAGGACGAAAAAAACATTTCCAGGAAAAAGAAAAACTTCAATGTCTTTTGTCCTAATCAG
42264 GAGAATGTGTTTATAGTACTTT
455 GAGAATGTGTTTATAGTACTTT
42286 ATCAAAAAAAGAATGGAGATCATTACTAGAATCCATATTTGTCTCATTTGAGGCACGAACTTAGA
1 ATCAAAAAAAGAATGGAGATCATTACTAGAATCCATATTTGTCTCATTTGAGGCACGAACTTAGA
* * * *
42351 CTTTAAAATGGTTGGTGGGAAGAAAGCCTTTGTTGCGAAACCAAAGCATTAATACCGTGTATCCT
66 ATTTAAAATGATTGGTGGGAAGAAAGCCTTTGTTGCGAAACCAAAGCATCAATATCGTGTATCCT
* * * *
42416 AATGAGAAGAATATGTTTATGGTGCCTAGTCCT-AAAAGGAATGATGATTACTATGAGTATTCAT
131 AATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAA-GAATGAGGATTACTAAGAGTATTCAT
* * *
42480 GTTTGGCTTATTTAAGAGACA-AACGTTGATTCTATCAAAAACGGCAAGAAGAAAAGCTTTTCTT
195 ATTTGGCTTACTTAAGAGA-ATAACGTTGACTCTATCAAAAACGGCAAGAAGAAAAGCTTTTCTT
*
42544 GAGACACCAAAGCATCAATGTCATATATCCTAACGAAGGCAATGTGTTTGGGCTTCCCAATCTTG
259 GAGACAACAAAGCATCAATGTCATATATCCTAACGAAGGCAATGTGTTTGGGCTTCCCAATCTTG
* *
42609 AAAAGAATGGAGACGGTTATGAGAATTGATGCTTGTCGTATTCAAGGGATGAACTTTCATTTCAA
324 AAAAGAATGGAGACGGTTAGGAGAATCGATGCTTGTCGTATTCAAGGGATGAACTTTCATTTCAA
* * *
42674 GAAAAATAGGATGAAAAAAAGATTTCCAGGAAAAAGAAAAACTTCATTGTCTTTTGTCCTAATCA
389 GAAAAATAGGACGAAAAAAACATTTCCAGGAAAAAGAAAAACTTCAATGTCTTTTGTCCTAATCA
*
42739 GGAGAATGTGTTTATAGTGCTTT
454 GGAGAATGTGTTTATAGTACTTT
* *
42762 ATCAAAAAAAGAATGGAGATCATTACTAGAATCCATATTTATCTCATTTGAGTCACGAACTTAGA
1 ATCAAAAAAAGAATGGAGATCATTACTAGAATCCATATTTGTCTCATTTGAGGCACGAACTTAGA
* *
42827 GTTTACAATGATTGGTGGGAAGAAAGCCTTTGTTGCGAAACCAAAGCATCAATATCGTGTATCCT
66 ATTTAAAATGATTGGTGGGAAGAAAGCCTTTGTTGCGAAACCAAAGCATCAATATCGTGTATCCT
42892 AATGAGAAGACTATGTTTATGGT
131 AATGAGAAGACTATGTTTATGGT
42915 TGTCGTAACG
Statistics
Matches: 560, Mismatches: 65, Indels: 7
0.89 0.10 0.01
Matches are distributed among these distances:
475 32 0.06
476 527 0.94
477 1 0.00
ACGTcount: A:0.35, C:0.14, G:0.20, T:0.30
Consensus pattern (476 bp):
ATCAAAAAAAGAATGGAGATCATTACTAGAATCCATATTTGTCTCATTTGAGGCACGAACTTAGA
ATTTAAAATGATTGGTGGGAAGAAAGCCTTTGTTGCGAAACCAAAGCATCAATATCGTGTATCCT
AATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGAGGATTACTAAGAGTATTCATA
TTTGGCTTACTTAAGAGAATAACGTTGACTCTATCAAAAACGGCAAGAAGAAAAGCTTTTCTTGA
GACAACAAAGCATCAATGTCATATATCCTAACGAAGGCAATGTGTTTGGGCTTCCCAATCTTGAA
AAGAATGGAGACGGTTAGGAGAATCGATGCTTGTCGTATTCAAGGGATGAACTTTCATTTCAAGA
AAAATAGGACGAAAAAAACATTTCCAGGAAAAAGAAAAACTTCAATGTCTTTTGTCCTAATCAGG
AGAATGTGTTTATAGTACTTT
Found at i:46036 original size:52 final size:51
Alignment explanation
Indices: 45958--46106 Score: 217
Period size: 52 Copynumber: 2.9 Consensus size: 51
45948 CGAAATATGA
45958 AAATTTGCCTGCATGTATCGATACATTGAATAGTGTATCGATACATCTGGGC
1 AAATTTGCCTGCATGTATCGATACATTG-ATAGTGTATCGATACATCTGGGC
* *
46010 AAATTTGCCTGCATGTATCGATACATTTTATAATGTATCGATACATCTGGGC
1 AAATTTGCCTGCATGTATCGATACA-TTGATAGTGTATCGATACATCTGGGC
* * **
46062 AAATTTTCCTGCATGTATCTATACAAAGATCAGTGTATCGATACA
1 AAATTTGCCTGCATGTATCGATACATTGAT-AGTGTATCGATACA
46107 ATGTATCGAT
Statistics
Matches: 87, Mismatches: 8, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
51 2 0.02
52 83 0.95
53 2 0.02
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.34
Consensus pattern (51 bp):
AAATTTGCCTGCATGTATCGATACATTGATAGTGTATCGATACATCTGGGC
Found at i:46113 original size:13 final size:13
Alignment explanation
Indices: 46095--46119 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
46085 CAAAGATCAG
46095 TGTATCGATACAA
1 TGTATCGATACAA
46108 TGTATCGATACA
1 TGTATCGATACA
46120 TTCAAGTGAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:46197 original size:33 final size:33
Alignment explanation
Indices: 46160--46226 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
46150 AGTAGCTTAA
46160 ATTGTATCGATACAAAAAAATATGTATCGATAC
1 ATTGTATCGATACAAAAAAATATGTATCGATAC
* ***
46193 ATTGTATCGATACAACACTTTATGTATCGATAC
1 ATTGTATCGATACAAAAAAATATGTATCGATAC
46226 A
1 A
46227 AATCGTTGAA
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.40, C:0.15, G:0.12, T:0.33
Consensus pattern (33 bp):
ATTGTATCGATACAAAAAAATATGTATCGATAC
Found at i:46200 original size:13 final size:13
Alignment explanation
Indices: 46182--46206 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
46172 CAAAAAAATA
46182 TGTATCGATACAT
1 TGTATCGATACAT
46195 TGTATCGATACA
1 TGTATCGATACA
46207 ACACTTTATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:47845 original size:477 final size:477
Alignment explanation
Indices: 46493--49314 Score: 3561
Period size: 477 Copynumber: 5.9 Consensus size: 477
46483 GGTGTCTACA
* * *
46493 ATGGTGCCTAATCCT-AAAGGGAATGGGGATTAGTATGAGTATTCACGTTTGGCTTATTTAAGAG
1 ATGGTGCCTAATCCTGAAA-AGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAG
* ** *
46557 ACAAACATTGA-TTCTATCAAAAACAG-TAGGAAGAAAAGCTTTTCTTGAGACACCAAAGCATCA
65 ACAAACTTTGACTTCTATCAAAAATGGCGA-GAAGAAAAGCTTTTCTTGAGACACCAAAGCATCA
* *
46620 ATGTC-TGGTATCCTAACAAAGGCAATGTGTTTTGGCTTCCCAATCTTGAAAAAAATGGAGACTG
129 ATGTCAT-GTATCCTAACGAAGGCAATGTGTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTG
* * * * * *
46684 TTAGGAGAATCGATGCTTGTCTTATTCAAGGGATGGACTTTCATTTTAAGGAAAATAAGGCGAAG
193 TTACGAGAATCGATGCTTGTCTTATTCAAGGGATGAACTTTGATTTTAAGGATAATAGGGCAAAG
* * * * * * * *
46749 AAAAGATTTCCAGGAAAAAGAAAAACTTCATTGTCTTTTGTCCTAATTAGGAGAATGTGTTTATA
258 AAAAGATTTCCATGCAAAAGAAAATCATCAATGTCATTTATCCTAATGAGGAGAATGTGTTTATA
* * * * * * *
46814 GTGCTTTATCAAAAAAAGAATGCAGGTCATTACTAGAATCCATATTTGTCTCATTCGAGGAACGA
323 GTGCCTTATCACAAAAAGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGA
** * *
46879 ACTTAGACTTTACAATGATTGGTGGGAAGAAAGCCTTTGTTGCGAAACTAAAGCATCAATATCGT
388 ACTTAGACTTTACAAAAATTGGTGAGAAGAAAGCCTTTGTTGCGAAACCAAAGCATCAATATCGT
* *
46944 GTATCTTAATGAGAAGACTATGTAT
453 GTATCCTAATGAGAAGACTATGTTT
** * * *
46969 ATGGTGCCTAAAACT-AAAAGGAACGAGGATTAGTATGAGTATTCATGTTTGGCTTATTTAAGAG
1 ATGGTGCCTAATCCTGAAAA-GAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAG
* * * *
47033 ACAAACGTTG-TTTCTATCAAAAACGGCGCGAAGAAAAGCTTTTCTTGAGACA-CAAA-CGATCA
65 ACAAACTTTGACTTCTATCAAAAATGGCGAGAAGAAAAGCTTTTCTTGAGACACCAAAGC-ATCA
* * * *
47095 ATGTCAGGTATCCTAACAAAGGCAATGTGTTTTGGCATCCCAATCTTGAAAAGAAAGGAGACTGT
129 ATGTCATGTATCCTAACGAAGGCAATGTGTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTGT
* ** ** *
47160 TACGAGAATCGATGCTTGTCTTTTTCGGGGGATGAACTTTGATTTTAAGGATAATTTGGCAAAGC
194 TACGAGAATCGATGCTTGTCTTATTCAAGGGATGAACTTTGATTTTAAGGATAATAGGGCAAAGA
* ***
47225 AAAGATTTCCATGCAAAAGAAAATCATCAATGTCATTTATCCTAATGCGGAGAATCCATTTATAG
259 AAAGATTTCCATGCAAAAGAAAATCATCAATGTCATTTATCCTAATGAGGAGAATGTGTTTATAG
* * *
47290 TGCCTTATCACAAAAAGAATGAAGATCATTACTAGAATCTATGTTTGTCTTATTTGTGGCACGAA
324 TGCCTTATCACAAAAAGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAA
* ** * *
47355 CTTAGAATTTACAAAAATTGGAAAGAAGACAGCCTTTGTTGCGAAACCAAAGCATCAATATCATG
389 CTTAGACTTTACAAAAATTGGTGAGAAGAAAGCCTTTGTTGCGAAACCAAAGCATCAATATCGTG
* * *
47420 TGTCCTAATAAGAAGACTACGTTT
454 TATCCTAATGAGAAGACTATGTTT
* * * * * * *
47444 ATGGTGCCTAATCGTGAAAAAAATAGGGATTAGTAAGAGTATTCATATTTGTCTTACTTGAGAGA
1 ATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGA
* * * * * *
47509 CTATCTTTGACTT-TATCAAAAATGGCGCGAATAAAAGCTTTTCTTGAGACACTAAAGCGTCAAT
66 CAAACTTTGACTTCTATCAAAAATGGCGAGAAGAAAAGCTTTTCTTGAGACACCAAAGCATCAAT
* *
47573 GTCATGTATCCTAACGAAGGCAATGTGATTTGGCTTCCCAATCTTGAAAAGAATGGAGACTATTA
131 GTCATGTATCCTAACGAAGGCAATGTGTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTGTTA
* * * * * * *
47638 GGAGAATCGATGCTTGTTTTTTTTAAGGGATAAATTTTGATTTTAAGGACAATAGGGCAAAGAAA
196 CGAGAATCGATGCTTGTCTTATTCAAGGGATGAACTTTGATTTTAAGGATAATAGGGCAAAGAAA
* *
47703 AGATTTCCATGCAAAAAAAAAATCATCAATGTCATTTATCCTATTGAGGAGAATGTGTTTATAGT
261 AGATTTCCATGC-AAAAGAAAATCATCAATGTCATTTATCCTAATGAGGAGAATGTGTTTATAGT
* * *
47768 GCCTTATCACAGAAAGAATGAAGATCATTACTAGAATCTATGTTTGTCTAATTTGAGGCACGAAC
325 GCCTTATCACAAAAAGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAAC
* ** * **
47833 TTAGAATTTACAAAAATTGGAAAGAAGAAAGCCTTTGTTACGAAACCAAAATATCAATATCGTGT
390 TTAGACTTTACAAAAATTGGTGAGAAGAAAGCCTTTGTTGCGAAACCAAAGCATCAATATCGTGT
*
47898 ATCCTAATGAGAGGACTATGTTT
455 ATCCTAATGAGAAGACTATGTTT
*
47921 ATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTGTGAGTATTCATGTTTGTCTTATTTAAGAGA
1 ATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGA
* * *
47986 CAAACTTTTGAC-TCTATTAAAAATGGC-AGGAAGAAAAGCTTTTCGTGCGACACCAAAGCATCA
66 CAAAC-TTTGACTTCTATCAAAAATGGCGA-GAAGAAAAGCTTTTCTTGAGACACCAAAGCATCA
** * ** * *
48049 ATGTCATGGGTCCTAACGAAGGCAATGTGTTTTGGCTTTCCAATCTTGAAATCAAGGGAGACGGT
129 ATGTCATGTATCCTAACGAAGGCAATGTGTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTGT
* * ** *
48114 TACGAGAATCGAAGCTTCTCTTATTCAAGGGATGAACTTTGATTTTAAGGATAACT-GGGTGAGG
194 TACGAGAATCGATGCTTGTCTTATTCAAGGGATGAACTTTGATTTTAAGGATAA-TAGGGCAAAG
* * *
48178 AAAAGATTTCCATGCAAAAGAAAATCGTCAATGTCATTTATCCAAAT-ACAGAGAATGTGTTTAT
258 AAAAGATTTCCATGCAAAAGAAAATCATCAATGTCATTTATCCTAATGA-GGAGAATGTGTTTAT
* * * * * *
48242 AGTTCCTTATCACAAAAAGAATGAACATCGTTACTAGAATCCATGTGTGCCTCATTTGAGGCATG
322 AGTGCCTTATCACAAAAAGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACG
* * *
48307 AACTTAGACTTTACAACAATTGGTGGGAAGAAAGCCTTTGTTGTGAAACCAAAGCATCAATATCG
387 AACTTAGACTTTACAAAAATTGGTGAGAAGAAAGCCTTTGTTGCGAAACCAAAGCATCAATATCG
* *
48372 TATATCCTAATGATAAGACTATGTTT
452 TGTATCCTAATGAGAAGACTATGTTT
* * * * *
48398 ATGGTTCCTAATCCTGAAAAGAATTGGGATTAGTGTAAGTATTCATGTTTGTCTTCTTTAAGAGA
1 ATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGA
* * * * * *
48463 CAAATTTTTG-TTTCTATCAAAAAAGGCTAGAAGAAAAGCTTTTCTTGTGACACCAAAGCATTAA
66 CAAA-CTTTGACTTCTATCAAAAATGGCGAGAAGAAAAGCTTTTCTTGAGACACCAAAGCATCAA
*
48527 TGTCATGTATCCTAACGAAGGCAATGTGTTTTGGCTTCCCAATCTTGAAATGAATGGAGACTGTT
130 TGTCATGTATCCTAACGAAGGCAATGTGTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTGTT
* * * * ** *
48592 ACAAGAATCGATGCTTATCATATTGAAGGGATGAACACTGATTTTAAGGAAAATAGGGCAAAGAA
195 ACGAGAATCGATGCTTGTCTTATTCAAGGGATGAACTTTGATTTTAAGGATAATAGGGCAAAGAA
* * ** * * *
48657 ACGATTTCCATGCAAAAGAAAATCGTTGATGTCATTTATCCTATTGAGGAGATTGCGTTTATAGT
260 AAGATTTCCATGCAAAAGAAAATCATCAATGTCATTTATCCTAATGAGGAGAATGTGTTTATAGT
* ** * * * * *
48722 GCATTATCACAAAAAGTGTGAAAATCATTACTAGGATCCATGTTTGTCTCTTTTGTGGCATGAAC
325 GCCTTATCACAAAAAGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAAC
* * * * * * *
48787 TTAGACTTTACAACAATTGGTGGGAAGAAAGCTTTTTTTGCAAAATCAAAGCATCAATATCGTTT
390 TTAGACTTTACAAAAATTGGTGAGAAGAAAGCCTTTGTTGCGAAACCAAAGCATCAATATCGTGT
*
48852 ATCCTATTGAGAAGACTATGTTT
455 ATCCTAATGAGAAGACTATGTTT
* * * * *
48875 ATGGCGCCTAATCCTAAAAAGAATGGGGAAATAGTATGAGTATTCTTATTTGTCTTATTTAAGAG
1 ATGGTGCCTAATCCTGAAAAGAATGGGG-ATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAG
** *
48940 ACAAACTTTGA-TTCTATCAAAAGGGGCGAGAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAA
65 ACAAACTTTGACTTCTATCAAAAATGGCGAGAAGAAAAGCTTTTCTTGAGACACCAAAGCATCAA
* * * *
49004 TGTCGTGTATCCTAATGATGGCAATGTGTTTTGGCTT-CCAATCTTGAAAGGAATGGAGACTGTT
130 TGTCATGTATCCTAACGAAGGCAATGTGTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTGTT
* * *
49068 ACGAGAATCAATGCTTGTCTTATTCAAAGGATGAACTTTGATTTTAAGGATAATTGGGCAAAGAA
195 ACGAGAATCGATGCTTGTCTTATTCAAGGGATGAACTTTGATTTTAAGGATAATAGGGCAAAGAA
* * * * * *
49133 AAGATTTTCACGCAAAAGAAAATCATCAATGTCATTAATCCTAATGAGGAGAACGTGATTACAGT
260 AAGATTTCCATGCAAAAGAAAATCATCAATGTCATTTATCCTAATGAGGAGAATGTGTTTATAGT
* * * * **
49198 TCCTTATGACAAAAAGAATGAAGATCATTACTATAATCCATGTTTGTCTCATTTAAGGCAAAAAC
325 GCCTTATCACAAAAAGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAAC
* * * *
49263 TTAGACTTCACAAAAATTGGTGAGAAGAAAACCTTTGCTGCAAAACCAAAGC
390 TTAGACTTTACAAAAATTGGTGAGAAGAAAGCCTTTGTTGCGAAACCAAAGC
49315 CTATATCGTT
Statistics
Matches: 2025, Mismatches: 299, Indels: 44
0.86 0.13 0.02
Matches are distributed among these distances:
474 1 0.00
475 395 0.20
476 473 0.23
477 950 0.47
478 205 0.10
479 1 0.00
ACGTcount: A:0.35, C:0.15, G:0.20, T:0.30
Consensus pattern (477 bp):
ATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGA
CAAACTTTGACTTCTATCAAAAATGGCGAGAAGAAAAGCTTTTCTTGAGACACCAAAGCATCAAT
GTCATGTATCCTAACGAAGGCAATGTGTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTGTTA
CGAGAATCGATGCTTGTCTTATTCAAGGGATGAACTTTGATTTTAAGGATAATAGGGCAAAGAAA
AGATTTCCATGCAAAAGAAAATCATCAATGTCATTTATCCTAATGAGGAGAATGTGTTTATAGTG
CCTTATCACAAAAAGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACT
TAGACTTTACAAAAATTGGTGAGAAGAAAGCCTTTGTTGCGAAACCAAAGCATCAATATCGTGTA
TCCTAATGAGAAGACTATGTTT
Found at i:50266 original size:475 final size:476
Alignment explanation
Indices: 49370--51605 Score: 2701
Period size: 475 Copynumber: 4.7 Consensus size: 476
49360 TCACAAAATG
* * * *
49370 AAGAATTCCATGCAAAAGAAAAACACCAATGTCTTTTATCATAATGAGGAGAATGTCTTTATAGC
1 AAGATTTCCATGCAAAAGAAAATCATCAATGTCTTTTATCCTAATGAGGAGAATGTCTTTATAGC
* * * *
49435 GCCTTATCACAAAAAGAATGAAGATCATTAGTAGGATCTAAGTTTGTTTCATTTGAGGCACAAAC
66 GCCTTATCACAAAAAGAATGAAGATCATTACTAGGATCTATGTTTGTCTCATTTGAGGCACGAAC
* *
49500 TTAGACTTTACAAC-ATTCGGTGGGAAGAAAGCCTTTGTTGCAAAACCAAAGCATCAATATCGTA
131 TTAGACTTTACAACAATT-GGTGGGAAGAAAGCCTTTGTTGCAAAACTAAAGCATCAATATCGTG
* * * * *
49564 TATCCTATTAAGAAGACTATGTTTATGGTGCCTAATCTTGAAAAGAATAGGGATTAGTGTGACTA
195 TATCCTATTGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTA
* ** * * *
49629 TTCATGTTTCTCCCGTTTAAGAGACAAACTTTGTTTTTATCAAAAAGGGCGGGAAGAAAAGTTTT
260 TTCATGTTTGTCCTATTTAAGAGACAAACTTTGATTCTATCAAAAAGGGCGGGAAGAAAAGCTTT
* * *
49694 TCTTGTGACACCAAAGCATCAATGTCGTGTTTCCTAACGAAGGCAATGTGTTTTGGCTTCCCAAT
325 TCTTGCGACACCAAAGCATCAATGTCGTGTATCCTAATGAAGGCAATGTGTTTTGGCTTCCCAAT
* * * * * *
49759 CTTGAAATGAATAGAGACTGTTACGAGAATCGAAGCTTATCATATTGAAGGGATGAACATTGATT
390 CTTGAAAAGAATGGAGACTGTTACGAGAATCGAAGCTTATCTTATTCAAGGGATGAACTTTCATT
49824 TTAAGGAAAATAGGGCAAAGAA
455 TTAAGGAAAATAGGGCAAAGAA
* ** * * * * * *
49846 ATGATTTCCATGCAAAAGAAAATCATTGATGTCATTTATCTTATTGAGGAGATTGTGTTTATAGT
1 AAGATTTCCATGCAAAAGAAAATCATCAATGTCTTTTATCCTAATGAGGAGAATGTCTTTATAGC
* * ** * * * *
49911 GCATTATGACAAAAAGTGTGAAAATCATTACTAGGATCCATGTTTGTCTCTTTTGTGGCACGAAC
66 GCCTTATCACAAAAAGAATGAAGATCATTACTAGGATCTATGTTTGTCTCATTTGAGGCACGAAC
* * * * * *
49976 TTAGAC-TTATAACAATTGGTGGGAAGAAAGCTTTTTTTGCAAAACCAAAGCATCAATATTGTTT
131 TTAGACTTTACAACAATTGGTGGGAAGAAAGCCTTTGTTGCAAAACTAAAGCATCAATATCGTGT
* * * *
50040 ATCCTATTGAGAAGACTATGTTTATGGCGCCTAATCCTAAAAACAGTGGGGATTAGTATGAGTAT
196 ATCCTATTGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTAT
* * * *
50105 TCTTATTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAGGGGCGGGAAGAAAAGCTTTT
261 TCATGTTTGTCCTATTTAAGAGACAAACTTTGATTCTATCAAAAAGGGCGGGAAGAAAAGCTTTT
*
50170 CTTGCGACACCAAAGCATCAATGTCGTGTATCCTAATGATGGCAATGTGTTTTGGCTTCCCAATC
326 CTTGCGACACCAAAGCATCAATGTCGTGTATCCTAATGAAGGCAATGTGTTTTGGCTTCCCAATC
* * * * *
50235 TAGAAAAGAATGGAGACTGTTAGGAGAATCGATGCTTTTCTTATTCAAGAGATGAACTTTCA-TT
391 TTGAAAAGAATGGAGACTGTTACGAGAATCGAAGCTTATCTTATTCAAGGGATGAACTTTCATTT
50299 TAAGGAAAATAGGGCAAAGAA
456 TAAGGAAAATAGGGCAAAGAA
* * * * *
50320 AAGATTTCAATGCGAAAGAAAATCATCAATGTCTTTTATCCTAATGAGGAGAATGTATTTACAGA
1 AAGATTTCCATGCAAAAGAAAATCATCAATGTCTTTTATCCTAATGAGGAGAATGTCTTTATAGC
* * * * * *
50385 GCCTTATCACAAAAAGTATGAAGATGATTACAAGAATCCATATTTGTCTCATTTGAGGCACGAAC
66 GCCTTATCACAAAAAGAATGAAGATCATTACTAGGATCTATGTTTGTCTCATTTGAGGCACGAAC
* * * * * * ** ** *
50450 TTAGACTTTACAAAAAATGGTAGGAA-AATGCCCTTCTTGTGAAACTAAAATATCAATATCATGT
131 TTAGACTTTACAACAATTGGTGGGAAGAAAGCCTTTGTTGCAAAACTAAAGCATCAATATCGTGT
* *
50514 ATTCTAATGAGAAGACT-TCGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTA
196 ATCCTATTGAGAAGACTAT-GTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTA
* * * * * * * *
50578 TTCATGTTTG-CCTTATTTGAGAGATAGACTATGATTCCATCAAAATCGGTC-TGAAGAAAAGCT
260 TTCATGTTTGTCC-TATTTAAGAGACAAACTTTGATTCTATCAAAA-AGGGCGGGAAGAAAAGCT
* * * * * * * *
50641 TTTCTTGAGACACAAAAGCATCAATGTCCTATATCTTAATAAAGGCAAAGTGTTTTGGCTTCCAA
323 TTTCTTGCGACACCAAAGCATCAATGTCGTGTATCCTAATGAAGGCAATGTGTTTTGGCTTCCCA
* * *
50706 ATCTTGAAAAGAGTGGAGACTATTACGAGAATCGATGC-TAGTCTTATTCAAGGGATGAACTTTC
388 ATCTTGAAAAGAATGGAGACTGTTACGAGAATCGAAGCTTA-TCTTATTCAAGGGATGAACTTTC
*
50770 ATTTTAAGAAAAATAGGGCAAAGAA
452 ATTTTAAGGAAAATAGGGCAAAGAA
* * *
50795 AATATTTTCATGCAAAAGAAAAACATCAATGTCTTTTATCCTAATGAGGAGAATGTCTTTATAGC
1 AAGATTTCCATGCAAAAGAAAATCATCAATGTCTTTTATCCTAATGAGGAGAATGTCTTTATAGC
* * * *
50860 ACTTTATCACAAAAAGAATGAAGATCATTACTAGGATCTATGTTTGTTTCATTTGAGGCACAAAC
66 GCCTTATCACAAAAAGAATGAAGATCATTACTAGGATCTATGTTTGTCTCATTTGAGGCACGAAC
* * * * * * *
50925 TTAGACTTTACAAC-ATTCAGTGGGAGGAAAGCCTTTGTCGCGAAACTGAAGCTTCATTATCGTG
131 TTAGACTTTACAACAATT-GGTGGGAAGAAAGCCTTTGTTGCAAAACTAAAGCATCAATATCGTG
* * * * * *
50989 TATCTTATTGAGAAGACTATGTTTATGGTGCCAAATCCTAAAAAGAATAGGGATTAGTCTGACTA
195 TATCCTATTGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTA
* * * *
51054 TTCATGTTTGTCCTGTGTAAGAGACAAACTTTGATTCTATCAAAAAAGGCAGGAAGAAAAG-TTT
260 TTCATGTTTGTCCTATTTAAGAGACAAACTTTGATTCTATCAAAAAGGGCGGGAAGAAAAGCTTT
* * *
51118 TCTTGTGACACCAAAGCATTAATGTCATGTATCCTAAT------AATGTGTTTTGGCTTCCCAAT
325 TCTTGCGACACCAAAGCATCAATGTCGTGTATCCTAATGAAGGCAATGTGTTTTGGCTTCCCAAT
* * * *
51177 CTTGAAAAGAATGGAGACTGTTAGGAGAATCGATA-CTTGTTTTATTCAAGGGATGAACTTTGAT
390 CTTGAAAAGAATGGAGACTGTTACGAGAATCGA-AGCTTATCTTATTCAAGGGATGAACTTTCAT
* *
51241 TTTAAGGATAATTGGGCAAAGAA
454 TTTAAGGAAAATAGGGCAAAGAA
* ** * * *
51264 AAGATTTCCATGCAAAAGAAAATCATCAACGTCAATTATCCTATTGTA-GAGAATTTGTTTATAG
1 AAGATTTCCATGCAAAAGAAAATCATCAATGTCTTTTATCCTAATG-AGGAGAATGTCTTTATAG
* * *
51328 TGCCTTATCACAAAAAGAATGAAGATCATTACTAGAATCTATGTTTGTCTAATTTGAGGCACGAA
65 CGCCTTATCACAAAAAGAATGAAGATCATTACTAGGATCTATGTTTGTCTCATTTGAGGCACGAA
* **** *
51393 CTTAGAATTTACAA-AATTTGAAAAGAAGAAAGCCTTTGTTGCAAAACTAAAGGATCAATATCGT
130 CTTAGACTTTACAACAA-TTGGTGGGAAGAAAGCCTTTGTTGCAAAACTAAAGCATCAATATCGT
* * * * * *
51457 GTATCCTAATGAAAAGATTTTGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTGTGAGC
194 GTATCCTATTGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGT
* * ** *
51522 ATTCATGTTTGTCCTATTTAAGAGATAAACTTTTGATTCCATCAAAATTGGTGGGAAGAAAAGCT
259 ATTCATGTTTGTCCTATTTAAGAGACAAAC-TTTGATTCTATCAAAAAGGGCGGGAAGAAAAGCT
* *
51587 TTTCCTGCAACACCAAAGC
323 TTTCTTGCGACACCAAAGC
51606 TAGAATGGAG
Statistics
Matches: 1485, Mismatches: 256, Indels: 43
0.83 0.14 0.02
Matches are distributed among these distances:
469 332 0.22
470 31 0.02
471 17 0.01
473 3 0.00
474 380 0.26
475 479 0.32
476 240 0.16
477 3 0.00
ACGTcount: A:0.35, C:0.14, G:0.19, T:0.31
Consensus pattern (476 bp):
AAGATTTCCATGCAAAAGAAAATCATCAATGTCTTTTATCCTAATGAGGAGAATGTCTTTATAGC
GCCTTATCACAAAAAGAATGAAGATCATTACTAGGATCTATGTTTGTCTCATTTGAGGCACGAAC
TTAGACTTTACAACAATTGGTGGGAAGAAAGCCTTTGTTGCAAAACTAAAGCATCAATATCGTGT
ATCCTATTGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTAT
TCATGTTTGTCCTATTTAAGAGACAAACTTTGATTCTATCAAAAAGGGCGGGAAGAAAAGCTTTT
CTTGCGACACCAAAGCATCAATGTCGTGTATCCTAATGAAGGCAATGTGTTTTGGCTTCCCAATC
TTGAAAAGAATGGAGACTGTTACGAGAATCGAAGCTTATCTTATTCAAGGGATGAACTTTCATTT
TAAGGAAAATAGGGCAAAGAA
Found at i:52662 original size:159 final size:157
Alignment explanation
Indices: 51988--53146 Score: 413
Period size: 159 Copynumber: 7.3 Consensus size: 157
51978 CGATTGGTGG
* * * * *
51988 GAAG-AAAGCCTTT-GTAGCGAAACCAAAGCATCAATATCCTGTATCCTAATGAGAAAACTATGT
1 GAAGAAAAGCTTTTCGT-GCGACACCAAAGCATCAATGTCGTGTATCCTAATGAGAAGACTATGT
* * * * *
52051 TTATGGTGCCTAATCCTAAAAGGAA-GGGGATTAGTATGAGTAT-TATTGTTTGGCTTATTTAAG
65 TTATGGTGCCTAATCCTAAAA-GAATGGAGATCAGTATGAGAATCGA-TGTTTGTCTTATTTAAG
* ** *
52114 AGACAAACGTTGATTCTGTCAAAAATAGCAA
128 AGACAAACTTTGATTCCATCAAAAAT-GAAA
* * * * * * *
52145 GAGGAAAAGCTTTTCTTGAGACACCAAAGCATCAATGTCGGGTATCCTAA--CGAAGGCAATGTG
1 GAAGAAAAGCTTTTCGTGCGACACCAAAGCATCAATGTCGTGTATCCTAATGAGAAGACTATGT-
* * * * ** * * **
52208 TTTTGGATTCCCAATCTTGAAAAGAAAAGAGA-CTAGTACGAGAATTGATCCTTGTCTT-TTTCA
65 TTATGG-TGCCTAATCCT-AAAAGAATGGAGATC-AGTATGAGAATCGATGTTTGTCTTATTT-A
* * ** ** ** * **
52271 GGGGATGAACTTTGATTTTAAGGAAAATTTGGCA
126 AGAGACAAACTTTGA-TTCCATCAAAA-ATGAAA
* * * ** * ** * * * *
52305 -AAGAAAAGGTTTCCATGTAAAAGAAAATCATCAATGTCATTTA-CCTAA--ATGCAGA-TAATG
1 GAAGAAAAGCTTTTCGTGCGACACCAAAGCATCAATGTCGTGTATCCTAATGA-GAAGACT-ATG
* * * * * * *
52365 CATTTATAGTGCTTTATCACAAAAAGAATGAAGATCA-T-TGCCAGAATCTATGTTTGTCTCATT
64 --TTTATGGTGCCTAATC-CTAAAAGAATGGAGATCAGTATG--AGAATCGATGTTTGTCTTATT
* * * * *
52428 T--GAGGCATGAACTTAGAATT-TA-GAAAAATTGGAAG
124 TAAGAGACA--AACTTTG-ATTCCATCAAAAA-T-GAAA
* * * *
52463 GAAG-AAAGCCTTT-GTTGGGACACCGAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGT
1 GAAGAAAAGCTTTTCG-TGCGACACCAAAGCATCAATGTCGTGTATCCTAATGAGAAGACTATGT
* * * * *
52526 TTATGGTGCCAAATCCTGAAAAGAATGGGGATTAGTGTGAGTATTC-ATGTTTGTCTTATTTAAG
65 TTATGGTGCCTAATCCT-AAAAGAATGGAGATCAGTATGAG-AATCGATGTTTGTCTTATTTAAG
52590 AGACAAACTTTGATTCCATCAAAAATGACAA
128 AGACAAACTTTGATTCCATCAAAAATGA-AA
* *
52621 GAAGAAAAGCTTTTCGTGCGACACCAAAGCATCAATGTCGTGTGTCCTAATGATG--G-CAATGT
1 GAAGAAAAGCTTTTCGTGCGACACCAAAGCATCAATGTCGTGTATCCTAATGA-GAAGACTATGT
* * * * * * * * * *
52683 GTTTTGGCTTCCCAATCTTGAAATGAATGGAGACCATTATGAGAATCGATGCTTCTCTTATTCAA
65 -TTATGG-TGCCTAATCCT-AAAAGAATGGAGATCAGTATGAGAATCGATGTTTGTCTTATTTAA
* ** ** ** * * ***
52748 GGGATGAACTTTGATTTTAAGGATAATTGGGT
127 GAGACAAACTTTGA-TTCCATCAAAAATGAAA
* * * * * ** * * * * * * * *
52780 GAAGAAAAGATTTCCATGCAAAAAAAAATCATTAATGTCATTTATCCTAATGCGGAGAATCTGTT
1 GAAGAAAAGCTTTTCGTGCGACACCAAAGCATCAATGTCGTGTATCCTAATGAGAAGACTATGTT
* * * * * * * *
52845 TATAGTGCCTTATCATAGAAAGAATGAAGATCATTACT-AGAATCTATGTTTGTCTAATTTGAG-
66 TATGGTGCCTAATCCTA-AAAGAATGGAGATCAGTA-TGAGAATCGATGTTTGTCTTATTTAAGA
* *
52908 GCACGAACTTAGAATT-CA-CAAAAATTGGAAA
129 G-ACAAACTTTG-ATTCCATCAAAAA-T-GAAA
* * * ** * *
52939 GAAG-AAAGCCTTT-GTTACGAAACCAAAATATCAATATCGTGTATCCTAATGAGAAGACTATAT
1 GAAGAAAAGCTTTTCG-TGCGACACCAAAGCATCAATGTCGTGTATCCTAATGAGAAGACTATGT
* * * * *
53002 TTATGGTGCCTAATCCTAAAAGGAATGGGGATTAGTATGAGTATTC-ATATTTGTCTTATTTAGG
65 TTATGGTGCCTAATCCTAAAA-GAATGGAGATCAGTATGAG-AATCGATGTTTGTCTTATTTAAG
* * * *
53066 AGACAAACTTTGATTCTATCAGAAACGAGTAG
128 AGACAAACTTTGATTCCATCAAAAATGA--AA
* *
53098 GAAGAAAAGCTTTTCTTGAC-ACACCAAAGAATCAATGTCGTGTATCCTA
1 GAAGAAAAGCTTTTCGTG-CGACACCAAAGCATCAATGTCGTGTATCCTA
53147 TCGATGGCAA
Statistics
Matches: 706, Mismatches: 228, Indels: 133
0.66 0.21 0.12
Matches are distributed among these distances:
156 8 0.01
157 40 0.06
158 240 0.34
159 327 0.46
160 83 0.12
161 8 0.01
ACGTcount: A:0.35, C:0.14, G:0.20, T:0.30
Consensus pattern (157 bp):
GAAGAAAAGCTTTTCGTGCGACACCAAAGCATCAATGTCGTGTATCCTAATGAGAAGACTATGTT
TATGGTGCCTAATCCTAAAAGAATGGAGATCAGTATGAGAATCGATGTTTGTCTTATTTAAGAGA
CAAACTTTGATTCCATCAAAAATGAAA
Found at i:52787 original size:476 final size:478
Alignment explanation
Indices: 51644--53364 Score: 2254
Period size: 476 Copynumber: 3.6 Consensus size: 478
51634 TTGAGAAACT
* * ***
51644 AACTTCGATTCTATCAAAAACG-GTGGGAAGAAAAGCTTTTCTTGAGACACCAAAGCATCAATGT
1 AACTTTGATTCTATCAAAAATGAGCAAGAAGAAAAGCTTTTCTTGAGACACCAAAGCATCAATGT
* * * *
51708 CATGTATCCTAACGAAGGCAATGTGTTTTGCCTTCCCAATCTTGAAAAGAATGGGGACTGTTAGG
66 CGTGTATCCTAACGAAGGCAATGTGTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTATTAGG
* * *
51773 AGAATGGATGCTTGTCTTATTCAAGGGATGAACTTTCATTTTAAGGAAAATAGGGCAAAGAAAAT
131 AGAATCGATGCTTGTCTTATTCAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAG
* * * * * * * *
51838 ATTTCCAGGAAAAAGAAAAACTTCAATGTCTTTTGTCCTAAT-TAGGAAAATGTGTTTATAGTGC
196 ATTTCCATGCAAAAGAAAAACATCAATGTCATTTGACCTAATGCAGGAGAATGCGTTTATAGTGC
* * *
51902 TTTATCA-AAAAATGAATGGAGATCATTACTAGAATCCATATTTGTCTCATTTGA-GCAACGAAC
261 TTTATCACAAAAA-GAATGAAGATCATTACTAGAATCTATGTTTGTCTCATTTGAGGC-ACGAAC
* *** ** * *
51965 TTAGACTTTACACCGATTGGTGGGAAGAAAGCCTTTGTAGCGAAACCAAAGCATCAATATCCTGT
324 TTAGAATTTACAAAAATTGGAAGGAAGAAAGCCTTTGTTGCGAAACCAAAGCATCAATATCGTGT
*
52030 ATCCTAATGAGAAAACTATGTTTATGGTGCCTAATCCTAAAAGGAA-GGGGATTAGTATGAGTAT
389 ATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTAAAAGGAATGGGGATTAGTATGAGTAT
*
52094 T-ATTGTTTGGCTTATTTAAGAGACA
454 TCA-TGTTTGTCTTATTTAAGAGACA
* * *
52119 AACGTTGATTCTGTCAAAAAT-AGCAAGAGGAAAAGCTTTTCTTGAGACACCAAAGCATCAATGT
1 AACTTTGATTCTATCAAAAATGAGCAAGAAGAAAAGCTTTTCTTGAGACACCAAAGCATCAATGT
* * ** * *
52183 CGGGTATCCTAACGAAGGCAATGTGTTTTGGATTCCCAATCTTGAAAAGAAAAGAGACTAGTACG
66 CGTGTATCCTAACGAAGGCAATGTGTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTATTAGG
* * * * **
52248 AGAATTGATCCTTGTCTTTTTCAGGGGATGAACTTTGATTTTAAGGAAAATTTGGCAAAGAAAAG
131 AGAATCGATGCTTGTCTTATTCAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAG
* * * * *
52313 GTTTCCATGTAAAAGAAAATCATCAATGTCATTT-ACCTAAATGCA-GATAATGCATTTATAGTG
196 ATTTCCATGCAAAAGAAAAACATCAATGTCATTTGACCT-AATGCAGGAGAATGCGTTTATAGTG
* * *
52376 CTTTATCACAAAAAGAATGAAGATCATTGCCAGAATCTATGTTTGTCTCATTTGAGGCATGAACT
260 CTTTATCACAAAAAGAATGAAGATCATTACTAGAATCTATGTTTGTCTCATTTGAGGCACGAACT
* * * *
52441 TAGAATTTAGAAAAATTGGAAGGAAGAAAGCCTTTGTTGGGACACCGAAGCATCAATATCGTGTA
325 TAGAATTTACAAAAATTGGAAGGAAGAAAGCCTTTGTTGCGAAACCAAAGCATCAATATCGTGTA
* *
52506 TCCTAATGAGAAGACTATGTTTATGGTGCCAAATCCTGAAAA-GAATGGGGATTAGTGTGAGTAT
390 TCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCT-AAAAGGAATGGGGATTAGTATGAGTAT
52570 TCATGTTTGTCTTATTTAAGAGACA
454 TCATGTTTGTCTTATTTAAGAGACA
* * *
52595 AACTTTGATTCCATCAAAAATGA-CAAGAAGAAAAGCTTTTCGTGCGACACCAAAGCATCAATGT
1 AACTTTGATTCTATCAAAAATGAGCAAGAAGAAAAGCTTTTCTTGAGACACCAAAGCATCAATGT
* * * * * *
52659 CGTGTGTCCTAATGATGGCAATGTGTTTTGGCTTCCCAATCTTGAAATGAATGGAGACCATTATG
66 CGTGTATCCTAACGAAGGCAATGTGTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTATTAGG
* * * **
52724 AGAATCGATGCTTCTCTTATTCAAGGGATGAACTTTGATTTTAAGGATAATTGGGTGAAGAAAAG
131 AGAATCGATGCTTGTCTTATTCAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAG
*
52789 ATTTCCATGCAAAA-AAAAATCATTAATGTCATTT-ATCCTAATGC-GGAGAAT-CTGTTTATAG
196 ATTTCCATGCAAAAGAAAAA-CATCAATGTCATTTGA-CCTAATGCAGGAGAATGC-GTTTATAG
* * * *
52850 TGCCTTATCATAGAAAGAATGAAGATCATTACTAGAATCTATGTTTGTCTAATTTGAGGCACGAA
258 TGCTTTATCACAAAAAGAATGAAGATCATTACTAGAATCTATGTTTGTCTCATTTGAGGCACGAA
* * * **
52915 CTTAGAATTCACAAAAATTGGAAAGAAGAAAGCCTTTGTTACGAAACCAAAATATCAATATCGTG
323 CTTAGAATTTACAAAAATTGGAAGGAAGAAAGCCTTTGTTGCGAAACCAAAGCATCAATATCGTG
*
52980 TATCCTAATGAGAAGACTATATTTATGGTGCCTAATCCTAAAAGGAATGGGGATTAGTATGAGTA
388 TATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTAAAAGGAATGGGGATTAGTATGAGTA
* *
53045 TTCATATTTGTCTTATTTAGGAGACA
453 TTCATGTTTGTCTTATTTAAGAGACA
* * * * * *
53071 AACTTTGATTCTATCAGAAACGAGTAGGAAGAAAAGCTTTTCTTGACACACCAAAGAATCAATGT
1 AACTTTGATTCTATCAAAAATGAGCAAGAAGAAAAGCTTTTCTTGAGACACCAAAGCATCAATGT
* * * *
53136 CGTGTATCCTATCGATGGCAATGTGTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTGTAAGG
66 CGTGTATCCTAACGAAGGCAATGTGTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTATTAGG
** * *
53201 AGACGCGATGCTTGTCTCATTCAAGGGATGAACTTTTATTTTAAGGAAAATAGGGCAAAGAAAAG
131 AGAATCGATGCTTGTCTTATTCAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAG
** * *
53266 ATTTCCATGCAAAAGAAAAACATCAATGTGTTTTGTCCTAATG-AGGAGAATGTGTTTATAGTGG
196 ATTTCCATGCAAAAGAAAAACATCAATGTCATTTGACCTAATGCAGGAGAATGCGTTTATAGT-G
*
53330 C-TTATCACAAAAAGAA-GAAGGATCACTACTAGAAT
260 CTTTATCACAAAAAGAATGAA-GATCATTACTAGAAT
53365 TGATGAAAAC
Statistics
Matches: 1079, Mismatches: 146, Indels: 40
0.85 0.12 0.03
Matches are distributed among these distances:
474 3 0.00
475 363 0.34
476 478 0.44
477 228 0.21
478 7 0.01
ACGTcount: A:0.35, C:0.14, G:0.20, T:0.30
Consensus pattern (478 bp):
AACTTTGATTCTATCAAAAATGAGCAAGAAGAAAAGCTTTTCTTGAGACACCAAAGCATCAATGT
CGTGTATCCTAACGAAGGCAATGTGTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTATTAGG
AGAATCGATGCTTGTCTTATTCAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAG
ATTTCCATGCAAAAGAAAAACATCAATGTCATTTGACCTAATGCAGGAGAATGCGTTTATAGTGC
TTTATCACAAAAAGAATGAAGATCATTACTAGAATCTATGTTTGTCTCATTTGAGGCACGAACTT
AGAATTTACAAAAATTGGAAGGAAGAAAGCCTTTGTTGCGAAACCAAAGCATCAATATCGTGTAT
CCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTAAAAGGAATGGGGATTAGTATGAGTATTC
ATGTTTGTCTTATTTAAGAGACA
Found at i:56533 original size:13 final size:13
Alignment explanation
Indices: 56515--56540 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
56505 TACAGCAAGT
56515 ATGTATCGATACA
1 ATGTATCGATACA
56528 ATGTATCGATACA
1 ATGTATCGATACA
56541 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:58796 original size:21 final size:21
Alignment explanation
Indices: 58758--58802 Score: 56
Period size: 22 Copynumber: 2.1 Consensus size: 21
58748 TTGCAAGTTG
*
58758 AAATAAAGAAGTTGGCTAATGA
1 AAATAAAGAAGTTAGCTAA-GA
*
58780 AAATAATGAA-TTAGCTAAGA
1 AAATAAAGAAGTTAGCTAAGA
58800 AAA
1 AAA
58803 ATGAAAACTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 5 0.24
21 7 0.33
22 9 0.43
ACGTcount: A:0.56, C:0.04, G:0.18, T:0.22
Consensus pattern (21 bp):
AAATAAAGAAGTTAGCTAAGA
Found at i:60625 original size:15 final size:15
Alignment explanation
Indices: 60605--60635 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
60595 TAAAAATGTC
*
60605 CAAAATGAGGAAGCT
1 CAAAATGAAGAAGCT
60620 CAAAATGAAGAAGCT
1 CAAAATGAAGAAGCT
60635 C
1 C
60636 CAAACAAAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.48, C:0.16, G:0.23, T:0.13
Consensus pattern (15 bp):
CAAAATGAAGAAGCT
Found at i:62728 original size:20 final size:20
Alignment explanation
Indices: 62649--62728 Score: 88
Period size: 20 Copynumber: 3.8 Consensus size: 20
62639 AATGTCCAAA
*
62649 ATGTATCGATACATGTTTCT
1 ATGTATCGATACATTTTTCT
*
62669 GTGTATCGATACATTTGGAAATTCT
1 ATGTATCGATACATTT-----TTCT
62694 ATGTATCGATACATTTTTCT
1 ATGTATCGATACATTTTTCT
*
62714 TTGTATCGATACATT
1 ATGTATCGATACATT
62729 GTATCGATAC
Statistics
Matches: 51, Mismatches: 4, Indels: 10
0.78 0.06 0.15
Matches are distributed among these distances:
20 32 0.63
25 19 0.37
ACGTcount: A:0.26, C:0.14, G:0.15, T:0.45
Consensus pattern (20 bp):
ATGTATCGATACATTTTTCT
Found at i:62732 original size:13 final size:13
Alignment explanation
Indices: 62714--62752 Score: 69
Period size: 13 Copynumber: 3.0 Consensus size: 13
62704 ACATTTTTCT
62714 TTGTATCGATACA
1 TTGTATCGATACA
62727 TTGTATCGATACA
1 TTGTATCGATACA
*
62740 CTGTATCGATACA
1 TTGTATCGATACA
62753 GGGTGATTAT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 25 1.00
ACGTcount: A:0.31, C:0.18, G:0.15, T:0.36
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:62916 original size:20 final size:20
Alignment explanation
Indices: 62873--62918 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 20
62863 AAATCTTTTG
62873 CAAAATACTTGTTTTTCACTT
1 CAAAATACTTGTTTTTCAC-T
*
62894 CAAATTACTTCGTTTTTCA-T
1 CAAAATACTT-GTTTTTCACT
62914 CAAAA
1 CAAAA
62919 CCAGCATCAA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
20 5 0.23
21 9 0.41
22 8 0.36
ACGTcount: A:0.33, C:0.20, G:0.04, T:0.43
Consensus pattern (20 bp):
CAAAATACTTGTTTTTCACT
Found at i:65290 original size:13 final size:13
Alignment explanation
Indices: 65272--65297 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
65262 TACAGCAAGT
65272 ATGTATCGATACA
1 ATGTATCGATACA
65285 ATGTATCGATACA
1 ATGTATCGATACA
65298 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:67548 original size:21 final size:21
Alignment explanation
Indices: 67515--67559 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
67505 TTGCAAGTTG
*
67515 AAATAAAGAAGTTGGCTAATGA
1 AAATAAAGAAGTTAGCTAA-GA
*
67537 AAATAATG-AGTTAGCTAAGA
1 AAATAAAGAAGTTAGCTAAGA
67557 AAA
1 AAA
67560 ATGAAAACTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 5 0.24
21 9 0.43
22 7 0.33
ACGTcount: A:0.53, C:0.04, G:0.20, T:0.22
Consensus pattern (21 bp):
AAATAAAGAAGTTAGCTAAGA
Found at i:69383 original size:15 final size:15
Alignment explanation
Indices: 69363--69393 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
69353 TAAAAATGTC
*
69363 CAAAATGAGGAAGCT
1 CAAAATGAAGAAGCT
69378 CAAAATGAAGAAGCT
1 CAAAATGAAGAAGCT
69393 C
1 C
69394 CAAACGAAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.48, C:0.16, G:0.23, T:0.13
Consensus pattern (15 bp):
CAAAATGAAGAAGCT
Found at i:71485 original size:20 final size:20
Alignment explanation
Indices: 71406--71485 Score: 79
Period size: 20 Copynumber: 3.8 Consensus size: 20
71396 AATGTCCAAA
*
71406 ATGTATCGATACATGTTTCT
1 ATGTATCGATACATTTTTCT
* *
71426 GTGTATCGATACATCTGGAAATTCT
1 ATGTATCGATACAT-T----TTTCT
71451 ATGTATCGATACATTTTTCT
1 ATGTATCGATACATTTTTCT
*
71471 TTGTATCGATACATT
1 ATGTATCGATACATT
71486 GTATCGATAC
Statistics
Matches: 49, Mismatches: 6, Indels: 10
0.75 0.09 0.15
Matches are distributed among these distances:
20 31 0.63
24 1 0.02
25 17 0.35
ACGTcount: A:0.26, C:0.15, G:0.15, T:0.44
Consensus pattern (20 bp):
ATGTATCGATACATTTTTCT
Found at i:71489 original size:13 final size:13
Alignment explanation
Indices: 71471--71509 Score: 69
Period size: 13 Copynumber: 3.0 Consensus size: 13
71461 ACATTTTTCT
71471 TTGTATCGATACA
1 TTGTATCGATACA
71484 TTGTATCGATACA
1 TTGTATCGATACA
*
71497 CTGTATCGATACA
1 TTGTATCGATACA
71510 GGGTGATTAT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 25 1.00
ACGTcount: A:0.31, C:0.18, G:0.15, T:0.36
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:71675 original size:21 final size:20
Alignment explanation
Indices: 71631--71677 Score: 60
Period size: 21 Copynumber: 2.2 Consensus size: 20
71621 AAATCTTTTG
71631 CAAAATACTTGTTTTTCACTT
1 CAAAATACTTGTTTTTCAC-T
71652 CAAATATACTTCGTTTTTCA-T
1 CAAA-ATACTT-GTTTTTCACT
71673 CAAAA
1 CAAAA
71678 CCAGCATCAA
Statistics
Matches: 24, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
20 1 0.04
21 9 0.38
22 6 0.25
23 8 0.33
ACGTcount: A:0.34, C:0.19, G:0.04, T:0.43
Consensus pattern (20 bp):
CAAAATACTTGTTTTTCACT
Done.